Citrus Sinensis ID: 008214

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
Protein Sequence
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHEEEEEEcccHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccEEEEEEEEEcccccEEEEccccccccEEEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEccccccccccccHHHHHHHHHHHcccccccEEEccccccccccccccccEEEEEEEEEccccccccccccccccEEEEEccccccccccEEccccccccccEEEEEEEEEccccEEEEEEEEccccccccEEEEEEEEccccccccEEEEEEEcccccccccccEEEEEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccEEEEEEEEEEEEEcccccccccccccEEEEEEccEEEEEEEEEEccccccEEccEEEEEEEEccccEEEEEEEEccccccccEEEEEEEccHHcccccccEEEEccccccEEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHcccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEcEccEEEEEEEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEccccHHccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccEEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEccEcccccEEEEEEEEccccccccccEEEEEEHHHccccccccEEEEccccccccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccHccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEcccEEEEEcEEEEccccccccEEEEEEEccccccEEEEEEEEcccccccccEEEEEEHHHHHHcccccEEEEcccccccEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVedskkilpaefypswvvfSHRQKLTWLNHHLEKLWPYVNEAASELIKSsvepvleqyRPFILSslkfskftlgtvapqftgvsiiedggsgvtMELEMQWDANSSIILAIKTRLGValpvqvknigftGVFRLIfrplvdefpgfaaVSYSLREKKKLDFKLKVvggdistipglsdsIEATIHDAIedsitwpvrkivpilpgdyselelkpvgtLEVKLVQAkgltnkdligksdpyavlfvrplpektkksktinndlnpiwNEHFEFIVEDESTQHLVVRIyddegiqsseliGCAQVRlcelepgkvKDVWLKLVKDldvqrdtkyrgQVHLELLycpfgmenvftnpfapnfsmTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAenlpasdlmgkadpYVVLTMKksetrnktrvVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWdhdtfgkdymgrCILTLTRVILegeytdcfeldgtksgklklhlkwmpqpiyrdt
Flexible Loop (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGdistipglsdsIEATIHDAiedsitwpvRKIVPILPGDYSELELKPVGTLEVKLVQAKgltnkdligksdpyAVLFVrplpektkksktinndlnPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCElepgkvkdVWLKLVKDldvqrdtkyrGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKAlksgangteaielekdasqkRREVIIRGVLSVTVILAenlpasdlmgkaDPYVVLTMkksetrnktrvvndclnpIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEldgtksgklklhlkwmpqpiyrdt
Low Complexity Region (SEG)
MgfffglvvglvvglgiivgfvRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGkvkdvwlklvkdldvQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT
Disordered region (IsUnstruct)
**FFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP******KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKV*****************************EVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP*******
Disordered Region (DISOPRED)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT*****GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL*****TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGE*************************VIIRGVLSVTVILA*************PYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYR**
Disordered Region (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT
Disordered Region (DISPRO)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM***************************************************IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPI****
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	573	2.2.26 [Sep-21-2011]
Q8L706	560	Synaptotagmin-5 OS=Arabid	yes	no	0.977	1.0	0.748	0.0
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.987	0.994	0.700	0.0
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	no	no	0.895	0.948	0.310	9e-63
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.897	0.957	0.291	2e-59
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.898	0.953	0.274	6e-58
Q5DTI8	891	Extended synaptotagmin-3	yes	no	0.837	0.538	0.264	8e-32
Q5RAG2	1104	Extended synaptotagmin-1	yes	no	0.881	0.457	0.254	2e-31
Q7ZWU7	876	Extended synaptotagmin-2-	N/A	no	0.816	0.534	0.256	2e-31
Q9Z1X1	1088	Extended synaptotagmin-1	no	no	0.883	0.465	0.246	3e-31
Q5FWL4	872	Extended synaptotagmin-2-	N/A	no	0.780	0.512	0.255	6e-31

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/573 (74%), Positives = 500/573 (87%), Gaps = 13/573 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF  G+V+GL+VG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVS+I+   +G+T+EL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL++QRDTK RG+VHLELLY P+G  N   NPF  + SMTSLE+VL N    
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTS-SMTSLERVLKN---- 415

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
                   +  + E  +S+KR++VI+RGVLSVTVI AE +P  DLMGKADPYVVL+MKKS
Sbjct: 416 --------DTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKS 467

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
             ++KTRVVND LNP+WNQTFDFVVEDGLHDML+ EVWDHDTFGKDY+GRCILTLTRVI+
Sbjct: 468 GAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIM 527

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           E EY D + LD +K+GKL+LHLKWM Q IYRD+
Sbjct: 528 EEEYKDWYPLDESKTGKLQLHLKWMAQSIYRDS 560

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/575 (70%), Positives = 483/575 (84%), Gaps = 9/575 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FGL +G+ V  G++V F R  + RS  R++LA TIAAFARMTV+DS+K+LP +FYP
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN  LEK+WPYVNEAASELIKSSVEPVLEQY P +L+SLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178
           TVAPQFTGVSI+E   G +G+TMELEMQWD N  I+L +KT LGV+LP++VKNIGFTGVF
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query: 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 238
           RLIF+PLVDEFP F A+SYSLREKK LDF LKV+GG++++IPG+SD+IE TI DAIEDSI
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query: 239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 298
           TWPVRKI+PILPGDYS+LELKPVG L+VK+VQAK L NKD+IGKSDPYA++F+RPLP++T
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300

Query: 299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358
           KK+KTI+N LNPIWNEHFEFIVED STQHL VR++DDEG+ SS+LIG AQV L EL PGK
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGK 360

Query: 359 VKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGE 418
           VKD+WLKLVKDL++QRDTK RGQV LELLYCP G E    NPF P++S+T LEKV     
Sbjct: 361 VKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKV----- 415

Query: 419 KALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMK 478
             LK  +  ++A +++K  + K+++VI+RGVLSVTV+ AE+LPA D MGKAD +VV+T+K
Sbjct: 416 --LKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLK 473

Query: 479 KSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 538
           KSET++KTRVV D LNP+WNQTFDFVVED LHD+L  EVWDHD FGKD +GR I+TLTRV
Sbjct: 474 KSETKSKTRVVPDSLNPVWNQTFDFVVEDALHDLLTLEVWDHDKFGKDKIGRVIMTLTRV 533

Query: 539 ILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           +LEGE+ + FELDG KSGKL +HLKW P+   RD 
Sbjct: 534 MLEGEFQEWFELDGAKSGKLCVHLKWTPRLKLRDA 568

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  241 bits (616), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 179/576 (31%), Positives = 285/576 (49%), Gaps = 63/576 (10%)

Query: 2   GFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPS 61
           GF  G+ +GLV+G  + V  + ++    ++RS       A  RM  E           P 
Sbjct: 12  GFGVGISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPE----------IPL 61

Query: 62  WVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRP-FILSSLKFSKFTLG 120
           WV      ++ W+N  LE +WPY+++A  +  K+  +P++E+  P + + S++F   TLG
Sbjct: 62  WVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTLG 121

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           ++ P F G+ +       + ME  ++W AN +I++AIK   G+   VQV ++      R+
Sbjct: 122 SLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKA-FGLKATVQVVDLQVFAQPRI 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
             +PLV  FP FA +  SL EK  +DF LK+ G D+ +IPGL   ++  I D + +   W
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           P   +VPIL  D ++   +PVG + VK+V+A GL  KDL+G +DP+  + +      +KK
Sbjct: 241 PKTLVVPIL--DPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKK 298

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +   + +LNP WNE F+F V D  TQ L   +YD E + + E +G   + L E+ P + K
Sbjct: 299 TTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHK 358

Query: 361 DVWLKLVKDLDVQRD----TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTN 416
              L+L K LD   D     KYRG++ +ELLY PF  E +        F  T        
Sbjct: 359 AFTLELRKTLDGGEDGQPPDKYRGKLEVELLYKPFTEEEM-----PKGFEET-------- 405

Query: 417 GEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGK--ADPYVV 474
             +A++    GT A                 G+L V V  AE     D+ GK   +PYV 
Sbjct: 406 --QAVQKAPEGTPAA---------------GGMLVVIVHSAE-----DVEGKHHTNPYVR 443

Query: 475 LTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDT-----FGKDYM 528
           +  K  E   KT+ V    +P WN+ F F++E+  + + L  EV    +       K+ +
Sbjct: 444 IYFKGEE--RKTKHVKKNRDPRWNEEFTFMLEEPPVREKLHVEVLSTSSRIGLLHPKETL 501

Query: 529 GRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 564
           G   + +  V+        F L  +K+GK+++ L+W
Sbjct: 502 GYVDIPVVDVVNNKRMNQKFHLIDSKNGKIQIELEW 537

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.

Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 167/573 (29%), Positives = 282/573 (49%), Gaps = 59/573 (10%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           +GF FG  +G+V+G  + + F  ++    +++  +       A M  E           P
Sbjct: 11  IGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPE----------IP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFTL 119
            WV      ++ WLN  +  +WPY+++A  ++ KS  +P++ EQ   + + S++F   TL
Sbjct: 61  MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120

Query: 120 GTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           G++ P F G+ +       + MEL ++W  N +II+  K   G+   VQV ++      R
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATPR 179

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           +  +PLV  FP FA +  SL +K ++DF LK++G D+  IPGL   ++  I D + +   
Sbjct: 180 ITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYL 239

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WP    V I+  D S+   KPVG L VK+++A  L  KDL+G SDPY  L +       K
Sbjct: 240 WPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGK 297

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
           K+   +++LNP WNE F+ +V++  +Q L + +YD E +   + IG   ++L +L P + 
Sbjct: 298 KTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEP 357

Query: 360 KDVWLKLVKDLDVQR--DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNG 417
           K + L+L+K ++ +     K RGQ+ +E+ Y PF  +++  N   PN             
Sbjct: 358 KLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPN------------- 404

Query: 418 EKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGK--ADPYVVL 475
             A++    GT +                 G+L V V  AE     DL GK   +P V L
Sbjct: 405 --AVEKAPEGTPS---------------TGGLLVVIVHEAE-----DLEGKYHTNPSVRL 442

Query: 476 TMKKSETRNKTRVVNDCLNPIWNQTFDFVV-EDGLHDMLIAEVWDHDT---FGKDYMGRC 531
             +  E   KT+ V     P W++ F F + E  ++D L  EV    +     K+ +G  
Sbjct: 443 LFRGEE--RKTKRVKKNREPRWDEDFQFPLDEPPINDKLHVEVISSSSRLIHPKETLGYV 500

Query: 532 ILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 564
           ++ L  V+      D + L  +K+G++++ L+W
Sbjct: 501 VINLGDVVSNRRINDKYHLIDSKNGRIQIELQW 533

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  225 bits (574), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 158/576 (27%), Positives = 278/576 (48%), Gaps = 61/576 (10%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           +GF  G+ +GL++G  +++    S       R  + T+I+    +  +            
Sbjct: 11  IGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP---------- 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTL 119
            W+     +++ W N  +  +WPY+++A   +I+SSV+P+   Y   F + S++F   +L
Sbjct: 61  LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120

Query: 120 GTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           GT+ P   GV   E     +  E  ++W  N +I+L +K  L + + VQ+ ++ F  + R
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV-LSLRIRVQLVDLQFFAIVR 179

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           +  +PL+  FP F  V  SL EK  +DF LKV+GGD+ +IPGL   ++ TI   +     
Sbjct: 180 VALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYH 239

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WP    +PIL    + ++ KPVG L V +++A+ L  KDL+G SDPY  L +       K
Sbjct: 240 WPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAK 298

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
           K+     +LNP WNEHF+ IV+D ++Q L + ++D + +   + +G   + L ++ PG+ 
Sbjct: 299 KTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGER 358

Query: 360 KDVWLKLVKDLDVQRDT---KYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTN 416
           K+  L L+K+ +V  D+   K RG++ ++L Y PF                         
Sbjct: 359 KEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPF------------------------- 393

Query: 417 GEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGK---ADPYV 473
            E+++K      E    E D    +      G+LSV V       A D+ GK   ++PY 
Sbjct: 394 REESIKRRKESREEKSSEDDDFLSQ-----AGLLSVAV-----QSAKDVEGKKKHSNPYA 443

Query: 474 VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDT----FGKDYM 528
           V+  +  + + K        +P WN+ F F +E+  + + +  EV    T      K+ +
Sbjct: 444 VVLFRGEKKKTKMLKKTR--DPRWNEEFQFTLEEPPVKESIRVEVMSKGTGFHFRSKEEL 501

Query: 529 GRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 564
           G   + L  V+  G     + L  +++G + + ++W
Sbjct: 502 GHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRW 537

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score =  139 bits (349), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 142/537 (26%), Positives = 237/537 (44%), Gaps = 57/537 (10%)

Query: 28  RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYV 85
           R   R +L    AAF  +  E     + L  +  P+W+ F   +++ W N  + ++WPY+
Sbjct: 77  RRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPYL 136

Query: 86  NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMEL 143
           +      I+  +EP + + +   L +  F+K   G   P+  GV +  D      VT++L
Sbjct: 137 SMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDL 195

Query: 144 EMQWDANSSIILAI-KTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
           ++ +  +  I + + K R GV+       +   G  R+I  PL+ + P   AV+    +K
Sbjct: 196 QICYIGDCEISVELQKIRGGVS------GVQLQGTLRVILEPLLVDKPFIGAVTVFFLQK 249

Query: 203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELELK-P 260
             L      +  ++  +PG+++  ++ + D I   +  P R  VP+  G D + L +  P
Sbjct: 250 PHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPLP 308

Query: 261 VGTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
            G + V L++AK L  KD    L GKSDPYA + +     +  +S+TI  +LNP WNE F
Sbjct: 309 CGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIG---LQHCRSRTIYKNLNPTWNEVF 365

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
           EF+V +   Q L V +Y DE     + +G  Q+ L ++   +V D W  L        DT
Sbjct: 366 EFMVYEVPGQDLEVDLY-DEDTDKDDFLGSLQICLGDVMKNRVVDEWFAL-------NDT 417

Query: 377 KYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKD 436
              G++HL L +     +         N S  S   ++   E A     N  + +  E  
Sbjct: 418 T-SGRLHLRLEWLSLLTDQ---EALTENDSGLSTAILVVFLENACNLPRNPFDYLNGEYR 473

Query: 437 ASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPI 496
           A +  R V  +         A   P+S        YV LT+ K    +KT       +P+
Sbjct: 474 AKKLSRFVKNK---------ASRDPSS--------YVKLTVGKKTFTSKT--CPHSKDPV 514

Query: 497 WNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT--DCFELD 551
           W+Q F F V     + L  +V D +   +  +G     L R++   + T   CF+LD
Sbjct: 515 WSQVFSFFVHSVAAEQLCLKVLDDEL--ECALGVLEFPLCRILPCADLTLEQCFQLD 569

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 150/589 (25%), Positives = 256/589 (43%), Gaps = 84/589 (14%)

Query: 6   GLVVGLVV-GLGIIVGF--VRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFY--- 59
           GL VG V+ GL + +G+  VR E  RS LR+         AR  ++D +++     Y   
Sbjct: 75  GLSVGFVLFGLALYLGWRRVRDEKERS-LRA---------ARQLLDDEEQLTAKTLYMSH 124

Query: 60  ---PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSK 116
              P+WV F   +K  WLN  + ++WP++ +   +L+  +V P +    P  L +  F++
Sbjct: 125 RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTR 183

Query: 117 FTLGTVAPQFTGVSIIE-DGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFT 175
             LG    +  GV +        + ++L + +  +  I + +K     A    VK +   
Sbjct: 184 VELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKA---GVKGMQLH 240

Query: 176 GVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIE 235
           GV R+I  PL+ + P   AVS     +  LD     +  ++  IPGLS   +  I D+I 
Sbjct: 241 GVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIA 299

Query: 236 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 286
             +  P R +VP++P      +L+   P G + + L+ A+GLT+KD      + GKSDPY
Sbjct: 300 AFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKSDPY 359

Query: 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 346
           A   VR L  +T  S+ I+ +LNP W E +E +V +   Q + V ++D +  +   L G 
Sbjct: 360 A--LVR-LGTQTFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFL-GR 415

Query: 347 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 406
            ++ + ++    V D W  L            +GQVHL L +                  
Sbjct: 416 MKLDVGKVLQAGVLDDWFPL---------QGGQGQVHLRLEWL----------------- 449

Query: 407 MTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLM 466
                        +L S A   E +         R E     +L V +  A++LP     
Sbjct: 450 -------------SLLSDAEKLEQVLQWNQGVSSRPEPPSAAILVVYLDRAQDLPLKKGN 496

Query: 467 GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 526
            + +P V L+++     +K     +C  P+W + F F ++D     L  +V D       
Sbjct: 497 KEPNPMVQLSIQDVTQESKAVYSTNC--PVWEEAFRFFLQDPQSQELDVQVKDDSR--AL 552

Query: 527 YMGRCILTLTRVILEGEYT--DCFELDGTKSGKLKLHLKWMPQPIYRDT 573
            +G   L L R++   E      F+L  +     +L++K + + +Y D+
Sbjct: 553 TLGALTLPLARLLTAPELILDQWFQLSSSGPNS-RLYMKLVMRILYLDS 600

May play a role as calcium-regulated intrinsic membrane protein.

Pongo abelii (taxid: 9601)

>sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 239/527 (45%), Gaps = 59/527 (11%)

Query: 60  PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTL 119
           P+WV F   ++  WLN  ++ +WPY+ +   +L + ++EP +       LS+  F+K  +
Sbjct: 116 PAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAVRGANAH-LSTFSFTKIDM 174

Query: 120 GTVAPQFTGVSIIEDG--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGV 177
           G+   +  GV +  +      + ++L++ +   + I L +K     A    VK+I   G 
Sbjct: 175 GSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRA---GVKSIQLHGT 231

Query: 178 FRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG--DISTIPGLSDSIEATIHDAIE 235
            R+I  PL+ + P   A+S     K  L+     +    D+  + GLSD+I   I D I 
Sbjct: 232 MRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGLTNMLDMPGLNGLSDTI---ILDIIS 288

Query: 236 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 286
           + +  P R  VP++  D    +L+   P G L +  ++A+ L  KD      + GKSDPY
Sbjct: 289 NYLVLPNRITVPLV-SDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPY 347

Query: 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 346
            V  VR L  +  +SK I  +LNP WNE +E +V +   Q L + ++ DE     + +G 
Sbjct: 348 GV--VR-LGNQVFQSKVIKENLNPKWNEVYEALVHEHPGQELEIELF-DEDTDKDDFLGS 403

Query: 347 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 406
             + L E+E  +V D W  L        D    G++HL+L +              P  +
Sbjct: 404 LLIDLVEVEKERVVDEWFTL--------DEATSGKLHLKLEW------------LTPKST 443

Query: 407 MTSLEKVLTNGEKALKSGANGTEA----IELEKDASQKRREVIIRGVLSVTVILAENLPA 462
             +L++VL + +       +G  A    + L+   S     + I         + +   A
Sbjct: 444 TENLDQVLKSIKADKDQANDGLSAALLILYLDSARSLPNNPLEINHDGMKKAAVEKAKKA 503

Query: 463 SDLMGKA-DPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 521
              +G + +PYV+ ++    T  +++V      P+W QTF F V +     L  EV D +
Sbjct: 504 GKKIGSSPNPYVLFSV--GHTVQESKVKYKTAEPVWEQTFTFFVHNPKRQDLEVEVKDEN 561

Query: 522 TFGKDYMGRCILTLTRVILEGEYT--DCFELDGT---KSGKLKLHLK 563
              ++ MG   + L++++   + T    F L+ +    S K+K+ L+
Sbjct: 562 --HQNSMGNIKIPLSQILASEDLTLNQRFHLNNSGPNSSLKMKIALR 606

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

>sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 145/588 (24%), Positives = 261/588 (44%), Gaps = 82/588 (13%)

Query: 6   GLVVGLVV-GLGIIVGFVRSENARSK-LRSELATTIAAFARMTVEDSKKILPAEFY---- 59
           GL VG V+ GL + +G+ R  + + + LR+         AR  ++D ++I     Y    
Sbjct: 67  GLSVGFVLFGLALYLGWRRVRDGKERSLRA---------ARQLLDDEERITAETLYMSHR 117

Query: 60  --PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKF 117
             P+WV F   +K  WLN  + ++WP++ +   +L+  +V P +    P  L +  F++ 
Sbjct: 118 ELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRV 176

Query: 118 TLGTVAPQFTGVSI-IEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTG 176
            LG    +  GV +        + ++L + +  +  I + +K     A    VK +   G
Sbjct: 177 ELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKA---GVKGMQLHG 233

Query: 177 VFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIED 236
           V R+I  PL+ + P   AVS    ++  LD     +  ++  IPGLS   +  I D+I  
Sbjct: 234 VLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAA 292

Query: 237 SITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPYA 287
            +  P R +VP++P      +L+   P G + + L+ A+GL++KD      + GKSDPYA
Sbjct: 293 FLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYA 352

Query: 288 VLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCA 347
           ++ V     +T  S+ I+ +LNP W E +E IV +   Q + V ++D +  +   L G  
Sbjct: 353 LVRVG---TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFL-GRM 408

Query: 348 QVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSM 407
           ++ + ++    V D W  L            +GQVHL L +                   
Sbjct: 409 KLDVGKVLQAGVLDNWYPL---------QGGQGQVHLRLEWL------------------ 441

Query: 408 TSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMG 467
                +L + EK         + ++  +  +  R E     +L V +  A++LP      
Sbjct: 442 ----SLLPDAEKL-------DQVLQWNRGIT-SRPEPPSAAILVVYLDRAQDLPLKKGNK 489

Query: 468 KADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY 527
           + +P V L+++     +K     +C  P+W + F F ++D     L  +V D        
Sbjct: 490 EPNPMVQLSVQDVTQESKATYSTNC--PVWEEAFRFFLQDPRSQELDVQVKDDSR--ALT 545

Query: 528 MGRCILTLTRVILEGEYT--DCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           +G   L L R++   E T    F+L  +     +L++K + + +Y D+
Sbjct: 546 LGALTLPLARLLTASELTLDQWFQLSSSGPNS-RLYMKLVMRILYLDS 592

May play a role as calcium-regulated intrinsic membrane protein.

Rattus norvegicus (taxid: 10116)

>sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1

 Score =  135 bits (341), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 140/548 (25%), Positives = 244/548 (44%), Gaps = 101/548 (18%)

Query: 60  PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTL 119
           P+WV F   ++  WLN  ++ +WPY+ +   +L + ++EP +       LS+  F+K  +
Sbjct: 112 PAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAVRGANAH-LSTFNFTKIDM 170

Query: 120 GTVAPQFTGVSIIEDG--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGV 177
           G+   +  GV +  +      + ++L++ +   + I L +K     A    VK+I   G 
Sbjct: 171 GSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRA---GVKSIQLHGT 227

Query: 178 FRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG--DISTIPGLSDSIEATIHDAIE 235
            R+I  PL+ + P   A+S     K  L+     +    D+  + GLSD+I   I D I 
Sbjct: 228 MRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGLTNMLDMPGLNGLSDTI---ILDIIS 284

Query: 236 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 286
           + +  P R  VP++  D    +L+   P G L +  ++A+ L  KD      + GKSDPY
Sbjct: 285 NYLVLPNRITVPLV-SDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPY 343

Query: 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 346
            V  VR L  +  +SK I  +LNP WNE +E +V +   Q L + ++ DE     + +G 
Sbjct: 344 GV--VR-LGNQVFQSKVIKENLNPKWNEVYEALVHEHPGQELEIELF-DEDTDKDDFLGS 399

Query: 347 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 406
             + L E+E  +V D W  L        D    G++HL+L +              PN +
Sbjct: 400 LLIDLVEVEKERVVDEWFSL--------DEATSGKLHLKLEW------------LTPNST 439

Query: 407 MTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVIL----AENLPA 462
             +L++VL              ++I+ +KD +         G+ S  +IL    A +LP 
Sbjct: 440 TDNLDQVL--------------KSIKADKDQAND-------GLSSALLILYLDSARSLPN 478

Query: 463 SDL---------------------MGKA-DPYVVLTMKKSETRNKTRVVNDCLNPIWNQT 500
           + L                     +G + +PYV+ ++  +   +K +       P+W QT
Sbjct: 479 NPLEINHDGMKKAAVEKAKKAGKKIGSSPNPYVLFSVGHAVQESKVKY--KTAEPLWEQT 536

Query: 501 FDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT--DCFELDGT---KS 555
           F F V +     L  EV D +   +  MG   + L++++   + T    F L+ +    S
Sbjct: 537 FTFFVHNPKRQDLEVEVKDEN--HQSSMGNLKIPLSQILASEDLTMNQRFHLNNSGPNTS 594

Query: 556 GKLKLHLK 563
            K+K+ L+
Sbjct: 595 LKMKIALR 602

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	573
356562953	565	PREDICTED: extended synaptotagmin-1-like	0.986	1.0	0.799	0.0
118484311	566	unknown [Populus trichocarpa]	0.987	1.0	0.799	0.0
224144112	566	plant synaptotagmin [Populus trichocarpa	0.987	1.0	0.797	0.0
449443041	567	PREDICTED: synaptotagmin-5-like [Cucumis	0.987	0.998	0.792	0.0
255579863	558	calcium lipid binding protein, putative	0.973	1.0	0.801	0.0
356562955	557	PREDICTED: extended synaptotagmin-1-like	0.972	1.0	0.790	0.0
224120508	566	plant synaptotagmin [Populus trichocarpa	0.987	1.0	0.790	0.0
225446229	567	PREDICTED: extended synaptotagmin-1 [Vit	0.986	0.996	0.793	0.0
357478297	566	Synaptotagmin-1 [Medicago truncatula] gi	0.963	0.975	0.787	0.0
186478159	560	calcium-dependent lipid-binding domain-c	0.977	1.0	0.748	0.0

>gi|356562953|ref|XP_003549732.1| PREDICTED: extended synaptotagmin-1-like isoform 1 [Glycine max]

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/573 (79%), Positives = 513/573 (89%), Gaps = 8/573 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FG+VVG++VGL IIVGFVR EN+R+  RS+LATT+AAFARMTVEDS+KILP +FYP
Sbjct: 1   MGFIFGVVVGIIVGLAIIVGFVRGENSRAAQRSQLATTVAAFARMTVEDSRKILPPQFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS  QKL+WLN HL K+WPYVNEAASELIK+SVEP+LE+YRP +L++LKFSKFTLG
Sbjct: 61  SWVVFSSSQKLSWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL IKT LGVALPVQVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGDIS IPGL D+IE  I DA+EDSITW
Sbjct: 181 IFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKP G LEVKLVQAK LTNKD+IGKSDPYAV+++RPL E+ KK
Sbjct: 241 PVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKK 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQH+ V++YD EG+QSSELIGCAQ++L EL+PGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL++QRDTK RGQVHLELLYCPFGMEN FTNPFAPN+SMTSLEKVL N    
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMENSFTNPFAPNYSMTSLEKVLKN---- 416

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
               ANG E+   E   +QK++EVIIRGVLSVTVI AE+LPA+D MGK+DP+VVLT+KK+
Sbjct: 417 ----ANGVESNGNENAVTQKKKEVIIRGVLSVTVISAEDLPATDFMGKSDPFVVLTLKKA 472

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
           ET+NKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 473 ETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVIL 532

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           EGEY + F LDG KSG L LHLKWMPQPI+RD+
Sbjct: 533 EGEYKERFVLDGAKSGFLNLHLKWMPQPIFRDS 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484311|gb|ABK94033.1| unknown [Populus trichocarpa]

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/573 (79%), Positives = 508/573 (88%), Gaps = 7/573 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL+ GL VGL +IVGFV+SENARSKLRSELATTIAAFARMTV+DS+KILPAEFYP
Sbjct: 1   MSFFVGLIFGLAVGLALIVGFVKSENARSKLRSELATTIAAFARMTVDDSRKILPAEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK+S+EPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKTSLEPVLEQYRPVILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTR GV+LPVQVK+IGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILGIKTRFGVSLPVQVKDIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F A+ YSLR+KKK+DF LKV+GGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGDISAIPGLDDAIQETIRNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKNLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SK INNDLNPIWNEHFEF+VED STQHLVV++YDDEG+Q+SEL+GCAQV+L ELEPGKVK
Sbjct: 301 SKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDDEGLQASELLGCAQVKLSELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL+VQRD K RGQVHLELLYCPFG+EN   NPF+ +FSMTSLEKV       
Sbjct: 361 DVWLKLVKDLEVQRDNKNRGQVHLELLYCPFGVENGLVNPFSSDFSMTSLEKV------- 413

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           LKSG NGT  I    + +QKRREVIIRGVL+VTVI AE+LP  DLMGKADP+V LTMKKS
Sbjct: 414 LKSGENGTGVIGNGNEVTQKRREVIIRGVLAVTVISAEDLPMVDLMGKADPFVTLTMKKS 473

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
           E RNKTRVVN+CLNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 474 EMRNKTRVVNNCLNPVWNQTFDFVVEDGLHDMLIIEVWDHDTFGKDYMGRCILTLTRVIL 533

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           EGEY +CF+LD  KSG+L LHLKW PQ IYRD+
Sbjct: 534 EGEYKECFQLDEAKSGRLNLHLKWTPQHIYRDS 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144112|ref|XP_002325190.1| plant synaptotagmin [Populus trichocarpa] gi|222866624|gb|EEF03755.1| plant synaptotagmin [Populus trichocarpa]

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/573 (79%), Positives = 508/573 (88%), Gaps = 7/573 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL+ GL VGL +IVGFV+SENARSKLRSELATTIAAFARMTV+DS+KILPAEFYP
Sbjct: 1   MSFFVGLIFGLAVGLALIVGFVKSENARSKLRSELATTIAAFARMTVDDSRKILPAEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK+S+EPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKASLEPVLEQYRPVILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTR GV+LPVQVK+IGFTGVF+L
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILGIKTRFGVSLPVQVKDIGFTGVFKL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F A+ YSLR+KKK+DF LKV+GGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGDISAIPGLDDAIQETIRNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SK INNDLNPIWNEHFEF+VED STQHLVV++YDDEG+Q+SEL+GCAQV+L ELEPGKVK
Sbjct: 301 SKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDDEGLQASELLGCAQVKLSELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL+VQRD K RGQVHLELLYCPFG+EN   NPF+ +FSMTSLEKV       
Sbjct: 361 DVWLKLVKDLEVQRDNKNRGQVHLELLYCPFGVENGLVNPFSSDFSMTSLEKV------- 413

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           LKSG NGT  I    + +QKRREVIIRGVL+VTVI AE+LP  DLMGKADP+V LTMKKS
Sbjct: 414 LKSGENGTGVIGNGNEVAQKRREVIIRGVLAVTVISAEDLPMVDLMGKADPFVTLTMKKS 473

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
           E RNKTRVVN+CLNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 474 EMRNKTRVVNNCLNPVWNQTFDFVVEDGLHDMLIIEVWDHDTFGKDYMGRCILTLTRVIL 533

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           EGEY +CF+LD  KSG+L LHLKW PQ IYRD+
Sbjct: 534 EGEYKECFQLDEAKSGRLNLHLKWTPQHIYRDS 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443041|ref|XP_004139289.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus] gi|449517890|ref|XP_004165977.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus]

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/574 (79%), Positives = 511/574 (89%), Gaps = 8/574 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M F  GLV+GL VGLG++VGFV+SENARSK R++LA TIAAFARMTVEDS+K+LP ++YP
Sbjct: 1   MAFVLGLVLGLFVGLGLVVGFVKSENARSKRRADLAATIAAFARMTVEDSRKLLPPQYYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLN HL K+WPYVNEAAS+LIK+SVEPVLEQYRP ILSSLKFS+FTLG
Sbjct: 61  SWVVFSQRQKLTWLNQHLTKIWPYVNEAASDLIKASVEPVLEQYRPIILSSLKFSRFTLG 120

Query: 121 TVAPQFTGVSIIEDGGS-GVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           TVAPQ TG+SIIEDGG+ G+TME EMQWD N SIIL IKTRLGVALPVQVKN+GFTGVFR
Sbjct: 121 TVAPQLTGISIIEDGGTDGITMEFEMQWDGNQSIILDIKTRLGVALPVQVKNLGFTGVFR 180

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           LIF+PLVDEFP F AV +SLR+KKKLDF LKV+GGDIS IPGL  ++E TI DA+EDSIT
Sbjct: 181 LIFKPLVDEFPCFGAVCFSLRQKKKLDFTLKVIGGDISAIPGLYSALEGTIRDAVEDSIT 240

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WPVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKD+IGKSDPYA L++RPL ++ K
Sbjct: 241 WPVRKVIPIIPGDYSDLELKPVGILEVKLVQAKELTNKDVIGKSDPYAELYIRPLRDRMK 300

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
            SK INNDLNP+WNEHFEF+VEDESTQHLVV++YDDEG+Q+SELIGCAQ++L EL+PGKV
Sbjct: 301 TSKIINNDLNPVWNEHFEFVVEDESTQHLVVKVYDDEGLQASELIGCAQIQLSELQPGKV 360

Query: 360 KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEK 419
           KDVWLKLVKDL+V RD K RGQVHLELLYCPFGMEN FTNPFA +F MTSLE VL N   
Sbjct: 361 KDVWLKLVKDLEVIRDNKNRGQVHLELLYCPFGMENGFTNPFASDFRMTSLESVLKN--- 417

Query: 420 ALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK 479
                ANGTEA E E+  +QKR+EVIIRGVLSVTVI AE+LPA+DL+GK+DPYVVLTMKK
Sbjct: 418 ----RANGTEATESEQAVTQKRKEVIIRGVLSVTVISAEDLPATDLVGKSDPYVVLTMKK 473

Query: 480 SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVI 539
           S  +NKTRVVN+ LNPIWNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVI
Sbjct: 474 SGMKNKTRVVNESLNPIWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVI 533

Query: 540 LEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           LEGEY + FELDG KSG+L LHLKWMPQPIYRDT
Sbjct: 534 LEGEYKESFELDGAKSGRLNLHLKWMPQPIYRDT 567

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579863|ref|XP_002530768.1| calcium lipid binding protein, putative [Ricinus communis] gi|223529684|gb|EEF31628.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/573 (80%), Positives = 506/573 (88%), Gaps = 15/573 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FFFGLV+GL VGL I+VGFV+SENARSK RSELA T+AAFARMTVEDS+KILP+EFYP
Sbjct: 1   MSFFFGLVIGLAVGLAIVVGFVKSENARSKRRSELARTVAAFARMTVEDSRKILPSEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SW        LTWLN HL K+WPYVNEAASELIK+SVEPVLEQYRP ILSSLKFSK TLG
Sbjct: 61  SW--------LTWLNLHLTKIWPYVNEAASELIKASVEPVLEQYRPIILSSLKFSKLTLG 112

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SI+L IKTRLGV+LPVQVKNIGFTGVFRL
Sbjct: 113 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIVLDIKTRLGVSLPVQVKNIGFTGVFRL 172

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV+EFP F AV +SLR+KKKLDF LKV+GGDISTIPG+ D+IE TI DAIEDSITW
Sbjct: 173 IFKPLVNEFPCFGAVCFSLRQKKKLDFTLKVIGGDISTIPGIYDAIEGTIRDAIEDSITW 232

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PILPGDYS+LELKPVG LEVKLVQAK LTNKD+IGKSDPYA L++RP+ ++ K 
Sbjct: 233 PVRKVIPILPGDYSDLELKPVGMLEVKLVQAKELTNKDIIGKSDPYAELYIRPIRDRIKT 292

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEFIVED STQHLVV+I+DDEG+QSSELIGCAQV+LCEL+PGKVK
Sbjct: 293 SKTINNDLNPIWNEHFEFIVEDASTQHLVVKIFDDEGLQSSELIGCAQVQLCELQPGKVK 352

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL+VQRD + RGQVHLELLYCPFGMEN F NPFAP FSMTSLEKV       
Sbjct: 353 DVWLKLVKDLEVQRDNRNRGQVHLELLYCPFGMENGFKNPFAPTFSMTSLEKV------- 405

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           LK G +G E  E  +  +Q+RR+VI+RGVLSVTVI AE+LP  DLMGKADPYVVLTMKKS
Sbjct: 406 LKGGVDGMEITENGQAGTQRRRDVIVRGVLSVTVISAEDLPVVDLMGKADPYVVLTMKKS 465

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
           ETRNKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCI+TLTRVIL
Sbjct: 466 ETRNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLILEVWDHDTFGKDYMGRCIMTLTRVIL 525

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           EGEY D F +DG KSG L ++LKWMPQPIYRD+
Sbjct: 526 EGEYKDKFPIDGAKSGTLYVNLKWMPQPIYRDS 558

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562955|ref|XP_003549733.1| PREDICTED: extended synaptotagmin-1-like isoform 2 [Glycine max]

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/573 (79%), Positives = 507/573 (88%), Gaps = 16/573 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FG+VVG++VGL IIVGFVR EN+R+  RS+LATT+AAFARMTVEDS+KILP +FYP
Sbjct: 1   MGFIFGVVVGIIVGLAIIVGFVRGENSRAAQRSQLATTVAAFARMTVEDSRKILPPQFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SW        LTWLN HL K+WPYVNEAASELIK+SVEP+LE+YRP +L++LKFSKFTLG
Sbjct: 61  SW--------LTWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLG 112

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL IKT LGVALPVQVKNIGFTGVFRL
Sbjct: 113 TVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRL 172

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGDIS IPGL D+IE  I DA+EDSITW
Sbjct: 173 IFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITW 232

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKP G LEVKLVQAK LTNKD+IGKSDPYAV+++RPL E+ KK
Sbjct: 233 PVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKK 292

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQH+ V++YD EG+QSSELIGCAQ++L EL+PGKVK
Sbjct: 293 SKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVK 352

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL++QRDTK RGQVHLELLYCPFGMEN FTNPFAPN+SMTSLEKVL N    
Sbjct: 353 DVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMENSFTNPFAPNYSMTSLEKVLKN---- 408

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
               ANG E+   E   +QK++EVIIRGVLSVTVI AE+LPA+D MGK+DP+VVLT+KK+
Sbjct: 409 ----ANGVESNGNENAVTQKKKEVIIRGVLSVTVISAEDLPATDFMGKSDPFVVLTLKKA 464

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
           ET+NKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 465 ETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVIL 524

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           EGEY + F LDG KSG L LHLKWMPQPI+RD+
Sbjct: 525 EGEYKERFVLDGAKSGFLNLHLKWMPQPIFRDS 557

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120508|ref|XP_002331065.1| plant synaptotagmin [Populus trichocarpa] gi|222872995|gb|EEF10126.1| plant synaptotagmin [Populus trichocarpa]

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/573 (79%), Positives = 503/573 (87%), Gaps = 7/573 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL++GL VGL +IVGFV+SENARSKLRSELA  IAAFARMTVEDS+KILPAE+YP
Sbjct: 1   MSFFVGLIIGLAVGLALIVGFVKSENARSKLRSELAIAIAAFARMTVEDSRKILPAEYYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK SVEPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKDSVEPVLEQYRPIILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTRLGV+LPVQVK+IGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILDIKTRLGVSLPVQVKDIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F AV  SLR+KKK+DFKLKVVGGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVAEFPCFGAVCCSLRQKKKMDFKLKVVGGDISAIPGLDDAIQETIQNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +K INNDLNPIWNEHFEF+VED +TQHLVV+IYDDEGIQ++EL+GCAQV+L ELEPGKVK
Sbjct: 301 TKIINNDLNPIWNEHFEFVVEDATTQHLVVKIYDDEGIQAAELLGCAQVKLNELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           D+WLKLVKDL+VQRD K RGQVHLELLY PFGMEN   N FA +FSMTSLEKVL NG  +
Sbjct: 361 DLWLKLVKDLEVQRDNKNRGQVHLELLYRPFGMENGLGNSFASSFSMTSLEKVLKNGANS 420

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           ++   N  E        ++KRREVI+RGVLS+TVI AE+LP  DLMGKADP+V LTMKKS
Sbjct: 421 MEITGNVNE-------VTKKRREVIVRGVLSITVISAEDLPVVDLMGKADPFVTLTMKKS 473

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
           E RNKTRVVN+ LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 474 EMRNKTRVVNNNLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVIL 533

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           EGEY DCF+LD  KSG+L LHLKW PQ IYRD+
Sbjct: 534 EGEYKDCFQLDEAKSGRLNLHLKWSPQHIYRDS 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446229|ref|XP_002265034.1| PREDICTED: extended synaptotagmin-1 [Vitis vinifera] gi|296084522|emb|CBI25543.3| unnamed protein product [Vitis vinifera]

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/572 (79%), Positives = 504/572 (88%), Gaps = 7/572 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GLV+G+ VG+G+IV FVRSEN RSK RS LATT+AA ARMTVEDS+KILP++FYP
Sbjct: 1   MSFFLGLVIGITVGIGLIVLFVRSENIRSKQRSALATTVAALARMTVEDSRKILPSKFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYVNEAASELI+++VEP+LEQYRP ILSSLKFS+FTLG
Sbjct: 61  SWVVFSQRQKLTWLNHHLTKIWPYVNEAASELIRTNVEPILEQYRPMILSSLKFSRFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TV+PQFTGVSIIEDG   +T+ELE+QWD N SIIL I TRLGVALPVQVKNIGFTGVFRL
Sbjct: 121 TVSPQFTGVSIIEDGADCITLELELQWDGNPSIILDINTRLGVALPVQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           +F+PLVDEFP F AV +SLR+KKKLD  LKVVGGDIS IPG+SD+I+ TI +AIEDSI W
Sbjct: 181 MFKPLVDEFPCFGAVCFSLRQKKKLDLTLKVVGGDISAIPGISDAIKDTIDNAIEDSIMW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVGTLEVKLVQAK LTNKD+IGKSDP+AVL+VRPLP + K 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGTLEVKLVQAKELTNKDIIGKSDPFAVLYVRPLPNRMKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINN LNP+WNEHFEFIVED STQHLVV+IYD+EG+Q+SELIGCAQV+L ELEPGKVK
Sbjct: 301 SKTINNQLNPVWNEHFEFIVEDASTQHLVVKIYDNEGLQASELIGCAQVQLRELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           D W KLVKDL+VQRDTK RGQVHLELLY PFGMEN FTNPFAP FSMTSLEKV       
Sbjct: 361 DAWWKLVKDLEVQRDTKNRGQVHLELLYVPFGMENGFTNPFAPKFSMTSLEKV------- 413

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           LK+G +GTE  E      QK+REVI+RGVLS+TVI AE+LP  DLMGKADPYVVL +KKS
Sbjct: 414 LKNGVDGTEVAENGNAVMQKKREVIVRGVLSITVISAEDLPVVDLMGKADPYVVLILKKS 473

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
           E RNKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 474 EIRNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLILEVWDHDTFGKDYMGRCILTLTRVIL 533

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRD 572
           EGEY + F+LD  KSG+L LHLKWMPQPIYRD
Sbjct: 534 EGEYKETFQLDEAKSGRLNLHLKWMPQPIYRD 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478297|ref|XP_003609434.1| Synaptotagmin-1 [Medicago truncatula] gi|355510489|gb|AES91631.1| Synaptotagmin-1 [Medicago truncatula]

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/559 (78%), Positives = 498/559 (89%), Gaps = 7/559 (1%)

Query: 15  LGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWL 74
           L II+ FVRSEN+RS  RS+LATTIAAFARMTVEDS+K+LP++FYPSWVVFS+RQKLTWL
Sbjct: 15  LAIIIAFVRSENSRSARRSQLATTIAAFARMTVEDSRKLLPSQFYPSWVVFSNRQKLTWL 74

Query: 75  NHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED 134
           N HL K+WPYVNEAASELIK+S EP+LE+YRP ILS+LKFSKFTLGTVAPQFTGVSIIED
Sbjct: 75  NSHLTKIWPYVNEAASELIKTSAEPILEEYRPMILSALKFSKFTLGTVAPQFTGVSIIED 134

Query: 135 GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAA 194
           GG GVTMELE+QWD N SIIL IKT +G+ALPVQVKN+GFTGVFRLIF+PLV+EFPGF A
Sbjct: 135 GGDGVTMELEVQWDGNPSIILDIKTLVGLALPVQVKNVGFTGVFRLIFKPLVNEFPGFGA 194

Query: 195 VSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYS 254
           V YSLR+KKKLDF LKV+GGDISTIPGL D+IE  I DA+EDSITWPVRKIVPILPGDYS
Sbjct: 195 VCYSLRQKKKLDFTLKVIGGDISTIPGLYDAIEGAIRDAVEDSITWPVRKIVPILPGDYS 254

Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 314
           +LELKPVG LEVKLVQAK LTNKD+IGKSDPYAVL++RPL  +TKKSKTINNDLNPIWNE
Sbjct: 255 DLELKPVGILEVKLVQAKELTNKDIIGKSDPYAVLYIRPLRNRTKKSKTINNDLNPIWNE 314

Query: 315 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQR 374
           HFEFIVED STQHL V++YDDEG+QSSELIGC  ++L ELEPGK+KDVWLKLVKDL++QR
Sbjct: 315 HFEFIVEDASTQHLFVKVYDDEGLQSSELIGCTDIKLSELEPGKIKDVWLKLVKDLEIQR 374

Query: 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELE 434
           D K RGQVHLELLYCP+G EN FTNPFA N+SMTSLEKV       LK  +NG ++   E
Sbjct: 375 DNKNRGQVHLELLYCPYGTENSFTNPFARNYSMTSLEKV-------LKGSSNGIDSNGNE 427

Query: 435 KDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLN 494
            +A+Q+++EVIIRGVLSVTVI AE+LPA D MGK+DP+VVLT+KK+ET+NKTRVVN+ LN
Sbjct: 428 SEAAQRKKEVIIRGVLSVTVISAEDLPAVDFMGKSDPFVVLTLKKAETKNKTRVVNNSLN 487

Query: 495 PIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTK 554
           P+WNQTFDFVVEDGLHDML+ EV+DHDTFGKDYMGR ILTLTR ILEGEY + FELDG K
Sbjct: 488 PVWNQTFDFVVEDGLHDMLLVEVYDHDTFGKDYMGRVILTLTRAILEGEYKERFELDGAK 547

Query: 555 SGKLKLHLKWMPQPIYRDT 573
           SG L LHLKWMPQ IYRD+
Sbjct: 548 SGFLNLHLKWMPQSIYRDS 566

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478159|ref|NP_172041.2| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|75301121|sp|Q8L706.1|SYT5_ARATH RecName: Full=Synaptotagmin-5; AltName: Full=NTMC2T2.1; AltName: Full=Synaptotagmin E gi|22655178|gb|AAM98179.1| Ca2+-dependent lipid-binding protein, putative [Arabidopsis thaliana] gi|31711980|gb|AAP68346.1| At1g05500 [Arabidopsis thaliana] gi|110737090|dbj|BAF00497.1| putative Ca2+-dependent lipid-binding protein [Arabidopsis thaliana] gi|332189725|gb|AEE27846.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/573 (74%), Positives = 500/573 (87%), Gaps = 13/573 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF  G+V+GL+VG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVS+I+   +G+T+EL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL++QRDTK RG+VHLELLY P+G  N   NPF  + SMTSLE+VL N    
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTS-SMTSLERVLKN---- 415

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
                   +  + E  +S+KR++VI+RGVLSVTVI AE +P  DLMGKADPYVVL+MKKS
Sbjct: 416 --------DTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKS 467

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 540
             ++KTRVVND LNP+WNQTFDFVVEDGLHDML+ EVWDHDTFGKDY+GRCILTLTRVI+
Sbjct: 468 GAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIM 527

Query: 541 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 573
           E EY D + LD +K+GKL+LHLKWM Q IYRD+
Sbjct: 528 EEEYKDWYPLDESKTGKLQLHLKWMAQSIYRDS 560

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L706	SYT5_ARATH	No assigned EC number	0.7486	0.9773	1.0	yes	no
A0JJX5	SYT4_ARATH	No assigned EC number	0.7008	0.9877	0.9947	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006418001 SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (583 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	573
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-35
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-27
cd00030	102	cd00030, C2, C2 domain	1e-26
pfam00168	85	pfam00168, C2, C2 domain	2e-25
cd00030	102	cd00030, C2, C2 domain	3e-25
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-23
pfam00168	85	pfam00168, C2, C2 domain	2e-22
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-20
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	1e-19
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	5e-18
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	3e-17
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	9e-17
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-16
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	5e-16
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	8e-16
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-15
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-15
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	6e-15
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	7e-15
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	4e-14
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	6e-14
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-13
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-13
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-13
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-12
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	1e-12
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-12
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-12
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-12
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-12
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	3e-12
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-12
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	5e-12
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	6e-12
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	7e-12
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	9e-12
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-11
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-11
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-11
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-11
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	3e-11
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	5e-11
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	6e-11
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-10
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-10
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-10
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-10
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	2e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-10
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	3e-10
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	3e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	4e-10
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	4e-10
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-10
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	7e-10
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-09
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-09
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	1e-09
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	1e-09
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-09
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-09
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	2e-09
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	2e-09
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-09
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	2e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-09
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	2e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	3e-09
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	3e-09
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	4e-09
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	4e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	4e-09
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	4e-09
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	9e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-08
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-08
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	1e-08
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	1e-08
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	2e-08
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	2e-08
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-08
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-08
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	6e-08
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	8e-08
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	8e-08
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	1e-07
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	1e-07
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-07
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	1e-07
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	1e-07
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-07
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	2e-07
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	3e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	5e-07
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	8e-07
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	9e-07
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-06
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-06
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	2e-06
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	2e-06
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	2e-06
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	3e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-06
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	4e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	4e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	6e-06
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	8e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	9e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	1e-05
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	1e-05
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	2e-05
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-05
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	3e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	4e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	7e-05
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	9e-05
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	1e-04
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	2e-04
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-04
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-04
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	6e-04
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	8e-04
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	8e-04
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	0.002
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	0.002
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	0.002
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	0.003
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	0.004

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  141 bits (356), Expect = 4e-35
 Identities = 121/538 (22%), Positives = 202/538 (37%), Gaps = 103/538 (19%)

Query: 71  LTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVS 130
           + WLN  L+K WP +  + S+ +   V   L +  P  + +L   +FTLG+  P+  G+ 
Sbjct: 223 VEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIR 282

Query: 131 IIEDGGSGVTMELEMQWDA-------------------NSSIILAIK--TRLGVA-LPVQ 168
                 S     + M  D                    N  I L +K     G   LP+ 
Sbjct: 283 SYPSTESDT---VVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPIL 339

Query: 169 VKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG-----DISTIPGLS 223
           V+++ F G  R+    L+ ++P    VS+ L E  + DF L  +GG     DI  IPGLS
Sbjct: 340 VEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVDIFAIPGLS 398

Query: 224 DSIEATIHDAIEDSITWPVRKIVPI-LPGDYSELELKPVGTLEVKLVQAKGLTNKDLI-- 280
             I+  I+  +   +  P    + I +    +      +G +EVK+  A+GL   D    
Sbjct: 399 RFIQEIINSTLGPMLLPP--NSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTIN 456

Query: 281 GKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336
           G  DPY  +     V        K++   N LNP+WNE F +I+ +  T  L + +YD  
Sbjct: 457 GTVDPYITVTFSDRVIG------KTRVKKNTLNPVWNETF-YILLNSFTDPLNLSLYDFN 509

Query: 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ--RDTKYRGQVHLELLYCPFGME 394
             +S +++G  Q+ L  L    VK       K+   +  R+TK  G++  +L + P   +
Sbjct: 510 SFKSDKVVGSTQLDLALLHQNPVK-------KNELYEFLRNTKNVGRLTYDLRFFPVIED 562

Query: 395 NVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTV 454
                                                  E   S +  E    G+L VT+
Sbjct: 563 K-------------------------------------KELKGSVEPLEDSNTGILKVTL 585

Query: 455 ILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDM 512
              + L             + T  K    T           +P WN  ++ +V D  +  
Sbjct: 586 REVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTN----HPSWNLQYNVLVTDRKNSS 641

Query: 513 LIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIY 570
           +    +D  +     +     TL  +I      D F +   ++ K ++ +    +PIY
Sbjct: 642 IKVVTFDVQS--GKVIATEGSTLPDLIDRTL--DTFLVFPLRNPKGRIFITNYWKPIY 695

Length = 1227

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score =  106 bits (265), Expect = 2e-27
 Identities = 37/101 (36%), Positives = 54/101 (53%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           TL VK++ A+ L  KD  GKSDPY  + +   P++ KK+K + N LNP+WNE FEF V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 363
                L + +YD +     + IG   + L +L  G   +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  103 bits (259), Expect = 1e-26
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V +++A+ L  KDL GKSDPY  + +    ++  K+K + N LNP+WNE FEF V D 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE-PGKVKDVWLKL 366
            +  L V ++D +     + +G  ++ L EL   GK  ++WL L
Sbjct: 59  ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 99.7 bits (249), Expect = 2e-25
 Identities = 33/85 (38%), Positives = 45/85 (52%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V ++ AK L  KDL GKSDPY  + +    + TKK+K + N LNP+WNE F F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQ 348
               L + +YD +     + IG   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 99.8 bits (249), Expect = 3e-25
 Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L VTVI A NLPA DL GK+DPYV +++   +   KT+VV + LNP+WN+TF+F V D  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKF-KTKVVKNTLNPVWNETFEFPVLDPE 59

Query: 510 HDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTD 546
            D L  EVWD D F KD ++G   + L+ ++  G+  +
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGE 97

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 94.1 bits (234), Expect = 3e-23
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-KTRVVNDCLNPIWNQTFDFVVED 507
            L+V +I A NLP  D  GK+DPYV +++        KT+VV + LNP+WN+TF+F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 508 GLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDC 547
                L  EV+D D FG+D ++G+  + L+ ++L G +   
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 91.2 bits (227), Expect = 2e-22
 Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-KTRVVNDCLNPIWNQTFDFVVEDG 508
           L VTVI A+NLP  DL GK+DPYV +++   +    KT+VV + LNP+WN+TF F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 509 LHDMLIAEVWDHDTFGKD-YMGRCI 532
               L  EV+D+D FGKD ++G   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 86.2 bits (214), Expect = 3e-20
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 18/131 (13%)

Query: 262 GTLEVKLVQAKGLTNKDLI------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEH 315
           G L + +++A+ L  KD        GKSDPY ++ V     +T KSK I  +LNP WNE 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKENLNPKWNEV 57

Query: 316 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRD 375
           +E +V++   Q L + ++D++  +   L G   + L  +E     D WL L    DV+  
Sbjct: 58  YEAVVDEVPGQELEIELFDEDPDKDDFL-GRLSIDLGSVEKKGFIDEWLPLE---DVK-- 111

Query: 376 TKYRGQVHLEL 386
               G++HL+L
Sbjct: 112 ---SGRLHLKL 119

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 84.7 bits (210), Expect = 1e-19
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 8/123 (6%)

Query: 448 GVLSVTVILAENLPASDLM------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTF 501
           GVL + VI A++L A D        GK+DPYV++  +      K++V+ + LNP WN+ +
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIV--RVGAQTFKSKVIKENLNPKWNEVY 58

Query: 502 DFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLH 561
           + VV++     L  E++D D    D++GR  + L  V  +G   +   L+  KSG+L L 
Sbjct: 59  EAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLK 118

Query: 562 LKW 564
           L+W
Sbjct: 119 LEW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 80.2 bits (198), Expect = 5e-18
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 448 GVLSVTVILAENLPASDLM--GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
           GVL V V+ A++L A D    GK+DPY +L++     R KT+ + + LNP WN   +F +
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV--GAQRFKTQTIPNTLNPKWNYWCEFPI 58

Query: 506 EDGLHDMLIAEVWDHDTF-GKDYMGRCILTLTRVILEGE-------YT---DCFELDGTK 554
               + +L   +WD D F GKDY+G   + L  V  +G+        T            
Sbjct: 59  FSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVV 118

Query: 555 SGKLKLHLKW 564
           SG++ L   W
Sbjct: 119 SGEIHLQFSW 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETR-NKTRVVNDCLNPIWNQTFDFVVED 507
           + ++ ++ AENL A    G +DPYV L     + R  KTR + D LNP W++ F+  V  
Sbjct: 2   LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPA 61

Query: 508 GLHDMLIAEVWDHDTFGK-DYMGRCILTLT 536
           G    + A VWD    GK D  GR  L L 
Sbjct: 62  GEPLWISATVWDRSFVGKHDLCGRASLKLD 91

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 76.5 bits (189), Expect = 9e-17
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTF 501
           +    L+V V  A+NL   D  G +DPYV L +    K+ET+ KT+ +   LNP+WN+TF
Sbjct: 10  VKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETF 69

Query: 502 DFVVEDGLHD-MLIAEVWDHDTFGK-DYMG 529
            F ++    D  L  EVWD D   + D+MG
Sbjct: 70  TFDLKPADKDRRLSIEVWDWDRTTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 74.1 bits (183), Expect = 4e-16
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 12/116 (10%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMK-----KSETRNKTRVVNDCLNPIWNQTFDFV 504
           L+V VI AENLP++D  GK+DP+V   +      K++T  KT      LNP+WN++F+  
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKT------LNPVWNESFEVP 54

Query: 505 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLK 559
           V   +  +L  EV+D D  GK D +G   + L+ +  E        LDG   GKL 
Sbjct: 55  VPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLG 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 74.7 bits (184), Expect = 5e-16
 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
            G+L V V+   NL   D    +DPYVVLT+   +   KTRV+   LNP+WN+     V 
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKV--KTRVIKKNLNPVWNEELTLSVP 57

Query: 507 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVI 539
           +     L  EV+D DTF KD  MG   + L  ++
Sbjct: 58  N-PMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLV 90

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 73.4 bits (181), Expect = 8e-16
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V ++ A+ L + D  GKSDP+   ++    EK  K+KTI   LNP+WNE FE  V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKTLNPVWNESFEVPVPSR 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369
               L V +YD +     +L+G A + L +LEP +  ++ L L   
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQ 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           G L V +V+AK L  KD    GKSDPYA+L V     +  K++TI N LNP WN   EF 
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP 57

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDT 376
           +     Q L + ++D +     + +G   + L E+         D W+ L K     + +
Sbjct: 58  IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITL-KSTRPGKTS 116

Query: 377 KYRGQVHLEL 386
              G++HL+ 
Sbjct: 117 VVSGEIHLQF 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           G L+VK+++A GL   D+ GKSDP+ VL +     +T    TI   LNP WN+ F F ++
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQT---HTIYKTLNPEWNKIFTFPIK 57

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
           D     L V +YD++  +  E +G   + L  ++ G+ K  W  L KD  ++   K  G 
Sbjct: 58  D-IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYAL-KDKKLRTRAK--GS 111

Query: 382 VHLELLY 388
           + LE+  
Sbjct: 112 ILLEMDV 118

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 7/107 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-KKSKTINNDLNPIWNEHFEFIVE 321
            L++ L + + L  +D  G SDPY V F      KT  KSKTI  +LNP+W+E F   +E
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPY-VKF--KYGGKTVYKSKTIYKNLNPVWDEKFTLPIE 57

Query: 322 DESTQHLVVRIYD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367
           D  TQ L ++++D D G+   + +G A V L  LE  K  +V LKL 
Sbjct: 58  D-VTQPLYIKVFDYDRGLT-DDFMGSAFVDLSTLELNKPTEVKLKLE 102

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V++++A  +T  DL+   D Y  L++    ++ K++KTI N +NP+WNE FEF ++ +
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               L + + D++ +    L G     + +L+ G+   V   L
Sbjct: 62  VKNVLELTVMDEDYVMDDHL-GTVLFDVSKLKLGEKVRVTFSL 103

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 4/92 (4%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G L V VI A  L A+D+ GK+DP+ VL +  +  R +T  +   LNP WN+ F F ++D
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA--RLQTHTIYKTLNPEWNKIFTFPIKD 58

Query: 508 GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 538
            +HD+L   V+D D   K +++G+  + L  +
Sbjct: 59  -IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSI 89

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 70.8 bits (174), Expect = 9e-15
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           GTLEV L+ AKGL + D +GK DPY ++  R    K+K +K   +  NP WNE F+F VE
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK--GDGRNPEWNEKFKFTVE 58

Query: 322 D---ESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
                    L++RI D +     + IG A + L
Sbjct: 59  YPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 68.8 bits (169), Expect = 4e-14
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED 507
           +L+V V+ A N+   DL+   D YV L +   S+ + +T+ + + +NP+WN+TF+F ++ 
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 508 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKL 560
            + ++L   V D D    D++G  +  ++++ L  +    F L+     +L++
Sbjct: 61  QVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEV 113

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 69.3 bits (170), Expect = 6e-14
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 31/136 (22%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----------------------- 293
              P+  L+V +++AKGL  KD+ G SDPY +L + P                       
Sbjct: 23  AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLK 82

Query: 294 --LPEK-TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVR 350
             +P K  K ++     LNP+WNE F F VED S   L + I+D +     + +GC  + 
Sbjct: 83  DTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIP 138

Query: 351 LCELEPGKVKDVWLKL 366
           L +L    + D W KL
Sbjct: 139 LKDLPSCGL-DSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 448 GVLSVTVILAENLPASDLMGKA-DPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           GVL+VT+  A  L  SD++G   DPYV  ++       +T+V  D  NP+WN+T  +++ 
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETK-YILV 60

Query: 507 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDC---FELDGTKSGKLKLHL 562
           + L + L   V+D +   KD  +G     L+ ++   E  +       +G   G+L   L
Sbjct: 61  NSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDL 120

Query: 563 KWMP 566
           ++ P
Sbjct: 121 RFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF-V 504
           L+V V+ A NLP SD  G +DPYV +++    KK + + KT V    LNP++N+ F F V
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKK-KTSVKKGTLNPVFNEAFSFDV 74

Query: 505 VEDGLHDM-LIAEVWDHDTFGKD-YMGRCIL 533
             + L ++ L+  V D D+ G++  +G+ +L
Sbjct: 75  PAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 65.0 bits (159), Expect = 9e-13
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G L V +I A+ L  +D +GK DPYV++   +++ R       D  NP WN+ F F VE 
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQC-RTQERKSKVAKGDGRNPEWNEKFKFTVEY 59

Query: 508 -GLHDM--LIAEVWDHDTF-GKDYMGRCILTLTRVILEG 542
            G      LI  + D D F   D++G   + L  +  EG
Sbjct: 60  PGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +++A+ L   D  G SDPY  + +    +K KK KT      LNP++NE F F 
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGC 346
           V  E  +   LV+ + D + +  +E+IG 
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIGQ 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 13/129 (10%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIV 320
           GTL V +++A+ L NK  + K DPY VL +      TKK+KT      +P W+E   F +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEI 57

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYR 379
            ++    L V ++DD+  +  +LIG  +V L   L+ G+  D W       ++    +Y 
Sbjct: 58  TEDKKPILKVAVFDDDK-RKPDLIGDTEVDLSPALKEGEFDD-W------YELTLKGRYA 109

Query: 380 GQVHLELLY 388
           G+V+LEL +
Sbjct: 110 GEVYLELTF 118

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 450 LSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF--V 504
           L VTV+ A +LP  D     +PYV   +L  +  +++ +T+ V   LNP WNQTF++  V
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77

Query: 505 VEDGLHDMLI-AEVWDHDTFGK-DYMGRCILTLTRVILEGE 543
             + L +  +   VWD+D  G+ D++G  ++ L   +L+ E
Sbjct: 78  RRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDE 118

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           +G L V +  A+GL   D+IG + DPY    +     +  ++K   +  NP+WNE    +
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSIS-NRRELARTKVKKDTSNPVWNETKYIL 59

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKY 378
           V    T+ L + +YD    +  +LIG A+  L  L +  + +++        ++ R+ K 
Sbjct: 60  VNSL-TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENL------TKNLLRNGKP 112

Query: 379 RGQVHLELLYCP 390
            G+++ +L + P
Sbjct: 113 VGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 13/108 (12%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDFV 504
           V+++ ++  +NLP  D  G +DPYV   +     KS+  +KT      LNP W + FD  
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKT------LNPQWLEQFDLH 54

Query: 505 VEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELD 551
           + D    +L  EVWD DT  KD ++GRC + L+   L  E T   EL+
Sbjct: 55  LFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSA--LPREQTHSLELE 100

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 63.3 bits (155), Expect = 3e-12
 Identities = 22/75 (29%), Positives = 39/75 (52%)

Query: 452 VTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHD 511
           V V+ A NL   D  GK+DPY+ + + K +  ++   + + LNP++ + F+       + 
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNS 63

Query: 512 MLIAEVWDHDTFGKD 526
           +L   V D+D  G D
Sbjct: 64  ILKISVMDYDLLGSD 78

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 442 REVIIRGVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWN 498
           R    R  L VTV    NLP  D     DPYV   +L  K   TR KT V  D LNP+++
Sbjct: 10  RYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFD 69

Query: 499 QTFDFVV--EDGLHDMLIAEVWDHDTF---GKDYMGRCILTLTRVILEGEYTDCFEL 550
           +TF+F V  E+     L   V +  +F    K  +G+ ++ L+ + L   +T  ++L
Sbjct: 70  ETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
             L V ++QA  L   D+ G SDPY  +++  LP+K KK  +K     LNP++NE F F 
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFTFK 73

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           V   +   + LV  +YD +     +LIG  +V L  ++ G V + W  L  
Sbjct: 74  VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 434 EKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCL 493
           EK    + +     G L V ++   +L   +  GK+DPY  ++M      +KT+VV+D L
Sbjct: 1   EKAYLARSQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM--GSQEHKTKVVSDTL 58

Query: 494 NPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGR 530
           NP WN +  F V+D   D+L   V+D D F   D++GR
Sbjct: 59  NPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGR 96

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 30/122 (24%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVL---------TMKKSETRNK-------------- 485
           VL VTVI A+ L A D+ G +DPY +L           +KS+ R                
Sbjct: 29  VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88

Query: 486 ----TRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 541
               T V    LNP+WN+TF F VED  +D L  ++WDHD    D++G   + L  +   
Sbjct: 89  SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC 145

Query: 542 GE 543
           G 
Sbjct: 146 GL 147

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDF 503
           R  L V +I   NL A D  G +DP+V L +K     ++++KT+V    LNP +N+ F +
Sbjct: 12  RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Query: 504 VVEDGLHD----MLIAEVWDHDTFGK--DYMGRCILTLT 536
            ++    D     L   VWD D  GK  DY+G   L + 
Sbjct: 72  DIK--HSDLAKKTLEITVWDKD-IGKSNDYIGGLQLGIN 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 62.4 bits (152), Expect = 9e-12
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 10/100 (10%)

Query: 442 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWN 498
           R V   G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +    LNP +N
Sbjct: 9   RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYN 68

Query: 499 QTFDFVVEDGLHDM----LIAEVWDHDTFGK-DYMGRCIL 533
           ++F F V      +    LI  V D+D  GK D +G+ +L
Sbjct: 69  ESFSFEVP--FEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 8/93 (8%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 503
             ++V +I A NL A D+ G +DPYV + +    K+ E + KT +    LNP++N++F F
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKK-KTVIKKRTLNPVFNESFIF 73

Query: 504 VVE-DGLHDM-LIAEVWDHDTFGK-DYMGRCIL 533
            +  + L +  LI  V D D   + D +G+  L
Sbjct: 74  NIPLERLRETTLIITVMDKDRLSRNDLIGKIYL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 66.3 bits (162), Expect = 3e-11
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 4/120 (3%)

Query: 448  GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
            G L++ +   ENLP+SD  G +DP+V L + +     KT+VV   LNP+WN+ F   V +
Sbjct: 1040 GYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVY-KTKVVKKTLNPVWNEEFTIEVLN 1098

Query: 508  GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLK--LHLKW 564
             + D+L   V D D+  K D +G   + L+++   G       LDG     L   LH  +
Sbjct: 1099 RVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGF 1158

Length = 1227

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT      LNP +NE F F 
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
           V  E  Q  HL+V + D + I  ++ IG
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 23/130 (17%)

Query: 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-----IVEDE 323
           V  K L    L GK D  A +  R      KK++ + N+LNP+WNE FE+        DE
Sbjct: 3   VSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR---G 380
           S   L + + D E +  + LIG A V L +L    + +V   L+       D+  R    
Sbjct: 58  S---LEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL-------DSNGRPTGA 107

Query: 381 QVHLELLYCP 390
            + LE+ Y P
Sbjct: 108 TISLEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTF-- 501
            G L V V  A+NLPA    G +D +V   +L  K  +++ KT VV   +NP+WN TF  
Sbjct: 26  TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVY 85

Query: 502 -DFVVEDGLHDMLIAE--VWDHDTFGKD 526
                ED L    + E  VWDHD    +
Sbjct: 86  DGVSPED-LSQACL-ELTVWDHDKLSSN 111

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           + LV+ K L   D  G SDPY V F   L  +  KSK  +  LNP W E F+  + D+ +
Sbjct: 4   IVLVEGKNLPPMDDNGLSDPY-VKF--RLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           Q L + ++D +  +  E IG  ++ L  L   +   + L+L
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           +++V+A+ L      G SDPY  L       +  K++TI + LNP W+E FE  V     
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD------VWLKLVKDLDVQRDTKYR 379
             +   ++D   +   +L G A ++   L+P +  D      +WL    DLD Q      
Sbjct: 65  LWISATVWDRSFVGKHDLCGRASLK---LDPKRFGDDGLPREIWL----DLDTQ------ 111

Query: 380 GQVHLE 385
           G++ L 
Sbjct: 112 GRLLLR 117

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVL----TMKKSETRNKTRVVNDCLNPIWNQTFDFV- 504
           L  T+I A+ L A D  G +DPYV L       K+ T+ +T+ V+   NP +N+T  +  
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLTYYG 75

Query: 505 --VEDGLHDMLIAEVWDHDTFGKDYMG 529
              ED     L   V D D FG D++G
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRFGNDFLG 102

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 450 LSVTVILAENLP--ASDLMGKADPYVVLTM----KKSETRNKTRVVNDC-LNPIWNQTFD 502
           L++ +I  + LP    D     DPYV + +         + KT+VV +   NP+WN+TF+
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 503 FVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTR 537
           F V       L   V+D D+   D++G+  L L  
Sbjct: 64  FDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDS 98

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
           K +G L VKL+QA+ L  +D  G +DPY  + + P    TK+SK     LNP ++E F F
Sbjct: 13  KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72

Query: 319 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            V  ++   + L V +YD +     E IG  ++ L E++  +  D+W K+
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLNPIWNEH 315
           L   G L + +++A+ L   D+ G SDPY    L       K KK+    N LNP +NE 
Sbjct: 10  LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEA 69

Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367
             F V  E+  +  L++ + D + +  +ELIG  +V       G+ ++ W +++
Sbjct: 70  LVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVG--PNADGQGREHWNEML 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 16/101 (15%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM-----KKSETR--NKTRVVNDCLNPIWNQTFD 502
           L+V +I A +LPA D+ G +DPYV + +     KK ET+   KT      LNP++N+TF 
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKT------LNPVFNETFT 71

Query: 503 F-VVEDGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVIL 540
           F V    L +  L+  V+D D F K D +G   + L  V L
Sbjct: 72  FKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 63.2 bits (154), Expect = 3e-10
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 258  LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFE 317
            ++  G L + L   + L + D  G SDP+  LF+    +   K+K +   LNP+WNE F 
Sbjct: 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE--KSVYKTKVVKKTLNPVWNEEFT 1093

Query: 318  FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK 377
              V +     L + + D +  + ++L+G A++ L +LEPG   +  +     LD +    
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIP----LDGKTFIV 1149

Query: 378  YRGQVHLELLYCPFGMENV 396
              G +H    +      NV
Sbjct: 1150 LDGTLHPGFNFRSKYALNV 1168

Length = 1227

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L + +    NL A D  G +DPYV       +T  K++ +   LNP+W++ F   +ED +
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYG-GKTVYKSKTIYKNLNPVWDEKFTLPIED-V 59

Query: 510 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 541
              L  +V+D+D     D+MG   + L+ + L 
Sbjct: 60  TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELN 92

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND--LNPIWNEHFEFIV 320
           TLE+ ++ A+ L N +L GK   YAV+++ P     K+S  ++ D   NP WNE   F +
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPL 57

Query: 321 EDESTQH----LVVRIYDDEGIQSSELIGCAQVRLCEL 354
           ++   Q     L + +Y +      +LIG  +V L +L
Sbjct: 58  DERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 22/130 (16%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           +S+TV+ A+ L A D  G +DPYV  T++  +T+ +T+ +   LNP+WN+ F F   +  
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYV--TVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS- 59

Query: 510 HDMLIAEVWDHD---------TFGK---DYMGRCILTLTRVILEGEYTDCFELD-----G 552
            D +   VWD D          F +   D++G+ I+ +    L GE    + L+      
Sbjct: 60  SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVR--TLSGEMDVWYNLEKRTDKS 117

Query: 553 TKSGKLKLHL 562
             SG ++LH+
Sbjct: 118 AVSGAIRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK-SKTINNDLNPIWNEHFEFIVED 322
           + + +V A+GL  KD  G SDPY  + V     KTKK +KTI  +LNP+WNE F F   +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQV----GKTKKRTKTIPQNLNPVWNEKFHFECHN 58

Query: 323 ESTQHLVVRIYD-DEGIQS 340
            S+  + VR++D D+ I+S
Sbjct: 59  -SSDRIKVRVWDEDDDIKS 76

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
           G L + + +A  L N + +GK DPY  + V       K ++ TI+N LNP+W+E     V
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
                Q + + + D E +     +G  ++ + +L
Sbjct: 58  TSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVV-NDCLNPIWNQTFDF-VV 505
           G L V V+ A NLP    + K DPY VL +       KT+       +P W++   F + 
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRI--GGVTKKTKTDFRGGQHPEWDEELRFEIT 58

Query: 506 EDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL--DGTKSGKLKLHLK 563
           ED    + +  V+D D    D +G   + L+  + EGE+ D +EL   G  +G++ L L 
Sbjct: 59  EDKKPILKV-AVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 448 GVLSVTVILAENLPASDL-MGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQT-FDFV 504
           GVL VT+  A +LP +D   G +DPYV  +  K  +    TR++   LNP+W +T F  V
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 505 VEDGL--HDMLIAEVWDHDTFGKD 526
             D +   + L   +WD D F  D
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTAD 84

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V++V A+ L  KD  G S  Y  L       + K+++T   DLNP+WNE   F V D 
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL---DFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP 58

Query: 324 S---TQHLVVRIYDDE 336
           S      L V +Y+D 
Sbjct: 59  SRLSNLVLEVYVYNDR 74

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG- 508
           L V V+ A++L   D  G +  YV L       + +TR     LNP+WN+   F V D  
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL--DFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPS 59

Query: 509 --LHDMLIAEVWDH--DTFGKDYMGRCILTLTRVILEGE 543
              + +L   V++       + ++GR  ++ T  +   E
Sbjct: 60  RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSE 98

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 29/127 (22%)

Query: 457 AENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDF---VVEDGLHDM 512
           A +L A+D  G +DP+  V  + +S+    T V+ + L+P W+QT  F    +     ++
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQE---TEVIKETLSPTWDQTLIFDEVELYGSPEEI 66

Query: 513 L------IAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM 565
                  + E++D D+ GKD ++GR +     V L+ E             KL+      
Sbjct: 67  AQNPPLVVVELFDQDSVGKDEFLGRSVAK-PLVKLDLEE--------DFPPKLQWF---- 113

Query: 566 PQPIYRD 572
             PIY+ 
Sbjct: 114 --PIYKG 118

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 14/104 (13%)

Query: 457 AENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDFVVED---G 508
            + L   D  GK+DP++ +  ++SE        +T V+ + LNP+W   F   ++    G
Sbjct: 9   GKKLDKKDFFGKSDPFLEI-SRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNG 66

Query: 509 LHDM-LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 550
            +D  +  EV+D+D+ GK D +G    TL  ++        FEL
Sbjct: 67  DYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLE--FEL 108

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 453 TVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLH-- 510
            V+  +NLP   L GK D    +T +    + KTRV+ + LNP+WN+TF++ +       
Sbjct: 1   LVVSLKNLPG--LKGKGDRIAKVTFR--GVKKKTRVLENELNPVWNETFEWPLAGSPDPD 56

Query: 511 DMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGE 543
           + L   V D++  G++  +G   ++L  ++ EG 
Sbjct: 57  ESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGL 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEF-- 318
            L   +++AKGL   D  G SDPY  L + P   K  K  +KT++   NP +NE   +  
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 319 IVEDE-STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361
           I E++   + L + + D++    ++ +G  ++ L +L+P + K 
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQ 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 502
           G L++T+I A NL A D+ G +DPYV   ++   +   + KT V  + LNP +N+   FD
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 503 FVVEDGLHDMLIAEVWDHDTFG-KDYMGRC 531
              E+  +  LI  V D+D  G  + +G C
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIGVC 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           +L V +  A+NLP +    +  PYV LT+ K ++   K++V     NP+W + F F+V +
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQ---KSKVKERTNNPVWEEGFTFLVRN 57

Query: 508 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTD--CFELDGT 553
             +  L  EV D  T     +G   L L+ ++ E + T    F LD +
Sbjct: 58  PENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 449 VLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF-- 503
            L++ ++ A  LPA D  G +DP+V   +L  KK +   K +  N  LNP WN+TF F  
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN--LNPHWNETFLFEG 74

Query: 504 VVEDGLHDM-LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYT 545
              + L    L  +V D+D F + D +G   L L +V L  E T
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQT 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VV 505
              L+VTV+ A  L   D     D YV +     E R  T V+ +  NP WN TFDF  V
Sbjct: 27  LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKR--TEVIWNNNNPRWNATFDFGSV 83

Query: 506 EDGLHDMLIAEVWDHD-TFGKDYMGRCILTLTR 537
           E      L  EVWD D  +  D +G C +    
Sbjct: 84  ELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEA 116

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDF 503
            L V ++ A NL   D  G +DP+V + +            KT+V    L P+++++F+F
Sbjct: 17  SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEF 76

Query: 504 VV--EDGLHD--MLIAEVWDHDTFGK-DYMGRCILTLTRV 538
            V  E    +  +L+  V D+D  G  D+ G   L L  +
Sbjct: 77  NVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG 508
           V  V V  AE L   D  G ADPYV+  +K      ++ V  D L+P ++    F  +  
Sbjct: 4   VTQVHVHSAEGLSKQDSGGGADPYVI--IKCEGESVRSPVQKDTLSPEFDTQAIFYRKK- 60

Query: 509 LHDMLIAEVWDHDTFGKDYMGRCILT 534
               +  +VW+ +    +++G+  L+
Sbjct: 61  PRSPIKIQVWNSNLLCDEFLGQATLS 86

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           +G L+V++V+   L  +D    SDPY VL    L  +  K++ I  +LNP+WNE     V
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVL---TLGNQKVKTRVIKKNLNPVWNEELTLSV 56

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356
            +     L + ++D +     + +G A++   +LEP
Sbjct: 57  PNPMAP-LKLEVFDKDTFSKDDSMGEAEI---DLEP 88

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L   V+ A +L   D  G +DP+V +     +T   + V   C  P WN+ F+F + +G 
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYN-GQTLETSVVKKSCY-PRWNEVFEFELMEGA 59

Query: 510 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL---------DGTKSGKLK 559
              L  EVWD D   K D++G+ + ++  +    +    F L          G   G L+
Sbjct: 60  DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLR 119

Query: 560 LHLK 563
           L ++
Sbjct: 120 LKVR 123

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VVE 506
           GVL + +  A +L   + +GK DPYV + +     + +T  +++ LNP+W++     V  
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRV-LVNGIVKGRTVTISNTLNPVWDEVLYVPVTS 59

Query: 507 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLK 563
                 L  EV D++  GKD  +G   + ++ +I + E    +     +  +LK  L 
Sbjct: 60  PNQKITL--EVMDYEKVGKDRSLGSVEINVSDLIKKNE-DGKYVEYDDEEERLKRLLS 114

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V L  AK L       +  PY  L V    + T+KSK      NP+W E F F+V + 
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNP 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKL 366
             Q L + + DD+  +S   +G   + L EL  EP    D    L
Sbjct: 59  ENQELEIEVKDDKTGKS---LGSLTLPLSELLKEPDLTLDQPFPL 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE------KTKKSKTINNDLNPIWNEHFE 317
           L V+++ A+ L   D  G SDP+    V  LP        T K++     L P+++E FE
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVK--VELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75

Query: 318 FIVEDESTQH----LVVRIYDDEGIQSSELIGCAQVRL 351
           F V  E        L+  + D + + S++  G A + L
Sbjct: 76  FNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKT--INNDLNPIWNEHFEFIVEDES 324
           +  + L +KD++ KSDP+ V++V+        +  +T  I N+LNP +   F      E 
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 325 TQHLVVRIYDDEG----IQSSELIGCAQVRLCEL 354
            Q L   +YD +     +   + +G A+  L E+
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 53.3 bits (129), Expect = 9e-09
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK---KSKTINNDLNPIWNEHFEFIVED 322
           V +V+A+ L  KD  GKSDPY  + +     K K   +   I N LNP++ + FE     
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLG----KKKINDRDNYIPNTLNPVFGKMFELEATL 59

Query: 323 ESTQHLVVRIYDDEGIQSSELIG 345
                L + + D + + S +LIG
Sbjct: 60  PGNSILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V++ +AK L   D  G SDPY  L + P P+    +K+KTI   LNP+WNE F F 
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           +   D+  + L + ++D +    ++ +G     + EL      D W KL
Sbjct: 73  LKPADKDRR-LSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKS--DPYAVLFVRPLP---EKTKKSKTI-NNDLNPIWNEHF 316
           TL +K++  + L        S  DPY  + +  LP       K+K + NN  NP+WNE F
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           EF V       L   +YD++     + +G A + L  L  G
Sbjct: 63  EFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQG 102

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           TL +K+++A  L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F F  E 
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EG 74

Query: 323 ESTQHLVVRI-----YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
              + L  R+      D +    ++ IG   + L +++  + +  W  L
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETR---NKTRVVNDCLNPIWNQTFDFVVE 506
           L+V V+ A +LP  D+ G ADPYV + +   + R    KT V    LNP++N++F F + 
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 507 DGLHDMLIAE--VWDHDTFGK-DYMGRCIL 533
               + +  E  V D D   K + +GR +L
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           + +TV+ A+ L   DL    DP+ V+T+   +T   T V    L+P WN+ FD  V  G 
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTH-STDVAKKTLDPKWNEHFDLTV--GP 58

Query: 510 HDMLIAEVWDHDTFGK 525
             ++  +V+D   F K
Sbjct: 59  SSIITIQVFDQKKFKK 74

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           + + ++ A GL  +DL    DP+AV+ V     +T  +      L+P WNEHF+  V   
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKTLDPKWNEHFDLTVGPS 59

Query: 324 STQHLVVRIYDDEGIQ--SSELIGCAQVR 350
           S   + ++++D +  +      +GC ++R
Sbjct: 60  SI--ITIQVFDQKKFKKKDQGFLGCVRIR 86

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVL---------FVRPLPEKTKKSKTINNDLNPIWNE 314
           L VK++    L  KD+ G SDPY  +          +  +  KT K KT    LNP WNE
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KT----LNPKWNE 56

Query: 315 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
            F F V +     L+  ++D+  +   + +G  +V L  L   
Sbjct: 57  EFFFRV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTE 98

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           +L +++V+ K L  KD+ G SDPY +  V+   E   ++ T+   LNP W E  E+ V  
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCI--VKVDNEVIIRTATVWKTLNPFWGE--EYTVHL 56

Query: 323 ESTQH-LVVRIYDDEGIQSSELIG--CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
               H +   + D++ +   ++IG       +    P  + D W+ L +   V  D + +
Sbjct: 57  PPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGI-DGWMNLTE---VDPDEEVQ 112

Query: 380 GQVHLEL 386
           G++HLEL
Sbjct: 113 GEIHLEL 119

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 263 TLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-IV 320
            L V L++A+ L  +       DP+  + + P   ++ +SK      NP ++E F F + 
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74

Query: 321 EDESTQH-LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
             E  +  L + +YD +      +IG     L +L+  K   VW  L  
Sbjct: 75  FKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
             + V +++A+ L   D+ G SDPY  +++    ++ +K KT+     LNP++NE F F 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIG 345
           +  E  +   L++ + D + +  ++LIG
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 13/113 (11%)

Query: 448 GVLSVTVILAENLPASD-LMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
           G L V +    NL  +D    +++PYV   +L  K  +++ KT V  +  NP++N+T  +
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 504 VVEDGLHDMLIAE-----VWDHDTFG-KDYMGRCILTLTRVILEGEYTDCFEL 550
            +       L        VW HD FG   ++G   + L    L+ + ++ + L
Sbjct: 74  HIS---KSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 271 AKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFIVED---- 322
            K L  KD  GKSDP+  +  R   + T     +++ I N LNP+W   F   ++     
Sbjct: 9   GKKLDKKDFFGKSDPFLEIS-RQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCNG 66

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361
           +  + + + +YD +     +LIG  +  L EL      +
Sbjct: 67  DYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLE 105

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 457 AENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDFVVEDGLHD 511
             NL   D++ K+DP+VV+ +K   +       +T V+ + LNP +  T  F V+    +
Sbjct: 9   CRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTT--FTVDYYFEE 66

Query: 512 M--LIAEVWDHDTFGK-----DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 557
           +  L  EV+D D+  K     D++G    TL  ++          L G K   
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGGKGKG 119

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDF 503
           +L V V+   +L   D+ G +DPYV +++   +        +T+ +   LNP WN+ F F
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 504 VVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDC 547
            V    H +L  EV+D +   +D ++G+  + L  +  E    + 
Sbjct: 61  RVNPREHRLLF-EVFDENRLTRDDFLGQVEVPLNNLPTETPGNER 104

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 447 RGVLSVTVILAENLPASDLMGKA-DPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFD 502
            G L V V+ A+NLP  D  G   DPYV   +    +  T+ KT+VV    NP +N+   
Sbjct: 12  NGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEM-- 67

Query: 503 FVVEDGLHDMLIAE------VWDHDTFG-KDYMGRCILTLTRVILEGEYTDCFEL 550
            +V DGL    + +      VW HD+    +++G   + L ++ L  E    + L
Sbjct: 68  -LVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLP-EKTKKSKTINNDLNPIWNEH 315
           L   G L V +++AK L   D+   SDP+  +  V  L   KTKK+  +   ++P +NE 
Sbjct: 10  LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNES 69

Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIG 345
           F F V  E  ++  LV  +Y      S++ IG
Sbjct: 70  FSFKVPQEELENVSLVFTVYGHNVKSSNDFIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 253 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT----KKSKTINNDL 308
           YS    K    L V + + + L   D     DPY  L++  LP+K+    +K+    ++L
Sbjct: 11  YSSQRQK----LIVTVHKCRNLPPCDSSDIPDPYVRLYL--LPDKSKSTRRKTSVKKDNL 64

Query: 309 NPIWNEHFEFIV--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGK 358
           NP+++E FEF V  E+   + L V + + +   S E  L+G   + L +L+  K
Sbjct: 65  NPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK 118

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHF-- 316
           GTL V ++ AK L   D  G   DPY   ++ P P+KT K KT  +    NP +NE    
Sbjct: 13  GTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVY 70

Query: 317 -EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               VED   + L V ++  + +  +E +G   + L +L+  +  + W  L
Sbjct: 71  DGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 450 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVED 507
           L V V+ A +LP  D      D +V +    +    KT VV   LNP+WN + F F V+D
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTT--YKTDVVKKSLNPVWNSEWFRFEVDD 58

Query: 508 GL--HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTD 546
                + L   V DHDT+   D +G+  + L  ++L+   + 
Sbjct: 59  EELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQ 100

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
             L V +++   L   D  G SDP+  L+++P   K  K KT      LNP +NE F + 
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIG 345
           +   D + + L + ++D +  +S++ IG
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIG 100

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L +TV  A  L ++    K DPYV +T+     + KT V     NP WN+ F  +V    
Sbjct: 4   LQITVESA-KLKSNSKSFKPDPYVEVTVDGQPPK-KTEVSKKTSNPKWNEHFTVLVTP-- 59

Query: 510 HDMLIAEVWDHDTFGKDYM 528
              L  +VW H T   D +
Sbjct: 60  QSTLEFKVWSHHTLKADVL 78

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L++ +  AK L +     K DPY  + V   P   KK++      NP WNEHF  +V  +
Sbjct: 4   LQITVESAK-LKSNSKSFKPDPYVEVTVDGQP--PKKTEVSKKTSNPKWNEHFTVLVTPQ 60

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKL 366
           ST     +++    +++  L+G A + L ++     GK+++V L L
Sbjct: 61  STLEF--KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTL 104

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK----TINNDLNPIWNEHFE 317
             L V ++QA+ L  +D     +PY  +++  LP++++KSK    T+   LNP WN+ FE
Sbjct: 16  SQLIVTVLQARDLPPRDDGSLRNPYVKVYL--LPDRSEKSKRRTKTVKKTLNPEWNQTFE 73

Query: 318 F 318
           +
Sbjct: 74  Y 74

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 26/130 (20%)

Query: 447 RGVLSVTVILAENLPASDL-MGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDF- 503
           +  L V +I   +LPA D   G +DPYV L  + + E + KTRV+    NP++++TF F 
Sbjct: 15  KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFY 74

Query: 504 ------VVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELDGTKSG 556
                 + +  LH  +++     D + +D  +G  +  L               D    G
Sbjct: 75  GIPYNQLQDLSLHFAVLS----FDRYSRDDVIGEVVCPLA------------GADLLNEG 118

Query: 557 KLKLHLKWMP 566
           +L +  +  P
Sbjct: 119 ELLVSREIQP 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 22/126 (17%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPEKTKKSKTINNDLNPIWNEH--FEFIV 320
           L   + QA+ L   D  G SDP+A V F+     ++++++ I   L+P W++   F+ + 
Sbjct: 3   LRAYIYQARDLLAADKSGLSDPFARVSFL----NQSQETEVIKETLSPTWDQTLIFDEVE 58

Query: 321 EDESTQHL-------VVRIYDDEGIQSSELIGCAQVR------LCELEPGKVKDVWLKLV 367
              S + +       VV ++D + +   E +G +  +      L E  P K++  W  + 
Sbjct: 59  LYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ--WFPIY 116

Query: 368 KDLDVQ 373
           K     
Sbjct: 117 KGGQSA 122

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 8/93 (8%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 503
           G L+V +I A+ L  +D+   +DP+V + +    K  +T+ KT  +   ++P +N++F F
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTK-KTSCMRGTIDPFYNESFSF 72

Query: 504 -VVEDGLHDM-LIAEVWDHDTFGK-DYMGRCIL 533
            V ++ L ++ L+  V+ H+     D++GR ++
Sbjct: 73  KVPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L VTVI A++L  SD     + +V   +     R +     +  NP WN+   FV  +  
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRN-GNPSWNEELMFVAAEPF 60

Query: 510 HDMLIAEVWDHDTFGKD-YMGRCILTLTRV 538
            D LI  V D     KD  +GR ++ L  +
Sbjct: 61  EDHLILSVEDRVGPNKDEPLGRAVIPLNDI 90

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 263 TLEVKLVQAKGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           +L++K+ +AK L          D Y    V    E+  ++KT+   L P + E F F + 
Sbjct: 1   SLKIKIGEAKNLPPRSGPNKMRDCYCT--VNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP 58

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
             + +HL   IYD + ++   +IG   ++  +L     KD W  L     V  D++ +G+
Sbjct: 59  -RTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQP---VDADSEVQGK 114

Query: 382 VHLEL 386
           VHLEL
Sbjct: 115 VHLEL 119

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 272 KGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330
           KGL T++   G   PYA L++    +    ++      NP WN   EF+V D     + V
Sbjct: 1   KGLDTSESKTGLLSPYAELYLNG--KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTV 58

Query: 331 RIYDDEGIQSSELIGCAQVRLCEL 354
            + DD   +   ++G   + L +L
Sbjct: 59  VVKDD-RDRHDPVLGSVSISLNDL 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 59/289 (20%), Positives = 93/289 (32%), Gaps = 58/289 (20%)

Query: 239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTN-KDLIGKSDPYAVLFVRPLPEK 297
            +PV +    L G    LE    G L+V L + K L             A L+     ++
Sbjct: 556 FFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNK--SAELYTNA--KE 611

Query: 298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
              +  +    +P WN  +  +V D     + V  +D    QS ++I      L +L   
Sbjct: 612 VYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDV---QSGKVIATEGSTLPDL--- 665

Query: 358 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNG 417
                       +D   DT                   VF                    
Sbjct: 666 ------------IDRTLDTFL-----------------VFPLR----------------N 680

Query: 418 EKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM 477
            K      N  + I     +S K       G + V+V  A +L      GK+DPY    +
Sbjct: 681 PKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYAT-VL 739

Query: 478 KKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 526
             +  + +T   +  LNPIWN+   +V     +  L  E  D++  G D
Sbjct: 740 VNNLVKYRTIYGSSTLNPIWNE-ILYVPVTSKNQRLTLECMDYEESGDD 787

Length = 1227

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V +++A+ L   D     + +    +     +T+ S+T N   NP WNE   F+  + 
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNG--NPSWNEELMFVAAEP 59

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE----PGKVKDVWLKLVKDLDVQRD---T 376
              HL++ + D  G    E +G A + L ++E       V   W  L +           
Sbjct: 60  FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR 119

Query: 377 KYRGQVHLEL 386
           K+  ++HL L
Sbjct: 120 KFASRIHLRL 129

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           L V++++ + L  K   G  DP+A + +       TK++K      NP ++E F F +  
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
             +        ++E ++ SEL    +V L         D +L  V+
Sbjct: 60  GFSYEKKSFKVEEEDLEKSEL----RVELWHASMV-SGDDFLGEVR 100

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           +G L V +V+ + L   +  GKSDPY  +    +  +  K+K +++ LNP WN   +F V
Sbjct: 14  IGRLMVVIVEGRDLKPCNSNGKSDPYCEV---SMGSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
           +D     L + ++D +     + +G  ++R+ ++
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADI 104

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVEDG 508
           L +T+I AE+L   +L GK   Y V+ +     +  T V  D   NP WN+T  F +++ 
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWI-DPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60

Query: 509 L----HDMLIAEVWDHDTFGKD 526
           L       L  EV+       D
Sbjct: 61  LLQQGRLALTIEVYCERPSLGD 82

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
            L   +++A+ L  KD  G SDP+  +F      +T ++  +     P WNE FEF + +
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELME 57

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
            +   L V ++D + +  ++ +G     +  L+  K ++ W +L+   D + + +  G
Sbjct: 58  GADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLP--DPRAEEESGG 113

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 14/116 (12%)

Query: 448  GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE- 506
            G L+VT+    NL  S  MG  + +  LT+     R +T+VV+   +P W + F +  + 
Sbjct: 1980 GSLTVTIKRGNNLKQS--MGNTNAFCKLTLGNGPPR-QTKVVSHSSSPEWKEGFTWAFDS 2036

Query: 507  ----DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL--DGTKSG 556
                  LH  +  +    +TFGK  +G+  + + RV++EG Y+  + L  +  K G
Sbjct: 2037 PPKGQKLH--ISCK--SKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDG 2088

Length = 2102

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 13/128 (10%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF--IV 320
           +L +++++AK L +K   G  DPY  + +     +  ++KT+   LNP W E F F    
Sbjct: 1   SLRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVE-KLNPFWGEEFVFDDPP 54

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
            D +   L     D        +IG  +V L +L+ G+ KD W  L     V  D++ +G
Sbjct: 55  PDVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTP---VDPDSEVQG 109

Query: 381 QVHLELLY 388
            V L   Y
Sbjct: 110 SVRLRARY 117

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L V V+ A  LPA       DP V + +     +  T+ +    NP WNQ F F  +   
Sbjct: 2   LYVRVVKARGLPA----NSNDPVVEVKL--GNYKGSTKAIERTSNPEWNQVFAFSKDRLQ 55

Query: 510 HDMLIAEVWDHDTFGKDYMGRC 531
              L   VWD D    D++G  
Sbjct: 56  GSTLEVSVWDKDKAKDDFLGGV 77

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 13/113 (11%)

Query: 248 ILPGDYSELELKPV--GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK--- 302
           + P     L+ K    G L V + +AK L      G SD +   ++  LP+K+KKSK   
Sbjct: 11  VPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL--LPDKSKKSKQKT 68

Query: 303 -TINNDLNPIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
             +   +NP+WN  F +     ED S   L + ++D + + S++ +G   VRL
Sbjct: 69  PVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGG--VRL 119

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L + ++  +NLPA D+ G +DPY ++ +  +E   +T  V   LNP W + +   +  G 
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKV-DNEVIIRTATVWKTLNPFWGEEYTVHLPPGF 60

Query: 510 HDMLIAEVWDHDTFGK-DYMGRCILT 534
           H +    V D DT  + D +G+  LT
Sbjct: 61  HTVSFY-VLDEDTLSRDDVIGKVSLT 85

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L VK ++A GL+     G S+PY VL +   P+K + S   N   NP W+EHF F +   
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTS-NPFWDEHFLFELSPN 57

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
           S + L+  +YD+     S+ +G A V   EL 
Sbjct: 58  SKE-LLFEVYDNGKKSDSKFLGLAIVPFDELR 88

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +++A+ L   D+ G +DPY  + +    ++  K KT      LNP++NE F F 
Sbjct: 15  NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74

Query: 320 VEDESTQHLVVRI--YDDEGIQSSELIG 345
           +  E  + + V     D + +  +E+IG
Sbjct: 75  IPSEELEDISVEFLVLDSDRVTKNEVIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 262 GTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTK--KSKTI--NNDLNPIWNEHF 316
           G+LEV + + + L   D    +S+PY  +++  LP+K+K  K KT    N  NP++NE  
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYL--LPDKSKQSKRKTSVKKNTTNPVFNETL 71

Query: 317 EFIVE 321
           ++ + 
Sbjct: 72  KYHIS 76

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 12/102 (11%)

Query: 448 GVLSVTVILAENLPASDLMGKA----DPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
           GV+ + +    +LP    M +     DP+V+++  +   R  T      LNP++N+   F
Sbjct: 1   GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFR--TSWRRHTLNPVFNERLAF 58

Query: 504 VVEDGLHDM---LIAEVWDHDTF-GKDYMGRCILTLTRVILE 541
            V    H+    +  +V D D F   DY+    L++  ++  
Sbjct: 59  EV--YPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA 98

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 448 GVLSVTVILAENLPASDLMGKADPY--VVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-V 504
           G+L+V +I A NL   D  G ADPY  V L   +S T+ ++++    LNP ++++F F V
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTK-QSKIHKKTLNPEFDESFVFEV 74

Query: 505 VEDGLHD-MLIAEVWDHDTFGKDYMGRCI 532
               L    L   ++D D F +D    CI
Sbjct: 75  PPQELPKRTLEVLLYDFDQFSRD---ECI 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 2/106 (1%)

Query: 462 ASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 521
           +    G   PY  L +        TRV     NP WN + +F+V D     +   V D  
Sbjct: 6   SESKTGLLSPYAELYLNGKLVY-TTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR 64

Query: 522 TFGKDYMGRCILTLTRVILEGEY-TDCFELDGTKSGKLKLHLKWMP 566
                 +G   ++L  +I         F L G   G++++   W P
Sbjct: 65  DRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRISALWKP 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 12/102 (11%)

Query: 431 IELEKDASQKRREVIIRGVLSVTVILAENLPASDL-MGKADPYV---VLTMKKSETRNKT 486
           ++   D   K RE      L V VI  ++L A+D    ++DPYV   +L  K +  + KT
Sbjct: 4   VQFALDYDPKLRE------LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKT 57

Query: 487 RVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGKD 526
            V    LNP++N+T  + VE  +    +L   VW  D+ G++
Sbjct: 58  SVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRN 99

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 448 GVLSVTVILAENLPASD-LMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
             L+V V    NL   D    +++PYV   +L  K  +++ KT +  +  NP++N+T  +
Sbjct: 15  QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKY 74

Query: 504 VVEDGLHDMLIAE-----VWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFEL 550
            +    H  L        VW +D FG++ ++G   + L     + ++ +C  L
Sbjct: 75  SIS---HSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 38/138 (27%)

Query: 262 GTLEVKLVQAKGLTNKDL------------------------------IGKSDPYAVLFV 291
           GTL+V + +A  L N D+                                 SDPYA + +
Sbjct: 7   GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL 66

Query: 292 RPLPEKTKKSKT--INNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQV 349
                  + ++T  I N  NP+WNE F       ++ H+   + D++ +  ++LIG A +
Sbjct: 67  ----AGARVARTRVIENSENPVWNESFHIYCAHYAS-HVEFTVKDNDVV-GAQLIGRAYI 120

Query: 350 RLCELEPGKVKDVWLKLV 367
            + +L  G+  + WL ++
Sbjct: 121 PVEDLLSGEPVEGWLPIL 138

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNE-H 315
           G L V + +A  L   D   G SDPY       F +PL      ++ I  DLNP+W E  
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPL----YSTRIIRKDLNPVWEETW 56

Query: 316 FEFIVEDESTQH--LVVRIYD 334
           F  +  DE      L  R++D
Sbjct: 57  FVLVTPDEVKAGERLSCRLWD 77

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           V +  A+GL+ +D  G +DPY ++       ++ +S    + L+P ++    F  +   +
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKPRS 63

Query: 326 QHLVVRIYDD 335
             + +++++ 
Sbjct: 64  P-IKIQVWNS 72

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-INNDLNPIWNEHFEF--IV 320
           L V +++A+ +  KD  G +  + V  V  LP K +++KT +    NP++NE F F  + 
Sbjct: 18  LTVTVIRAQDIPTKDR-GGASSWQVHLVL-LPSKKQRAKTKVQRGPNPVFNETFTFSRVE 75

Query: 321 EDESTQHLV-VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            +E     +  R+Y  E ++   LIG   V L +L       VWL L
Sbjct: 76  PEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 264 LEVKLVQAKGLT---NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           LEV ++ A+GL     KD  G +D Y V    P   K  +++T+ +  NP WNE + + V
Sbjct: 2   LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVEDSSNPRWNEQYTWPV 58

Query: 321 EDESTQHLVVRIYD------DEGIQSSELIGCAQVRLCELEPGKV 359
            D  T  L V ++D       E +Q   LIG  ++RL  LE  +V
Sbjct: 59  YDPCTV-LTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRV 102

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-I 319
           + TL V +++A GL   D    +D Y  +F      + K+++ I N+ NP WN  F+F  
Sbjct: 27  LATLTVTVLRATGL-WGDYFTSTDGYVKVF---FGGQEKRTEVIWNNNNPRWNATFDFGS 82

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIG-CAQVRLCELEPGKVKD 361
           VE      L   ++D +     +L+G C+ V     E G  +D
Sbjct: 83  VELSPGGKLRFEVWDRDNGWDDDLLGTCSVV----PEAGVHED 121

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L V  I A  L  +   G ++PY VL M +   + ++    +  NP W++ F F +    
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS 58

Query: 510 HDMLIAEVWDHD 521
            ++L  EV+D+ 
Sbjct: 59  KELLF-EVYDNG 69

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF- 503
             L++ V+ A+ L +++  G  + YV +++   K+   R KT  V D  NP++++TF F 
Sbjct: 12  RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD 70

Query: 504 VVEDGLHDMLIAEVW 518
           V E      L+  VW
Sbjct: 71  VNERDYQKRLLVTVW 85

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 21/100 (21%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVV- 505
           LSV V+   +L      G  DP+  +T+    K++T+ +T+V     NP +++ F F + 
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTK-RTKVKKKTNNPRFDEAFYFELT 58

Query: 506 --------------EDGLHDMLIAEVWDHDT-FGKDYMGR 530
                         ED     L  E+W      G D++G 
Sbjct: 59  IGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGE 98

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 263 TLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
            L V +++ + L   D   G SDPY  L +  LPEK  K KT  +    NP+++E F F
Sbjct: 17  ALLVNIIECRDLPAMDEQSGTSDPYVKLQL--LPEKEHKVKTRVLRKTRNPVYDETFTF 73

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	573
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.97
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.9
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.88
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.85
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.83
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.83
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.82
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.82
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.82
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.81
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.81
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.81
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.81
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.81
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.81
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.8
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.79
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.79
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.79
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.79
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.79
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.79
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.79
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.79
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.78
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.78
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.78
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.78
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.78
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.77
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.77
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.77
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.77
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.77
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.77
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.77
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.77
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.76
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.76
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.76
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.76
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.75
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.75
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.75
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.75
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.75
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.75
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.75
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.74
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.74
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.74
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.74
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.74
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.74
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.74
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.74
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.74
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.74
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.74
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.74
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.73
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.73
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.73
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.73
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.73
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.73
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.73
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.72
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.72
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.72
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.72
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.72
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.72
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.72
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.72
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.72
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.71
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.71
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.71
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.71
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.71
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.71
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.7
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.7
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.7
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.69
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.69
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.69
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.69
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.69
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.69
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.69
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.68
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.68
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.68
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.68
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.68
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.68
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.68
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.68
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.67
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.67
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.67
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.67
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.67
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.67
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.67
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.66
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.66
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.66
PLN03008	868	Phospholipase D delta	99.66
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.66
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.66
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.66
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.65
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.65
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.65
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.64
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.64
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.64
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.64
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.64
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.63
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.63
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.63
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.63
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.63
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.63
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.63
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.63
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.63
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.63
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.62
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.62
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.62
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.62
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.62
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.62
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.62
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.61
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.61
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.61
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.61
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.61
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.61
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.61
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.6
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.6
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.6
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.6
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.6
PLN03008	868	Phospholipase D delta	99.6
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.59
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.59
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.59
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.59
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.58
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.58
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.57
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.57
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.55
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.55
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.53
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.53
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.52
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.51
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.51
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.46
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.41
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.38
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.37
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.34
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.3
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.28
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.26
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.24
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.23
PLN02223	537	phosphoinositide phospholipase C	99.2
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.19
PLN02270	808	phospholipase D alpha	99.18
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.17
PF10296	91	DUF2404: Putative integral membrane protein conser	99.15
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.14
PLN02270	808	phospholipase D alpha	99.14
PLN02952	599	phosphoinositide phospholipase C	99.11
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.06
PLN02223	537	phosphoinositide phospholipase C	99.06
PLN02230	598	phosphoinositide phospholipase C 4	99.01
PLN02222	581	phosphoinositide phospholipase C 2	98.97
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.96
PLN02228	567	Phosphoinositide phospholipase C	98.95
PLN02228	567	Phosphoinositide phospholipase C	98.95
PLN02952	599	phosphoinositide phospholipase C	98.93
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.92
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.92
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.91
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.88
PLN02230	598	phosphoinositide phospholipase C 4	98.85
PLN02222	581	phosphoinositide phospholipase C 2	98.8
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.76
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.76
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.76
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.75
PLN02352	758	phospholipase D epsilon	98.66
PLN02352	758	phospholipase D epsilon	98.61
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.6
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.58
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.53
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.32
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.21
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.2
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.01
KOG3532	1051	consensus Predicted protein kinase [General functi	97.89
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.88
PLN02964	644	phosphatidylserine decarboxylase	97.87
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.82
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.75
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.58
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.57
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.39
PLN02964	644	phosphatidylserine decarboxylase	97.23
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.11
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.03
PF15627	156	CEP76-C2: CEP76 C2 domain	96.88
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.6
PF15627	156	CEP76-C2: CEP76 C2 domain	96.55
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.0
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.99
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.45
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.29
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.06
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.99
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.52
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.5
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.41
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	94.22
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	93.41
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.25
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	92.88
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	92.82
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	92.64
KOG1452	442	consensus Predicted Rho GTPase-activating protein	92.47
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	91.59
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	90.85
KOG1452	442	consensus Predicted Rho GTPase-activating protein	90.61
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	90.59
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	90.09
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	89.47
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	88.59
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	87.94
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	87.68
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	86.86
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	85.02
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	84.42
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	81.78
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	81.11
KOG2238	795	consensus Uncharacterized conserved protein TEX2,	80.18

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=2.5e-56  Score=478.17  Aligned_cols=451  Identities=25%  Similarity=0.402  Sum_probs=376.9

Q ss_pred             CcccchHHHHHHHHhhChhhHHHHHHHHHHhHHHHHhhhCCCccceEEEeEEecCCCCceEeEEEEEEc-CCCeEEEEEe
Q 008214           66 SHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE  144 (573)
Q Consensus        66 ~~~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~~p~~l~~i~~~~~~lG~~pP~i~~i~~~~~-~~~~~~le~~  144 (573)
                      .|+|++||||.+|+++||.+++.+++.+.+++|+.|++..|+||+.+.+.+||||++||||.+||.|+. +.+.+.||++
T Consensus       218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~  297 (1227)
T COG5038         218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD  297 (1227)
T ss_pred             cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence            578999999999999999999999999999999999999999999999999999999999999999988 7799999999


Q ss_pred             eEEec---------------CcceEEEEee--eec-eeeeEEEEEEEEEEEEEEEeecCCcCCCeeeEEEEEecccceee
Q 008214          145 MQWDA---------------NSSIILAIKT--RLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLD  206 (573)
Q Consensus       145 ~~~~~---------------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~p~l~  206 (573)
                      +++..               ++.|.|.++.  .+| +++||.|+++.|+|++|++++ |++.+|++..+.++|++.|.+|
T Consensus       298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~d  376 (1227)
T COG5038         298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFD  376 (1227)
T ss_pred             eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCccee
Confidence            99963               3457777753  445 789999999999999999999 9999999999999999999999


Q ss_pred             EEEEEcc-----ccccCCcchHHHHHHHHHHHHHhcccccceeeecCCCCCCcccccCcceEEEEEEEEeeeccCCC--C
Q 008214          207 FKLKVVG-----GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKD--L  279 (573)
Q Consensus       207 f~~~~~g-----~~~~~iP~l~~~~~~~i~~~i~~~~~~P~~~~ipl~~~~~~~~~~~~~G~L~V~v~~a~~L~~~d--~  279 (573)
                      |.++++|     .||+.+|||+.|++++|...++.++++|+.+.+++..-- ......+.|++.|+|.+|++|...+  .
T Consensus       377 f~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m-~~~s~~aIGVv~vkI~sa~~lk~~d~~i  455 (1227)
T COG5038         377 FILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM-AGDSGTAIGVVEVKIKSAEGLKKSDSTI  455 (1227)
T ss_pred             EEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhh-ccccCCeeEEEEEEEeeccCcccccccc
Confidence            9999987     378999999999999999999999999999999764210 1113468999999999999999888  5


Q ss_pred             CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCce
Q 008214          280 IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV  359 (573)
Q Consensus       280 ~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~  359 (573)
                      .+..|||+.+...  +....||++.+++.||+|||+|++.+... ++.|.++|||.+....|+.+|++.++|..|...+.
T Consensus       456 ~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~  532 (1227)
T COG5038         456 NGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPV  532 (1227)
T ss_pred             cCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccc
Confidence            7899999999975  34456999999999999999999998854 56999999999888999999999999999866554


Q ss_pred             eEE-EEEeeecccccCCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHhccCcccccCCCCCcchhhhchhhh
Q 008214          360 KDV-WLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDAS  438 (573)
Q Consensus       360 ~~~-w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (573)
                      ... .+.+      .++.+..|+++..+.|+|.-.+.....+.                    .+..             
T Consensus       533 ~~ne~~e~------~~~~k~vGrL~yDl~ffp~~e~k~~~~~s--------------------~e~~-------------  573 (1227)
T COG5038         533 KKNELYEF------LRNTKNVGRLTYDLRFFPVIEDKKELKGS--------------------VEPL-------------  573 (1227)
T ss_pred             cccceeee------eccCccceEEEEeeeeecccCCccccccc--------------------cCCc-------------
Confidence            332 2322      34678899999999999854332111000                    0000             


Q ss_pred             ccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEE
Q 008214          439 QKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW  518 (573)
Q Consensus       439 ~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~  518 (573)
                          .....|++.+++.++.+|.... ......|++++++. ...+.|+.++.+.+|.||+.+.-.+.+..+..+.+.++
T Consensus       574 ----ed~n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~-keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~  647 (1227)
T COG5038         574 ----EDSNTGILKVTLREVKALDELS-SKKDNKSAELYTNA-KEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTF  647 (1227)
T ss_pred             ----ccCCcceeEEEeeccccccCcc-ccccceeEEEEecc-eEEeccceeeeccCCceeeecceEeccCcceeEEEEec
Confidence                0134699999999999997642 12233458888874 46778888999999999999999999888889999999


Q ss_pred             eCCCCCCceeEEEEEEcceeeecC-eEeEEEEcCCCCCeEEEEEEEEEecCC
Q 008214          519 DHDTFGKDYMGRCILTLTRVILEG-EYTDCFELDGTKSGKLKLHLKWMPQPI  569 (573)
Q Consensus       519 d~~~~~~d~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~G~i~l~l~~~p~~~  569 (573)
                      |..  ..+.+|....+|.+++... ...+||++. .++|+|.++-.|+|.+.
T Consensus       648 d~~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~  696 (1227)
T COG5038         648 DVQ--SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYN  696 (1227)
T ss_pred             ccc--cCceeccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeec
Confidence            876  3578899888888877653 457999998 67899999999999876

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.6e-30  Score=263.93  Aligned_cols=224  Identities=34%  Similarity=0.521  Sum_probs=193.8

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEEEe
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD  334 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v~d  334 (573)
                      |......|.|+|++|++|+.+|..|.+||||++++.+..+.+.+|++.++++||+|||+|.|.|..  .....|.+.|||
T Consensus       162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~  241 (421)
T KOG1028|consen  162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD  241 (421)
T ss_pred             ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence            445678999999999999999966789999999999888788999999999999999999999643  357799999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHh
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL  414 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  414 (573)
                      +|+++++++||++.++|..+........|.++.......  ....|+|.++++|.|                        
T Consensus       242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p------------------------  295 (421)
T KOG1028|consen  242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS--EELAGELLLSLCYLP------------------------  295 (421)
T ss_pred             cCCcccccEEEEEEecCccccccccceeeeccccccCCc--ccccceEEEEEEeec------------------------
Confidence            999999999999999999987777688999997654322  222289999999976                        


Q ss_pred             ccCcccccCCCCCcchhhhchhhhccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCC
Q 008214          415 TNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVND  491 (573)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~  491 (573)
                                                     ..|.|+|.|.+|+||...+..+.+||||++++-..   ..++||.++++
T Consensus       296 -------------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~  344 (421)
T KOG1028|consen  296 -------------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK  344 (421)
T ss_pred             -------------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC
Confidence                                           24899999999999999999999999999999532   34789999999


Q ss_pred             CCCCeeeeEEEEEec--cCCCCEEEEEEEeCCCCCC-ceeEEEEEEcce
Q 008214          492 CLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTR  537 (573)
Q Consensus       492 t~nP~wne~f~f~v~--~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~  537 (573)
                      +.||+|||+|.|.|.  ...+..|.|+|||++..+. ++||++.+....
T Consensus       345 ~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  345 TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            999999999999887  3345689999999999876 699999988875

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.90  E-value=4.1e-23  Score=211.99  Aligned_cols=250  Identities=21%  Similarity=0.347  Sum_probs=200.2

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d  341 (573)
                      ..|.|+|.+|+||+..+..|.+||||.|.+.  .....+|.++.+++.|.|.|+|+|.+.. .-+.|.|.|||.| +++|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D   80 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD   80 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence            4688999999999999999999999999997  3568999999999999999999999873 4568999999999 8999


Q ss_pred             CceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHhccCcccc
Q 008214          342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKAL  421 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (573)
                      +.||.+.|.=.+|...+..+.|+.|.+-   ..+....|+|++++.+.+...                            
T Consensus        81 ~~IGKvai~re~l~~~~~~d~W~~L~~V---D~dsEVQG~v~l~l~~~e~~~----------------------------  129 (800)
T KOG2059|consen   81 DIIGKVAIKREDLHMYPGKDTWFSLQPV---DPDSEVQGKVHLELALTEAIQ----------------------------  129 (800)
T ss_pred             cccceeeeeHHHHhhCCCCccceecccc---CCChhhceeEEEEEEeccccC----------------------------
Confidence            9999999999999887789999999753   346789999999999864111                            


Q ss_pred             cCCCCCcchhhhchhhhccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc--eeEeecccCCCCCCeeee
Q 008214          422 KSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWNQ  499 (573)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~kT~~~~~t~nP~wne  499 (573)
                                               ..-+...+.+++++.+.. ++.+|||+++...+..  ...+|+++++|.+|.|+|
T Consensus       130 -------------------------~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~E  183 (800)
T KOG2059|consen  130 -------------------------SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDE  183 (800)
T ss_pred             -------------------------CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhh
Confidence                                     111222333444544433 4569999999986532  346899999999999999


Q ss_pred             EEEEEeccC---------------CCCEEEEEEEeC-CCCC-CceeEEEEEEcceeeecCeEeEEEEcCCC---------
Q 008214          500 TFDFVVEDG---------------LHDMLIAEVWDH-DTFG-KDYMGRCILTLTRVILEGEYTDCFELDGT---------  553 (573)
Q Consensus       500 ~f~f~v~~~---------------~~~~L~i~V~d~-~~~~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~---------  553 (573)
                      .|.|.+...               ..-.|.+++|+. +... ++|+|++.+++...........||-|...         
T Consensus       184 v~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~  263 (800)
T KOG2059|consen  184 VFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDG  263 (800)
T ss_pred             heeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCC
Confidence            999988633               233678889984 4443 46999999999998867777899999532         


Q ss_pred             -CCeEEEEEEEEEecCCCCC
Q 008214          554 -KSGKLKLHLKWMPQPIYRD  572 (573)
Q Consensus       554 -~~G~i~l~l~~~p~~~~~~  572 (573)
                       .-|.+++.+.|....++++
T Consensus       264 ~~lGslrl~v~y~~D~Vlps  283 (800)
T KOG2059|consen  264 GDLGSLRLNVTYTEDHVLPS  283 (800)
T ss_pred             CCccceeeeEEeeeceeccH
Confidence             3589999999999888765

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.88  E-value=9.5e-22  Score=167.85  Aligned_cols=119  Identities=24%  Similarity=0.446  Sum_probs=103.5

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCC-CCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~  339 (573)
                      .|.|+|+|++|+++++.+ .|++||||++.++   +++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~   75 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT   75 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence            489999999999988777 7999999999997   67789999865 79999999999999754 468999999999999


Q ss_pred             CCCceEEEEEEcc-ccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          340 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       340 ~d~~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      +|++||++.+++. .+..+...+.|++|.+..    .....|+|+++++|
T Consensus        76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~----~~~~~g~i~l~l~y  121 (121)
T cd04016          76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQ----GEDKEGMINLVFSY  121 (121)
T ss_pred             CCceEEEEEEECchhccCCCCccccEeCcCcc----CCCCceEEEEEEeC
Confidence            9999999999996 577788789999996532    34678999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.85  E-value=2.4e-19  Score=194.41  Aligned_cols=339  Identities=25%  Similarity=0.368  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHhcccccce----e---ee---cCCC-CC-Ccc-cccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEe
Q 008214          226 IEATIHDAIEDSITWPVR----K---IV---PILP-GD-YSE-LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR  292 (573)
Q Consensus       226 ~~~~i~~~i~~~~~~P~~----~---~i---pl~~-~~-~~~-~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~  292 (573)
                      +...+.......++.|.+    .   +.   |+.- ++ .+. ....+.|.++|+|..|.+|.+....+++|||+++.+.
T Consensus       662 l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n  741 (1227)
T COG5038         662 LPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN  741 (1227)
T ss_pred             chHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEec
Confidence            345566666666666665    1   11   3321 11 111 2447999999999999999988888999999999997


Q ss_pred             cCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCce---eEEEEE---e
Q 008214          293 PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV---KDVWLK---L  366 (573)
Q Consensus       293 ~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~---~~~w~~---L  366 (573)
                        +..++||-....++||.||+..+..+..+ .+.+.+++.|++..+.|..+|++.+++.++.....   ....+.   .
T Consensus       742 --~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~  818 (1227)
T COG5038         742 --NLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEE  818 (1227)
T ss_pred             --ceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCccc
Confidence              35678888889999999999988888854 56799999999999999999999999999854111   111111   0


Q ss_pred             eecccccCCCcceeEEEEEEEEeecCCCCCcc----------------------CC---CC--------CCCChh---h-
Q 008214          367 VKDLDVQRDTKYRGQVHLELLYCPFGMENVFT----------------------NP---FA--------PNFSMT---S-  409 (573)
Q Consensus       367 ~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~----------------------~~---~~--------~~~~~~---~-  409 (573)
                      ...+. .......|++.+.+.|+|..-.....                      .+   ..        ...++.   + 
T Consensus       819 t~~l~-~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~  897 (1227)
T COG5038         819 TGKLS-LTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDM  897 (1227)
T ss_pred             ccccc-cccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccch
Confidence            11111 11457889999999999843221110                      00   00        000000   0 


Q ss_pred             --------HHHHhccCcc---------------------ccc--------CC-CCCcchh---------h----------
Q 008214          410 --------LEKVLTNGEK---------------------ALK--------SG-ANGTEAI---------E----------  432 (573)
Q Consensus       410 --------~~~~~~~~~~---------------------~~~--------~~-~~~~~~~---------~----------  432 (573)
                              +..+++..+-                     .++        +. ..+....         +          
T Consensus       898 ~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv  977 (1227)
T COG5038         898 YSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRV  977 (1227)
T ss_pred             hhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEe
Confidence                    1122211100                     000        00 0000000         0          


Q ss_pred             -------------------------hchhh-hc---------------------cccccceeeEEEEEEEEeecCCCCCC
Q 008214          433 -------------------------LEKDA-SQ---------------------KRREVIIRGVLSVTVILAENLPASDL  465 (573)
Q Consensus       433 -------------------------~~~~~-~~---------------------~~~~~~~~~~L~V~v~~a~~L~~~~~  465 (573)
                                               +++.. .+                     .......+|.|.|.+..|.||+..+.
T Consensus       978 ~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ 1057 (1227)
T COG5038         978 TKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDE 1057 (1227)
T ss_pred             ccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccccc
Confidence                                     00000 00                     00011347899999999999999999


Q ss_pred             CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ceeEEEEEEcceeeecCeE
Q 008214          466 MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEY  544 (573)
Q Consensus       466 ~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~  544 (573)
                      +|.+||||++.+++ +..++|+++++|+||+|||.|...|.+...+.+.|.|+|++...+ |.||.+.++|+.+..++..
T Consensus      1058 ng~sDpfv~~~ln~-k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~ 1136 (1227)
T COG5038        1058 NGYSDPFVKLFLNE-KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTT 1136 (1227)
T ss_pred             CCCCCceEEEEecc-eecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCcc
Confidence            99999999999986 358999999999999999999999998888999999999998765 7999999999999888877


Q ss_pred             eEEEEcCCCC----CeEEEEEEEEEecCC
Q 008214          545 TDCFELDGTK----SGKLKLHLKWMPQPI  569 (573)
Q Consensus       545 ~~~~~L~~~~----~G~i~l~l~~~p~~~  569 (573)
                      ....+|++..    .|.++..+.|++.+.
T Consensus      1137 n~~i~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038        1137 NSNIPLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred             ceeeeccCcceEecccEeecceecchhhh
Confidence            7788887754    577777777776654

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.85  E-value=2.2e-20  Score=159.40  Aligned_cols=113  Identities=25%  Similarity=0.470  Sum_probs=98.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCC-CCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  525 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-  525 (573)
                      |.|.|+|++|++++..+ .|.+||||++.+++  .++||+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.++. 
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d   77 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD   77 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence            78999999999988777 78999999999986  6779999866 79999999999999854 4679999999999876 


Q ss_pred             ceeEEEEEEcc-eeeecCeEeEEEEcCC----CCCeEEEEEEEE
Q 008214          526 DYMGRCILTLT-RVILEGEYTDCFELDG----TKSGKLKLHLKW  564 (573)
Q Consensus       526 d~lG~~~i~l~-~l~~~~~~~~~~~L~~----~~~G~i~l~l~~  564 (573)
                      ++||.+.+++. .+..+...++||+|.+    ...|+|+|+++|
T Consensus        78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            69999999996 4666666799999976    457999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=1.5e-20  Score=163.66  Aligned_cols=119  Identities=21%  Similarity=0.480  Sum_probs=103.2

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec-----CCCcEEEEEEEeCCCC
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI  338 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~-----~~~~~l~i~v~d~~~~  338 (573)
                      ++|+|++|+||+.++..|.+||||+++++   +++++|++++++.||+|||+|.|.+..     ...+.|.++|||++.+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            47999999999999988999999999997   667899999999999999999999976     3567899999999998


Q ss_pred             CCCCceEEEEEEccccC--CCceeEEEEEeeecccccCCCcceeEEEEEEE
Q 008214          339 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL  387 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~  387 (573)
                      ++|++||++.++|+++.  .+.....|++|.+...  ...+.+|+|+++++
T Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~~~~~Gei~l~~~  126 (126)
T cd08682          78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KDDKERGEIEVDIQ  126 (126)
T ss_pred             CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CCccccceEEEEeC
Confidence            88999999999999987  5667789999974322  34567899999863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.83  E-value=4.2e-20  Score=159.04  Aligned_cols=117  Identities=35%  Similarity=0.567  Sum_probs=102.8

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~  340 (573)
                      |.|+|+|++|++|++.+..+.+||||+++++   ++.++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+ 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence            7899999999999999988999999999997   4677888874 5799999999999998766779999999999865 


Q ss_pred             CCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       341 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      |++||++.+++.++..+.....|++|..      +++..|+|+++++|
T Consensus        77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f  118 (118)
T cd08681          77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF  118 (118)
T ss_pred             CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence            9999999999999877766789999853      34688999999876

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=9.3e-20  Score=157.52  Aligned_cols=121  Identities=33%  Similarity=0.527  Sum_probs=106.9

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      +|+|+|++|++|+..+..|.+||||++++.  +...++|++++++.||+|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~   77 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD   77 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence            478999999999999988999999999986  23578999999999999999999998765 468999999999988999


Q ss_pred             ceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       343 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      +||.+.+++.++..+...+.|++|...    +..+..|+|++.++|.|
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          78 FMGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP  121 (121)
T ss_pred             ceEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence            999999999999988889999999642    23467999999999865

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.82  E-value=1.8e-19  Score=155.21  Aligned_cols=116  Identities=27%  Similarity=0.539  Sum_probs=102.8

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~  343 (573)
                      |+|+|++|++|++.+..+.+||||++++.+.+...++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999988889999999999975445678999999999999999999999866667899999999988 8999


Q ss_pred             eEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       344 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      ||++.+++.++..+.....|++|.        .+..|++++++.+
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~--------~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLN--------PQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECC--------CCCCceEEEEEEe
Confidence            999999999999998899999984        3457888888765

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=1.5e-19  Score=153.97  Aligned_cols=108  Identities=22%  Similarity=0.369  Sum_probs=92.9

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEec----CCCCeEEeeeeCCCCCceeccEEEEEEec---CCCcEEEEEEEeC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----LPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD  335 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~~l~i~v~d~  335 (573)
                      .|+|+|++|++|+..+ .|.+||||++++..    ...++++|+++++++||+|||+|.|.+..   +....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999887 49999999999842    22346789999999999999999999974   3345799999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEeeeccc
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD  371 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  371 (573)
                      +..++|++||++.+++.++..++....|++|.+...
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~  115 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH  115 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence            987889999999999999998888999999976543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.82  E-value=1.6e-19  Score=156.32  Aligned_cols=115  Identities=37%  Similarity=0.647  Sum_probs=104.1

Q ss_pred             eEEEEEEEEeecCCCCCC------CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214          448 GVLSVTVILAENLPASDL------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~  521 (573)
                      |.|.|+|++|+||+..+.      .|.+||||++++++  ..++|++++++.||.|||.|.|.+.+...+.|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~   78 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED   78 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence            579999999999998764      36899999999976  7889999999999999999999998766789999999998


Q ss_pred             CCCCceeEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEE
Q 008214          522 TFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW  564 (573)
Q Consensus       522 ~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~  564 (573)
                      ..++++||++.++++++..++..++||+|.+..+|+|+++++|
T Consensus        79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             CCCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence            8755799999999999988777899999998889999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=2.5e-19  Score=157.22  Aligned_cols=119  Identities=25%  Similarity=0.464  Sum_probs=103.1

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      ...|.|+|+|++|++|++.+..|.+||||+++++   .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~   88 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF   88 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence            5789999999999999999988999999999986   6679999999999999999999999877778999999999998


Q ss_pred             CCCCceEEEEEEccccCC-----CceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          339 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      ++|++||++.+++.++..     ......|..+        .....|+|++++.+
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence            899999999999999865     2222234433        46788999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.82  E-value=1.1e-19  Score=156.55  Aligned_cols=115  Identities=30%  Similarity=0.533  Sum_probs=101.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCc
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD  526 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d  526 (573)
                      |.|+|+|.+|++|+..+..+.+||||++.+++  .+++|+++. ++.||.|||.|.|.+..+..+.|.|+|||++..+++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~   78 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPD   78 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCc
Confidence            57999999999999999889999999999986  667888875 478999999999999876678999999999887767


Q ss_pred             eeEEEEEEcceeeecCeEeEEEEcCCC--CCeEEEEEEEE
Q 008214          527 YMGRCILTLTRVILEGEYTDCFELDGT--KSGKLKLHLKW  564 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~--~~G~i~l~l~~  564 (573)
                      +||++.++++++..+....+||+|...  ..|+|+++++|
T Consensus        79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          79 LIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             ceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            999999999998877677999999754  57999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2.3e-19  Score=154.12  Aligned_cols=116  Identities=30%  Similarity=0.446  Sum_probs=100.7

Q ss_pred             EEEEEEEEeee---ccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214          263 TLEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (573)
Q Consensus       263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~  339 (573)
                      .|.|+|++|++   |..+|..|.+||||+++++   .++.+|++++++.||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence            37899999999   8888989999999999997   67889999999999999999999998654 48999999998863


Q ss_pred             ------CCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEE
Q 008214          340 ------SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL  384 (573)
Q Consensus       340 ------~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l  384 (573)
                            +|++||++.+++..+..+.....|++|....  .+..+..|+|+.
T Consensus        77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~  125 (126)
T cd08379          77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC  125 (126)
T ss_pred             ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence                  8999999999999999998899999997543  124567777764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.82  E-value=9e-20  Score=152.87  Aligned_cols=108  Identities=16%  Similarity=0.216  Sum_probs=92.3

Q ss_pred             cccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC-CCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       256 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      .+....|.|+|+|++|++|+ .  .|.+||||++++.+. +..+++|+++++|+||+|||+|.|.+...  ....|.|.|
T Consensus         8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V   84 (118)
T cd08677           8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL   84 (118)
T ss_pred             EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence            45577899999999999998 2  467999999999753 33578999999999999999999998643  567899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      ||+|+++++++||++.+++.++..+...++|..|
T Consensus        85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999999988666667788653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=3.6e-19  Score=152.73  Aligned_cols=115  Identities=29%  Similarity=0.445  Sum_probs=103.8

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      +++|+|++|++|+..+..+.+||||+++++   ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~   77 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE   77 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            478999999999999988999999999996   56789999999999999999999998776789999999999988999


Q ss_pred             ceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       343 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      +||++.++|+++..+...+.|++|.+         ..|+|++.+.|.
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~  115 (116)
T cd08376          78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT  115 (116)
T ss_pred             eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence            99999999999998888999999842         259999998873

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.81  E-value=2.2e-19  Score=156.30  Aligned_cols=112  Identities=22%  Similarity=0.455  Sum_probs=97.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEecc-----CCCCEEEEEEEeCCCCC
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-----GLHDMLIAEVWDHDTFG  524 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~L~i~V~d~~~~~  524 (573)
                      ++|+|++|+||+..+..|.+||||++.+++  .++||++++++.||+|||.|.|.+..     +....|.++|||++..+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~--~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~   78 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK--EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG   78 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC--eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence            479999999999998889999999999975  67899999999999999999999976     35678999999999876


Q ss_pred             C-ceeEEEEEEcceee--ecCeEeEEEEcCCC------CCeEEEEEEE
Q 008214          525 K-DYMGRCILTLTRVI--LEGEYTDCFELDGT------KSGKLKLHLK  563 (573)
Q Consensus       525 ~-d~lG~~~i~l~~l~--~~~~~~~~~~L~~~------~~G~i~l~l~  563 (573)
                      . ++||++.|+++++.  .+....+||+|.+.      ..|+|+++++
T Consensus        79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            4 79999999999987  44556899999742      3699999875

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=2.7e-19  Score=155.93  Aligned_cols=121  Identities=29%  Similarity=0.412  Sum_probs=104.1

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC---CcEEEEEEEeCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ  339 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~---~~~l~i~v~d~~~~~  339 (573)
                      .|+|+|++|++|+..+..|.+||||+++++   ++.++|++++++.||+|||.|.|.+.++.   ...|.|+|||++...
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~   77 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG   77 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence            489999999999999988999999999997   56789999999999999999999987542   358999999999876


Q ss_pred             -CCCceEEEEEEccccC-CCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          340 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       340 -~d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                       +|++||++.++++++. .+.....|++|.+..   ...+.+|+|++++.+.
T Consensus        78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~  126 (127)
T cd04022          78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEEc
Confidence             8999999999999997 567788999997542   1345789999998863

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=3.5e-19  Score=158.76  Aligned_cols=125  Identities=22%  Similarity=0.405  Sum_probs=106.6

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCC-CCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d  341 (573)
                      .|+|+|++|++|+.++..|.+||||+++++   ++..+|+++.+ +.||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d   77 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD   77 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence            378999999999999999999999999997   57889998866 69999999999999876667999999999988889


Q ss_pred             CceEEEEEEccccCCC----ceeEEEEEeeecccc---cCCCcceeEEEEEEEEee
Q 008214          342 ELIGCAQVRLCELEPG----KVKDVWLKLVKDLDV---QRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~---~~~~~~~G~i~l~l~~~p  390 (573)
                      ++||++.++|.++..+    ...+.|++|.+....   .+..+.+|+|++.+.|.+
T Consensus        78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~  133 (150)
T cd04019          78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG  133 (150)
T ss_pred             CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence            9999999999998643    456899999865321   134577899999999963

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.81  E-value=4.4e-19  Score=152.78  Aligned_cols=115  Identities=26%  Similarity=0.526  Sum_probs=103.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCcee
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM  528 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~l  528 (573)
                      |+|+|++|++|+..+..+.+||||++++++ ...++||++++++.||+|||+|.|.+.....+.|.|+|||++..++++|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i   81 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL   81 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence            789999999999988888999999999963 2467899999999999999999999986656789999999998855799


Q ss_pred             EEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEE
Q 008214          529 GRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW  564 (573)
Q Consensus       529 G~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~  564 (573)
                      |++.++++++..+.....||+|.+.+.|++++++..
T Consensus        82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            999999999988888899999999889999998865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=4.1e-19  Score=152.62  Aligned_cols=109  Identities=28%  Similarity=0.435  Sum_probs=95.9

Q ss_pred             EEEEEEEEeec---CCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC--
Q 008214          449 VLSVTVILAEN---LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF--  523 (573)
Q Consensus       449 ~L~V~v~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~--  523 (573)
                      .|+|+|++|++   |+..+..|.+||||++++++  ++.||++++++.||+|||+|.|.+.++ ...|.|+|||++..  
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~--~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~   77 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP--KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHW   77 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECC--EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccc
Confidence            48999999999   88889999999999999976  688999999999999999999999865 45899999999886  


Q ss_pred             -----CCceeEEEEEEcceeeecCeEeEEEEcCC------CCCeEEEE
Q 008214          524 -----GKDYMGRCILTLTRVILEGEYTDCFELDG------TKSGKLKL  560 (573)
Q Consensus       524 -----~~d~lG~~~i~l~~l~~~~~~~~~~~L~~------~~~G~i~l  560 (573)
                           ++++||++.++++++..+.....||+|..      .+.|+|++
T Consensus        78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence                 45799999999999988888899999973      24677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.81  E-value=3.7e-19  Score=155.59  Aligned_cols=123  Identities=33%  Similarity=0.539  Sum_probs=106.4

Q ss_pred             eEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~  339 (573)
                      |.|+|+|++|++|+..+.  .+.+||||+++++   .++++|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~   77 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA   77 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence            789999999999999888  7899999999986   56789999999999999999999998766789999999999888


Q ss_pred             CCCceEEEEEEccccC---CCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          340 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       340 ~d~~lG~~~i~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      ++++||++.+++.++.   .......|+.|.+... ......+|+|++++.|
T Consensus        78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~  128 (128)
T cd04024          78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence            9999999999999986   3344679999975432 2345689999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=7.2e-19  Score=150.87  Aligned_cols=114  Identities=33%  Similarity=0.584  Sum_probs=103.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  527 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  527 (573)
                      +++|+|++|++|+..+..+.+||||++++++  .+++|+++++|.||.|||+|.|.+.++....|.|+|||++..++ ++
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~   78 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF   78 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence            4789999999999998889999999999975  67899999999999999999999987667899999999998765 69


Q ss_pred             eEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEEE
Q 008214          528 MGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM  565 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~~  565 (573)
                      ||++.++|+++..+.....||+|.+. .|+|++.+.|.
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          79 IGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            99999999999888888999999876 59999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.81  E-value=7.7e-19  Score=154.18  Aligned_cols=118  Identities=31%  Similarity=0.562  Sum_probs=105.8

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~  525 (573)
                      ..|.|+|+|++|++|+..+..|.+||||+++++.  .+++|++++++.||.|||+|.|.+.++..+.|.|+|||++..++
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            4599999999999999999899999999999975  68899999999999999999999987777899999999998765


Q ss_pred             -ceeEEEEEEcceeee-----cCeEeEEEEcCCCCCeEEEEEEEEE
Q 008214          526 -DYMGRCILTLTRVIL-----EGEYTDCFELDGTKSGKLKLHLKWM  565 (573)
Q Consensus       526 -d~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~G~i~l~l~~~  565 (573)
                       ++||++.+++.++..     .....+|.++.+...|+|++++.+.
T Consensus        91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~  136 (136)
T cd08375          91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDLQ  136 (136)
T ss_pred             CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEeC
Confidence             699999999999986     3445788999888899999999873

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.80  E-value=8.4e-19  Score=152.06  Aligned_cols=121  Identities=24%  Similarity=0.486  Sum_probs=105.7

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      .|+|+|++|++|...+..+.+||||+++++   +..++|++++++.||+|||+|.|.+.+.....|.|+|||++..++++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~   77 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND   77 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            389999999999999988899999999986   56789999999999999999999998766678999999999988999


Q ss_pred             ceEEEEEEccccCCCceeEEEEEeeecccc-cCCCcceeEEEEEE
Q 008214          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVHLEL  386 (573)
Q Consensus       343 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~G~i~l~l  386 (573)
                      +||.+.+++.++..+.....|+.|.+.... ...++..|.|++.+
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            999999999999877777899999764432 23567899999875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.6e-18  Score=149.84  Aligned_cols=116  Identities=28%  Similarity=0.457  Sum_probs=103.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  527 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  527 (573)
                      .|+|+|++|++|+..+..|.+||||++.+++ ...++|++++++.||.|||.|.|.+.++ ...|.|+|||++..++ ++
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~   78 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF   78 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence            3789999999999999889999999999974 3578999999999999999999999764 5789999999998854 79


Q ss_pred             eEEEEEEcceeeecCeEeEEEEcCCC----CCeEEEEEEEEEe
Q 008214          528 MGRCILTLTRVILEGEYTDCFELDGT----KSGKLKLHLKWMP  566 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~~~~~~~L~~~----~~G~i~l~l~~~p  566 (573)
                      ||++.++++++..+...+.|++|.+.    ..|+|++.+++.|
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            99999999999988888999999644    3699999999986

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=5.1e-19  Score=152.51  Aligned_cols=105  Identities=27%  Similarity=0.456  Sum_probs=93.8

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEE-e--cCCCcEEEEEEEeC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD  335 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v-~--~~~~~~l~i~v~d~  335 (573)
                      .|.|.|+|++|++|+..+ .+.+||||++++.+..  ..+++|++++++.||+|||+|.|.+ .  +.....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            689999999999999999 8999999999998643  3468999999999999999999987 2  33567899999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      +..+++++||++.++|.++..++....|++|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999999888778899986

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.80  E-value=1.4e-18  Score=149.55  Aligned_cols=119  Identities=29%  Similarity=0.450  Sum_probs=101.6

Q ss_pred             EEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          264 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      |.|+|++|+||+..+ ..|.+||||+++++  +...++|++++++.||+|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~   78 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS   78 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence            679999999999864 45789999999996  23468999999999999999999999753 468999999999999999


Q ss_pred             ceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       343 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      +||.+.++++++..+...+.|++|.+..   ...+.+|+|++++.+
T Consensus        79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~---~~~~~~G~i~l~~~~  121 (121)
T cd08401          79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD---ADSEVQGKVHLELRL  121 (121)
T ss_pred             eEEEEEEEHHHccCCCCcEeeEEEEccC---CCCcccEEEEEEEEC
Confidence            9999999999998888889999997542   234568999998763

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.79  E-value=1.2e-18  Score=150.26  Aligned_cols=103  Identities=31%  Similarity=0.509  Sum_probs=90.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEe-c--cCCCCEEEEEEEeCC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDHD  521 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v-~--~~~~~~L~i~V~d~~  521 (573)
                      +.|.|.|++|+||+..+ .+.+||||++++...   ..++||++++++.||.|||+|.|.+ .  +.....|.|+|||++
T Consensus        13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            78999999999999999 889999999999632   3578999999999999999999987 2  345679999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      ..++ ++||++.++|+++...+....||+|.
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  122 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLSQETEKWYPLG  122 (122)
T ss_pred             CCcCCcEEEEEEEeccccccCCCccceEECc
Confidence            8865 69999999999998777778999973

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.79  E-value=2e-18  Score=149.95  Aligned_cols=122  Identities=21%  Similarity=0.376  Sum_probs=102.5

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~  340 (573)
                      ...|+|+|++|+||+.+   +.+||||+++++  +.+..+|++ .++.||.|||+|.|.+.....+.+.|.|||++..++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~   76 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK   76 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence            35799999999999864   478999999996  234568887 468999999999998765554689999999999999


Q ss_pred             CCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       341 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      |++||.+.++|.++..+...+.|+.|.+..  ....+..|+|+++++|.+
T Consensus        77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence            999999999999999888889999997642  134567899999999974

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1e-18  Score=155.71  Aligned_cols=119  Identities=25%  Similarity=0.305  Sum_probs=102.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCC-CCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC-Cc
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KD  526 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~-~d  526 (573)
                      .|.|+|.+|++|+..+..|.+||||++.+++  ++++|+++.+ |.||+|||.|+|.+.++..+.|.|+|||++..+ ++
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd   78 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE   78 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence            3889999999999999999999999999986  7889998866 699999999999998776779999999998764 47


Q ss_pred             eeEEEEEEcceeeec----CeEeEEEEcCCCC-----------CeEEEEEEEEEecCC
Q 008214          527 YMGRCILTLTRVILE----GEYTDCFELDGTK-----------SGKLKLHLKWMPQPI  569 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~----~~~~~~~~L~~~~-----------~G~i~l~l~~~p~~~  569 (573)
                      +||++.++|+++..+    ....+||+|.+..           +|+|+|.++|.+.+.
T Consensus        79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~  136 (150)
T cd04019          79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH  136 (150)
T ss_pred             eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence            999999999998653    2358999997542           499999999986553

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=9.6e-19  Score=151.37  Aligned_cols=115  Identities=35%  Similarity=0.633  Sum_probs=101.9

Q ss_pred             eEEEEEEEEeeeccCCCC------CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeC
Q 008214          262 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~  335 (573)
                      |.|+|+|++|++|+..+.      .|.+||||+++++   ++.++|++++++.||+|||+|.|.+.+...+.|.|+|||+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence            789999999999998774      3689999999997   5789999999999999999999999876678999999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      +.. +|++||.+.+++.++..+...+.|++|.        ....|+|+++++|
T Consensus        78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~--------~~~~G~~~~~~~~  121 (121)
T cd08391          78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE--------DVKSGRLHLKLEW  121 (121)
T ss_pred             CCC-CCCcEEEEEEEHHHhcccCccceEEECc--------CCCCceEEEEEeC
Confidence            987 8999999999999998877788999984        2367999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.79  E-value=1.1e-18  Score=152.70  Aligned_cols=115  Identities=36%  Similarity=0.666  Sum_probs=101.7

Q ss_pred             eEEEEEEEEeecCCCCCC--CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC
Q 008214          448 GVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~  525 (573)
                      |.|+|+|++|++|+..+.  .+.+||||++.++.  .+++|++++++.||.|||+|.|.+.++....|.|+|||++..+.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~   78 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAG   78 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCC
Confidence            679999999999999888  88999999999975  67899999999999999999999987667899999999998754


Q ss_pred             -ceeEEEEEEcceeee---cCeEeEEEEcCCC-------CCeEEEEEEEE
Q 008214          526 -DYMGRCILTLTRVIL---EGEYTDCFELDGT-------KSGKLKLHLKW  564 (573)
Q Consensus       526 -d~lG~~~i~l~~l~~---~~~~~~~~~L~~~-------~~G~i~l~l~~  564 (573)
                       ++||++.+++.++..   .+...+||+|.+.       .+|+|+++++|
T Consensus        79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence             799999999999873   2345899999765       48999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=1.9e-18  Score=152.07  Aligned_cols=105  Identities=27%  Similarity=0.369  Sum_probs=90.3

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEE-eCCC
Q 008214          448 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT  522 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~-d~~~  522 (573)
                      +.|.|+|++|+||+..+ ..|.+||||++++...   ..++||+++++|.||+|||+|.|.+. ..+..|.|+|| |++.
T Consensus        29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~  107 (146)
T cd04028          29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence            68999999999999864 5678999999999532   24789999999999999999999998 66789999999 5666


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      .++ ++||.+.|+|+++..+.....||+|.+.
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            544 6999999999998777777899999764

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.79  E-value=2.3e-18  Score=149.77  Aligned_cols=121  Identities=30%  Similarity=0.496  Sum_probs=104.0

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~  343 (573)
                      |.|+|++|++|+.  ..|.+||||++++.. ..+.++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~   76 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF   76 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence            5799999999987  678999999999862 2456899999999999999999999863 46789999999999889999


Q ss_pred             eEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       344 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      ||++.+++.++..+.....|++|.+...  ......|+|++++.|.+
T Consensus        77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFME  121 (126)
T ss_pred             EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEec
Confidence            9999999999988877889999975421  24568999999999975

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=1.2e-18  Score=153.30  Aligned_cols=109  Identities=26%  Similarity=0.436  Sum_probs=95.9

Q ss_pred             ceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEE-eCC
Q 008214          261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DDE  336 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~-d~~  336 (573)
                      .|.|.|+|++|+||..++ ..|.+||||++++.+.+.  .++||+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence            689999999999999864 568899999999986443  3789999999999999999999998 66779999999 678


Q ss_pred             CCCCCCceEEEEEEccccCCCceeEEEEEeeecc
Q 008214          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL  370 (573)
Q Consensus       337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  370 (573)
                      .+.++++||++.++|+++..+.....|++|.+..
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             CCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            8888999999999999997777788999997643

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.79  E-value=1.1e-18  Score=146.23  Aligned_cols=102  Identities=19%  Similarity=0.295  Sum_probs=86.3

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC--cceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~  521 (573)
                      ..+.|+|+|++|++|+   ..|.+||||++++..  ...+++|+++++|.||+|||+|.|.+..  ..+..|.|+|||.|
T Consensus        12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D   88 (118)
T cd08677          12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD   88 (118)
T ss_pred             cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence            3589999999999998   246699999999953  2357799999999999999999999873  35678999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEc
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFEL  550 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L  550 (573)
                      .+++ ++||++.++++++.......+|..|
T Consensus        89 rfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          89 RFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCceEEEEEEccccccCCccccchhcC
Confidence            9976 7999999999998666666778654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.79  E-value=9.9e-19  Score=151.61  Aligned_cols=110  Identities=23%  Similarity=0.428  Sum_probs=96.2

Q ss_pred             cCcceEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEE
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI  332 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v  332 (573)
                      .+..+.|.|+|++|+||+.++.. |.+||||++++.+..  ..+++|++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V   90 (125)
T cd08393          11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV   90 (125)
T ss_pred             ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence            35678999999999999999875 899999999998644  345799999999999999999999864  3456899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      ||++..+++++||++.++|.++..+.....|++|+
T Consensus        91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            99999999999999999999998777788999873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.78  E-value=7.5e-19  Score=152.60  Aligned_cols=97  Identities=34%  Similarity=0.608  Sum_probs=89.6

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      ...|.|+|+|++|.+|..+|..+++||||.+.++   +++.+|+++++++||+|||+|.|.+.++. ..|.+.|||+|.+
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~f   78 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTF   78 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCCC-ceEEEEEEeCCCC
Confidence            3579999999999999999988999999999998   88899999999999999999999999874 5899999999999


Q ss_pred             CCCCceEEEEEEccccCCCce
Q 008214          339 QSSELIGCAQVRLCELEPGKV  359 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~~~~  359 (573)
                      ++||++|.|+|+|..+.....
T Consensus        79 s~dD~mG~A~I~l~p~~~~~~   99 (168)
T KOG1030|consen   79 SSDDFMGEATIPLKPLLEAQK   99 (168)
T ss_pred             CcccccceeeeccHHHHHHhh
Confidence            999999999999999865543

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.78  E-value=3.7e-18  Score=148.53  Aligned_cols=116  Identities=24%  Similarity=0.457  Sum_probs=101.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-cee
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM  528 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l  528 (573)
                      |.|+|++|+||+.  ..|.+||||+++++....+++|+++++|.||+|||.|.|.+.. ....|.|+|||++..++ ++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence            5799999999998  6789999999999754467899999999999999999999863 46789999999998765 699


Q ss_pred             EEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEecC
Q 008214          529 GRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQP  568 (573)
Q Consensus       529 G~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~~  568 (573)
                      |++.+++.++.......+||+|.+.      ..|+|+++++|.+..
T Consensus        78 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          78 GLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             EEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            9999999999988878899999744      489999999998754

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.78  E-value=2.6e-18  Score=148.96  Aligned_cols=105  Identities=28%  Similarity=0.455  Sum_probs=90.2

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|+||+..+.. |.+||||++++...   ..++||++++++.||+|||+|.|.+..  .....|.|+|||.
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~   93 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR   93 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence            36899999999999998875 88999999999532   246799999999999999999999863  3456899999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      +..++ ++||.+.|+|.++........||+|.
T Consensus        94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            98766 69999999999997776678999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=2.3e-18  Score=150.15  Aligned_cols=115  Identities=25%  Similarity=0.416  Sum_probs=99.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCC---CCEEEEEEEeCCCCC-
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL---HDMLIAEVWDHDTFG-  524 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---~~~L~i~V~d~~~~~-  524 (573)
                      .|+|+|++|++|+..+..|.+||||++++++  .++||++++++.||.|||.|.|.+.++.   ...|.|+|||++..+ 
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~   78 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR   78 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence            3899999999999998889999999999976  6789999999999999999999997542   358999999998774 


Q ss_pred             -CceeEEEEEEcceeee-cCeEeEEEEcCCC-----CCeEEEEEEEEE
Q 008214          525 -KDYMGRCILTLTRVIL-EGEYTDCFELDGT-----KSGKLKLHLKWM  565 (573)
Q Consensus       525 -~d~lG~~~i~l~~l~~-~~~~~~~~~L~~~-----~~G~i~l~l~~~  565 (573)
                       +++||++.++++++.. +....+||+|+..     .+|+|+|++.++
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence             5799999999999973 4556899999753     489999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.78  E-value=1.8e-18  Score=150.19  Aligned_cols=110  Identities=35%  Similarity=0.559  Sum_probs=98.6

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeC
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~  335 (573)
                      .+..|.|.|+|++|++|+.++..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~   91 (124)
T cd08387          12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF   91 (124)
T ss_pred             CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence            356799999999999999999889999999999976556678999999999999999999998643  356899999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      +.++++++||++.++++++..+...+.|++|+
T Consensus        92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            99889999999999999998777889999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=2.6e-18  Score=147.85  Aligned_cols=113  Identities=23%  Similarity=0.455  Sum_probs=98.0

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~  343 (573)
                      |.|+|++|++|+..    .+||||+++++   .+..+|++++++.||+|||+|.|.+.+...+.|.++|||++.. ++++
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~   73 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF   73 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence            78999999999876    78999999997   4678999999999999999999998876678999999999976 7999


Q ss_pred             eEEEEEEccccCCC-----ceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          344 IGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       344 lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      ||++.++++++...     .....|++|....    ..+.+|+|++++.|
T Consensus        74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~  119 (121)
T cd08378          74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF  119 (121)
T ss_pred             eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence            99999999998543     2356999997542    35788999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=2.5e-18  Score=148.91  Aligned_cols=110  Identities=18%  Similarity=0.336  Sum_probs=96.3

Q ss_pred             ccCcceEEEEEEEEeeeccCCCC-CCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR  331 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~  331 (573)
                      +....|.|.|+|++|+||+..+. .|.+||||++++.+.+  ..++||++++++.||+|||+|.|.+...  ....|.|+
T Consensus        10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~   89 (125)
T cd04029          10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS   89 (125)
T ss_pred             EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            34578999999999999998775 4789999999998644  3467999999999999999999998643  45689999


Q ss_pred             EEeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      |||++..+++++||++.++|.++......+.|++|
T Consensus        90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            99999999999999999999999888889999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=2.9e-18  Score=147.64  Aligned_cols=111  Identities=29%  Similarity=0.474  Sum_probs=96.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCcee
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM  528 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~l  528 (573)
                      .|+|+|++|+||+..    .+||||++++++  .+.||++++++.||+|||+|.|.+.++....|.++|||++..++++|
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~l   74 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFL   74 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCcee
Confidence            389999999999887    689999999975  67899999999999999999999987677899999999998766899


Q ss_pred             EEEEEEcceeeecC-----eEeEEEEcCCCC----CeEEEEEEEEE
Q 008214          529 GRCILTLTRVILEG-----EYTDCFELDGTK----SGKLKLHLKWM  565 (573)
Q Consensus       529 G~~~i~l~~l~~~~-----~~~~~~~L~~~~----~G~i~l~l~~~  565 (573)
                      |++.++++++....     ...+||+|.+..    .|+|++++.|-
T Consensus        75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~  120 (121)
T cd08378          75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG  120 (121)
T ss_pred             eeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence            99999999987542     246999997654    69999999873

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.77  E-value=5e-18  Score=147.05  Aligned_cols=105  Identities=24%  Similarity=0.491  Sum_probs=90.4

Q ss_pred             eeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDL-MGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|+||+..+. .|.+||||++++...   ..++||++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~   93 (125)
T cd04029          14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY   93 (125)
T ss_pred             CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            4789999999999998765 478999999999531   3467999999999999999999998642  456899999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      +..++ ++||++.++|.++......+.||+|.
T Consensus        94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            98766 69999999999998888889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.77  E-value=6.6e-18  Score=152.16  Aligned_cols=122  Identities=27%  Similarity=0.510  Sum_probs=103.4

Q ss_pred             ceEEEEEEEEeeeccCCCC------------------------------CCCCCcEEEEEEecCCCCeEEeeeeCCCCCc
Q 008214          261 VGTLEVKLVQAKGLTNKDL------------------------------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNP  310 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~------------------------------~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP  310 (573)
                      .|.|.|+|++|++|+++|.                              .|.+||||++++++  .+..+|++++++.||
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~--~~~~rT~v~~~~~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG--ARVARTRVIENSENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC--eEeeEEEEeCCCCCC
Confidence            5999999999999999872                              46789999999972  345799999999999


Q ss_pred             eeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       311 ~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      +|||+|.|.+.+. .+.|.|.|||++..+ +++||.+.++++++..+...+.|++|....  .+..+..|.|++++.|
T Consensus        84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f  157 (158)
T cd04015          84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEE
Confidence            9999999998754 468999999999874 689999999999998888889999997542  2244567899999988

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.77  E-value=4.3e-18  Score=147.95  Aligned_cols=122  Identities=28%  Similarity=0.505  Sum_probs=101.9

Q ss_pred             ceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214          261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~  339 (573)
                      .|.|+|+|++|++|+..+ ..+.+||||++++... .+.++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~   78 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR   78 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence            489999999999999755 3467899999999732 36789999999999999999999987 45679999999999988


Q ss_pred             CCCceEEEEEEccccCCCceeE-EEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          340 SSELIGCAQVRLCELEPGKVKD-VWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       340 ~d~~lG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      +|++||.+.+++.++..+.... .|..+.      ..++..|+|+++++|.|
T Consensus        79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL------RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCceeEEEEEEHHHhccCccccCcchhhh------cCCccceEEEEEEEeCC
Confidence            9999999999999998766554 333332      35667899999999976

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=4e-18  Score=143.21  Aligned_cols=102  Identities=32%  Similarity=0.481  Sum_probs=92.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCcee
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM  528 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~l  528 (573)
                      .|.|+|++|++|+..+..+.+||||++++++  ++++|+++++|.||.|||.|.|.+.++..+.|.|+|||++.  +++|
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~i   76 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSL   76 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCcc
Confidence            3889999999999988889999999999986  78899999999999999999999998777899999999887  6799


Q ss_pred             EEEEEEcceeeecC--eEeEEEEcCCCC
Q 008214          529 GRCILTLTRVILEG--EYTDCFELDGTK  554 (573)
Q Consensus       529 G~~~i~l~~l~~~~--~~~~~~~L~~~~  554 (573)
                      |++.++|.++....  ..++||+|.+.+
T Consensus        77 G~~~i~l~~l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          77 GSLTLPLSELLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             EEEEEEHHHhhccccceeeeeEecCCCC
Confidence            99999999998664  468999998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.77  E-value=5e-18  Score=147.43  Aligned_cols=105  Identities=27%  Similarity=0.459  Sum_probs=92.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~  523 (573)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ....++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~   94 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence            478999999999999999889999999999952 24578999999999999999999998743  356899999999887


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      ++ ++||++.++++++..++..+.||+|.
T Consensus        95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          95 SRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCceeEEEEEecccccCCCCcceEEECc
Confidence            65 69999999999998777889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.77  E-value=7.8e-18  Score=151.71  Aligned_cols=119  Identities=24%  Similarity=0.461  Sum_probs=102.6

Q ss_pred             ceeeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEcCcceeEeecccCCCCC
Q 008214          445 IIRGVLSVTVILAENLPASD------------------------------LMGKADPYVVLTMKKSETRNKTRVVNDCLN  494 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~~~~~~kT~~~~~t~n  494 (573)
                      ..-|.|.|+|++|++|+++|                              ..|.+||||++.+++ .+..||++++++.|
T Consensus         4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~~n   82 (158)
T cd04015           4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENSEN   82 (158)
T ss_pred             EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCCCC
Confidence            44699999999999999876                              346689999999975 34579999999999


Q ss_pred             CeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEE
Q 008214          495 PIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWM  565 (573)
Q Consensus       495 P~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~  565 (573)
                      |+|||+|.|.+.+. .+.|.|+|||++..++++||++.++++++..+...++||+|.+.      +.|+|+++++|.
T Consensus        83 P~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          83 PVWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             CccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            99999999998754 46899999999988778999999999999887778999999542      368999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.77  E-value=9.6e-18  Score=147.60  Aligned_cols=122  Identities=27%  Similarity=0.470  Sum_probs=102.6

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC----CCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      .|+|+|++|++|+..+..|.+||||++++.+..    ...++|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            378999999999999988999999999997421    1257899999999999999999998743 46899999999998


Q ss_pred             CCCCceEEEEEEccccCCCc------eeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          339 QSSELIGCAQVRLCELEPGK------VKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      +++++||++.+++.++..+.      ....|++|.+..   ..++..|+|++++.|
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~---~~~~~~G~l~~~~~~  132 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS---SKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecC---CCCcceeEEEEEEee
Confidence            89999999999999986543      246899997532   245789999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.77  E-value=8.2e-18  Score=145.91  Aligned_cols=105  Identities=26%  Similarity=0.462  Sum_probs=88.7

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|+||+..+.. |.+||||++++...   ..++||++++++.||+|||+|.|.+...  ....|.+.|||.
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~   93 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS   93 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence            47899999999999998865 89999999999531   3477999999999999999999998642  356999999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeec---CeEeEEEEcC
Q 008214          521 DTFGK-DYMGRCILTLTRVILE---GEYTDCFELD  551 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~---~~~~~~~~L~  551 (573)
                      +..++ ++||.+.|+|+++...   .....||+|.
T Consensus        94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            98765 7999999999998543   3568999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.76  E-value=5.8e-18  Score=147.05  Aligned_cols=110  Identities=32%  Similarity=0.518  Sum_probs=98.2

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeC
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~  335 (573)
                      ....|.|.|+|++|++|+.++..+.+||||++++.+...+.++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~   91 (124)
T cd08385          12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF   91 (124)
T ss_pred             eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence            356789999999999999999889999999999986656678999999999999999999998642  356899999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      +.++++++||++.+++.++..+...+.|++|.
T Consensus        92 d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          92 DRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            99989999999999999998888889999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.76  E-value=1.4e-17  Score=143.58  Aligned_cols=118  Identities=33%  Similarity=0.584  Sum_probs=102.1

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d  341 (573)
                      |.|+|+|++|++|+..+..+.+||||++++.   +..++|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~   76 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP   76 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999986   4568999999999999999999998753 46899999999988899


Q ss_pred             CceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      ++||++.+++.++..+.  ..|+.|....   ...+..|+|.+++.+
T Consensus        77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~~---~~~~~~G~i~l~~~~  118 (119)
T cd08377          77 EFLGKVAIPLLSIKNGE--RKWYALKDKK---LRTRAKGSILLEMDV  118 (119)
T ss_pred             ceeeEEEEEHHHCCCCC--ceEEECcccC---CCCceeeEEEEEEEe
Confidence            99999999999987654  5799986432   245679999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.76  E-value=8.7e-18  Score=146.17  Aligned_cols=111  Identities=21%  Similarity=0.269  Sum_probs=94.4

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEE-Eec--CCCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~-v~~--~~~~~l~i~v  332 (573)
                      +....+.|+|+|++|++|+..+.. +.+||||++++.+...+++||++++++.||+|||+|.|. +..  .....|.++|
T Consensus        11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V   90 (128)
T cd08388          11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV   90 (128)
T ss_pred             EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence            345678999999999999998876 889999999998666667899999999999999999993 432  2345799999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCC--ceeEEEEEee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV  367 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~  367 (573)
                      ||++.+++|++||++.++|.++...  .....|++++
T Consensus        91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            9999999999999999999998544  5678899875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.76  E-value=5.8e-18  Score=149.94  Aligned_cols=106  Identities=24%  Similarity=0.342  Sum_probs=90.1

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEe---------------cCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST  325 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~---------------~~~~  325 (573)
                      .|.|+|++|++|+.  ..|.+||||++++.+..  .+.++|++++++.||+|||+|.|.+.               +...
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            47899999999997  46899999999997422  25678999999999999999999985               1233


Q ss_pred             cEEEEEEEeCCCCCCCCceEEEEEEccccCCC-ceeEEEEEeeecc
Q 008214          326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL  370 (573)
Q Consensus       326 ~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~  370 (573)
                      ..|.|.|||++..++|++||++.+++..+..+ .....|++|.+..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            57999999999888999999999999999876 5678999997654

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.76  E-value=2.2e-17  Score=143.57  Aligned_cols=123  Identities=17%  Similarity=0.282  Sum_probs=103.7

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~  339 (573)
                      |.++|+|+|++|++|...+..|.+||||+++++   ++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++.. 
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence            468999999999999999988999999999987   5678999999999999999999988764 56899999999876 


Q ss_pred             CCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          340 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       340 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      .|++||++.+++.++..  ....|++|.+... ...++..|+|.+++.+.+
T Consensus        76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence            58999999999987643  3456777764332 356789999999998754

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.75  E-value=5.3e-18  Score=145.73  Aligned_cols=110  Identities=20%  Similarity=0.313  Sum_probs=95.4

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR  331 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~  331 (573)
                      +.+..|.|.|+|++|+||+..+..+.+||||++++.+.++   ..++|++++++.||+|||+|.|.+...  ....|.+.
T Consensus         9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~   88 (124)
T cd08680           9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD   88 (124)
T ss_pred             ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence            4567899999999999999988888999999999987663   478999999999999999999998643  56799999


Q ss_pred             EEeCCCCCCCCceEEEEEEccccCCC-ceeEEEEEe
Q 008214          332 IYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL  366 (573)
Q Consensus       332 v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L  366 (573)
                      |||++..+++++||.+.++|+++... .....|++|
T Consensus        89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            99999999999999999999999544 446778764

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.75  E-value=2.5e-17  Score=143.02  Aligned_cols=115  Identities=18%  Similarity=0.355  Sum_probs=97.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  526 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d  526 (573)
                      ..|+|+|++|+||+..   +.+||||++.+++ .+..||++ +++.||.|||+|.|.+..+....+.|.|||++..++ +
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            5699999999999874   4689999999975 34568887 468999999999998765544689999999988765 6


Q ss_pred             eeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEec
Q 008214          527 YMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQ  567 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~  567 (573)
                      +||.+.++|+++..++..+.||+|.+.      ..|+|+++++|.+.
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            999999999999887778999999653      35999999999875

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.75  E-value=1.8e-17  Score=143.87  Aligned_cols=105  Identities=33%  Similarity=0.525  Sum_probs=91.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~  523 (573)
                      .+.|.|+|++|+||+..+..+.+||||++++.. ...+++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~   94 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence            478999999999999998889999999999853 23578999999999999999999998642  356899999999887


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      ++ ++||++.++++++..+...++|+.|+
T Consensus        95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            65 69999999999998777789999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.75  E-value=1.4e-17  Score=143.29  Aligned_cols=113  Identities=21%  Similarity=0.340  Sum_probs=97.5

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214          450 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  527 (573)
Q Consensus       450 L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  527 (573)
                      |.|+|.+|+||+..+ ..|.+||||.+.+++ ...++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..+. ++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~   79 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-EEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSV   79 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-ccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCce
Confidence            678999999999874 457899999999964 3568999999999999999999999853 4689999999998865 69


Q ss_pred             eEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214          528 MGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  564 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~  564 (573)
                      ||.+.++++++..++..+.||+|+..     ..|+|+++++|
T Consensus        80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            99999999999877777999999753     37999999874

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.75  E-value=4.6e-18  Score=144.38  Aligned_cols=102  Identities=26%  Similarity=0.523  Sum_probs=89.0

Q ss_pred             eEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC---CCcEEEEEEEeCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG  337 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~---~~~~l~i~v~d~~~  337 (573)
                      |+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||+|||+|.|.+...   ..+.|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999999987 8999999999975445678999999999999999999987654   35689999999999


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      .++|++||++.+++.++..   ...|+++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~  106 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE---DRNWMGR  106 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence            9899999999999999973   3466665

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.3e-17  Score=142.06  Aligned_cols=104  Identities=21%  Similarity=0.284  Sum_probs=88.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEc-----CcceeEeecccCCCCCCeeeeEEEEEecc---CCCCEEEEEEEeC
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMK-----KSETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH  520 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~V~d~  520 (573)
                      .|+|+|++|++|+..+ .|.+||||++++.     ...++++|+++++|.||+|||+|+|.+.+   +....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999887 4899999999983     22246789999999999999999999973   3445799999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      +..++ ++||++.++++++..++....|++|...
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            87664 6999999999999988888999999653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.75  E-value=1.3e-17  Score=142.93  Aligned_cols=103  Identities=23%  Similarity=0.466  Sum_probs=87.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|+||+..+ .|.+||||++++...   ..++||++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            378999999999999988 789999999999632   2467999999999999999999998642 23579999999887


Q ss_pred             CC--CceeEEEEEEcceeeecCeEeEEEEc
Q 008214          523 FG--KDYMGRCILTLTRVILEGEYTDCFEL  550 (573)
Q Consensus       523 ~~--~d~lG~~~i~l~~l~~~~~~~~~~~L  550 (573)
                      .+  +++||.+.|+|.++..+....+||.|
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            64  36999999999999876667999986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.75  E-value=1.3e-17  Score=144.67  Aligned_cols=110  Identities=20%  Similarity=0.406  Sum_probs=94.2

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR  331 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~  331 (573)
                      +....+.|.|+|++|+||+.++.. |.+||||++++.+..  ..++||++++++.||+|||+|.|.+...  ....|.+.
T Consensus        10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~   89 (128)
T cd08392          10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS   89 (128)
T ss_pred             EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence            345679999999999999998875 899999999998654  3367999999999999999999998643  35689999


Q ss_pred             EEeCCCCCCCCceEEEEEEccccCCC---ceeEEEEEe
Q 008214          332 IYDDEGIQSSELIGCAQVRLCELEPG---KVKDVWLKL  366 (573)
Q Consensus       332 v~d~~~~~~d~~lG~~~i~l~~l~~~---~~~~~w~~L  366 (573)
                      |||++.++++++||++.|+|.++...   .....|++|
T Consensus        90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            99999989999999999999998443   466789987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.74  E-value=4.2e-17  Score=143.55  Aligned_cols=119  Identities=22%  Similarity=0.401  Sum_probs=100.1

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC---------CCcEEEEEEE
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY  333 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~---------~~~~l~i~v~  333 (573)
                      .|+|+|++|++|+.+|..|.+||||+++++   +++++|++++++.||.|||+|.|.+...         ....|.++||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            589999999999999999999999999997   5688999999999999999999975432         1257999999


Q ss_pred             eCCCCCCCCceEEEEE-EccccC---CCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          334 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      |++..++|++||++.+ ++..+.   .+.....|++|.+      .+...|+|.+++++.+
T Consensus        79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~  133 (135)
T cd04017          79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIE  133 (135)
T ss_pred             eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEE
Confidence            9999889999999986 444443   3466789999953      3468999999999976

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.74  E-value=3.8e-17  Score=142.61  Aligned_cols=105  Identities=34%  Similarity=0.507  Sum_probs=90.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~  521 (573)
                      .+.|+|+|++|+||+..+..+.+||||++++...   ..++||++++++.||+|||+|.|.+..  .....|.|.|||++
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~   94 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK   94 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence            4789999999999999998899999999999532   357899999999999999999999863  24578999999998


Q ss_pred             CC--C-CceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          522 TF--G-KDYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       522 ~~--~-~d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      ..  + +++||.+.+++.++..++...+||+|.
T Consensus        95 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          95 SFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             cccCCCCceEEEEEEecccccccCCccceEECc
Confidence            74  3 479999999999998777779999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.74  E-value=1.8e-17  Score=142.46  Aligned_cols=105  Identities=17%  Similarity=0.235  Sum_probs=89.4

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc----ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEe
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD  519 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d  519 (573)
                      ..+.|.|+|++|+||+..+..+.+||||++++-..    ..++||++++++.||+|||+|+|.+..  ..+..|.++|||
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            35789999999999999888889999999998422    247899999999999999999999863  356799999999


Q ss_pred             CCCCCC-ceeEEEEEEcceeeec-CeEeEEEEc
Q 008214          520 HDTFGK-DYMGRCILTLTRVILE-GEYTDCFEL  550 (573)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~-~~~~~~~~L  550 (573)
                      .+..++ ++||.+.|+|+++... +....||.|
T Consensus        92 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          92 VGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            988765 6999999999999554 346889976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.74  E-value=2.3e-17  Score=143.55  Aligned_cols=111  Identities=25%  Similarity=0.410  Sum_probs=97.5

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec---CCCcEEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~~l~i~v~  333 (573)
                      +....+.|.|+|++|++|+..+..+.+||||++++.+.+.+..+|++++++.||+|||+|.|.+..   .....|.++||
T Consensus        11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~   90 (125)
T cd08386          11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL   90 (125)
T ss_pred             ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence            345678999999999999999988999999999997555677899999999999999999997532   23467999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      |++..+++++||++.+++.++..+.....|+.|+
T Consensus        91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            9999889999999999999998888889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.74  E-value=1.6e-17  Score=143.75  Aligned_cols=110  Identities=30%  Similarity=0.404  Sum_probs=97.3

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEE-Eec--CCCcEEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY  333 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~-v~~--~~~~~l~i~v~  333 (573)
                      +....+.|.|+|++|+||+..+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +..  .....|.++||
T Consensus        11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~   89 (124)
T cd08389          11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY   89 (124)
T ss_pred             ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence            44567899999999999999998889999999998776677889999887 999999999998 542  24668999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      |++.++++++||++.++|+++..+.....|++|+
T Consensus        90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             ECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            9999999999999999999998888899999985

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=1.7e-17  Score=139.46  Aligned_cols=99  Identities=31%  Similarity=0.410  Sum_probs=89.4

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      .|.|+|++|++|+..+..+.+||||+++++   ++.++|++++++.||+|||+|.|.+.++..+.|.|+|||++.   ++
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~   74 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK   74 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence            378999999999998888999999999997   578999999999999999999999998777899999999885   88


Q ss_pred             ceEEEEEEccccCCC--ceeEEEEEee
Q 008214          343 LIGCAQVRLCELEPG--KVKDVWLKLV  367 (573)
Q Consensus       343 ~lG~~~i~l~~l~~~--~~~~~w~~L~  367 (573)
                      +||++.++|.++...  ...+.|++|.
T Consensus        75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~  101 (105)
T cd04050          75 SLGSLTLPLSELLKEPDLTLDQPFPLD  101 (105)
T ss_pred             ccEEEEEEHHHhhccccceeeeeEecC
Confidence            999999999998654  3678999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.74  E-value=3.9e-17  Score=140.90  Aligned_cols=118  Identities=26%  Similarity=0.524  Sum_probs=99.6

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~  343 (573)
                      |.|+|++|++|++++..|.+||||+++++  +...++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~   78 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV   78 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence            78999999999999999999999999986  2335799999999999999999999864 34689999999999999999


Q ss_pred             eEEEEEEccccCCC-ceeEEEEEeeecccccCCCcceeEEEEEEE
Q 008214          344 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVHLELL  387 (573)
Q Consensus       344 lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~  387 (573)
                      ||++.+++..+..+ ...+.|++|.+.   .......|+|++.+.
T Consensus        79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~  120 (121)
T cd04054          79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence            99999999888653 346899999653   224457899988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.74  E-value=4.4e-17  Score=143.04  Aligned_cols=115  Identities=24%  Similarity=0.458  Sum_probs=100.1

Q ss_pred             ceEEEEEEEEeeeccCCCCC----------CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEE
Q 008214          261 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV  330 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i  330 (573)
                      .|.|+|+|++|++|...+..          +.+||||+++++  +.+..+|++++++.||.|||+|.|.+.  ....|.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~   78 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL   78 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence            58999999999999988752          578999999997  234578999999999999999999997  3468999


Q ss_pred             EEEeCCCCCCCCceEEEEEEccccCC--CceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          331 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      .|||++..++++++|.+.++|.++..  +...+.|++|.          ..|+|++.+.|.
T Consensus        79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~  129 (132)
T cd04014          79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELK  129 (132)
T ss_pred             EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEe
Confidence            99999988889999999999999977  56689999983          459999999986

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.74  E-value=4e-17  Score=141.25  Aligned_cols=118  Identities=26%  Similarity=0.533  Sum_probs=98.4

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC--C
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S  341 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~--d  341 (573)
                      |+|+|++|++|+..+..+.+||||++++.  +.+.++|++++++.||.|||+|.|.+..  .+.|.|+|||++..++  |
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d   77 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ   77 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence            78999999999999988999999999995  2567899999999999999999999974  6799999999998765  5


Q ss_pred             CceEEEEEEccccCCCc-eeEEEEEeeecccccCCCcceeEEEEEE
Q 008214          342 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVHLEL  386 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~G~i~l~l  386 (573)
                      ++||++.+++.++.... ....|++|.+... ...+...|+|.+++
T Consensus        78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~  122 (123)
T cd08382          78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL  122 (123)
T ss_pred             ceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence            89999999999986543 3477999854332 23456688888765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.74  E-value=1.5e-17  Score=142.44  Aligned_cols=106  Identities=25%  Similarity=0.471  Sum_probs=90.8

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC-CCcEEEEEEEeCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~d~~  336 (573)
                      ..|.|.|+|++|+||+.++ .|.+||||++++.+...  .++||++++++.||+|||+|.|.+... ....|.|.|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4689999999999999988 78999999999986443  356899999999999999999998643 2347889999998


Q ss_pred             CCC-CCCceEEEEEEccccCCCceeEEEEEe
Q 008214          337 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       337 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      ... ++++||++.+++.++..+.....|+.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            765 478999999999999877778899875

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.74  E-value=3e-17  Score=142.28  Aligned_cols=112  Identities=29%  Similarity=0.525  Sum_probs=98.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  527 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  527 (573)
                      .|+|+|++|++|+..+..+.+||||++++++  .+++|++++++.||.|||+|.|.+.......|.|+|||++..++ ++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~   78 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF   78 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence            4899999999999998888999999999975  67899999999999999999999987667789999999998765 79


Q ss_pred             eEEEEEEcceeeecCeEeEEEEcCC---------CCCeEEEEEE
Q 008214          528 MGRCILTLTRVILEGEYTDCFELDG---------TKSGKLKLHL  562 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~~~~~~~L~~---------~~~G~i~l~l  562 (573)
                      ||++.+++.++...+....||.|..         ...|.|++.+
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            9999999999987666789999964         2368888875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.74  E-value=4.1e-17  Score=141.96  Aligned_cols=104  Identities=30%  Similarity=0.546  Sum_probs=87.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC---CCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|++|+..+..+.+||||++++..   ...++||++++++.||+|||+|.|.+...   ....|.|+|||+
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~   94 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY   94 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence            478999999999999998888999999999964   23577999999999999999999986432   457899999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      +..+. ++||++.++|++.. .....+||+|+
T Consensus        95 ~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          95 DRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             CCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            98765 69999999999833 33347899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.73  E-value=6.7e-17  Score=140.90  Aligned_cols=116  Identities=31%  Similarity=0.468  Sum_probs=100.8

Q ss_pred             EEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCCCCCCceE
Q 008214          268 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG  345 (573)
Q Consensus       268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~~~d~~lG  345 (573)
                      |++|++|+.  ..|.+||||++++.   +..++|++++++.||+|||+|.|.+...  ..+.|.|+|||++..++|++||
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG   76 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG   76 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence            688999997  67899999999996   5678999999999999999999999754  4679999999999988999999


Q ss_pred             EEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214          346 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (573)
Q Consensus       346 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~  392 (573)
                      ++.++++++..+.....|++|....    .....|+|++++.|.|..
T Consensus        77 ~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373          77 SATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPD  119 (127)
T ss_pred             EEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCC
Confidence            9999999999888889999996432    334579999999998743

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.73  E-value=9.8e-17  Score=139.45  Aligned_cols=118  Identities=21%  Similarity=0.347  Sum_probs=101.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCc
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD  526 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d  526 (573)
                      .++|+|+|++|++|+..+..|.+||||++.+++  .+++|++++++.||.|||.|.|.+.+. ...|.|+|||++..+++
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~   78 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDE   78 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            368999999999999988889999999999976  678999999999999999999988764 67899999999987778


Q ss_pred             eeEEEEEEcceeeecCeEeEEEEcC-------CCCCeEEEEEEEEEecCC
Q 008214          527 YMGRCILTLTRVILEGEYTDCFELD-------GTKSGKLKLHLKWMPQPI  569 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~~~~~~~~L~-------~~~~G~i~l~l~~~p~~~  569 (573)
                      +||.+.+++.++.  ....++|+|.       +...|+|.+++...+.++
T Consensus        79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~~  126 (126)
T cd04046          79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDLT  126 (126)
T ss_pred             ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccccC
Confidence            9999999998753  3446788883       235899999999887654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.73  E-value=6.2e-17  Score=140.99  Aligned_cols=117  Identities=26%  Similarity=0.461  Sum_probs=100.1

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      .|+|+|++|++|+..+..+.+||||++++.....+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            57899999999999998899999999997643345689999999999999999999998765678999999999888899


Q ss_pred             ceEEEEEEccccCC---CceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          343 LIGCAQVRLCELEP---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       343 ~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      +||++.++|.++..   +...+.|++|.          ..|++++.+.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence            99999999987632   44678999984          258999998885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.73  E-value=8.9e-17  Score=139.81  Aligned_cols=105  Identities=31%  Similarity=0.482  Sum_probs=87.7

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEE-ec--cCCCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~-v~--~~~~~~L~i~V~d~~  521 (573)
                      .+.|+|+|++|+||+..+.. +.+||||++++.. ...+.||++++++.||.|||+|.|. +.  +.....|.++|||++
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d   94 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD   94 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence            47899999999999998875 8899999999853 2456799999999999999999993 43  223457999999998


Q ss_pred             CCCC-ceeEEEEEEcceeeec--CeEeEEEEcC
Q 008214          522 TFGK-DYMGRCILTLTRVILE--GEYTDCFELD  551 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~--~~~~~~~~L~  551 (573)
                      ..++ ++||++.++|+++...  ++...|.+|+
T Consensus        95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          95 RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             CCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            8765 6999999999998655  5678898875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.73  E-value=2.8e-17  Score=143.40  Aligned_cols=109  Identities=26%  Similarity=0.437  Sum_probs=95.6

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEE
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~  333 (573)
                      ....+.|+|+|++|+||+..+..+.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+...  ....|.+.||
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~   91 (127)
T cd04030          12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK   91 (127)
T ss_pred             eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence            35679999999999999999988999999999997543  4578999999999999999999998643  3568999999


Q ss_pred             eCCCC--CCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          334 DDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       334 d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      |++..  +++++||++.++|.++..+.....|++|
T Consensus        92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             ECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            99875  6899999999999999887888899987

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.73  E-value=9.6e-17  Score=140.89  Aligned_cols=116  Identities=23%  Similarity=0.453  Sum_probs=100.1

Q ss_pred             eeEEEEEEEEeecCCCCCCC----------CCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEE
Q 008214          447 RGVLSVTVILAENLPASDLM----------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAE  516 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~  516 (573)
                      .|.|+|+|++|++|...+..          +.+||||++.+++ ....+|+++++|.||.|||+|+|.+.  ....|.|.
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~   79 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELT   79 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEE
Confidence            58999999999999987752          5789999999975 34578999999999999999999997  35789999


Q ss_pred             EEeCCCCCC-ceeEEEEEEcceeee--cCeEeEEEEcCCCCCeEEEEEEEEEec
Q 008214          517 VWDHDTFGK-DYMGRCILTLTRVIL--EGEYTDCFELDGTKSGKLKLHLKWMPQ  567 (573)
Q Consensus       517 V~d~~~~~~-d~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~G~i~l~l~~~p~  567 (573)
                      |||++..+. ++||++.++|+++..  ....+.||+|+  ++|+|+++++|...
T Consensus        80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~~  131 (132)
T cd04014          80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKGS  131 (132)
T ss_pred             EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEecC
Confidence            999987755 699999999999987  45568999998  47999999999753

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.73  E-value=2.7e-17  Score=138.26  Aligned_cols=94  Identities=15%  Similarity=0.294  Sum_probs=82.1

Q ss_pred             eEEEEEEEEeeeccCCCCC----CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC-CcEEEEEEEeCC
Q 008214          262 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE  336 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~-~~~l~i~v~d~~  336 (573)
                      |+|.|+|++|++|+..+..    +.+||||+++++   ++.+||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence            7899999999999987632    358999999996   66789999999999999999999987543 357999999999


Q ss_pred             CCCCCCceEEEEEEccccCCCc
Q 008214          337 GIQSSELIGCAQVRLCELEPGK  358 (573)
Q Consensus       337 ~~~~d~~lG~~~i~l~~l~~~~  358 (573)
                      ..++|++||++.++|.+|..+.
T Consensus        78 ~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          78 KFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCCcceEEEEEEHHHHHhhC
Confidence            9999999999999999986543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.72  E-value=1.7e-17  Score=144.28  Aligned_cols=93  Identities=40%  Similarity=0.699  Sum_probs=85.6

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~  525 (573)
                      .-|.|+|.|.+|.||...|..+++||||.+++++  ++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.++.
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS   80 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECC--eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence            3589999999999999999889999999999987  888999999999999999999999986 6789999999999976


Q ss_pred             -ceeEEEEEEcceeeec
Q 008214          526 -DYMGRCILTLTRVILE  541 (573)
Q Consensus       526 -d~lG~~~i~l~~l~~~  541 (573)
                       |+||.++|+|..+...
T Consensus        81 dD~mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEA   97 (168)
T ss_pred             ccccceeeeccHHHHHH
Confidence             7999999999887643

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.72  E-value=6.8e-17  Score=146.11  Aligned_cols=109  Identities=33%  Similarity=0.474  Sum_probs=93.0

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEE
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVW  518 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~  518 (573)
                      ...|.|+|+|++|+||+..+..+.+||||++++..   ...++||++++++.||.|||+|.|.+.   +..+..|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            35689999999999999999889999999999842   235789999999999999999999853   223458999999


Q ss_pred             eCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          519 DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       519 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      |++..++ ++||++.+++.++...+....||.+.+.
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~  139 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE  139 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence            9998874 7999999999999877777889988653

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=3.8e-17  Score=141.77  Aligned_cols=109  Identities=20%  Similarity=0.445  Sum_probs=94.8

Q ss_pred             cCcceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          258 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      ....|.|.|+|++|+||+..+ ..+.+||||++++.+...  .+++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v   89 (123)
T cd08521          10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV   89 (123)
T ss_pred             eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            356799999999999999988 678999999999975432  468999999999999999999998643  356899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      ||++..+++++||++.++|.++..+.....|++|
T Consensus        90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             EeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            9999988999999999999999777778899975

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.72  E-value=8.4e-17  Score=139.82  Aligned_cols=118  Identities=31%  Similarity=0.541  Sum_probs=99.2

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-
Q 008214          448 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  525 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-  525 (573)
                      |.|+|+|++|++|+..+ ..+.+||||++++++....++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+. 
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence            78999999999999755 446789999999975236789999999999999999999988 457799999999988755 


Q ss_pred             ceeEEEEEEcceeeecCeEe-EEEEc--CCCCCeEEEEEEEEEe
Q 008214          526 DYMGRCILTLTRVILEGEYT-DCFEL--DGTKSGKLKLHLKWMP  566 (573)
Q Consensus       526 d~lG~~~i~l~~l~~~~~~~-~~~~L--~~~~~G~i~l~l~~~p  566 (573)
                      ++||.+.+++.++..+.... .++.+  .+...|+|+++++|.|
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            69999999999998776654 34443  4556899999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=7.2e-17  Score=140.00  Aligned_cols=104  Identities=26%  Similarity=0.534  Sum_probs=89.6

Q ss_pred             eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|+||+..+ ..+.+||||++++...   ..+++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   92 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH   92 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence            478999999999999988 6789999999998421   2468999999999999999999998642  356899999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEc
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFEL  550 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L  550 (573)
                      +..++ ++||++.++|.++..+.....||+|
T Consensus        93 ~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          93 DRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            98765 6999999999999777777999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.72  E-value=1e-16  Score=138.74  Aligned_cols=105  Identities=31%  Similarity=0.431  Sum_probs=90.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEc-CcceeEeecccCCCCCCeeeeEEEEE-ecc--CCCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~-~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|+||+..+..|..||||++.+. ....++||+++++ .||+|||+|.|. +..  ..+..|.++|||++.
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~   93 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER   93 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence            47899999999999999888889999998874 3346789999887 999999999998 542  246789999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      .+. ++||.+.|+|+++..++....||+|++
T Consensus        94 ~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          94 MRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            765 799999999999987778899999973

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.72  E-value=7.4e-17  Score=139.91  Aligned_cols=111  Identities=24%  Similarity=0.349  Sum_probs=97.5

Q ss_pred             ccCcceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~  333 (573)
                      +....+.|.|+|++|++|+..+ ..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus         9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~   88 (123)
T cd08390           9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY   88 (123)
T ss_pred             ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence            3456789999999999999988 678899999999976556678999999999999999999998653  2357999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      |++..+++++||++.++|.++........|++|.
T Consensus        89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             ECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            9998888999999999999998888888999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.72  E-value=6.6e-17  Score=136.91  Aligned_cols=98  Identities=24%  Similarity=0.380  Sum_probs=84.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCce
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  527 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~  527 (573)
                      +.|.|+|++|++|+..   +..||||++.+++  ++.+|++.++ .||.|||.|.|.+.+. +..|.|+|||++..++|+
T Consensus         2 ~~L~V~Vv~Ar~L~~~---~~~dPYV~Ik~g~--~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD~   74 (127)
T cd08394           2 SLLCVLVKKAKLDGAP---DKFNTYVTLKVQN--VKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDTL   74 (127)
T ss_pred             ceEEEEEEEeeCCCCC---CCCCCeEEEEECC--EEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCCc
Confidence            5899999999999764   3459999999976  7889999877 5999999999999875 445999999999887899


Q ss_pred             eEEEEEEcceeeecCeE--eEEEEcCC
Q 008214          528 MGRCILTLTRVILEGEY--TDCFELDG  552 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~~--~~~~~L~~  552 (573)
                      ||++.|+|+++......  .+||+|+.
T Consensus        75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          75 VGTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             eEEEEEEhHHcccCCCCCCCccEecCh
Confidence            99999999999866444  89999974

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.72  E-value=9.9e-17  Score=141.16  Aligned_cols=116  Identities=27%  Similarity=0.521  Sum_probs=98.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-----ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  523 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~  523 (573)
                      .|+|+|++|++|+..+..|.+||||++++.+.     ..+++|+++++|.||.|||+|.|.+.. ....|.|+|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence            38899999999999998899999999999653     125789999999999999999999874 356899999999988


Q ss_pred             CC-ceeEEEEEEcceeeecCe------EeEEEEcCCC-----CCeEEEEEEEEE
Q 008214          524 GK-DYMGRCILTLTRVILEGE------YTDCFELDGT-----KSGKLKLHLKWM  565 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~------~~~~~~L~~~-----~~G~i~l~l~~~  565 (573)
                      ++ ++||++.++++++.....      ..+||+|++.     ..|+|+++++|.
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            65 699999999999886543      3689999742     489999999884

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.2e-16  Score=139.20  Aligned_cols=115  Identities=32%  Similarity=0.642  Sum_probs=96.9

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC----
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----  338 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~----  338 (573)
                      .|+|+|++|++|+..|..|.+||||+++++   ...++|++++++.||.|||+|.|.+..+ ...|.|+|||+|..    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~   77 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR   77 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence            689999999999999988999999999986   4678999999999999999999988654 46899999999852    


Q ss_pred             -------CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEE
Q 008214          339 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL  386 (573)
Q Consensus       339 -------~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l  386 (573)
                             +.+++||++.+++.++..  ....|+.|.+..   .....+|+|.+++
T Consensus        78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~~  127 (127)
T cd04027          78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLHI  127 (127)
T ss_pred             cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEEC
Confidence                   468999999999998753  357999997543   3456799998863

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=6.5e-17  Score=140.71  Aligned_cols=107  Identities=24%  Similarity=0.446  Sum_probs=90.9

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC---CCcEEEEEEE
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY  333 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~---~~~~l~i~v~  333 (573)
                      ...|.|.|+|++|++|+..+..+.+||||++++.+..  ..+++|++++++.||+|||+|.|.+...   ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            4579999999999999999888999999999997432  3578899999999999999999986432   4568999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      |++..+++++||++.++|++.. ......|++|
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L  124 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL  124 (125)
T ss_pred             eCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence            9999889999999999999832 3335689987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.71  E-value=6.2e-17  Score=137.34  Aligned_cols=102  Identities=25%  Similarity=0.411  Sum_probs=89.9

Q ss_pred             CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeec-Ce
Q 008214          465 LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE-GE  543 (573)
Q Consensus       465 ~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~-~~  543 (573)
                      .+|.+||||++++++ ....+|++++++.||.|||.|.|.+.++....|.|+|+|++..++++||.+.++|+++... ..
T Consensus         9 ~~G~~dPYv~v~v~~-~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNG-KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECC-EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence            468899999999975 3467999999999999999999999887778899999999988557999999999998754 44


Q ss_pred             EeEEEEcCCCCCeEEEEEEEEEec
Q 008214          544 YTDCFELDGTKSGKLKLHLKWMPQ  567 (573)
Q Consensus       544 ~~~~~~L~~~~~G~i~l~l~~~p~  567 (573)
                      ..+||+|.+.+.|+|+++++|+|.
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEecC
Confidence            589999998889999999999984

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.71  E-value=2.5e-16  Score=135.78  Aligned_cols=112  Identities=33%  Similarity=0.589  Sum_probs=96.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  526 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d  526 (573)
                      |.|.|+|++|++|+..+..+.+||||++++++  ..++|++++++.||.|||+|.|.+.+. ...|.|+|||++..+. +
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~   77 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPE   77 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCc
Confidence            67999999999999998889999999999975  567999999999999999999998753 5789999999988654 7


Q ss_pred             eeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214          527 YMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  564 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~  564 (573)
                      +||++.+++.++..+  ..+||+|...     ..|+|.+++++
T Consensus        78 ~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          78 FLGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             eeeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence            999999999998643  3689999543     48999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.71  E-value=1.4e-16  Score=137.50  Aligned_cols=112  Identities=27%  Similarity=0.506  Sum_probs=96.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-cee
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM  528 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l  528 (573)
                      |+|+|++|++|+..+..|.+||||++.+++ ....||++++++.||.|||.|.|.+... ...|.|+|||++..+. ++|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~i   79 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVI   79 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEE
Confidence            789999999999999999999999999975 3457999999999999999999998743 4789999999998765 799


Q ss_pred             EEEEEEcceeeecC-eEeEEEEcCCCC-----CeEEEEEEE
Q 008214          529 GRCILTLTRVILEG-EYTDCFELDGTK-----SGKLKLHLK  563 (573)
Q Consensus       529 G~~~i~l~~l~~~~-~~~~~~~L~~~~-----~G~i~l~l~  563 (573)
                      |++.+++.++...+ ..++|++|.+..     .|+|+++++
T Consensus        80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999999887543 368999997632     799998764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.71  E-value=2.6e-16  Score=137.11  Aligned_cols=116  Identities=33%  Similarity=0.510  Sum_probs=99.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  526 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d  526 (573)
                      .|+|+|.+|++|+..+..+.+||||++.+++. ...+||++++++.||.|||+|.|.+.......|.|+|||++..++ +
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            58999999999999988899999999998643 356899999999999999999999987656789999999998755 6


Q ss_pred             eeEEEEEEcceeeec---CeEeEEEEcCCCCCeEEEEEEEEEe
Q 008214          527 YMGRCILTLTRVILE---GEYTDCFELDGTKSGKLKLHLKWMP  566 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~G~i~l~l~~~p  566 (573)
                      +||++.++|.++...   .....|++|.+  +|++++.+.+.-
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~  122 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEG  122 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEee
Confidence            999999999876543   24578999976  699999988753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.71  E-value=8.1e-17  Score=143.03  Aligned_cols=103  Identities=39%  Similarity=0.712  Sum_probs=90.6

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--------------------------CCeEEeeeeCCCCCcee
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--------------------------EKTKKSKTINNDLNPIW  312 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--------------------------~~~~~T~~~~~~~nP~w  312 (573)
                      ++.+.|.|+|++|++|..+|..|.+||||++++.+..                          .+.++|++++++.||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            6889999999999999999999999999999996421                          13478999999999999


Q ss_pred             ccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       313 ~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      ||+|.|.+.+...+.|.|+|||++    +++||++.++++++.. ...+.|++|
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999998766789999999997    8999999999999983 446899875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.71  E-value=1.7e-16  Score=138.05  Aligned_cols=105  Identities=32%  Similarity=0.482  Sum_probs=90.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|+||+..+..+.+||||++++.. ...+.+|++++++.||.|||+|.|.+.   ......|.++|||++.
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~   94 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR   94 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence            468999999999999998889999999999842 245789999999999999999999753   2234689999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      .++ ++||.+.++++++........|+.|.
T Consensus        95 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          95 FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            765 69999999999998777789999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.70  E-value=7.3e-17  Score=136.73  Aligned_cols=101  Identities=27%  Similarity=0.472  Sum_probs=89.0

Q ss_pred             EEEEEEEeeeccCCCC-CCCCCcEEEEEEecCCCCeEEeeeeCCCCCcee-ccEEEEEEecC--CCcEEEEEEEeCCCCC
Q 008214          264 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ  339 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w-~e~f~f~v~~~--~~~~l~i~v~d~~~~~  339 (573)
                      |.|+|++|++|+.++. .+.+||||+++++   +++++|++++++.||.| ||+|.|.+...  ..+.|.|+|||++..+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence            5799999999998874 6889999999997   47899999999999999 99999998754  3468999999999988


Q ss_pred             CCCceEEEEEEccccCC---CceeEEEEEee
Q 008214          340 SSELIGCAQVRLCELEP---GKVKDVWLKLV  367 (573)
Q Consensus       340 ~d~~lG~~~i~l~~l~~---~~~~~~w~~L~  367 (573)
                      ++++||++.+++.++..   +...+.|++|.
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            99999999999999966   34578899985

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.70  E-value=5.1e-17  Score=142.16  Aligned_cols=105  Identities=25%  Similarity=0.249  Sum_probs=85.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+..|.+||||++++...   ..++||++++++.||+|||+|.|.+..  ..+..|.|+|||++
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d   93 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST   93 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence            4679999999999999988899999999999432   236789999999999999999999864  35678999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      ..++ ++||++.|+...  .+...++|..+...
T Consensus        94 ~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~  124 (136)
T cd08406          94 EDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS  124 (136)
T ss_pred             CCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence            8765 799999998764  33445667665443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.70  E-value=1.3e-16  Score=141.30  Aligned_cols=102  Identities=27%  Similarity=0.421  Sum_probs=86.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEec---------------cCCC
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVE---------------DGLH  510 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~---------------~~~~  510 (573)
                      .|+|+|++|+||+.  .+|.+||||++++.+.   ..+++|+++++|.||+|||+|.|.+.               +...
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            38899999999998  5688999999999652   25679999999999999999999985               1223


Q ss_pred             CEEEEEEEeCCCCCC-ceeEEEEEEcceeeec-CeEeEEEEcCC
Q 008214          511 DMLIAEVWDHDTFGK-DYMGRCILTLTRVILE-GEYTDCFELDG  552 (573)
Q Consensus       511 ~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~-~~~~~~~~L~~  552 (573)
                      ..|.|+|||++..+. ++||++.|++.++... .....||+|..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            579999999988754 6999999999998876 56689999954

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.70  E-value=4e-16  Score=135.30  Aligned_cols=106  Identities=25%  Similarity=0.355  Sum_probs=91.4

Q ss_pred             eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|+||+..+ ..+.+||||++++.. .....+|++++++.||+|||.|.|.+...  ....|.|+|||++.
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~   92 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR   92 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence            478999999999999988 678899999999842 23567899999999999999999998643  34589999999988


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      .++ ++||++.++|+++........|++|+.
T Consensus        93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            765 699999999999998888899999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=2.1e-16  Score=133.84  Aligned_cols=100  Identities=22%  Similarity=0.373  Sum_probs=84.5

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d  341 (573)
                      |.|.|+|++|++|+..+   ..||||++.++   +++.+|++.++ .||.|||+|.|.+.+... .|.|+|||++.. .|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~-~D   72 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI-WD   72 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc-CC
Confidence            68999999999997544   46899999997   67788988877 599999999999986544 599999999865 89


Q ss_pred             CceEEEEEEccccCCCcee--EEEEEeeecc
Q 008214          342 ELIGCAQVRLCELEPGKVK--DVWLKLVKDL  370 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~  370 (573)
                      ++||++.++|.++..+...  ..|++|.+..
T Consensus        73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~  103 (127)
T cd08394          73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV  103 (127)
T ss_pred             CceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence            9999999999999765444  8999997544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.69  E-value=2.3e-16  Score=135.81  Aligned_cols=94  Identities=26%  Similarity=0.415  Sum_probs=83.0

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec-CCCcEEEEEEEeCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDEG  337 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~-~~~~~l~i~v~d~~~  337 (573)
                      +..|.|+|+|++|++|+ .+..+.+||||+++++   +++++|++++++.||+|||+|.|.... ...+.|.|+|||++.
T Consensus        25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~  100 (127)
T cd04032          25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN  100 (127)
T ss_pred             CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence            67899999999999998 4667889999999996   558999999999999999999997533 356799999999999


Q ss_pred             CCCCCceEEEEEEccccCC
Q 008214          338 IQSSELIGCAQVRLCELEP  356 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~  356 (573)
                      .++|++||++.++|.....
T Consensus       101 ~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         101 GWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCCCCeeEEEEEEecCCce
Confidence            9999999999999987653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.69  E-value=1e-16  Score=140.06  Aligned_cols=102  Identities=28%  Similarity=0.375  Sum_probs=82.9

Q ss_pred             eeEEEEEEEEeecCCCCCC--CCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEe
Q 008214          447 RGVLSVTVILAENLPASDL--MGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD  519 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d  519 (573)
                      .+.|.|.|++|+||+..+.  .+.+||||++++...   ..++||++++++.||+|||.|.|.+..  ..+..|.|+|||
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d   93 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN   93 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence            4789999999999999873  355899999999642   246799999999999999999999874  246689999999


Q ss_pred             CCCCCC-ceeEEEEEEcceeeecCeEeEEEEc
Q 008214          520 HDTFGK-DYMGRCILTLTRVILEGEYTDCFEL  550 (573)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L  550 (573)
                      ++..++ ++||++.+++..  .+.+..+|..+
T Consensus        94 ~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m  123 (138)
T cd08407          94 QDSPGQSLPLGRCSLGLHT--SGTERQHWEEM  123 (138)
T ss_pred             CCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence            998876 799999999975  33334555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.69  E-value=1.5e-16  Score=138.37  Aligned_cols=115  Identities=27%  Similarity=0.488  Sum_probs=97.3

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecCC----CcEEEEEEEeCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG  337 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~~----~~~l~i~v~d~~~  337 (573)
                      +|+|+|++|++|+..+..+.+||||++++.+  .+.++|+++. ++.||.|||.|.|.+.+..    ...|.|+|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            4789999999999988889999999999973  3667888874 6899999999999998763    5789999999998


Q ss_pred             CCCCCceEEEEEEccccCCCce-----eEEEEEeeecccccCCCcceeEEEE
Q 008214          338 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVHL  384 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~i~l  384 (573)
                      .++|++||++.+++.++..+..     ...|+.|.+.     .++..|.|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence            8889999999999999976543     4789998643     4778888864

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.69  E-value=5.6e-16  Score=135.08  Aligned_cols=112  Identities=28%  Similarity=0.488  Sum_probs=97.8

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCCC-ceeEE
Q 008214          454 VILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGR  530 (573)
Q Consensus       454 v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~~-d~lG~  530 (573)
                      |++|++|+.  ..|.+||||++++++  .+++|++++++.||+|||+|.|.+..+  ....|.|+|||++..++ ++||+
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~   77 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS   77 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence            679999998  578899999999976  678999999999999999999999754  46799999999988765 69999


Q ss_pred             EEEEcceeeecCeEeEEEEcCCC----CCeEEEEEEEEEecCC
Q 008214          531 CILTLTRVILEGEYTDCFELDGT----KSGKLKLHLKWMPQPI  569 (573)
Q Consensus       531 ~~i~l~~l~~~~~~~~~~~L~~~----~~G~i~l~l~~~p~~~  569 (573)
                      +.++++++..++....|++|.+.    ..|+|+++++|.|...
T Consensus        78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence            99999999988888999999532    3689999999998653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.69  E-value=1.7e-16  Score=143.50  Aligned_cols=109  Identities=21%  Similarity=0.380  Sum_probs=94.6

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEEec---CCCcEEEEEEE
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~~l~i~v~  333 (573)
                      .+.|.|.|+|++|+||+..+..+.+||||++++.+.  +..+++|++++++.||+|||+|.|.+..   .....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            478999999999999999998899999999999643  2357899999999999999999998532   23458999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      |++.++++++||++.+++.++......+.|+.+.
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence            9999888999999999999997766778998874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.69  E-value=6.4e-16  Score=136.95  Aligned_cols=120  Identities=23%  Similarity=0.345  Sum_probs=97.2

Q ss_pred             EEEEEEeee--ccCCCCCCCCCcEEEEEEe-c-CCCCeEEeeeeCCCCCceeccEEEEEEecCC--------CcEEEEEE
Q 008214          265 EVKLVQAKG--LTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDES--------TQHLVVRI  332 (573)
Q Consensus       265 ~V~v~~a~~--L~~~d~~g~~dpyv~v~~~-~-~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~--------~~~l~i~v  332 (573)
                      .++|..|++  |+..+..+.+||||++++. + .+.++.||+++++|+||+|||+|.|.+....        ...|.++|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            345555555  7777777889999999973 2 3456899999999999999999999996432        45799999


Q ss_pred             EeCCCC-CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          333 YDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       333 ~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      ||++.+ .+|++||++.++|..+..+.....|++|..     ......|.|++++...
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR  137 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence            999986 579999999999999987777778999863     3457889999999875

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.69  E-value=3.4e-16  Score=135.45  Aligned_cols=110  Identities=26%  Similarity=0.498  Sum_probs=93.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC---c
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---D  526 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~---d  526 (573)
                      |+|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|.|.+..  .+.|.|+|||++..++   +
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~   78 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQG   78 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCc
Confidence            789999999999999889999999999964 467899999999999999999999974  6799999999988753   5


Q ss_pred             eeEEEEEEcceeeecCe-EeEEEEcCCC-------CCeEEEEEE
Q 008214          527 YMGRCILTLTRVILEGE-YTDCFELDGT-------KSGKLKLHL  562 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~~-~~~~~~L~~~-------~~G~i~l~l  562 (573)
                      +||++.++++++..... ...||+|...       ..|+|.+++
T Consensus        79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            99999999999976543 3789999432       257777765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.68  E-value=5.2e-16  Score=132.89  Aligned_cols=113  Identities=35%  Similarity=0.557  Sum_probs=97.5

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~  343 (573)
                      |+|+|++|++|+..+..+.+||||++++.+  .+.++|+++.++.||.|||+|.|.+.+...+.+.|+|||++..+++++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~--~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~   78 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL   78 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC--CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence            579999999999988888999999999962  456899999999999999999999987667799999999998889999


Q ss_pred             eEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEE
Q 008214          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVH  383 (573)
Q Consensus       344 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~  383 (573)
                      ||++.+++.++..+.....|++|.+.     .+...|.+.
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~-----g~~~~~~~~  113 (115)
T cd04040          79 LGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGAVF  113 (115)
T ss_pred             eEEEEEEHHHcCCCCcEEEEEECcCC-----CCccCceEE
Confidence            99999999999888888999998642     344555554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.68  E-value=3.1e-16  Score=137.20  Aligned_cols=110  Identities=22%  Similarity=0.300  Sum_probs=91.8

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v  332 (573)
                      +.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+  ++||++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V   89 (136)
T cd08406          10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV   89 (136)
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence            44667899999999999999998899999999999864443  5689999999999999999999864  3567899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ||+|..+++++||++.+....  .+...++|..+..
T Consensus        90 ~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~  123 (136)
T cd08406          90 AESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA  123 (136)
T ss_pred             EeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence            999999999999999987653  4555667766643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.68  E-value=2.6e-16  Score=136.57  Aligned_cols=104  Identities=39%  Similarity=0.644  Sum_probs=92.8

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecC---CCcEEEEEEEeCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG  337 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~---~~~~l~i~v~d~~~  337 (573)
                      |.|.|+|++|++|++.+..+.+||||++++.   .+.++|+++. ++.||.|||+|.|.+...   ..+.|.|+|||.+.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            7899999999999998888999999999986   5667888877 489999999999999876   35689999999999


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      .++|++||++.+++.++..+...+.|+.|.+
T Consensus        78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p  108 (124)
T cd04049          78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP  108 (124)
T ss_pred             CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence            8899999999999999988777899999864

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.68  E-value=7.4e-16  Score=135.65  Aligned_cols=117  Identities=25%  Similarity=0.468  Sum_probs=95.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC---------CCCEEEEEEEe
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---------LHDMLIAEVWD  519 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~d  519 (573)
                      .|+|+|++|++|+..+..|.+||||++.+++  .+++|+++++|.||.|||.|.|.+...         ....|.|+|||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d   79 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD   79 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence            6899999999999999999999999999975  678999999999999999999975322         12479999999


Q ss_pred             CCCCCC-ceeEEEEE-Ecceeeec---CeEeEEEEcCC--CCCeEEEEEEEEEec
Q 008214          520 HDTFGK-DYMGRCIL-TLTRVILE---GEYTDCFELDG--TKSGKLKLHLKWMPQ  567 (573)
Q Consensus       520 ~~~~~~-d~lG~~~i-~l~~l~~~---~~~~~~~~L~~--~~~G~i~l~l~~~p~  567 (573)
                      ++..++ ++||++.+ ++..+...   ....+||+|..  ...|+|.+++++.+.
T Consensus        80 ~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          80 QDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             CcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            998765 69999987 44444332   34479999963  458999999998874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.68  E-value=2.2e-16  Score=134.01  Aligned_cols=102  Identities=32%  Similarity=0.596  Sum_probs=87.0

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC---CCCEEEEEEEeCCC
Q 008214          448 GVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT  522 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~~~  522 (573)
                      |.|+|+|++|++|+..+.. +.+||||++++.. ....++|+++++|.||+|||.|.|.+...   ....|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999887 8999999999853 23568999999999999999999988643   35689999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      .+. ++||++.+++.++...   ..|+++..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~---~~~~~~~~  108 (111)
T cd04041          81 FTADDRLGRVEIDLKELIED---RNWMGRRE  108 (111)
T ss_pred             CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence            865 7999999999999744   45877653

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.68  E-value=4.5e-16  Score=136.50  Aligned_cols=110  Identities=34%  Similarity=0.565  Sum_probs=95.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCCC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  523 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~~  523 (573)
                      +.|+|+|++|++|+..+..+.+||||++.+.+   ...+++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            78999999999999988888999999999963   23578999999999999999999998754 356899999999877


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCeEE
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL  558 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i  558 (573)
                      ++ ++||++.++++++... ....||+|.+.+.|+.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence            55 6999999999999754 5688999998888864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.68  E-value=2.9e-16  Score=139.46  Aligned_cols=102  Identities=38%  Similarity=0.581  Sum_probs=89.6

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc---------------------------eeEeecccCCCCCCee
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---------------------------TRNKTRVVNDCLNPIW  497 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---------------------------~~~kT~~~~~t~nP~w  497 (573)
                      ...+.|.|+|++|++|+..+..|.+||||++.+....                           ..++|+++++|.||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            5679999999999999999999999999999985321                           2478999999999999


Q ss_pred             eeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEEEc
Q 008214          498 NQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL  550 (573)
Q Consensus       498 ne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L  550 (573)
                      ||+|.|.+.......|.|+|||++   +++||++.++++++.. ...++||+|
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999998766789999999998   6799999999999984 446999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.68  E-value=3e-16  Score=132.94  Aligned_cols=101  Identities=33%  Similarity=0.576  Sum_probs=88.2

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEEcCcceeEeecccCCCCCCee-eeEEEEEeccC--CCCEEEEEEEeCCCCCC
Q 008214          450 LSVTVILAENLPASDL-MGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVEDG--LHDMLIAEVWDHDTFGK  525 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~--~~~~L~i~V~d~~~~~~  525 (573)
                      |.|+|++|++|+..+. .+.+||||++++++  .++||++++++.||.| ||.|.|.+...  ....|.|+|||++..++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~   78 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA   78 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence            5799999999998874 68899999999976  7889999999999999 99999999753  34689999999998766


Q ss_pred             -ceeEEEEEEcceeeec---CeEeEEEEcCC
Q 008214          526 -DYMGRCILTLTRVILE---GEYTDCFELDG  552 (573)
Q Consensus       526 -d~lG~~~i~l~~l~~~---~~~~~~~~L~~  552 (573)
                       ++||++.+++.++...   .....||+|.+
T Consensus        79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence             6999999999999873   34689999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.67  E-value=3.4e-16  Score=137.66  Aligned_cols=106  Identities=22%  Similarity=0.373  Sum_probs=92.8

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEec-CCCCeEEeeeeCCCCCceeccEEEEEEecC---------------CCcE
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH  327 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~---------------~~~~  327 (573)
                      |+|+|++|++|+.+ ..+.+||||++++.. ...+.++|+++.++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 678999999999973 224678999999999999999999998765               4568


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecc
Q 008214          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL  370 (573)
Q Consensus       328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  370 (573)
                      |.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            9999999998889999999999999998777789999997654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.67  E-value=1.5e-15  Score=132.74  Aligned_cols=118  Identities=19%  Similarity=0.371  Sum_probs=96.2

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC----------CCeEEeeeeCCCCCcee-ccEEEEEEecCCCcEEEEE
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR  331 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~~T~~~~~~~nP~w-~e~f~f~v~~~~~~~l~i~  331 (573)
                      +..|++++|++|+ ++..|++||||++++.+.+          .+.++|+++++++||+| ||+|.|.+.  ..+.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            3578999999998 7778999999999997533          34789999999999999 999999985  35689999


Q ss_pred             EEeCCCCCC---CCceEEEEEEccccCCC---ceeEEEEEeeecccccCCCcceeEEEEEE
Q 008214          332 IYDDEGIQS---SELIGCAQVRLCELEPG---KVKDVWLKLVKDLDVQRDTKYRGQVHLEL  386 (573)
Q Consensus       332 v~d~~~~~~---d~~lG~~~i~l~~l~~~---~~~~~w~~L~~~~~~~~~~~~~G~i~l~l  386 (573)
                      |||++..++   +++||++.+++.++..+   .....|+++.+..   .....+|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence            999875433   79999999999999654   2366789887653   2567889988865

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.67  E-value=7.5e-16  Score=134.07  Aligned_cols=109  Identities=34%  Similarity=0.700  Sum_probs=92.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC-----
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-----  523 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~-----  523 (573)
                      .|+|+|++|++|+..+..|.+||||++++++  ..++|++++++.||.|||+|.|.+..+ ...|.|+|||++..     
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~   78 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL   78 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence            6899999999999999889999999999965  678999999999999999999998754 56899999998752     


Q ss_pred             -------CCceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEE
Q 008214          524 -------GKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHL  562 (573)
Q Consensus       524 -------~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l  562 (573)
                             .+++||.+.+++.++.  +...+||.|...     .+|+|.+++
T Consensus        79 ~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          79 KQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence                   3479999999999874  445799999753     368887764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.67  E-value=1.3e-16  Score=139.50  Aligned_cols=110  Identities=21%  Similarity=0.372  Sum_probs=91.3

Q ss_pred             cccCcceEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEE
Q 008214          256 LELKPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLV  329 (573)
Q Consensus       256 ~~~~~~G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~  329 (573)
                      .+.+..|.|.|+|++|+||...+.  .+.+||||++++.+...  .++||++++++.||+|||+|.|.+...  ....|.
T Consensus         9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~   88 (138)
T cd08407           9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVE   88 (138)
T ss_pred             EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEE
Confidence            455678999999999999999873  34589999999986443  367899999999999999999998653  456799


Q ss_pred             EEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          330 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       330 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      |+|||+|.++++++||++.+++..  .|...++|..+.
T Consensus        89 ~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml  124 (138)
T cd08407          89 LEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML  124 (138)
T ss_pred             EEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence            999999999999999999999975  455566776664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.67  E-value=2.6e-16  Score=135.32  Aligned_cols=105  Identities=15%  Similarity=0.238  Sum_probs=82.8

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCC-CCeeeeEEEEEeccCC-CCEEEEEEEeC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCL-NPIWNQTFDFVVEDGL-HDMLIAEVWDH  520 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~-~~~L~i~V~d~  520 (573)
                      ..+.|+|.|++|+||++.+..+.+||||++++-.   ...++||+++++|. ||+|||+|.|.+.... +-.|.|+|||+
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            4588999999999999876667789999999842   23578999999995 6999999999997542 34789999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      +..++ ++||++.++.++. .+.+.++|....
T Consensus        92 ~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~  122 (135)
T cd08692          92 SSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI  122 (135)
T ss_pred             CCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence            87655 7999999999874 223346666543

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.67  E-value=4.5e-16  Score=138.11  Aligned_cols=107  Identities=25%  Similarity=0.396  Sum_probs=90.5

Q ss_pred             EEEEEEEeecCCCCCCC--------------CCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEE
Q 008214          450 LSVTVILAENLPASDLM--------------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLI  514 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~--------------~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~  514 (573)
                      |.|+|++|++|+.++..              +.+||||++.+++  .+.||++++++.||+|||+|.|.+..+ ..+.|.
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            78999999999998744              3689999999986  567999999999999999999997543 356899


Q ss_pred             EEEEeCCCCCC-ceeEEEEEEcceeeecCe-------EeEEEEcCCCCCeEE
Q 008214          515 AEVWDHDTFGK-DYMGRCILTLTRVILEGE-------YTDCFELDGTKSGKL  558 (573)
Q Consensus       515 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~-------~~~~~~L~~~~~G~i  558 (573)
                      |+|||++..+. ++||++.+++.++...+.       ...|++|.+.+.+..
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~  131 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS  131 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence            99999998854 799999999999877653       369999988766643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.67  E-value=4.9e-16  Score=133.50  Aligned_cols=103  Identities=25%  Similarity=0.425  Sum_probs=91.2

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d  341 (573)
                      |.|+|+|++|++|+..+..+.+||||++++.  +...++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d   77 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD   77 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            7899999999999999888999999999995  23568899999999999999999988754 46899999999999999


Q ss_pred             CceEEEEEEccccCCCceeEEEEEeee
Q 008214          342 ELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ++||++.+++.++..+ ..+.|+.+..
T Consensus        78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          78 RSLGSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence            9999999999999876 5678888864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.66  E-value=6.2e-16  Score=136.67  Aligned_cols=93  Identities=29%  Similarity=0.587  Sum_probs=85.2

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~  340 (573)
                      .|.|+|+|++|++|+..+. +.+||||+++++   .+.++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~   75 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK   75 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence            3899999999999998887 889999999997   6789999999999999999999999876 6789999999999999


Q ss_pred             CCceEEEEEEccccCCCc
Q 008214          341 SELIGCAQVRLCELEPGK  358 (573)
Q Consensus       341 d~~lG~~~i~l~~l~~~~  358 (573)
                      |++||.+.+++.++....
T Consensus        76 dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          76 DDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCEEEEEEEEHHHhhhhh
Confidence            999999999999986543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.66  E-value=5.8e-16  Score=130.16  Aligned_cols=93  Identities=24%  Similarity=0.378  Sum_probs=79.9

Q ss_pred             eEEEEEEEEeecCCCCCCC----CCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCC
Q 008214          448 GVLSVTVILAENLPASDLM----GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  522 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~  522 (573)
                      |+|.|+|++|++|+..+..    +.+||||++++++  +++||++++++.||+|||.|.|.+.+. ....|.|+|||++.
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~   78 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK   78 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence            6899999999999987532    3589999999975  678999999999999999999998754 33589999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecC
Q 008214          523 FGK-DYMGRCILTLTRVILEG  542 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~  542 (573)
                      .++ ++||++.++|+++..+.
T Consensus        79 ~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          79 FSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCcceEEEEEEHHHHHhhC
Confidence            765 69999999999987653

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.66  E-value=6.6e-16  Score=137.04  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=86.1

Q ss_pred             EEEEEEEEeeeccCCCCCC--------------CCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC-CCcE
Q 008214          263 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH  327 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~  327 (573)
                      .|.|+|++|++|+.+|..+              .+||||++.++   +++.+|++++++.||+|||+|.|.+..+ ..+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence            3789999999999987543              68999999997   5667999999999999999999997654 3568


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEccccCCCce-------eEEEEEee
Q 008214          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLV  367 (573)
Q Consensus       328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~  367 (573)
                      |.|+|||+|..++|++||.+.+++.++.....       ...|+.+.
T Consensus        78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly  124 (151)
T cd04018          78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY  124 (151)
T ss_pred             EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence            99999999998899999999999999865442       24677764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.66  E-value=9.5e-16  Score=164.64  Aligned_cols=130  Identities=22%  Similarity=0.512  Sum_probs=110.4

Q ss_pred             cceEEEEEEEEeeeccCCCC------------------------------------------CCCCCcEEEEEEecCCCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPEK  297 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~  297 (573)
                      -.|.|.++|.+|++|+++|.                                          .+++||||+|.++  +.+
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~r   89 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QAT   89 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccc
Confidence            35899999999999886331                                          2467999999996  244


Q ss_pred             eEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCc
Q 008214          298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK  377 (573)
Q Consensus       298 ~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~  377 (573)
                      ..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|+.++..+...+.|++|.+...  +..+
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~k  165 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPPK  165 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCCC
Confidence            679999999999999999999998764 48999999999986 5899999999999999999999999987653  4556


Q ss_pred             ceeEEEEEEEEeecCCCC
Q 008214          378 YRGQVHLELLYCPFGMEN  395 (573)
Q Consensus       378 ~~G~i~l~l~~~p~~~~~  395 (573)
                      ..|+|+++++|.|++...
T Consensus       166 ~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        166 AETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             CCcEEEEEEEEEEccccc
Confidence            789999999999987653

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.66  E-value=2.3e-16  Score=138.75  Aligned_cols=110  Identities=25%  Similarity=0.427  Sum_probs=93.2

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +....|.|.|+|++|++|+..+..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V   87 (133)
T cd08384           8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV   87 (133)
T ss_pred             EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence            345679999999999999999988999999999997532  3468999999999999999999998643  356899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ||++..+++++||++.+++..  .+.....|+.+.+
T Consensus        88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            999988889999999999985  3445678887754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.66  E-value=9.5e-16  Score=130.21  Aligned_cols=98  Identities=22%  Similarity=0.396  Sum_probs=85.3

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC----CcEEEEEEEeCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGI  338 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~----~~~l~i~v~d~~~~  338 (573)
                      .|+|+|++|++|.    .+.+||||+++++   +++++|++++++.||.|||+|.|.+..+.    ...|.|+|||++..
T Consensus         5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           5 QVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             EEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            5899999999998    5789999999998   56789999999999999999999986542    46899999999998


Q ss_pred             CCCCceEEEEEEccccCCC---ceeEEEEEee
Q 008214          339 QSSELIGCAQVRLCELEPG---KVKDVWLKLV  367 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~~---~~~~~w~~L~  367 (573)
                      ++|++||++.++|+++..+   .....|++|.
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            8899999999999999655   3467899884

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.66  E-value=1.5e-15  Score=131.75  Aligned_cols=106  Identities=34%  Similarity=0.580  Sum_probs=93.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCC-CCCCeeeeEEEEEeccC---CCCEEEEEEEeCCCC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTF  523 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~---~~~~L~i~V~d~~~~  523 (573)
                      |.|.|+|++|++|+..+..+.+||||++++++  ..++|+++++ +.||.|||+|.|.+..+   ....|.|+|||++..
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   78 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF   78 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC
Confidence            57999999999999988888999999999975  5678888774 89999999999999876   357899999999887


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcCCCCC
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKS  555 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~  555 (573)
                      +. ++||++.+++.++..++..+.|+.|...+.
T Consensus        79 ~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~  111 (124)
T cd04049          79 SDDDFIGEATIHLKGLFEEGVEPGTAELVPAKY  111 (124)
T ss_pred             CCCCeEEEEEEEhHHhhhCCCCcCceEeeccce
Confidence            55 699999999999998888899999988653

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.65  E-value=3.6e-15  Score=132.16  Aligned_cols=117  Identities=21%  Similarity=0.350  Sum_probs=94.6

Q ss_pred             EEEEEEeec--CCCCCCCCCCCcEEEEEE--c-CcceeEeecccCCCCCCeeeeEEEEEeccC--------CCCEEEEEE
Q 008214          451 SVTVILAEN--LPASDLMGKADPYVVLTM--K-KSETRNKTRVVNDCLNPIWNQTFDFVVEDG--------LHDMLIAEV  517 (573)
Q Consensus       451 ~V~v~~a~~--L~~~~~~~~~dpyv~v~l--~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--------~~~~L~i~V  517 (573)
                      .++|..|++  |+..+..+..||||++++  . ....+.||+++++|.||+|||+|.|.+...        ....|.++|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            345555555  777777888999999997  2 334689999999999999999999999643        145799999


Q ss_pred             EeCCCC--CCceeEEEEEEcceeeecCeEeEEEEcC-CC--CCeEEEEEEEEEec
Q 008214          518 WDHDTF--GKDYMGRCILTLTRVILEGEYTDCFELD-GT--KSGKLKLHLKWMPQ  567 (573)
Q Consensus       518 ~d~~~~--~~d~lG~~~i~l~~l~~~~~~~~~~~L~-~~--~~G~i~l~l~~~p~  567 (573)
                      ||++.+  ++++||++.++|+.+..+.....|++|. +.  -+|+|+++++.+..
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p  139 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP  139 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence            999875  3579999999999998887778899975 43  37999999988743

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.65  E-value=4.9e-16  Score=137.09  Aligned_cols=105  Identities=29%  Similarity=0.381  Sum_probs=87.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc---eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+..|.+||||++++....   .++||++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d   93 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence            46799999999999999988999999999985322   367899999999999999999998632  3457999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      ..++ ++||.+.+++..  ......+|+.|...
T Consensus        94 ~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~  124 (136)
T cd08404          94 RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP  124 (136)
T ss_pred             CCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence            8865 699999999998  34456888887544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=4.9e-17  Score=154.26  Aligned_cols=229  Identities=28%  Similarity=0.372  Sum_probs=172.5

Q ss_pred             CcccccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEE--EEecC-CCcE
Q 008214          253 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEF--IVEDE-STQH  327 (573)
Q Consensus       253 ~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f--~v~~~-~~~~  327 (573)
                      +..+|......+..++..|++|..++.++..|||++..+.+.-.  .+.+|++..+++||.|+|+-..  ...+. ....
T Consensus        84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~  163 (362)
T KOG1013|consen   84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV  163 (362)
T ss_pred             hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence            44556666778899999999999999999999999999985333  2578889999999999987443  33332 2346


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEccccCCCceeE--EEEEeeeccc--ccCCCcceeEEEEEEEEeecCCCCCccCCCCC
Q 008214          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD--VWLKLVKDLD--VQRDTKYRGQVHLELLYCPFGMENVFTNPFAP  403 (573)
Q Consensus       328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~--~w~~L~~~~~--~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~  403 (573)
                      +++.|.|.+.+..++++|+..+++..+.+.+...  .|+.-.-..+  .......+|++.+++.|-              
T Consensus       164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------  229 (362)
T KOG1013|consen  164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------  229 (362)
T ss_pred             hheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------
Confidence            7899999999999999999999999887655422  2222110100  011225667777776662              


Q ss_pred             CCChhhHHHHhccCcccccCCCCCcchhhhchhhhccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---c
Q 008214          404 NFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---S  480 (573)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~  480 (573)
                                                               ....-+.|++.+|..|...|.+|.+||||..++..   .
T Consensus       230 -----------------------------------------s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~  268 (362)
T KOG1013|consen  230 -----------------------------------------STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGK  268 (362)
T ss_pred             -----------------------------------------cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcch
Confidence                                                     23456889999999999999999999999999853   2


Q ss_pred             ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCCCC-CCceeEEEEEEcc
Q 008214          481 ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTF-GKDYMGRCILTLT  536 (573)
Q Consensus       481 ~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~~~-~~d~lG~~~i~l~  536 (573)
                      .-++||.+.++|.+|+||+.|.|.+..  .....+.|.|||.+.. +.|++|-+...+.
T Consensus       269 ~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  269 KFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             hhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence            347899999999999999999998873  3567899999999987 4588887665554

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.64  E-value=2.3e-15  Score=132.37  Aligned_cols=111  Identities=19%  Similarity=0.293  Sum_probs=91.7

Q ss_pred             cccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC---eEEeeeeCCCCCceeccEEEEEEec--CCCcEEEE
Q 008214          256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVV  330 (573)
Q Consensus       256 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i  330 (573)
                      .+....|.|.|+|++|+||+..+..|.+||||++++.+..++   ++||++++++.||+|||+|.|.+..  .....|.|
T Consensus         9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~   88 (138)
T cd08408           9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF   88 (138)
T ss_pred             EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence            345678999999999999999998899999999999864332   5789999999999999999999874  35568999


Q ss_pred             EEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      .|||++..+++++||++.+++..... ...++|..+.
T Consensus        89 ~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l  124 (138)
T cd08408          89 SVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMK  124 (138)
T ss_pred             EEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence            99999999999999999998874432 2235677664

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.64  E-value=7.5e-16  Score=132.50  Aligned_cols=113  Identities=10%  Similarity=0.210  Sum_probs=90.1

Q ss_pred             cccccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCC-CceeccEEEEEEecCC-CcEEE
Q 008214          254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLV  329 (573)
Q Consensus       254 ~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~-nP~w~e~f~f~v~~~~-~~~l~  329 (573)
                      +-.+.+..|+|+|+|++|+||++.+..+.+||||++++...+++  ++||++++++. ||+|||+|.|.+.... .-.|.
T Consensus         6 sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~   85 (135)
T cd08692           6 GTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFL   85 (135)
T ss_pred             EeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEE
Confidence            34566889999999999999998755667799999999754443  67899999995 6999999999997542 34688


Q ss_pred             EEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          330 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       330 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      ++|||++..+++++||++.+..... .+...++|....
T Consensus        86 v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~  122 (135)
T cd08692          86 IKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI  122 (135)
T ss_pred             EEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence            8999999888999999999998764 223356776653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.64  E-value=5.4e-16  Score=136.60  Aligned_cols=106  Identities=23%  Similarity=0.266  Sum_probs=85.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc---eeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+ .+.+||||++++....   .++||++++++.||+|||.|.|.+..  .....|.|+|||.+
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            478999999999999988 7889999999986321   36799999999999999999999863  34468999999998


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      ..++ ++||++.|+......+.+..+|..+-..
T Consensus        93 ~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~  125 (137)
T cd08409          93 GVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK  125 (137)
T ss_pred             CCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence            7665 6999999997655445555667665443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.64  E-value=3.4e-15  Score=131.93  Aligned_cols=91  Identities=40%  Similarity=0.672  Sum_probs=82.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  526 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d  526 (573)
                      |.|+|+|++|+||+..+. +.+||||++++++  ++++|++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ +
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~--~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd   77 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN--QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD   77 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC--EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            789999999999998887 8899999999976  788999999999999999999999876 7789999999998865 6


Q ss_pred             eeEEEEEEcceeeecC
Q 008214          527 YMGRCILTLTRVILEG  542 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~  542 (573)
                      +||++.+++.++....
T Consensus        78 ~iG~a~i~l~~l~~~~   93 (145)
T cd04038          78 SMGEAEIDLEPLVEAA   93 (145)
T ss_pred             EEEEEEEEHHHhhhhh
Confidence            9999999999987543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=1.8e-15  Score=132.74  Aligned_cols=98  Identities=27%  Similarity=0.380  Sum_probs=86.2

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC----CCeEEeeeeCCCCCceeccEEEEEEecC----CCcEEEE
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV  330 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~~~~~~~nP~w~e~f~f~v~~~----~~~~l~i  330 (573)
                      ...+.|+|+|++|++|+..+..+.+||||++++.+..    ...++|++++++.||+|||+|.|.+...    ....|.|
T Consensus        13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence            4568899999999999998888999999999997433    3578999999999999999999998753    3458999


Q ss_pred             EEEeCCCCCCCCceEEEEEEccccCC
Q 008214          331 RIYDDEGIQSSELIGCAQVRLCELEP  356 (573)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~i~l~~l~~  356 (573)
                      +|||++..++|++||++.++|+++..
T Consensus        93 ~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          93 TVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            99999999889999999999999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.63  E-value=6.8e-16  Score=136.16  Aligned_cols=108  Identities=23%  Similarity=0.370  Sum_probs=91.1

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEE
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~  333 (573)
                      ....+.|.|+|++|++|+..+..|.+||||++++.+.+.  .+++|++++++.||.|||+|.|.+...  ....|.|+||
T Consensus        11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~   90 (136)
T cd08404          11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL   90 (136)
T ss_pred             eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            356789999999999999999889999999999974332  257899999999999999999998642  3457899999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      |++..+++++||++.+++..  .+.....|+.+.
T Consensus        91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~  122 (136)
T cd08404          91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC  122 (136)
T ss_pred             ECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence            99999999999999999988  345567787774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.63  E-value=7.7e-16  Score=135.88  Aligned_cols=105  Identities=28%  Similarity=0.396  Sum_probs=85.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+..|.+||||++++..   ...+++|++++++.||.|||+|.|.+..  .....|.|+|||++
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~   93 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence            478999999999999988889999999999842   1246799999999999999999998762  23568999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      ..++ ++||++.+++.+.  +....+|+.+-..
T Consensus        94 ~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~  124 (136)
T cd08405          94 RLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK  124 (136)
T ss_pred             CCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence            8765 6999999999875  3334667666443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.63  E-value=1.8e-15  Score=128.32  Aligned_cols=101  Identities=25%  Similarity=0.482  Sum_probs=86.7

Q ss_pred             CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCC-C
Q 008214          279 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G  357 (573)
Q Consensus       279 ~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~-~  357 (573)
                      ..|.+||||+++++.  ...++|++++++.||+|||.|.|.+.+...+.|.|+|||++.. +|++||++.++|.++.. +
T Consensus         9 ~~G~~dPYv~v~v~~--~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052           9 KTGLLSPYAELYLNG--KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             cCCCCCceEEEEECC--EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            468899999999962  3467999999999999999999999877677899999999988 89999999999999854 3


Q ss_pred             ceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          358 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       358 ~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      .....|++|..        ...|+|++++.|.|
T Consensus        86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p  110 (111)
T cd04052          86 SVGQQWFPLSG--------NGQGRIRISALWKP  110 (111)
T ss_pred             hccceeEECCC--------CCCCEEEEEEEEec
Confidence            45679999842        45799999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.63  E-value=3.8e-15  Score=130.74  Aligned_cols=95  Identities=28%  Similarity=0.432  Sum_probs=82.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-----ceeEeecccCCCCCCeeeeEEEEEeccC----CCCEEEEEE
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEV  517 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V  517 (573)
                      .+.|+|+|++|++|+..+..+.+||||++++.+.     ..++||+++++|.||+|||+|.|.+...    ....|.|+|
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V   94 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV   94 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence            4689999999999999888899999999999632     3578999999999999999999998742    356899999


Q ss_pred             EeCCCCCC-ceeEEEEEEcceeeec
Q 008214          518 WDHDTFGK-DYMGRCILTLTRVILE  541 (573)
Q Consensus       518 ~d~~~~~~-d~lG~~~i~l~~l~~~  541 (573)
                      ||++..++ ++||++.++|+++..-
T Consensus        95 ~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          95 KDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EecCCCCCCcEeEEEEEeHHHCCcc
Confidence            99998874 7999999999998743

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.63  E-value=2e-15  Score=131.26  Aligned_cols=111  Identities=25%  Similarity=0.393  Sum_probs=93.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccCC----CCEEEEEEEeCCCC
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDTF  523 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~----~~~L~i~V~d~~~~  523 (573)
                      .|+|+|++|++|+..+..+.+||||++++++ ..+++|++.. ++.||.|||.|.|.+..+.    ...|.|+|||++..
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~   79 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS   79 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence            3789999999999988889999999999975 4567888875 5899999999999998653    67899999999885


Q ss_pred             CC-ceeEEEEEEcceeeecCe-----EeEEEEcCC---CCCeEEEE
Q 008214          524 GK-DYMGRCILTLTRVILEGE-----YTDCFELDG---TKSGKLKL  560 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~-----~~~~~~L~~---~~~G~i~l  560 (573)
                      +. ++||.+.+++.++..+..     ...||+|.+   ...|.|++
T Consensus        80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            54 699999999999987654     368999963   45788764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.63  E-value=8.5e-16  Score=179.82  Aligned_cols=119  Identities=27%  Similarity=0.570  Sum_probs=107.4

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCC-CCEEEEEEEeCCCC
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-HDMLIAEVWDHDTF  523 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~V~d~~~~  523 (573)
                      ...|.|+|+|++|.||.  +..|.+||||++++++ ..+.||++++++.||+|||.|+|.+.+|. ++.|+|+|||+|.+
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            44799999999999998  4468999999999985 34669999999999999999999998874 46799999999999


Q ss_pred             CCceeEEEEEEcceeeecCeEeEEEEcCC--CCCeE---EEEEEEEEe
Q 008214          524 GKDYMGRCILTLTRVILEGEYTDCFELDG--TKSGK---LKLHLKWMP  566 (573)
Q Consensus       524 ~~d~lG~~~i~l~~l~~~~~~~~~~~L~~--~~~G~---i~l~l~~~p  566 (573)
                      ++|.||.+.|+|.++..++.+..||+|.+  ++.|+   |+++++|++
T Consensus      2054 ~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2054 GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence            88999999999999999999999999986  67898   999999986

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.63  E-value=2.9e-15  Score=132.24  Aligned_cols=110  Identities=30%  Similarity=0.449  Sum_probs=91.1

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +.+..|.|.|+|++|++|+..+..|.+||||++++.+.+.  ..++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            4567899999999999999999889999999999974322  357899999999999999999998643  234799999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ||++.+++|++||++.+++...  +.....|+++..
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~  123 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA  123 (136)
T ss_pred             EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence            9999999999999999999763  444566776643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.63  E-value=6.4e-15  Score=129.22  Aligned_cols=125  Identities=18%  Similarity=0.328  Sum_probs=100.5

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      .+-...|.|.|++|++|+.++     +|||.+.++  +....||+++.++.||.|+|+|.|..... ...+.|.||+.+.
T Consensus         7 ~R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~   78 (146)
T cd04013           7 RRTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESD   78 (146)
T ss_pred             eEEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccC
Confidence            356678999999999998754     799999997  23446999999999999999999975533 4579999987653


Q ss_pred             CC----CCCceEEEEEEccccCCCceeEEEEEeeeccccc-----CCCcceeEEEEEEEEee
Q 008214          338 IQ----SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVHLELLYCP  390 (573)
Q Consensus       338 ~~----~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-----~~~~~~G~i~l~l~~~p  390 (573)
                      ..    ++++||.+.||+.++..+...+.||+|.......     ......+.|+++++|.+
T Consensus        79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~  140 (146)
T cd04013          79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS  140 (146)
T ss_pred             ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence            22    5799999999999999999999999998654321     01345689999999986

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.63  E-value=2.3e-15  Score=132.80  Aligned_cols=109  Identities=23%  Similarity=0.398  Sum_probs=90.4

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v  332 (573)
                      +.+..|.|.|+|++|++|+..+..|.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v   89 (136)
T cd08405          10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            345679999999999999998888999999999986422  246789999999999999999998763  2346899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      ||++..+++++||++.+++.+.  +...+.|+.+.
T Consensus        90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~  122 (136)
T cd08405          90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML  122 (136)
T ss_pred             EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence            9999998999999999999875  44455666664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.63  E-value=5.4e-16  Score=136.49  Aligned_cols=109  Identities=29%  Similarity=0.480  Sum_probs=90.3

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +....|.|+|+|++|++|++.+..|.+||||++++.+.+  ...++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v   88 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV   88 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            446789999999999999999989999999999996433  2467899999999999999999987543  334699999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      ||++..+++++||++.+++.  ..+.....|+.+.
T Consensus        89 ~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~  121 (134)
T cd08403          89 VDYDRVGHNELIGVCRVGPN--ADGQGREHWNEML  121 (134)
T ss_pred             EECCCCCCCceeEEEEECCC--CCCchHHHHHHHH
Confidence            99999999999999999987  3344456777764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.62  E-value=1.2e-15  Score=134.56  Aligned_cols=108  Identities=31%  Similarity=0.454  Sum_probs=91.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccCC--CCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+..+.+||||++++...   ..+++|++++++.||.|||+|.|.+....  ...|.|+|||.+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~   92 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence            4789999999999999888889999999999643   23679999999999999999999987542  578999999998


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCe
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG  556 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G  556 (573)
                      ..+. ++||.+.+++++  .+...++|++|...+..
T Consensus        93 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~  126 (134)
T cd00276          93 SVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRK  126 (134)
T ss_pred             CCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCC
Confidence            7655 699999999999  55566899998766543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.62  E-value=8.5e-15  Score=126.93  Aligned_cols=117  Identities=24%  Similarity=0.420  Sum_probs=93.5

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      .|.|+|++|+ |...+..+.+||||+++++.  ...++|++++++.||+|||+|.|.+.  ..+.|.|+|||++..+.|+
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~   77 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADV   77 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCc
Confidence            6899999998 55555578899999999972  23789999999999999999999986  3568999999999988999


Q ss_pred             ceEEEEEEccccCCCc---e--eEEEEEeeecccccCCCcceeEEEEEE
Q 008214          343 LIGCAQVRLCELEPGK---V--KDVWLKLVKDLDVQRDTKYRGQVHLEL  386 (573)
Q Consensus       343 ~lG~~~i~l~~l~~~~---~--~~~w~~L~~~~~~~~~~~~~G~i~l~l  386 (573)
                      +||++.++|.++....   .  ...|+.+.+..  .......|++++++
T Consensus        78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~  124 (125)
T cd04021          78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence            9999999999986432   2  23578876432  11346789988875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.62  E-value=1.2e-15  Score=134.74  Aligned_cols=106  Identities=30%  Similarity=0.471  Sum_probs=86.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|++|+..+..|.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~   93 (136)
T cd08402          14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence            4789999999999999998899999999999531   2467899999999999999999998632  2358999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      ..++ ++||++.+++...  +.+..+|+.+-..+
T Consensus        94 ~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~  125 (136)
T cd08402          94 RIGKNDPIGKVVLGCNAT--GAELRHWSDMLASP  125 (136)
T ss_pred             CCCCCceeEEEEECCccC--ChHHHHHHHHHhCC
Confidence            8866 6999999999863  34456777765543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.62  E-value=5.8e-15  Score=126.38  Aligned_cols=109  Identities=38%  Similarity=0.608  Sum_probs=94.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-cee
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM  528 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l  528 (573)
                      |+|+|++|++|+..+..+.+||||++.+++ ...++|+++.++.||.|||+|.|.+.......+.|+|||++..+. ++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence            578999999999988888999999999965 456899999999999999999999987667899999999988765 699


Q ss_pred             EEEEEEcceeeecCeEeEEEEcCCC---CCeEEE
Q 008214          529 GRCILTLTRVILEGEYTDCFELDGT---KSGKLK  559 (573)
Q Consensus       529 G~~~i~l~~l~~~~~~~~~~~L~~~---~~G~i~  559 (573)
                      |++.+++.++..+.....|++|.+.   ..|.+.
T Consensus        80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~  113 (115)
T cd04040          80 GSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF  113 (115)
T ss_pred             EEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence            9999999999888788999999754   345554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.62  E-value=5.2e-15  Score=127.16  Aligned_cols=109  Identities=24%  Similarity=0.430  Sum_probs=93.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  526 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d  526 (573)
                      |.|.|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|.|.+..+ .+.|.|+|||++..++ +
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~   78 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDR   78 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            67999999999999998889999999999964 3678999999999999999999998764 5789999999998866 5


Q ss_pred             eeEEEEEEcceeeecCeEeEEEEcCCCCCeEEE
Q 008214          527 YMGRCILTLTRVILEGEYTDCFELDGTKSGKLK  559 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~  559 (573)
                      +||++.+++.++... ....||.|.+...+.+.
T Consensus        79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK  110 (120)
T ss_pred             eeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence            999999999999876 45888888766555443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.62  E-value=3.9e-15  Score=126.41  Aligned_cols=100  Identities=21%  Similarity=0.272  Sum_probs=86.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC----CCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~d~~~  522 (573)
                      ...|+|+|++|++|+    .+.+||||++++++  ++++|++++++.||.|||.|.|.+..+    .+..|.|+|||++.
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~   76 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS   76 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence            368999999999998    47899999999986  677999999999999999999998643    24689999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecC---eEeEEEEcCC
Q 008214          523 FGK-DYMGRCILTLTRVILEG---EYTDCFELDG  552 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~---~~~~~~~L~~  552 (573)
                      .+. ++||.+.++|+++..+.   ....||+|.+
T Consensus        77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            765 79999999999997663   3589999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.62  E-value=1.8e-15  Score=130.90  Aligned_cols=93  Identities=28%  Similarity=0.380  Sum_probs=81.6

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      .|+|+|++|++|++.+..|.+||||++++++. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence            37899999999999998899999999999732 23367888889999999999999987777789999999999988999


Q ss_pred             ceEEEEEEccccCC
Q 008214          343 LIGCAQVRLCELEP  356 (573)
Q Consensus       343 ~lG~~~i~l~~l~~  356 (573)
                      +||++.+++++...
T Consensus        80 ~iG~~~i~l~~~~~   93 (124)
T cd04037          80 LIGETVIDLEDRFF   93 (124)
T ss_pred             eeEEEEEeeccccc
Confidence            99999999987653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.61  E-value=6.4e-15  Score=129.56  Aligned_cols=111  Identities=27%  Similarity=0.465  Sum_probs=88.3

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +.+..|.|.|+|++|++|+..+..|.+||||++++.+..  .++++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V   88 (135)
T cd08410           9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV   88 (135)
T ss_pred             ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence            345679999999999999999988999999999986422  2457899999999999999999998532  334799999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ||++..+++++||++.+....... ...++|..+..
T Consensus        89 ~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~  123 (135)
T cd08410          89 YGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN  123 (135)
T ss_pred             EeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence            999998999999998866533322 23466777653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.61  E-value=1.2e-14  Score=127.61  Aligned_cols=118  Identities=14%  Similarity=0.247  Sum_probs=97.2

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC-CC-
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-TF-  523 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~-~~-  523 (573)
                      ....|.|.|.+|++|+.++     +|||++.+++ ....||+++.++.||.|+|.|.|.+..+ -..|.|.|+..+ .. 
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~   81 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDK-TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC-----CceEEEEECC-EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence            3568999999999998854     7999999986 4557999999999999999999987643 467999997544 22 


Q ss_pred             ---CCceeEEEEEEcceeeecCeEeEEEEcCCC-------------CCeEEEEEEEEEecCCC
Q 008214          524 ---GKDYMGRCILTLTRVILEGEYTDCFELDGT-------------KSGKLKLHLKWMPQPIY  570 (573)
Q Consensus       524 ---~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-------------~~G~i~l~l~~~p~~~~  570 (573)
                         ++++||.+.|++.++..+...++||+|.+.             +.+.|+++++|.+.-++
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~l  144 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVL  144 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeC
Confidence               236999999999999988888999999532             23799999999987664

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.61  E-value=5.2e-16  Score=151.72  Aligned_cols=110  Identities=35%  Similarity=0.603  Sum_probs=94.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEc---CcceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~  522 (573)
                      ...|+|+|.+|+||.++|.+|.+||||++.+-   ....++||++++.++||+|||+|+|.+... .+..|.|+|||+|.
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            36799999999999999999999999999993   234688999999999999999999998744 45689999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCeE
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGK  557 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~  557 (573)
                      .++ |++|..++.++++..++ .+.||.|-.+..|+
T Consensus       259 TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE  293 (683)
T ss_pred             cccccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence            876 89999999999987553 48899986655454

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.61  E-value=6.2e-15  Score=129.24  Aligned_cols=107  Identities=34%  Similarity=0.567  Sum_probs=93.3

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC-CCcEEEEEEEeCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI  338 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~d~~~~  338 (573)
                      |.|+|+|++|++|+..+..+.+||||++++.+.+  ...++|++++++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            8899999999999998888899999999997422  3578999999999999999999998754 346899999999988


Q ss_pred             CCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      +++++||++.+++.++... ..+.|++|...
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~  122 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ  122 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence            8999999999999999755 67899999643

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.61  E-value=6.1e-15  Score=127.12  Aligned_cols=100  Identities=26%  Similarity=0.436  Sum_probs=86.8

Q ss_pred             EEEeeeccCCCCCCCCCcEEEEEEecCC----CCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC----CC
Q 008214          268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ  339 (573)
Q Consensus       268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~----~~  339 (573)
                      .++|++|++.+..|.+||||++++.+..    ...++|++++++.||+|||+|.|.+.....+.|.|+|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            3789999999988999999999998532    125899999999999999999998765556789999999997    78


Q ss_pred             CCCceEEEEEEccccCCCceeEEEEEee
Q 008214          340 SSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       340 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      ++++||++.+++.++..+.....|+.|.
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            9999999999999998877778888883

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.61  E-value=2.1e-15  Score=132.87  Aligned_cols=111  Identities=23%  Similarity=0.386  Sum_probs=92.7

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v  332 (573)
                      +.+..+.|.|+|++|+||+..+ .+.+||||++++.+...  .+++|++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V   88 (137)
T cd08409          10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV   88 (137)
T ss_pred             ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence            3456799999999999999888 78899999999986433  36789999999999999999999863  3446899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ||++..+++++||++.++......+...++|..+..
T Consensus        89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            999998999999999999766666666677877653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.61  E-value=2.2e-15  Score=132.49  Aligned_cols=106  Identities=29%  Similarity=0.426  Sum_probs=88.1

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~  520 (573)
                      ..+.|.|+|++|+||+..+..|.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~   90 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK   90 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence            35899999999999999998899999999999532   3467999999999999999999998643  346899999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      +..++ ++||.+.+++..  .+....+||.+...
T Consensus        91 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~  122 (133)
T cd08384          91 DIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN  122 (133)
T ss_pred             CCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence            87765 799999999986  33445788887543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=8.7e-15  Score=126.83  Aligned_cols=107  Identities=25%  Similarity=0.423  Sum_probs=90.1

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC---CCcEEEEEE
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRI  332 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~---~~~~l~i~v  332 (573)
                      ....+.|+|+|++|++|++.+..+.+||||++++.+..  ...++|++++++.||+|||+|.|.....   ....+.|+|
T Consensus        11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v   90 (123)
T cd04035          11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV   90 (123)
T ss_pred             eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence            34568999999999999998888899999999986432  3478999999999999999999863322   356899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEE
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLK  365 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~  365 (573)
                      ||++.. ++++||++.++++++..+...+.|+.
T Consensus        91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             EEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            999988 89999999999999988877766654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.60  E-value=4.8e-15  Score=130.39  Aligned_cols=104  Identities=24%  Similarity=0.421  Sum_probs=90.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCc--ceeEeecccCCCCCCeeeeEEEEEeccC---------------CCCE
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKS--ETRNKTRVVNDCLNPIWNQTFDFVVEDG---------------LHDM  512 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~  512 (573)
                      |+|+|++|++|+.. ..+.+||||+++++..  ..+++|++++++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999988 7789999999999731  3678999999999999999999998765               4568


Q ss_pred             EEEEEEeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          513 LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       513 L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      |.|+|||++..++ ++||++.+++.++...+....||+|...+
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            9999999998754 79999999999998777779999997653

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.60  E-value=2.4e-15  Score=132.31  Aligned_cols=106  Identities=26%  Similarity=0.327  Sum_probs=86.1

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-c---eeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEe
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-E---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD  519 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~---~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d  519 (573)
                      ..+.|.|+|++|+||+..+..|.+||||++++... .   .++||++++++.||+|||+|.|.+..  .....|.|+|||
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~   92 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN   92 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence            35789999999999999988899999999999531 1   35799999999999999999999873  355699999999


Q ss_pred             CCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          520 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      .+..++ ++||++.+++...- ..+..+|+.+..
T Consensus        93 ~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~  125 (138)
T cd08408          93 KRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKE  125 (138)
T ss_pred             CCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHh
Confidence            987765 69999999987542 223356777643

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.60  E-value=9.8e-15  Score=128.36  Aligned_cols=106  Identities=23%  Similarity=0.394  Sum_probs=84.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|++|+..+..|.+||||++++...   ..+++|+++++|.||.|||+|.|.+..  .....|.|+|||++
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d   92 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN   92 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            4789999999999999998899999999998432   246799999999999999999999853  23447999999998


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      ..++ ++||++.|+..... .....+|+.|...
T Consensus        93 ~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~  124 (135)
T cd08410          93 VKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS  124 (135)
T ss_pred             CCCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence            8765 69999987764432 2234677776544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=3.8e-16  Score=152.67  Aligned_cols=109  Identities=32%  Similarity=0.574  Sum_probs=95.2

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC-CCcEEEEEEEeCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~d~~  336 (573)
                      ....|+|+|.+|+||.++|.+|.+||||++.+-|.++  .+++|++++.++||+|||+|.|.+... ....|.++|||+|
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            3567899999999999999999999999999976433  368899999999999999999998754 3568999999999


Q ss_pred             CCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      +.++++++|..++.+++|...+ .+.|++|...
T Consensus       258 rTsRNDFMGslSFgisEl~K~p-~~GWyKlLsq  289 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQ  289 (683)
T ss_pred             ccccccccceecccHHHHhhcc-hhhHHHHhhh
Confidence            9999999999999999997654 6789998653

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.60  E-value=4.4e-15  Score=128.53  Aligned_cols=118  Identities=24%  Similarity=0.413  Sum_probs=90.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  527 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  527 (573)
                      +|+|+|++|++|+..+..|.+||||++++++.....||.+++++.||.|||+|.|.+..+..+.|.|+|||++..++ ++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            37899999999999998899999999999864445688888999999999999999877777899999999998755 79


Q ss_pred             eEEEEEEcceeeecCeEeEEEEcCC--CCCeEEEEEEEEEec
Q 008214          528 MGRCILTLTRVILEGEYTDCFELDG--TKSGKLKLHLKWMPQ  567 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~~~~~~~L~~--~~~G~i~l~l~~~p~  567 (573)
                      ||++.+++.+.... ...+++.+..  ...|.++..-.+.|.
T Consensus        81 iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (124)
T cd04037          81 IGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSLKPS  121 (124)
T ss_pred             eEEEEEeecccccc-hHHHhccCCCcccccCceecCcccCcc
Confidence            99999999987542 1112222221  145666555444443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.60  E-value=9.1e-15  Score=157.17  Aligned_cols=124  Identities=23%  Similarity=0.487  Sum_probs=105.9

Q ss_pred             ceeeEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEEcCcce
Q 008214          445 IIRGVLSVTVILAENLPASDL------------------------------------------MGKADPYVVLTMKKSET  482 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~------------------------------------------~~~~dpyv~v~l~~~~~  482 (573)
                      ..-|.|.++|++|++|++++.                                          .+.+||||++.+++ .+
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-~r   89 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-AT   89 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-cc
Confidence            456889999999999985221                                          23679999999975 45


Q ss_pred             eEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC------CCe
Q 008214          483 RNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSG  556 (573)
Q Consensus       483 ~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G  556 (573)
                      +.||++++++.||+|||+|.|.|.++ ...|.|+|+|++.+++++||++.|++.++..+...+.|++|.+.      +.|
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~  168 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET  168 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence            67999999999999999999999985 45899999999999889999999999999998888999999542      368


Q ss_pred             EEEEEEEEEecCCC
Q 008214          557 KLKLHLKWMPQPIY  570 (573)
Q Consensus       557 ~i~l~l~~~p~~~~  570 (573)
                      +|+++++|.|....
T Consensus       169 kl~v~lqf~pv~~~  182 (868)
T PLN03008        169 AIFIDMKFTPFDQI  182 (868)
T ss_pred             EEEEEEEEEEcccc
Confidence            99999999997653

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=1.8e-14  Score=124.79  Aligned_cols=102  Identities=28%  Similarity=0.398  Sum_probs=83.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEecc---CCCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~V~d~  520 (573)
                      .+.|+|+|++|++|+..+..+.+||||++++..   ...+++|++++++.||.|||.|.|....   ..+..|.|+|||+
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~   93 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE   93 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence            478999999999999988888999999999842   2347899999999999999999996322   2356899999999


Q ss_pred             CCCCCceeEEEEEEcceeeecCeEeEEE
Q 008214          521 DTFGKDYMGRCILTLTRVILEGEYTDCF  548 (573)
Q Consensus       521 ~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (573)
                      +..++++||.+.++++++..++...-|+
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~  121 (123)
T cd04035          94 DRFGNDFLGETRIPLKKLKPNQTKQFNI  121 (123)
T ss_pred             CCcCCeeEEEEEEEcccCCCCcceEeec
Confidence            8775579999999999998665444443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.59  E-value=2.4e-14  Score=125.10  Aligned_cols=111  Identities=24%  Similarity=0.462  Sum_probs=90.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-----------ceeEeecccCCCCCCee-eeEEEEEeccCCCCEEEEE
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-----------ETRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE  516 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-----------~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i~  516 (573)
                      ...|++++|+||+ .+..|.+||||++.+...           .+++||++++++.||+| ||.|.|.+.  .++.|.|+
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            4678999999998 677899999999999532           23789999999999999 999999986  35789999


Q ss_pred             EEeCCCCC----CceeEEEEEEcceeeecC---eEeEEEEcCCC-----CCeEEEEEE
Q 008214          517 VWDHDTFG----KDYMGRCILTLTRVILEG---EYTDCFELDGT-----KSGKLKLHL  562 (573)
Q Consensus       517 V~d~~~~~----~d~lG~~~i~l~~l~~~~---~~~~~~~L~~~-----~~G~i~l~l  562 (573)
                      |||++..+    +++||++.++++++....   ....||+|...     -+|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            99976533    479999999999998663   35789999753     267777765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.59  E-value=4.6e-15  Score=130.53  Aligned_cols=104  Identities=31%  Similarity=0.412  Sum_probs=84.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|+|+|++|++|+..+..|.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~   92 (134)
T cd08403          13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence            4789999999999999998999999999998531   2467999999999999999999988632  3347999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      ..+. ++||.+.+++..  .+....+|+.+..
T Consensus        93 ~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~  122 (134)
T cd08403          93 RVGHNELIGVCRVGPNA--DGQGREHWNEMLA  122 (134)
T ss_pred             CCCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence            8875 799999999873  2333456776643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=2e-14  Score=123.42  Aligned_cols=108  Identities=24%  Similarity=0.424  Sum_probs=85.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCC--CCEEEEEEEeCCCCCC-c
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-D  526 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~~~~~~-d  526 (573)
                      |.|+|++|++|+..   +.+||||++++++ ...++|+++++ .||.|||+|.|.+....  ...|.|.+||.+..++ .
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            78999999999976   7899999999975 34579999988 99999999999987532  3478888898876544 3


Q ss_pred             eeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214          527 YMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  564 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~  564 (573)
                      .+|.+.|.  .+..++..++||+|.+.     ..|+|+++++|
T Consensus        77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            66665554  44446667899999764     37999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=2.3e-14  Score=123.09  Aligned_cols=114  Identities=31%  Similarity=0.512  Sum_probs=89.3

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC--CcEEEEEEEeCCCCCCC
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~--~~~l~i~v~d~~~~~~d  341 (573)
                      |+|+|++|++|+..   +.+||||+++++.  .+.++|+++++ .||.|||+|.|.+....  ...|.+.+||.+...++
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~--~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC--EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence            78999999999876   7899999999972  34578999988 99999999999987542  34678888988766556


Q ss_pred             CceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      ..+|.  +++..+..+...+.|++|.+..   ......|+|++++.|
T Consensus        76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~  117 (117)
T cd08383          76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY  117 (117)
T ss_pred             eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence            55665  5566666677789999997542   245678999999875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.58  E-value=5.2e-14  Score=122.94  Aligned_cols=119  Identities=25%  Similarity=0.404  Sum_probs=96.5

Q ss_pred             EEEEEEEEeeeccCCC--CCCCCCcEEEEEEecCC---CCeEEeeeeCCCC-CceeccEEEEEEecCCCcEEEEEEEeCC
Q 008214          263 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~~T~~~~~~~-nP~w~e~f~f~v~~~~~~~l~i~v~d~~  336 (573)
                      .|+|+|++|++|+..+  ..+.+||||++++...+   ...++|+++.++. ||.|||+|.|.+..+....|.++|||.+
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  57889999999996432   4568899887765 9999999999998766668999999999


Q ss_pred             CCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      .. ++++||.+.++++++..+.   .|+.|....   ......|.|.+.++.
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~---~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK---GEPLELSTLFVHIDI  127 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC---CCCCcceeEEEEEEE
Confidence            87 8999999999999996543   577775432   123566888888764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.58  E-value=1.2e-14  Score=125.05  Aligned_cols=91  Identities=32%  Similarity=0.442  Sum_probs=79.2

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEecc-CCCCEEEEEEEeCCCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFG  524 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~L~i~V~d~~~~~  524 (573)
                      ..+.|+|+|++|++|+. +..+.+||||++++++  .++||++++++.||+|||+|.|.... .....|.|+|||++..+
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            45899999999999985 6678899999999976  58899999999999999999997533 35679999999999885


Q ss_pred             C-ceeEEEEEEcceee
Q 008214          525 K-DYMGRCILTLTRVI  539 (573)
Q Consensus       525 ~-d~lG~~~i~l~~l~  539 (573)
                      + ++||++.++|....
T Consensus       103 ~dd~IG~~~i~l~~~~  118 (127)
T cd04032         103 DDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCeeEEEEEEecCCc
Confidence            5 79999999999765

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.57  E-value=2.9e-15  Score=132.06  Aligned_cols=109  Identities=28%  Similarity=0.430  Sum_probs=93.4

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecCC--CcEEEEEEEe
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD  334 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~~--~~~l~i~v~d  334 (573)
                      +..|.|.|+|++|++|+..+..+.+||||++++.+...  ..++|++++++.||.|||+|.|.+....  ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            45689999999999999988888999999999975432  3578999999999999999999987543  5789999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      .+..+++++||.+.+++.+  .+...+.|+.|...
T Consensus        91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  123 (134)
T cd00276          91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS  123 (134)
T ss_pred             cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence            9988899999999999999  56667889888643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.57  E-value=1.8e-14  Score=120.41  Aligned_cols=82  Identities=28%  Similarity=0.505  Sum_probs=70.6

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeC------
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------  335 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~------  335 (573)
                      |.|+|.+|++|+     +.+||||++++.+.+  ...++|+++++|+||+|||+|.|.+.  ..+.|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence            579999999996     569999999997543  35799999999999999999999986  367999999998      


Q ss_pred             -CCCCCCCceEEEEEEcc
Q 008214          336 -EGIQSSELIGCAQVRLC  352 (573)
Q Consensus       336 -~~~~~d~~lG~~~i~l~  352 (573)
                       |..+.|+++|.+.+.|+
T Consensus        74 ~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccccCcccEEEEEEEEEC
Confidence             45678999998888875

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.55  E-value=3.6e-14  Score=122.30  Aligned_cols=100  Identities=28%  Similarity=0.392  Sum_probs=85.7

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEEcCcc-----eeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCC----C
Q 008214          453 TVILAENLPASDLMGKADPYVVLTMKKSE-----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT----F  523 (573)
Q Consensus       453 ~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~----~  523 (573)
                      ..++|++|+..+..|.+||||++++.+..     ..++|++++++.||+|||+|.|.+.....+.|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            35889999999988999999999997532     35899999999999999999998765556789999999986    5


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      ++ ++||++.++++++..+.....|++|.+
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            44 799999999999998877788999943

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.55  E-value=8.6e-14  Score=120.63  Aligned_cols=111  Identities=30%  Similarity=0.463  Sum_probs=90.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  526 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d  526 (573)
                      ..|.|+|.+|+ |...+..+.+||||++++++. ..++|++++++.||.|||.|.|.+..  .+.|.|+|||++..+. +
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~-~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~   77 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ-PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADV   77 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc-ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCc
Confidence            36899999998 555555788999999999752 47899999999999999999999863  5789999999998755 6


Q ss_pred             eeEEEEEEcceeeecCe-----EeEEEEcCC------CCCeEEEEEE
Q 008214          527 YMGRCILTLTRVILEGE-----YTDCFELDG------TKSGKLKLHL  562 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~~~-----~~~~~~L~~------~~~G~i~l~l  562 (573)
                      +||++.++|.++.....     ...|++|..      ...|+|.+++
T Consensus        78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999999886532     346888842      2378888875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.53  E-value=1.6e-13  Score=119.81  Aligned_cols=113  Identities=27%  Similarity=0.434  Sum_probs=93.1

Q ss_pred             EEEEEEEEeecCCCCC--CCCCCCcEEEEEEcC----cceeEeecccCCCC-CCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214          449 VLSVTVILAENLPASD--LMGKADPYVVLTMKK----SETRNKTRVVNDCL-NPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~--~~~~~dpyv~v~l~~----~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~~~~L~i~V~d~~  521 (573)
                      .|+|+|++|+||+..+  ..+.+||||++++.+    ...+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  578899999999953    23568999987776 9999999999998766678999999998


Q ss_pred             CCCCceeEEEEEEcceeeecCeEeEEEEcCC-----CCCeEEEEEEEE
Q 008214          522 TFGKDYMGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKW  564 (573)
Q Consensus       522 ~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~-----~~~G~i~l~l~~  564 (573)
                      ..++++||++.++++++..+   ..|++|.+     ...|.|.+++++
T Consensus        83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            87557999999999998433   46788853     246888888875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.3e-13  Score=143.00  Aligned_cols=123  Identities=36%  Similarity=0.523  Sum_probs=105.4

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDT  522 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~~  522 (573)
                      ....|.|+|.+|++|+..+..|.+||||++++.. ...+.+|++.++|+||.|||+|.|.|..  .....|.++|||.|.
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            3578999999999999999777899999999964 3468899999999999999999999752  356799999999999


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEecC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQP  568 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~~  568 (573)
                      +++ +++|.+.++|..+........|.+|...      ..|+|.+.++|.|..
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~  297 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTA  297 (421)
T ss_pred             cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCC
Confidence            977 7999999999988776667889998542      247999999999873

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.52  E-value=2.2e-13  Score=113.96  Aligned_cols=105  Identities=24%  Similarity=0.380  Sum_probs=79.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC-----
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-----  521 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~-----  521 (573)
                      |.|+|++|+||+     +.+||||+++++..   ..+.||+++++|.||+|||+|+|.+..  ...|.+.|||++     
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence            579999999995     45899999998642   357899999999999999999999973  679999999983     


Q ss_pred             --CCCC-ceeEEEEEEcc--eeeecCeEeEEEEcCCCCCeEEEEEEEE
Q 008214          522 --TFGK-DYMGRCILTLT--RVILEGEYTDCFELDGTKSGKLKLHLKW  564 (573)
Q Consensus       522 --~~~~-d~lG~~~i~l~--~l~~~~~~~~~~~L~~~~~G~i~l~l~~  564 (573)
                        ..+. +.+|++.+.|+  .+...+..+..+.|.+   =+|.++++|
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~~  118 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIKF  118 (118)
T ss_pred             ccccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence              3344 68977777664  4444455566677766   245555554

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.51  E-value=4.8e-14  Score=165.39  Aligned_cols=121  Identities=14%  Similarity=0.294  Sum_probs=103.8

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC-CcEEEEEEEeCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG  337 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~-~~~l~i~v~d~~~  337 (573)
                      .-.|.|+|+|++|+||.  +..|.+||||++.+++  +++.||++++++.||+|||+|+|.+.++. ++.+.++|||+|.
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence            35799999999999998  4468999999999983  33678999999999999999999998875 4679999999999


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeE---EEEEEEEee
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VHLELLYCP  390 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~---i~l~l~~~p  390 (573)
                      ++ ++.+|.++|++.++..++....||+|.+      +++..|+   |++++.|.+
T Consensus      2053 f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2053 FG-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             cC-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence            85 5599999999999999999999999963      3345666   999999853

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.51  E-value=1.3e-13  Score=117.01  Aligned_cols=90  Identities=27%  Similarity=0.459  Sum_probs=76.5

Q ss_pred             EEEeeeccCCCCCCCCCcEEEEEEecCC---CCeEEeeeeCCCCCceeccEEEEEEecCC----CcEEEEEEEeCCCCCC
Q 008214          268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGIQS  340 (573)
Q Consensus       268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~~~~~~~nP~w~e~f~f~v~~~~----~~~l~i~v~d~~~~~~  340 (573)
                      .++|++|+..|..|.+||||++++.+..   ...++|++++++.||+|| +|.|.+.+..    .+.|.|+|||++..++
T Consensus         6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~   84 (110)
T cd04047           6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK   84 (110)
T ss_pred             EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence            4689999999999999999999987432   235899999999999999 6888765432    5689999999999999


Q ss_pred             CCceEEEEEEccccCCCc
Q 008214          341 SELIGCAQVRLCELEPGK  358 (573)
Q Consensus       341 d~~lG~~~i~l~~l~~~~  358 (573)
                      |++||++.++++++..+.
T Consensus        85 d~~iG~~~~~l~~l~~~~  102 (110)
T cd04047          85 HDLIGEFETTLDELLKSS  102 (110)
T ss_pred             CcEEEEEEEEHHHHhcCC
Confidence            999999999999997544

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.46  E-value=3.7e-13  Score=108.13  Aligned_cols=85  Identities=35%  Similarity=0.596  Sum_probs=76.6

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~  343 (573)
                      |+|+|++|++|+..+..+..|||+++++.......++|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998888899999999998544466999999999999999999999887777789999999999888999


Q ss_pred             eEEEE
Q 008214          344 IGCAQ  348 (573)
Q Consensus       344 lG~~~  348 (573)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.41  E-value=1.7e-12  Score=110.08  Aligned_cols=88  Identities=26%  Similarity=0.498  Sum_probs=74.2

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEEcCc----ceeEeecccCCCCCCeeeeEEEEEeccC----CCCEEEEEEEeCCCC
Q 008214          452 VTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTF  523 (573)
Q Consensus       452 V~v~~a~~L~~~~~~~~~dpyv~v~l~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~d~~~~  523 (573)
                      +..++|++|+..+..|.+||||++++.+.    ...++|++++++.||+|| .|.|.+...    ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            34679999999999999999999998643    246899999999999999 688876532    256899999999988


Q ss_pred             CC-ceeEEEEEEcceeee
Q 008214          524 GK-DYMGRCILTLTRVIL  540 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~  540 (573)
                      ++ ++||++.++++++..
T Consensus        83 ~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          83 GKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCcEEEEEEEEHHHHhc
Confidence            65 699999999999973

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.38  E-value=4e-12  Score=102.06  Aligned_cols=83  Identities=46%  Similarity=0.802  Sum_probs=74.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc-eeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSE-TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  527 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  527 (573)
                      |+|+|++|+||+..+..+.+|||+++.+++.. ..++|++++++.+|.|+|+|.|.+..+..+.|.|+|||++..+. ++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998888899999999997633 46899999999999999999999887777789999999999875 69


Q ss_pred             eEEEE
Q 008214          528 MGRCI  532 (573)
Q Consensus       528 lG~~~  532 (573)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=9.7e-13  Score=134.26  Aligned_cols=114  Identities=32%  Similarity=0.656  Sum_probs=97.2

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC-
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-  523 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~-  523 (573)
                      ..++.++++|.+|.+|..+|..|++||||.+.++.  .+.+|+++...+||+|||.|.|.+.+ ..+.|.+.|||++.. 
T Consensus       292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~k--tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl  368 (1283)
T KOG1011|consen  292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK--TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL  368 (1283)
T ss_pred             ccceeeEEeeeecccceecccCCCCCCcEEEeecc--cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence            45789999999999999999999999999999986  78899999999999999999999997 478899999998742 


Q ss_pred             -----------CCceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEE
Q 008214          524 -----------GKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLK  563 (573)
Q Consensus       524 -----------~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~  563 (573)
                                 ++||||+..|.+..+  .++++-||+|+..     -+|.|++.+.
T Consensus       369 ksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhis  422 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHIS  422 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEE
Confidence                       357999999988875  4678999999753     3676666443

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=1.8e-12  Score=132.31  Aligned_cols=121  Identities=31%  Similarity=0.592  Sum_probs=101.8

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC-
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI-  338 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~-  338 (573)
                      =...++++|+.|.+|..+|..|++||||.+.++   +.+.+|+++..++||+|||.|.|..++. ++.+.++|||.|.. 
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dl  368 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDL  368 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccH
Confidence            357899999999999999999999999999997   6778999999999999999999999964 67999999998842 


Q ss_pred             ----------CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          339 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       339 ----------~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                                ..|+|+|+..|.+..|..  ..+.|+.|.+...   +...+|.|++.+...
T Consensus       369 ksklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlhisve  424 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEEEEEE
Confidence                      468999999999987754  4679999976543   456778777666554

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.30  E-value=1.5e-11  Score=105.87  Aligned_cols=95  Identities=21%  Similarity=0.357  Sum_probs=80.1

Q ss_pred             EEEEEEEeeeccCCC--CCC--CCCcEEEEEEecCCCCeEEeeeeCCCCC--ceeccEEEEEEecC--------------
Q 008214          264 LEVKLVQAKGLTNKD--LIG--KSDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE--------------  323 (573)
Q Consensus       264 L~V~v~~a~~L~~~d--~~g--~~dpyv~v~~~~~~~~~~~T~~~~~~~n--P~w~e~f~f~v~~~--------------  323 (573)
                      |+|.|.+|++++..+  ..|  .+||||+..+.+....+++|.+.++++|  |.||+.|.|.+..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            789999999966433  356  4999999999865566789999999999  99999999887641              


Q ss_pred             ---------CCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCc
Q 008214          324 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK  358 (573)
Q Consensus       324 ---------~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~  358 (573)
                               ....|.++|||.|.+++|++||.++++|..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     24579999999999999999999999999887654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.28  E-value=3.8e-11  Score=99.33  Aligned_cols=96  Identities=38%  Similarity=0.655  Sum_probs=82.2

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~  343 (573)
                      |.|+|++|++|......+..+|||++++.+.+...++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            67999999999987755678999999998322257899999999999999999999987657899999999998777999


Q ss_pred             eEEEEEEccccCCCce
Q 008214          344 IGCAQVRLCELEPGKV  359 (573)
Q Consensus       344 lG~~~i~l~~l~~~~~  359 (573)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999998876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.26  E-value=4.3e-11  Score=98.76  Aligned_cols=101  Identities=39%  Similarity=0.725  Sum_probs=86.4

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~  343 (573)
                      |.|+|++|++|......+..+|||.+.+..  ...++|.++.++.||.|++.|.|.+.......+.++|||.+..+.+++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   78 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF   78 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence            468999999998766667899999999973  367899999999999999999999986456789999999998877899


Q ss_pred             eEEEEEEccccC-CCceeEEEEEe
Q 008214          344 IGCAQVRLCELE-PGKVKDVWLKL  366 (573)
Q Consensus       344 lG~~~i~l~~l~-~~~~~~~w~~L  366 (573)
                      +|.+.+++.++. .......|++|
T Consensus        79 ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          79 LGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             eEEEEEeHHHhhhcCCcCcceecC
Confidence            999999999987 55666677653

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.24  E-value=4.8e-11  Score=102.83  Aligned_cols=93  Identities=27%  Similarity=0.382  Sum_probs=77.7

Q ss_pred             EEEEEEEeecCCCC--CCCCC--CCcEEEEEEcCc-ceeEeecccCCCCC--CeeeeEEEEEeccC--------------
Q 008214          450 LSVTVILAENLPAS--DLMGK--ADPYVVLTMKKS-ETRNKTRVVNDCLN--PIWNQTFDFVVEDG--------------  508 (573)
Q Consensus       450 L~V~v~~a~~L~~~--~~~~~--~dpyv~v~l~~~-~~~~kT~~~~~t~n--P~wne~f~f~v~~~--------------  508 (573)
                      |+|.|.+|++++..  +..|.  +||||++.+.+. ..+++|.+.+++.|  |.||+.|.|++..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            78999999997653  33564  999999999764 57899999999999  99999999987641              


Q ss_pred             ---------CCCEEEEEEEeCCCCCC-ceeEEEEEEcceeeecC
Q 008214          509 ---------LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG  542 (573)
Q Consensus       509 ---------~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~  542 (573)
                               ....|.++|||.|.++. |+||.++++|..+....
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     24589999999999875 79999999999887553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.23  E-value=3.9e-12  Score=136.53  Aligned_cols=91  Identities=31%  Similarity=0.491  Sum_probs=82.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  525 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-  525 (573)
                      ...++|++.+|-+|...|.+|..|||+.+.++++...-+...+.+|.||+|++.|++.+..+....+.++|||+|..+. 
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d  691 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD  691 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence            4568899999999999999999999999999986556788889999999999999999998888899999999999875 


Q ss_pred             ceeEEEEEEcce
Q 008214          526 DYMGRCILTLTR  537 (573)
Q Consensus       526 d~lG~~~i~l~~  537 (573)
                      +.+|...++|+.
T Consensus       692 ~~iget~iDLEn  703 (1105)
T KOG1326|consen  692 EKIGETTIDLEN  703 (1105)
T ss_pred             chhhceehhhhh
Confidence            699999999875

>PLN02223 phosphoinositide phospholipase C

Probab=99.20  E-value=2.5e-10  Score=118.63  Aligned_cols=104  Identities=25%  Similarity=0.343  Sum_probs=85.7

Q ss_pred             ceEEEEEEEEeeeccC-----CCCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEE
Q 008214          261 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY  333 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~  333 (573)
                      ...|.|+|+.|.+++.     .+.....||||+|.+.+  .+...++|++..|+.||+|||+|.|.+..++-..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            4679999999998751     12234679999999973  3344677888899999999999999999888888999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      |+|....|+++|++.+|+..|..|-   .+++|.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~  518 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLY  518 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence            9998888999999999999998876   445664

>cd00030 C2 C2 domain

Probab=99.19  E-value=1.6e-10  Score=95.38  Aligned_cols=100  Identities=46%  Similarity=0.761  Sum_probs=85.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-cee
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM  528 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l  528 (573)
                      |.|.|++|+++......+..||||.+++.+ ...++|+++.++.||.||+.|.|.+.......|.|+||+.+..+. .++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i   79 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL   79 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence            468999999998876677899999999975 467899999999999999999999986456789999999988764 699


Q ss_pred             EEEEEEcceee-ecCeEeEEEEc
Q 008214          529 GRCILTLTRVI-LEGEYTDCFEL  550 (573)
Q Consensus       529 G~~~i~l~~l~-~~~~~~~~~~L  550 (573)
                      |++.+++.++. ......+|++|
T Consensus        80 g~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          80 GEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEEeHHHhhhcCCcCcceecC
Confidence            99999999998 55566788765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02270 phospholipase D alpha

Probab=99.18  E-value=2.1e-10  Score=124.01  Aligned_cols=123  Identities=19%  Similarity=0.376  Sum_probs=104.2

Q ss_pred             ceeeEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEcCcceeEeecccCCC-CCCeeeeEEEEEe
Q 008214          445 IIRGVLSVTVILAENLPASD------------------LMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVV  505 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~------------------~~~~~dpyv~v~l~~~~~~~kT~~~~~t-~nP~wne~f~f~v  505 (573)
                      ..-|.|.++|++|++|++.+                  ..+.+||||.+.+++ .+..||+++.+. .||.|||.|.++|
T Consensus         5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~   83 (808)
T PLN02270          5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYC   83 (808)
T ss_pred             eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEee
Confidence            34589999999999998631                  124679999999985 578899999885 6999999999999


Q ss_pred             ccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEecCC
Q 008214          506 EDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQPI  569 (573)
Q Consensus       506 ~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~~~  569 (573)
                      .... ..++|.|.|.+.++..+||.+.||..+++.+...+.||++.+.      +..+|+++++|.|...
T Consensus        84 ah~~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         84 AHMA-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             ccCc-ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence            9754 6799999999999889999999999999999889999998542      2459999999998654

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.17  E-value=2.4e-10  Score=94.44  Aligned_cols=94  Identities=41%  Similarity=0.793  Sum_probs=80.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  527 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  527 (573)
                      +.+.|++|++|......+..+|||++++... ....+|+++.++.||.|||.|.|.+..+....|.|+|||.+..+. .+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6789999999998776567899999999753 147899999999999999999999987657899999999987754 69


Q ss_pred             eEEEEEEcceeeecCe
Q 008214          528 MGRCILTLTRVILEGE  543 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~  543 (573)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999999876544

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.15  E-value=2e-10  Score=93.01  Aligned_cols=85  Identities=22%  Similarity=0.357  Sum_probs=72.9

Q ss_pred             HHHHHhhCh-hh-HHHHHHHHHHhHHHHHhh-hCCCccceEEEeEEecCCCCceEeEEEEEEc-CCCeEEEEEeeEEecC
Q 008214           75 NHHLEKLWP-YV-NEAASELIKSSVEPVLEQ-YRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDAN  150 (573)
Q Consensus        75 N~~l~~~Wp-~~-~~~~~~~~~~~~~~~l~~-~~p~~l~~i~~~~~~lG~~pP~i~~i~~~~~-~~~~~~le~~~~~~~~  150 (573)
                      |.+++|++- +. .+.+.+.+++.++..|++ .+|++++.|++++++||+.||.|+++++.+. .++++.+|+|+.|.|+
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~   80 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG   80 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence            677777765 33 357899999999999998 4699999999999999999999999999865 4456999999999999


Q ss_pred             cceEEEEee
Q 008214          151 SSIILAIKT  159 (573)
Q Consensus       151 ~~i~l~~~~  159 (573)
                      ..+.++++.
T Consensus        81 ~~l~l~t~l   89 (91)
T PF10296_consen   81 FSLTLETKL   89 (91)
T ss_pred             eEEEEEEEE
Confidence            988888763

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.14  E-value=1.1e-10  Score=121.49  Aligned_cols=120  Identities=24%  Similarity=0.347  Sum_probs=104.8

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCce
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  527 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~  527 (573)
                      ..|.|.|.+|+||++.+..|..||||.+.+.. +...||.++.+++.|.|.|.|.|.+.. .-..|.|-|||+|...++.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~-E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d~~~D~~   82 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-EEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRDLKRDDI   82 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecc-hhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccccccccc
Confidence            46889999999999999999999999999974 678999999999999999999999884 4568999999999434469


Q ss_pred             eEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEEEecCC
Q 008214          528 MGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWMPQPI  569 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~~p~~~  569 (573)
                      ||.+.|.-.+|......+.||.|...     -+|+|++++++.+.-.
T Consensus        83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~  129 (800)
T KOG2059|consen   83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ  129 (800)
T ss_pred             cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence            99999999999877777999999654     3899999999987644

>PLN02270 phospholipase D alpha

Probab=99.14  E-value=4.8e-10  Score=121.26  Aligned_cols=128  Identities=23%  Similarity=0.429  Sum_probs=105.1

Q ss_pred             ceEEEEEEEEeeeccCCC------------------CCCCCCcEEEEEEecCCCCeEEeeeeCCC-CCceeccEEEEEEe
Q 008214          261 VGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVE  321 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~~T~~~~~~-~nP~w~e~f~f~v~  321 (573)
                      .|.|.|+|.+|++|++.+                  ..+.+|||+.+.+.  +.+..||+++.+. .||+|+|+|.+.+-
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEeec
Confidence            599999999999998631                  12467999999997  4678899999885 69999999999987


Q ss_pred             cCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCC
Q 008214          322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME  394 (573)
Q Consensus       322 ~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~  394 (573)
                      ... ..+.|.|.|.|.++ ..+||.+.+|+.++..+...+.|+++.....  +..+....|+++++|.|....
T Consensus        85 h~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~--~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         85 HMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDK--NPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             cCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCC--CcCCCCCEEEEEEEEEEcccC
Confidence            654 58999999999875 4699999999999999999999999975432  223344589999999997654

>PLN02952 phosphoinositide phospholipase C

Probab=99.11  E-value=1.1e-09  Score=116.39  Aligned_cols=105  Identities=24%  Similarity=0.364  Sum_probs=86.8

Q ss_pred             ceEEEEEEEEeeeccCC------CCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEE
Q 008214          261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v  332 (573)
                      ...|.|+|+.|.+++..      +.....||||++.+.+  .+..+++|+++.++.||+|||+|.|.+..++-..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999887531      1123459999999963  334567999999999999999999999988777899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ||+|..+.++++|++.+|+..|..|-   .|++|..
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~  581 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD  581 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence            99998888999999999999999876   4778853

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.06  E-value=3.7e-10  Score=121.62  Aligned_cols=89  Identities=29%  Similarity=0.437  Sum_probs=79.6

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCe--EEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~--~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~  339 (573)
                      -..+|.|++|-+|...|.+|.+|||+++.++   ++.  -+...+.+++||+|.+.|.+....+....+.++|||+|..+
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            3567999999999999999999999999997   333  56777899999999999999988887788999999999999


Q ss_pred             CCCceEEEEEEccc
Q 008214          340 SSELIGCAQVRLCE  353 (573)
Q Consensus       340 ~d~~lG~~~i~l~~  353 (573)
                      +|+.+|+..++|+.
T Consensus       690 ~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  690 QDEKIGETTIDLEN  703 (1105)
T ss_pred             ccchhhceehhhhh
Confidence            99999999999875

>PLN02223 phosphoinositide phospholipase C

Probab=99.06  E-value=1.7e-09  Score=112.54  Aligned_cols=115  Identities=23%  Similarity=0.356  Sum_probs=90.2

Q ss_pred             eeEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEE
Q 008214          447 RGVLSVTVILAENLPAS-----DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW  518 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~-----~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~  518 (573)
                      ...|.|+|+.|.+++..     +....+||||+|.+.+   ...+++|.+..++.||+|||+|+|.+..|.-..|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46899999999987521     2234689999999964   234567888788999999999999999888889999999


Q ss_pred             eCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214          519 DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  564 (573)
Q Consensus       519 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~  564 (573)
                      |+|..++ +++|+..+|++.+..+-   ++.+|.+.     ..-.|.+.++|
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence            9998654 79999999999997654   45666432     24567777776

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.01  E-value=3.8e-09  Score=112.22  Aligned_cols=105  Identities=21%  Similarity=0.279  Sum_probs=85.5

Q ss_pred             ceEEEEEEEEeeeccCC------CCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEE
Q 008214          261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v  332 (573)
                      ..+|.|+|+.+.+++..      +.....||||+|.+-.  .+..+++|++..++.||+|||+|.|.+..++-..|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46899999999987421      2223469999999963  334457888889999999999999999988888999999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      +|+|...+|+++|++.+|+..|..|-.   .++|..
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~  580 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFN  580 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccc---eEeccC
Confidence            999988899999999999999988753   445543

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.97  E-value=9.9e-09  Score=108.92  Aligned_cols=104  Identities=22%  Similarity=0.281  Sum_probs=84.5

Q ss_pred             ceEEEEEEEEeeecc----CC--CCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEE
Q 008214          261 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v  332 (573)
                      ...|+|+|+.+.++.    ..  +.....||||+|.+.+  .+..+++|+++.++.||+|||+|.|.+..++-..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753    11  1223579999999963  344568999999999999999999999988888999999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      +|+|....|+++|++.+|+..|..|-.   .++|.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~  562 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLH  562 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccc---eEEcc
Confidence            999987889999999999999988753   44554

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.96  E-value=1.8e-10  Score=119.64  Aligned_cols=129  Identities=34%  Similarity=0.607  Sum_probs=104.8

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC----------------------------CeEEeeeeCCCCCce
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----------------------------KTKKSKTINNDLNPI  311 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------~~~~T~~~~~~~nP~  311 (573)
                      |.-.+.|.+.+|++|.++|.+|.+|||+...+.+...                            -.+-|++++.|+||+
T Consensus       112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk  191 (1103)
T KOG1328|consen  112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK  191 (1103)
T ss_pred             CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence            4445677888999999999999999999987753110                            024578889999999


Q ss_pred             eccEEEEEEecCCCcEEEEEEEeCCCC---------------------------------CC---CCceEEEEEEccccC
Q 008214          312 WNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCELE  355 (573)
Q Consensus       312 w~e~f~f~v~~~~~~~l~i~v~d~~~~---------------------------------~~---d~~lG~~~i~l~~l~  355 (573)
                      |+|.|.|.+.+..++.+.+.+||+|.-                                 +.   |||+|++.|||.++.
T Consensus       192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            999999999999999999999998731                                 12   899999999999997


Q ss_pred             CCceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214          356 PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (573)
Q Consensus       356 ~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~  392 (573)
                      ... .+.||+|.+...   ..+..|++++.+...-.+
T Consensus       272 ~~G-ld~WFkLepRS~---~S~VqG~~~LklwLsT~e  304 (1103)
T KOG1328|consen  272 PDG-LDQWFKLEPRSD---KSKVQGQVKLKLWLSTKE  304 (1103)
T ss_pred             cch-HHHHhccCcccc---cccccceEEEEEEEeeec
Confidence            644 689999987643   568899999999876443

>PLN02228 Phosphoinositide phospholipase C

Probab=98.95  E-value=1.2e-08  Score=108.10  Aligned_cols=124  Identities=19%  Similarity=0.247  Sum_probs=95.5

Q ss_pred             ceEEEEEEEEeeeccC---C---CCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCcee-ccEEEEEEecCCCcEEEEE
Q 008214          261 VGTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR  331 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w-~e~f~f~v~~~~~~~l~i~  331 (573)
                      ...|+|+|++|.+|+.   .   +.....||||+|.+.+  .+...++|++++++.||+| ||+|.|.+..++-..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3579999999998731   1   1123479999999963  3445689999999999999 9999999998887899999


Q ss_pred             EEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      |+|+|..+.|+++|++.+|+..|..|-   ..++|....   ...-...+|.+.+.+.+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~---G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRA---GKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCC---CCCCCCeEEEEEEEEcC
Confidence            999998888999999999999998765   345664322   12234567888887764

>PLN02228 Phosphoinositide phospholipase C

Probab=98.95  E-value=8.9e-09  Score=108.97  Aligned_cols=122  Identities=23%  Similarity=0.325  Sum_probs=96.7

Q ss_pred             eeEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCee-eeEEEEEeccCCCCEEEEE
Q 008214          447 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE  516 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~----~--~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i~  516 (573)
                      ...|.|+|++|.+|+.    .  +....+||||++.+.+   ...+++|++++++.||+| ||+|+|.+..+.-..|.|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998742    1  1223479999999854   234679999988899999 9999999998877899999


Q ss_pred             EEeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcC---CC--CCeEEEEEEEEEecCCCC
Q 008214          517 VWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD---GT--KSGKLKLHLKWMPQPIYR  571 (573)
Q Consensus       517 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~---~~--~~G~i~l~l~~~p~~~~~  571 (573)
                      |+|++..+. +++|+..||++.+..+-+   ..+|.   |.  ....|.+.+.+.+.++||
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~~~~~  567 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPPYTFR  567 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCccccC
Confidence            999986644 799999999999965533   45663   32  357899999999999987

>PLN02952 phosphoinositide phospholipase C

Probab=98.93  E-value=1.1e-08  Score=109.05  Aligned_cols=115  Identities=23%  Similarity=0.372  Sum_probs=88.7

Q ss_pred             eeEEEEEEEEeecCCCC------CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEE
Q 008214          447 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  517 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~------~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V  517 (573)
                      ...|.|+|+.|.+++..      +....+||||++.+.+   ...+++|+++.++.||+|||+|+|.+..+.-..+.|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46799999999987532      1223469999999954   23567999999999999999999999987778899999


Q ss_pred             EeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcC---CCCCe--EEEEEEEE
Q 008214          518 WDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD---GTKSG--KLKLHLKW  564 (573)
Q Consensus       518 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~---~~~~G--~i~l~l~~  564 (573)
                      +|+|..++ +++|+..+|++.+..+-   +|++|.   |..-+  .+.+.+.|
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~  598 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF  598 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence            99987654 79999999999997654   488885   33333  44445544

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.92  E-value=8.8e-09  Score=106.26  Aligned_cols=182  Identities=24%  Similarity=0.347  Sum_probs=132.3

Q ss_pred             eEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC----CCCCceEEEEEEccccCCCceeEEEEEeeeccccc
Q 008214          298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ  373 (573)
Q Consensus       298 ~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~----~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  373 (573)
                      ..+|.++.+.+||.|.+.|.+.......|.+++.++|.+..    ...+++|++.+.+..+........-+.+.     .
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~-----~  116 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLK-----P  116 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcc-----c
Confidence            45899999999999999998888877889999999997743    45789999999999886543222212221     1


Q ss_pred             CCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHhccCcccccCCCCCcchhhhchhhhccccccceeeEEEEE
Q 008214          374 RDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVT  453 (573)
Q Consensus       374 ~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~  453 (573)
                      ......|+|.+..+-.                                                       ........-
T Consensus       117 ~~~~~~g~iti~aee~-------------------------------------------------------~~~~~~~~~  141 (529)
T KOG1327|consen  117 GKNAGSGTITISAEED-------------------------------------------------------ESDNDVVQF  141 (529)
T ss_pred             CccCCcccEEEEeecc-------------------------------------------------------cccCceeee
Confidence            1334556666655321                                                       001122233


Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEEc--C--cceeEeecccCCCCCCeeeeEEEEEecc----CCCCEEEEEEEeCCCCCC
Q 008214          454 VILAENLPASDLMGKADPYVVLTMK--K--SETRNKTRVVNDCLNPIWNQTFDFVVED----GLHDMLIAEVWDHDTFGK  525 (573)
Q Consensus       454 v~~a~~L~~~~~~~~~dpyv~v~l~--~--~~~~~kT~~~~~t~nP~wne~f~f~v~~----~~~~~L~i~V~d~~~~~~  525 (573)
                      ..+|++|..++..+++|||..++-.  .  ....++|.+++++++|.|.. |......    ..+..+.+.+||.+..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            5669999999999999999998863  2  12468999999999999995 4444332    134688999999998877


Q ss_pred             -ceeEEEEEEcceeee
Q 008214          526 -DYMGRCILTLTRVIL  540 (573)
Q Consensus       526 -d~lG~~~i~l~~l~~  540 (573)
                       +++|.+..+++++..
T Consensus       221 ~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCceeEecccHHHhcc
Confidence             799999999988753

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.92  E-value=3.5e-09  Score=85.44  Aligned_cols=86  Identities=22%  Similarity=0.330  Sum_probs=71.0

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCc
Q 008214          450 LSVTVILAENLPASD---LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD  526 (573)
Q Consensus       450 L~V~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d  526 (573)
                      |.|+|+.|+|+....   ..+.+||||.+.+++ ..+.||++   +.||.|||.|.|.+.  ....+.+.|||+.....-
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~   74 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPV   74 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeec
Confidence            578999999998776   577899999999986 34778875   589999999999995  467899999998653223


Q ss_pred             eeEEEEEEcceeeec
Q 008214          527 YMGRCILTLTRVILE  541 (573)
Q Consensus       527 ~lG~~~i~l~~l~~~  541 (573)
                      .+|..-+.|++|..+
T Consensus        75 Pi~llW~~~sdi~Ee   89 (109)
T cd08689          75 PVGLLWLRLSDIAEE   89 (109)
T ss_pred             ceeeehhhHHHHHHH
Confidence            799999999998754

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.91  E-value=7.8e-09  Score=109.73  Aligned_cols=121  Identities=22%  Similarity=0.342  Sum_probs=93.4

Q ss_pred             EEEEEEEEeeeccCCCC----CCCCCcEEEEEEec--CCCCeEEee-eeCCCCCceeccEEEEEEecCCCcEEEEEEEeC
Q 008214          263 TLEVKLVQAKGLTNKDL----IGKSDPYAVLFVRP--LPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~----~g~~dpyv~v~~~~--~~~~~~~T~-~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~  335 (573)
                      +|.|+|+++.++.....    ...+||||.|.+.+  .+....+|+ +..|+-||.|+|+|+|.+..++-..|+|+|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            69999999997664321    24579999999863  333467888 568899999999999999999988999999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      |..++|+|+|+..+|+..|..|-.+   ++|...   ....-...+|.+.+.+.
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~---~G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSR---EGEALSSASLFVRIAIV  744 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee---eeecCC---CCccccceeEEEEEEEe
Confidence            9999999999999999999887533   455422   12333455666666654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.88  E-value=6.1e-09  Score=84.06  Aligned_cols=84  Identities=24%  Similarity=0.442  Sum_probs=69.8

Q ss_pred             EEEEEEEeeeccCCC---CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214          264 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (573)
Q Consensus       264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~  340 (573)
                      |.|+|.+|+|+...+   ..+.+||||.++++  +.++.||++   +.||.|||+|.|.+.  ....+.+.|||... ..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~   72 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ   72 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence            578999999999877   56789999999997  244777876   479999999999995  46799999999865 45


Q ss_pred             CCceEEEEEEccccC
Q 008214          341 SELIGCAQVRLCELE  355 (573)
Q Consensus       341 d~~lG~~~i~l~~l~  355 (573)
                      .-.+|...+.+++|.
T Consensus        73 ~~Pi~llW~~~sdi~   87 (109)
T cd08689          73 PVPVGLLWLRLSDIA   87 (109)
T ss_pred             ecceeeehhhHHHHH
Confidence            678999888888874

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.85  E-value=2.1e-08  Score=106.69  Aligned_cols=115  Identities=23%  Similarity=0.360  Sum_probs=89.3

Q ss_pred             eeEEEEEEEEeecCCCC------CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEE
Q 008214          447 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  517 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~------~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V  517 (573)
                      ...|.|+|+.|.+++..      +....+||||+|.+.+   ...+++|++..++.||+|||+|+|.+..|.-..|.|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999987532      2233579999999954   23467889888999999999999999988888999999


Q ss_pred             EeCCCCC-CceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214          518 WDHDTFG-KDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  564 (573)
Q Consensus       518 ~d~~~~~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~  564 (573)
                      +|++..+ ++++|+..||++.+..+-+   ..+|.+.     ..-.|.+.+.|
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence            9998864 4799999999999876544   5566432     24567777766

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.80  E-value=5e-08  Score=103.63  Aligned_cols=115  Identities=23%  Similarity=0.342  Sum_probs=88.7

Q ss_pred             eeEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEE
Q 008214          447 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  517 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~----~--~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V  517 (573)
                      ...|.|+|+.|.+++.    .  +....+||||+|.+.+   ...+++|+++.++.||+|||+|+|.+..+.-..|.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            4679999999987532    1  2234579999999953   23567999999999999999999999888778999999


Q ss_pred             EeCCCCC-CceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214          518 WDHDTFG-KDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  564 (573)
Q Consensus       518 ~d~~~~~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~  564 (573)
                      +|+|..+ ++++|+..+|++.+..+-+   ..+|.+.     ....+.+.+.|
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEe
Confidence            9998765 4799999999999875543   5566332     24567777766

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.76  E-value=3.6e-08  Score=103.97  Aligned_cols=124  Identities=19%  Similarity=0.271  Sum_probs=92.5

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEec--CCCC-eEEeeeeCCCCCceec-cEEEEEEecCCCcEEEEEEEeCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP--LPEK-TKKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~-~~~T~~~~~~~nP~w~-e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      -.|.|.|+.|++|+... .|-..|||.|.+.+  .+.. .++|.++.|++||+|| |.|+|.+.+|+-..|+|.|||.|-
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            46889999999999543 35567999999963  2233 4555567899999999 999999999998999999999999


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~  392 (573)
                      ++...|||++.+|+..+..|-.   -.+|.+..   .+.-.-..+.+.+...|..
T Consensus      1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y---SEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY---SEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred             cCCcceeeeeecchhhhhccce---eeecccCc---hhhhhhhhheeeeEecccc
Confidence            9888999999999999876532   23442211   1223345566666666643

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.76  E-value=4.2e-08  Score=104.28  Aligned_cols=118  Identities=22%  Similarity=0.349  Sum_probs=90.9

Q ss_pred             EEEEEEEEeecCCCCCC----CCCCCcEEEEEEcC---cceeEeec-ccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeC
Q 008214          449 VLSVTVILAENLPASDL----MGKADPYVVLTMKK---SETRNKTR-VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  520 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~----~~~~dpyv~v~l~~---~~~~~kT~-~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~  520 (573)
                      .|.|.|+.|.+++....    ....||||.+.+.+   .....+|+ +..++-||.|+|+|+|.+..|.-.-|.|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            89999999997765322    24579999999854   34567899 456688999999999999999889999999999


Q ss_pred             CCCC-CceeEEEEEEcceeeecCeEeEEEEcCCC--CCeEEEEEEEEEe
Q 008214          521 DTFG-KDYMGRCILTLTRVILEGEYTDCFELDGT--KSGKLKLHLKWMP  566 (573)
Q Consensus       521 ~~~~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~--~~G~i~l~l~~~p  566 (573)
                      +..+ +||+|+.++|++++..+-++-.=+..+|.  ....|.+.+.|.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRHVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceeeeeecCCCCccccceeEEEEEEEec
Confidence            9987 47999999999999765443222222333  3678888888764

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.76  E-value=9.6e-09  Score=112.14  Aligned_cols=107  Identities=23%  Similarity=0.302  Sum_probs=89.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEE---eccCCCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~---v~~~~~~~L~i~V~d~  520 (573)
                      .|.|+|.|.-|++|+.......+||||+.++..   +..+.||+++++|+||.|||...+.   ........|+++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            489999999999997765567899999999952   3467899999999999999998875   2233456899999998


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      +.... .++|.+.|+|.++...++...||+|...
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            87755 5999999999999888887899999764

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.75  E-value=3.7e-08  Score=100.19  Aligned_cols=124  Identities=25%  Similarity=0.440  Sum_probs=102.5

Q ss_pred             eEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceec-cEEEEEEecC--CCcEEEEEEEeCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG  337 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~-e~f~f~v~~~--~~~~l~i~v~d~~~  337 (573)
                      |.|.|+|..|++|+-+|.. ...|.||.+.+.   ...+||.+..+++||.|| +.|.|.|.+.  ....|.+.+.|+|.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            7889999999999998865 467999999998   778999999999999998 5689998765  45689999999999


Q ss_pred             CCCCCceEEEEEEccccCC----------CceeEEEEEeeecccccCCCcceeEEEEEEEEeecCC
Q 008214          338 IQSSELIGCAQVRLCELEP----------GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM  393 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~----------~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~  393 (573)
                      .+.++-||.+.|+++.|.-          +.....|+++....     ...+|+|.+-+..--+.+
T Consensus        80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkvdlfnd  140 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKVDLFND  140 (1169)
T ss_pred             cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEEeehhh
Confidence            9999999999999998732          34567899987543     357889888776554444

>PLN02352 phospholipase D epsilon

Probab=98.66  E-value=1.8e-07  Score=101.45  Aligned_cols=118  Identities=19%  Similarity=0.329  Sum_probs=91.8

Q ss_pred             ceeeEEEEEEEEeecCCCC----CC-CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEe
Q 008214          445 IIRGVLSVTVILAENLPAS----DL-MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD  519 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~----~~-~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d  519 (573)
                      ..-|.|.++|.+|+-+...    .. ....||||.+.+++ .+..||   .+..||.|+|.|.++|.......+.|.|.|
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~   82 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT   82 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence            3458999999999843221    11 11239999999985 466677   556699999999999997765689999988


Q ss_pred             CCCCCCceeEEEEEEcceeeecCe-EeEEEEcCCC-----CCeEEEEEEEEEecCCC
Q 008214          520 HDTFGKDYMGRCILTLTRVILEGE-YTDCFELDGT-----KSGKLKLHLKWMPQPIY  570 (573)
Q Consensus       520 ~~~~~~d~lG~~~i~l~~l~~~~~-~~~~~~L~~~-----~~G~i~l~l~~~p~~~~  570 (573)
                          +..+||.+.||..+++.++. .+.||++.+.     +..+|+++++|.|....
T Consensus        83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence                35799999999999998866 8999998543     23599999999987654

>PLN02352 phospholipase D epsilon

Probab=98.61  E-value=3.6e-07  Score=99.19  Aligned_cols=122  Identities=14%  Similarity=0.301  Sum_probs=92.7

Q ss_pred             cceEEEEEEEEeeeccCC----CCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEe
Q 008214          260 PVGTLEVKLVQAKGLTNK----DLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD  334 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d  334 (573)
                      -.|.|.++|.+|+-+...    +.. ...|||+.+.++  +.+..||   .+..||+|+|+|.+.+-......+.|.|.|
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence            369999999999844321    111 123999999997  3556777   566799999999999876654579999988


Q ss_pred             CCCCCCCCceEEEEEEccccCCCce-eEEEEEeeecccccCCCcceeEEEEEEEEeecCCC
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME  394 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~  394 (573)
                           ...+||.+.+|+.++..+.. .+.|+++......  .... ..|+++++|.|....
T Consensus        83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~--p~~~-~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGK--PNPE-LKLRFMLWFRPAELE  135 (758)
T ss_pred             -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCC--CCCC-CEEEEEEEEEEhhhC
Confidence                 25799999999999988865 8999999765421  1122 599999999997654

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.60  E-value=1.6e-08  Score=105.40  Aligned_cols=96  Identities=31%  Similarity=0.476  Sum_probs=81.8

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC----CCeEEeeeeCCCCCceeccEEEEEEecC----CCcEEEEEE
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRI  332 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~~~~~~~nP~w~e~f~f~v~~~----~~~~l~i~v  332 (573)
                      .-.|.|.|+.|+++.+-|.+|.+||||++.+.|..    -...+|+++.+|+||+|+|.|+|.|...    ++..+.|.|
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence            44566777899999999999999999999998522    2357899999999999999999999743    345799999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCC
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEP  356 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~  356 (573)
                      +|+|-...+||-|++.+.|+++..
T Consensus      1026 MDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             eccceecccccchHHHHhhCCCCC
Confidence            999999999999999999988753

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.58  E-value=1.6e-07  Score=99.21  Aligned_cols=102  Identities=25%  Similarity=0.383  Sum_probs=82.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC----cceeEeecccCCCCCCeee-eEEEEEeccCCCCEEEEEEEeCCC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRVVNDCLNPIWN-QTFDFVVEDGLHDMLIAEVWDHDT  522 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~~~~~L~i~V~d~~~  522 (573)
                      -.|.|.|+.||.|+... .|-..|+|++.+-+    ....++|.++.++.||+|| |.|+|.|.+|.-..|.+.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            47899999999999543 34567999999843    2234556667889999999 999999999999999999999999


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      +++ .|||++..|+..|..+-   +..+|.+.
T Consensus      1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ 1172 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNG 1172 (1267)
T ss_pred             cCCcceeeeeecchhhhhccc---eeeecccC
Confidence            987 69999999999986542   34556544

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.53  E-value=2.1e-07  Score=94.78  Aligned_cols=114  Identities=31%  Similarity=0.485  Sum_probs=93.7

Q ss_pred             eEEEEEEEEeecCCCCCCCC-CCCcEEEEEEcCcceeEeecccCCCCCCeee-eEEEEEecc--CCCCEEEEEEEeCCCC
Q 008214          448 GVLSVTVILAENLPASDLMG-KADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVED--GLHDMLIAEVWDHDTF  523 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~--~~~~~L~i~V~d~~~~  523 (573)
                      |.|-|.|..|++||.+|..+ ..|.||++.+..  ..+||.+..+++||.|| +=|.|.+.+  ..++.|+|.++|+|..
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n--~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN--TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecc--cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            77899999999999988644 579999999976  78999999999999999 558888864  4667999999999998


Q ss_pred             CC-ceeEEEEEEcceeeecC----------eEeEEEEcCCC---CCeEEEEEEE
Q 008214          524 GK-DYMGRCILTLTRVILEG----------EYTDCFELDGT---KSGKLKLHLK  563 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~----------~~~~~~~L~~~---~~G~i~l~l~  563 (573)
                      +. |.||.+.|+++.+..++          -...||++-+.   -+|+|.+-++
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk  134 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK  134 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence            75 89999999998876431          23789998653   3688876443

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.32  E-value=3.8e-07  Score=100.07  Aligned_cols=108  Identities=26%  Similarity=0.407  Sum_probs=89.6

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEE---EecCCCcEEEEEEEe
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYD  334 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~---v~~~~~~~l~i~v~d  334 (573)
                      ..|+|.|-|.-|++|.--.-...+||||+.|+.|...+  +.||+++++|.||.|||...+.   ........|.+.||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            36889999999999965444567999999999875543  6789999999999999987655   222345689999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      .+....+.++|.+.++|.++...+....|+.|.
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence            999999999999999999998777777999984

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.21  E-value=1.5e-06  Score=72.41  Aligned_cols=101  Identities=22%  Similarity=0.381  Sum_probs=76.3

Q ss_pred             EEEEEEEeecCCCCC-------------CCCCCCcEEEEEEc--CcceeEeecccCCCCCCeeeeEEEEEec--------
Q 008214          450 LSVTVILAENLPASD-------------LMGKADPYVVLTMK--KSETRNKTRVVNDCLNPIWNQTFDFVVE--------  506 (573)
Q Consensus       450 L~V~v~~a~~L~~~~-------------~~~~~dpyv~v~l~--~~~~~~kT~~~~~t~nP~wne~f~f~v~--------  506 (573)
                      |.|.|++|.+|....             ..-.-|+|+++.+.  .+....+|+++.++-.|.|+..++|+|.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            467788888886421             01125899999963  3456789999999999999999999986        


Q ss_pred             c-------CCCCEEEEEEEeCCCCC----------Cc-eeEEEEEEcceeeec-CeEeEEEEc
Q 008214          507 D-------GLHDMLIAEVWDHDTFG----------KD-YMGRCILTLTRVILE-GEYTDCFEL  550 (573)
Q Consensus       507 ~-------~~~~~L~i~V~d~~~~~----------~d-~lG~~~i~l~~l~~~-~~~~~~~~L  550 (573)
                      .       .....+.++||.+...+          +| .||.+.||+.+++.. .....||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1       13458999999876431          35 799999999999876 456899975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.20  E-value=5.7e-06  Score=85.86  Aligned_cols=87  Identities=30%  Similarity=0.505  Sum_probs=70.4

Q ss_pred             EEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEecC----CCcEEEEEEEeCCCCCCC
Q 008214          269 VQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       269 ~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~~~----~~~~l~i~v~d~~~~~~d  341 (573)
                      ++|++|.++|..+++|||..++-...++   ..++|.+.++++||.|.+ |.+.....    ....+.+.+||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            5689999999999999999887652122   258999999999999988 55554433    245788999999998889


Q ss_pred             CceEEEEEEccccCC
Q 008214          342 ELIGCAQVRLCELEP  356 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~  356 (573)
                      +++|.+..++.++..
T Consensus       222 ~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQE  236 (529)
T ss_pred             CceeEecccHHHhcc
Confidence            999999999998864

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=6.2e-06  Score=79.49  Aligned_cols=103  Identities=24%  Similarity=0.348  Sum_probs=80.6

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeC
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~  335 (573)
                      ....+.|++++|.+|..+|.+|.+|||+..++.+.-+.  +++|++.+++.||+||++|.|.+...  ....+.+.|||+
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            45678899999999999999999999999999754333  57788889999999999999887632  456789999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEE
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWL  364 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~  364 (573)
                      +..+..+.+|-+...+  ...+.....|.
T Consensus       311 ~~G~s~d~~GG~~~g~--~rr~~v~~h~g  337 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGG--YRRGEVHKHWG  337 (362)
T ss_pred             CCCcCccCCCcccccc--cccchhhcCcc
Confidence            9877888998754433  33344444443

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=97.89  E-value=5.2e-05  Score=79.33  Aligned_cols=227  Identities=15%  Similarity=0.244  Sum_probs=153.1

Q ss_pred             CCCCceecCcc-------cchHHHHHHHHhhChh------hHHHHHHHHHHhHHHHHhhhC-CCccceEEEeEEecCCCC
Q 008214           58 FYPSWVVFSHR-------QKLTWLNHHLEKLWPY------VNEAASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVA  123 (573)
Q Consensus        58 ~~p~w~~~~~~-------E~~~WlN~~l~~~Wp~------~~~~~~~~~~~~~~~~l~~~~-p~~l~~i~~~~~~lG~~p  123 (573)
                      ..|.|+.....       -.|-.+|.++..++.-      +..++.+.+...++.++.... ...+..+.+.++-+|.+-
T Consensus        81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f  160 (1051)
T KOG3532|consen   81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF  160 (1051)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence            47788765321       2355566666666542      222333444444555555443 348999999999999999


Q ss_pred             ceEeEEEEEEcC-------------------------CCeEEEEEeeEEecCcceEEEEeeeeceeeeEEEEEEEEEEEE
Q 008214          124 PQFTGVSIIEDG-------------------------GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF  178 (573)
Q Consensus       124 P~i~~i~~~~~~-------------------------~~~~~le~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~  178 (573)
                      |.+++.+++.-+                         -..+.+-+|++|.|+.--++++....+..-.++|+..+++|.+
T Consensus       161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~  240 (1051)
T KOG3532|consen  161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV  240 (1051)
T ss_pred             ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence            999999998511                         1234567889999987666666666666777889999999999


Q ss_pred             EEEeecCCcCCCeeeEEEEEecccceeeEEEEE--ccccccCCcchHHHHHHHHHHHHHhcccccceee--ecCCC----
Q 008214          179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKI--VPILP----  250 (573)
Q Consensus       179 rv~l~pl~~~~P~~~~~~~~f~~~p~l~f~~~~--~g~~~~~iP~l~~~~~~~i~~~i~~~~~~P~~~~--ipl~~----  250 (573)
                      |+.+.    .-|+ ..++++|...|.+....+.  .|..+..  -|...+...++.++....+||++..  .|.-.    
T Consensus       241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~  313 (1051)
T KOG3532|consen  241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF  313 (1051)
T ss_pred             eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence            99886    4565 3589999999976655433  2222111  1344678888888899999999753  13221    


Q ss_pred             ----CCCcccccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEec
Q 008214          251 ----GDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP  293 (573)
Q Consensus       251 ----~~~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~  293 (573)
                          ...+.....+.|.+.|++.++..|..  ..++..-||.+.+.+
T Consensus       314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  314 QASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES  358 (1051)
T ss_pred             ccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence                11122233678999999999988854  457788899988864

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.88  E-value=0.0015  Score=65.59  Aligned_cols=257  Identities=13%  Similarity=0.131  Sum_probs=149.4

Q ss_pred             EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec-------CCCcEEEEEEEeCC
Q 008214          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE  336 (573)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~-------~~~~~l~i~v~d~~  336 (573)
                      +.|+|++|++.+...   ...-.+..++.   +....|..+..+..|.||.+..+.+..       .....|++++|..+
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            578999999998652   23345566665   777888888899999999988887742       24568999999988


Q ss_pred             -CCCCCCceEEEEEEcccc---CCC--ceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCCCCccC-CC----CCCC
Q 008214          337 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTN-PF----APNF  405 (573)
Q Consensus       337 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~-~~----~~~~  405 (573)
                       ..++.+.+|.+.++|...   ..+  .....|++|.....  +-.+..-+|.+.+........+.... .+    .+..
T Consensus        76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~  153 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPR  153 (340)
T ss_pred             CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCccccccccCCCcc
Confidence             557789999999999998   555  56789999975422  12223446666666654332111000 00    0000


Q ss_pred             ChhhHHHHhccCcccccCCCCCcchhhhchh---hhccccccceeeEEEEEEEEeecCCCCC----C--CCCCCcEEEEE
Q 008214          406 SMTSLEKVLTNGEKALKSGANGTEAIELEKD---ASQKRREVIIRGVLSVTVILAENLPASD----L--MGKADPYVVLT  476 (573)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~V~v~~a~~L~~~~----~--~~~~dpyv~v~  476 (573)
                      +.    ....   +....+..........+.   .......-...-.|.|++..|+||...-    .  .+...-|...+
T Consensus       154 ~~----~~~~---~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Ys  226 (340)
T PF12416_consen  154 QG----HVPP---PNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYS  226 (340)
T ss_pred             cC----CCcc---cccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEE
Confidence            00    0000   000000000000000000   0000011134568999999999997641    1  12245566666


Q ss_pred             EcCcceeEeecccCCCCCCeee-eEEE-EEeccC---------CCCEEEEEEEeCCCCCCceeEEEEEEcceeeec
Q 008214          477 MKKSETRNKTRVVNDCLNPIWN-QTFD-FVVEDG---------LHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE  541 (573)
Q Consensus       477 l~~~~~~~kT~~~~~t~nP~wn-e~f~-f~v~~~---------~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~  541 (573)
                      +-+  ....|...+...+|.|. +.-. +.+...         ....|.|.++..    +..||.+.+++..++..
T Consensus       227 llG--n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g----~~~Lg~~~v~l~~Ll~~  296 (340)
T PF12416_consen  227 LLG--NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG----NQSLGSTSVPLQPLLPK  296 (340)
T ss_pred             ecC--cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC----CcEEEEEEEEhhhccCC
Confidence            655  34456666777788775 3333 555421         224677777654    35899999999998754

>PLN02964 phosphatidylserine decarboxylase

Probab=97.87  E-value=2.2e-05  Score=84.91  Aligned_cols=88  Identities=17%  Similarity=0.369  Sum_probs=74.4

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEE-EEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAV-LFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~-v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      .-.|+..+++++|+    ++   ..|+|.. ++++   .+++||.+.++|.||+||+...|.|........++.|||.+.
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSFG---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR  120 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEec---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence            35799999999997    32   3588754 5555   889999999999999999999999987666678999999999


Q ss_pred             CCCCCceEEEEEEccccCC
Q 008214          338 IQSSELIGCAQVRLCELEP  356 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~  356 (573)
                      ++.++++|.|+++|.++..
T Consensus       121 ~s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964        121 LSKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             CCHHHhhhheeecHhhccH
Confidence            9999999999998876643

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.82  E-value=1.6e-05  Score=61.44  Aligned_cols=98  Identities=20%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             EEEEEEeeeccCCCCCC-CCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEEEeCCCCCCC
Q 008214          265 EVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v~d~~~~~~d  341 (573)
                      .++|+.|++|.-....| .+.-|++--+.-.+...+||.+.+...||+|.|+|.|.+.-  ...-.|.|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            57899999998654333 34456654333223456889999999999999999998753  345578889988  45678


Q ss_pred             CceEEEEEEccccCCCceeEEEEE
Q 008214          342 ELIGCAQVRLCELEPGKVKDVWLK  365 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~~~~~~w~~  365 (573)
                      +.||.|.+.++++-..+ .++|..
T Consensus        80 e~iG~~sL~l~s~geeE-~~HW~e  102 (103)
T cd08684          80 RTIGECSLSLRTLSTQE-TDHWLE  102 (103)
T ss_pred             ceeeEEEeecccCCHHH-hhhhhc
Confidence            99999999998874432 455643

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.75  E-value=2.7e-05  Score=60.23  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=68.3

Q ss_pred             EEEEEeecCCCCCCCC-CCCcEEEEEEc-CcceeEeecccCCCCCCeeeeEEEEEec--cCCCCEEEEEEEeCCCCCCce
Q 008214          452 VTVILAENLPASDLMG-KADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGKDY  527 (573)
Q Consensus       452 V~v~~a~~L~~~~~~~-~~dpyv~v~l~-~~~~~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~L~i~V~d~~~~~~d~  527 (573)
                      +++.+|++|.-....| .+.-|++--+. .+.-.+||.+..+..||+|.|+|.|.+.  +...-.|.+.|+. ..-++..
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~   81 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRT   81 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccce
Confidence            6788999997644333 34456663332 1235689999999999999999999876  3455689999998 3323479


Q ss_pred             eEEEEEEcceeeecCeEeEEEE
Q 008214          528 MGRCILTLTRVILEGEYTDCFE  549 (573)
Q Consensus       528 lG~~~i~l~~l~~~~~~~~~~~  549 (573)
                      ||.+.++++++- .++..+|..
T Consensus        82 iG~~sL~l~s~g-eeE~~HW~e  102 (103)
T cd08684          82 IGECSLSLRTLS-TQETDHWLE  102 (103)
T ss_pred             eeEEEeecccCC-HHHhhhhhc
Confidence            999999999863 334466654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=8.9e-05  Score=72.95  Aligned_cols=108  Identities=22%  Similarity=0.372  Sum_probs=83.5

Q ss_pred             ceeeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeC
Q 008214          445 IIRGVLSVTVILAENLPASDL-MGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  520 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~  520 (573)
                      ...|.+.|.+++|++|..+.. ...++|||+|++-.   ...+.+|+...+|.+|.|.+...|.-. +....|.+.||-.
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence            457899999999999987543 23689999999843   234678999999999988887777655 4577899999953


Q ss_pred             -CCCCC-ceeEEEEEEcceeeecC-eEeEEEEcCCC
Q 008214          521 -DTFGK-DYMGRCILTLTRVILEG-EYTDCFELDGT  553 (573)
Q Consensus       521 -~~~~~-d~lG~~~i~l~~l~~~~-~~~~~~~L~~~  553 (573)
                       ..... .|+|.++|-+.++-... ....||+|-+.
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence             33333 59999999999987655 56899999764

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.57  E-value=0.00018  Score=60.22  Aligned_cols=103  Identities=17%  Similarity=0.382  Sum_probs=74.2

Q ss_pred             EEEEEEEeeeccCC---------CCC----CCCCcEEEEEEec-CCCCeEEeeeeCCCCCceeccEEEEEEe--------
Q 008214          264 LEVKLVQAKGLTNK---------DLI----GKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE--------  321 (573)
Q Consensus       264 L~V~v~~a~~L~~~---------d~~----g~~dpyv~v~~~~-~~~~~~~T~~~~~~~nP~w~e~f~f~v~--------  321 (573)
                      |.|.|++|.+|+..         ++.    -.-++|+++.+.- .+++..+|+++.++-.|.|+.+++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            35777888877631         111    1248999998753 2356788999999999999999999875        


Q ss_pred             c-------CCCcEEEEEEEeCCC----------CCCCCceEEEEEEccccCC-CceeEEEEEe
Q 008214          322 D-------ESTQHLVVRIYDDEG----------IQSSELIGCAQVRLCELEP-GKVKDVWLKL  366 (573)
Q Consensus       322 ~-------~~~~~l~i~v~d~~~----------~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L  366 (573)
                      +       .+...+.++||+...          ..+|-+||.+.||+.+|.. ......|+++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1       134578999999753          2356789999999999854 3456678763

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.39  E-value=0.00015  Score=71.91  Aligned_cols=120  Identities=18%  Similarity=0.244  Sum_probs=94.1

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEc---CcceeEeecccCCCCCCeeeeEEEEEeccC-----------CCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG-----------LHD  511 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-----------~~~  511 (573)
                      ....|.+.|.++.+++........|.|+++.+-   +...+.+|.++++|.+|.|+|.|...+...           ...
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            345677888899888875433345789988873   344678999999999999999999998742           123


Q ss_pred             EEEEEEEeCCCCCC--ceeEEEEEEcceeeecCeEeEEEEcCCC---CCeEEEEEEEEE
Q 008214          512 MLIAEVWDHDTFGK--DYMGRCILTLTRVILEGEYTDCFELDGT---KSGKLKLHLKWM  565 (573)
Q Consensus       512 ~L~i~V~d~~~~~~--d~lG~~~i~l~~l~~~~~~~~~~~L~~~---~~G~i~l~l~~~  565 (573)
                      -+.|+|+.+..+-+  .++|.+.+.|..+...-++...|+|.+.   -+|.+.+++..+
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            68999999887743  4999999999998888888899998653   379999988875

>PLN02964 phosphatidylserine decarboxylase

Probab=97.23  E-value=0.00049  Score=74.76  Aligned_cols=88  Identities=19%  Similarity=0.355  Sum_probs=72.0

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEE-EEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVL-TMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  523 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v-~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~  523 (573)
                      .-+|+..+++.+|+    +   ...|+|..+ ++|  .+.+||.+.++|.||+||+...|.+........++.|||.+.+
T Consensus        51 ~~~~~~~~~~~~~~----~---~~~~~~~~~~~~g--~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (644)
T PLN02964         51 DFSGIALLTLVGAE----M---KFKDKWLACVSFG--EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL  121 (644)
T ss_pred             cccCeEEEEeehhh----h---ccCCcEEEEEEec--ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence            45789999999987    2   235887664 455  4899999999999999999999998865556679999999998


Q ss_pred             CC-ceeEEEEEEcceeeec
Q 008214          524 GK-DYMGRCILTLTRVILE  541 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~  541 (573)
                      +. +++|.+.++|.++...
T Consensus       122 s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        122 SKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             CHHHhhhheeecHhhccHH
Confidence            76 6999999999887655

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.00034  Score=68.95  Aligned_cols=111  Identities=23%  Similarity=0.368  Sum_probs=86.1

Q ss_pred             CcceEEEEEEEEeeeccCCCC-CCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEe-
Q 008214          259 KPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD-  334 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d-  334 (573)
                      ...|.+.|.|++|++|..+.- ...++|||+||+.+.+.  -+.+|+...+|.+|.+.+...|.-. +....|.+.||. 
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence            467999999999999987542 23689999999985332  2467888889999888877666644 456689999885 


Q ss_pred             CCCCCCCCceEEEEEEccccCCCc-eeEEEEEeeecc
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKDL  370 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~  370 (573)
                      +.+...+.|+|.+.+-+.+|.... ....|+++....
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence            556677899999999999996655 778999987543

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.03  E-value=0.00043  Score=68.80  Aligned_cols=124  Identities=17%  Similarity=0.182  Sum_probs=91.7

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEe--cCCCCeEEeeeeCCCCCceeccEEEEEEecC-----------CCcE
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-----------STQH  327 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~-----------~~~~  327 (573)
                      .-.|.+.|+++.+++........|-|+++.+.  ....++.+|.+++++.+|.|+|.|.+.+...           ....
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            34566777788777644322235778888774  2335678899999999999999999988651           1235


Q ss_pred             EEEEEEeCCCC-CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          328 LVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       328 l~i~v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      +.|++|+...+ ..|.++|.|.+.|..|.........++|.     ...+...|.+.+.+...
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~-----DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLK-----DGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhcccchhhceecc-----ccccccCCeeEEEEEEe
Confidence            89999998765 56899999999999887776666777774     23556788998888874

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.88  E-value=0.012  Score=51.90  Aligned_cols=124  Identities=21%  Similarity=0.260  Sum_probs=90.6

Q ss_pred             ceeeEEEEEEEEeecCCCCC--CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC-------------C
Q 008214          445 IIRGVLSVTVILAENLPASD--LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-------------L  509 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-------------~  509 (573)
                      .....|++.|..++-+-..-  ..+..+.-..+++.-..++++|+.+..+.+|.|+|.|-|.+...             .
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            34678999999987654321  11556666666664445899999999999999999999998633             1


Q ss_pred             CCEEEEEEEeCCCCCC-ceeEEEEEEcceeeecCeE--eEEEEcCCC------CCeEEEEEEEEEecC
Q 008214          510 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEY--TDCFELDGT------KSGKLKLHLKWMPQP  568 (573)
Q Consensus       510 ~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~--~~~~~L~~~------~~G~i~l~l~~~p~~  568 (573)
                      .+.+++-|.-.+..++ .++|.-.+.-..++..+..  .....|.|.      +.|-+.++++..|..
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence            3478888887776655 6899999999888877654  344445432      579999999988764

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.60  E-value=0.098  Score=46.12  Aligned_cols=122  Identities=20%  Similarity=0.209  Sum_probs=82.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce-eEeeccc-CCCCCCeeeeEEEEEecc---C-----CCCEEEEE
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET-RNKTRVV-NDCLNPIWNQTFDFVVED---G-----LHDMLIAE  516 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~kT~~~-~~t~nP~wne~f~f~v~~---~-----~~~~L~i~  516 (573)
                      .-.+.+.+++..+++..    ...-|++...++... ..+|... .....-.|||.|.+.+.-   .     ....+.|.
T Consensus         6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            46788999999999872    223344444443211 2333332 234567899999998751   1     23478899


Q ss_pred             EEeCCCCCCc-eeEEEEEEcceeeec--CeEeEEEEcCCC--CCeEEEEEEEEEecCCCCC
Q 008214          517 VWDHDTFGKD-YMGRCILTLTRVILE--GEYTDCFELDGT--KSGKLKLHLKWMPQPIYRD  572 (573)
Q Consensus       517 V~d~~~~~~d-~lG~~~i~l~~l~~~--~~~~~~~~L~~~--~~G~i~l~l~~~p~~~~~~  572 (573)
                      |+.....+.. .+|.+.|+|.++...  ......++|.+.  ....+++++++.+....++
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~~~  142 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELREDPD  142 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccCCC
Confidence            9887544444 899999999999885  455788888765  4678999999988766554

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.55  E-value=0.03  Score=49.43  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             cceEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC-------------
Q 008214          260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-------------  324 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~-------------  324 (573)
                      ..-.|.++|..++-....-.  .+..+.-..+++. ..+|.++|+.+..+.+|.|+|.|-|.+....             
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            34568888888776543211  1444555555543 3478999999999999999999999986442             


Q ss_pred             CcEEEEEEEeCCCCCCCCceEEEEEEccccCCCcee--EEEEEeeecccccCCCcceeEEEEEEEEeec
Q 008214          325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (573)
Q Consensus       325 ~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~  391 (573)
                      .+.+.+.|...|..+...++|+..+.-..+...+..  .....|....  ...+...|-+.++++..|.
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~--~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG--PESKVPVGILDLRLELLPN  152 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC--CCCccceeEEEEEEEeecC
Confidence            346788888888776778999998888877554433  3333332211  2224588999999999873

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.00  E-value=0.015  Score=63.36  Aligned_cols=90  Identities=24%  Similarity=0.445  Sum_probs=68.5

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC----CeEEeeee-CCCCCceeccE-EEEE-EecCCCcEEEEEEE
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTI-NNDLNPIWNEH-FEFI-VEDESTQHLVVRIY  333 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~~T~~~-~~~~nP~w~e~-f~f~-v~~~~~~~l~i~v~  333 (573)
                      .+.+.|+|+++.-|..++    ...||.|.+-+.+.    +.++|+++ .++.||+|+|+ |.|. |--+.-..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            578999999999998665    34799998853332    34677776 68899999975 6664 33345568999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCc
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGK  358 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~  358 (573)
                      +..    ..+||+-.+|+..|..|-
T Consensus       778 eEg----gK~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  778 EEG----GKFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             ccC----CceeeeeccchhcccCcc
Confidence            976    369999999999998764

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.99  E-value=0.098  Score=52.77  Aligned_cols=113  Identities=13%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEec-------cCCCCEEEEEEEeCCC
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE-------DGLHDMLIAEVWDHDT  522 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~-------~~~~~~L~i~V~d~~~  522 (573)
                      +.|.|.+|++++...   ...-.+..++++  ....|..+..+..|.||..+.+.+.       ...+..|++++|..+.
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng--~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~   76 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNG--ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG   76 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCC--ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence            568899999998752   335678888877  6778889899999999999998875       2245689999998873


Q ss_pred             C--CCceeEEEEEEccee---eec--CeEeEEEEcCCC------CCeEEEEEEEEEec
Q 008214          523 F--GKDYMGRCILTLTRV---ILE--GEYTDCFELDGT------KSGKLKLHLKWMPQ  567 (573)
Q Consensus       523 ~--~~d~lG~~~i~l~~l---~~~--~~~~~~~~L~~~------~~G~i~l~l~~~p~  567 (573)
                      .  .++.+|.+.++|...   ..+  .....||+|-+.      .+-+|.+.+.....
T Consensus        77 ~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~  134 (340)
T PF12416_consen   77 STGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD  134 (340)
T ss_pred             CCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence            2  347999999999988   333  344789999765      35677777766543

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.45  E-value=0.11  Score=47.55  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=62.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec--c-CCCCEEEEEEEeC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH  520 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~d~  520 (573)
                      ..++|+++.+.++...  ....+-||++.+-++.+    ...|+.+..+.++.|||.++|++.  + |....|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            4688999999999862  23456788876632222    335655555678999999999764  3 4667999999986


Q ss_pred             CCCC----------------C-ceeEEEEEEccee
Q 008214          521 DTFG----------------K-DYMGRCILTLTRV  538 (573)
Q Consensus       521 ~~~~----------------~-d~lG~~~i~l~~l  538 (573)
                      ....                + ..||.+.++|-+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            4321                1 3799999999764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.29  E-value=0.13  Score=46.04  Aligned_cols=87  Identities=16%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec--c-CCCCEEEEEEEeC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH  520 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~d~  520 (573)
                      ..++|+++++.++...   ..+|-||++.+-++.+    ...|+.+.. .++.|||-.+|++.  + |.+..|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            4688999999998764   3457899887743222    224444443 68999999999775  2 4667999999986


Q ss_pred             CCCC----C-ceeEEEEEEccee
Q 008214          521 DTFG----K-DYMGRCILTLTRV  538 (573)
Q Consensus       521 ~~~~----~-d~lG~~~i~l~~l  538 (573)
                      ....    . ..+|.++++|-+.
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            5421    2 3699999999763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.06  E-value=1.6  Score=38.27  Aligned_cols=121  Identities=13%  Similarity=0.206  Sum_probs=74.2

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeee-CCCCCceeccEEEEEEec--------CCCcEEEEEE
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVED--------ESTQHLVVRI  332 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~-~~~~nP~w~e~f~f~v~~--------~~~~~l~i~v  332 (573)
                      =.+.++|.+..+++.    ....-|++...+.......+|+.. ..+-.-.|||+|.+.+.-        .....+.|.|
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            356788888888875    122234444333111102334333 345567999999887642        1234688999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCC--ceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~  392 (573)
                      +.....++...+|.+.++|.+....  .....-+.|.+      .......+++.+.+.+..
T Consensus        83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR  138 (143)
T ss_pred             EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence            9875433346999999999998664  34445555532      235667888888887643

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.99  E-value=0.56  Score=42.05  Aligned_cols=89  Identities=17%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC---eEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD  335 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~  335 (573)
                      ..++|+|+++.++.-.   ..+|-|+.+.+-..+..   ...|+.+.. .++.|||...|.+.  +. ....|.|.+|+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            4678999999998754   34678888766421111   123443333 67999999888764  32 456899999997


Q ss_pred             CCCC----CCCceEEEEEEcccc
Q 008214          336 EGIQ----SSELIGCAQVRLCEL  354 (573)
Q Consensus       336 ~~~~----~d~~lG~~~i~l~~l  354 (573)
                      ....    ....+|.+.++|-+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            6421    224699999998763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.52  E-value=0.091  Score=57.65  Aligned_cols=90  Identities=27%  Similarity=0.384  Sum_probs=68.9

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-----cceeEeecccCC-CCCCeeee-EEEEE-eccCCCCEEEEE
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-----SETRNKTRVVND-CLNPIWNQ-TFDFV-VEDGLHDMLIAE  516 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~~kT~~~~~-t~nP~wne-~f~f~-v~~~~~~~L~i~  516 (573)
                      ...+.+.|+|++|.-|..++.    ..||.|.+.+     ..+.++|+++.+ +.||+|+| .|.|. |--|.-..|.|.
T Consensus       700 vIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia  775 (1189)
T KOG1265|consen  700 VIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA  775 (1189)
T ss_pred             eEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence            557899999999999976543    4899999854     124578887754 78999995 47774 334456789999


Q ss_pred             EEeCCCCCCceeEEEEEEcceeeec
Q 008214          517 VWDHDTFGKDYMGRCILTLTRVILE  541 (573)
Q Consensus       517 V~d~~~~~~d~lG~~~i~l~~l~~~  541 (573)
                      ||+...   .++|+-.+|+..+..+
T Consensus       776 vyeEgg---K~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  776 VYEEGG---KFIGQRILPVDGLNAG  797 (1189)
T ss_pred             eeccCC---ceeeeeccchhcccCc
Confidence            999864   6999999999987544

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.50  E-value=0.33  Score=38.37  Aligned_cols=84  Identities=20%  Similarity=0.200  Sum_probs=58.5

Q ss_pred             CCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEE
Q 008214          469 ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCF  548 (573)
Q Consensus       469 ~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (573)
                      .+..+.+.+.+ ....+|.-. ...+..|++.|.+.+.  .+..|+|.|+-+|.  +.+.|...+.|.+..      +.+
T Consensus         9 ~eV~avLklDn-~~VgqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~--RslCav~~lrLEd~~------~~~   76 (98)
T cd08687           9 SEVSAVLKLDN-TVVGQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW--RSLCAVKFLKLEDER------HEV   76 (98)
T ss_pred             cceEEEEEEcC-eEEeecccc-ccccccccceeEEEee--cccEEEEEEEEecc--hhhhhheeeEhhhhc------ccc
Confidence            56677777764 345566653 3468899999999987  36789999998875  457777778888731      123


Q ss_pred             EcCCCCCeEEEEEEEE
Q 008214          549 ELDGTKSGKLKLHLKW  564 (573)
Q Consensus       549 ~L~~~~~G~i~l~l~~  564 (573)
                      .+.-.++|.+..++.|
T Consensus        77 ~~~lepqg~l~~ev~f   92 (98)
T cd08687          77 QLDMEPQLCLVAELTF   92 (98)
T ss_pred             eeccccccEEEEEEEe
Confidence            3333457888888877

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.41  E-value=0.28  Score=44.06  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=61.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH  520 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~  520 (573)
                      ..++|.++...+.... .....+-||++.+-.+.+    ...|.....+.++.|||..+|++.   -|.+..|.|.||+.
T Consensus         8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            4577888888887651 123456777776632222    234444444478999999999864   24667999999997


Q ss_pred             CCCC--C-ceeEEEEEEccee
Q 008214          521 DTFG--K-DYMGRCILTLTRV  538 (573)
Q Consensus       521 ~~~~--~-d~lG~~~i~l~~l  538 (573)
                      ...+  + ..||.+.++|-+.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            6554  2 4899999999774

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.22  E-value=0.2  Score=44.94  Aligned_cols=72  Identities=18%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             CCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeCCCCCC-ceeEEEEEEccee
Q 008214          467 GKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV  538 (573)
Q Consensus       467 ~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l  538 (573)
                      ..+|-||++.+-.+.+    ...|+.+.-+..+.|||-.+|++.   -|.+..|.|+|||....++ ..+|.++++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3467788887743222    235666666778999999999875   2466799999999876544 4899999999764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.41  E-value=0.47  Score=43.31  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=48.4

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD  335 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~  335 (573)
                      ..++|+|+++.++...  ....+-|+.+.+-..+.   ....|+...-+.++.|||.+.|.+.  +. ....|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            4678999999999752  23456677765532111   1234555444567999999888764  32 456899999997


Q ss_pred             CC
Q 008214          336 EG  337 (573)
Q Consensus       336 ~~  337 (573)
                      ..
T Consensus        86 ~~   87 (173)
T cd08693          86 SK   87 (173)
T ss_pred             cc
Confidence            53

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.25  E-value=0.39  Score=43.80  Aligned_cols=92  Identities=17%  Similarity=0.231  Sum_probs=64.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccC----CCCCCeeeeEEEEEec---cCCCCEEEE
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVN----DCLNPIWNQTFDFVVE---DGLHDMLIA  515 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~----~t~nP~wne~f~f~v~---~~~~~~L~i  515 (573)
                      ...+.|+|.++.+++........|-|+.+.+-.+.+    ...|+...    -...+.|||-.+|.+.   -|.+..|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            467889999999999876555678899887743222    22343221    1235779999999774   346679999


Q ss_pred             EEEeCCCCC---------C-ceeEEEEEEccee
Q 008214          516 EVWDHDTFG---------K-DYMGRCILTLTRV  538 (573)
Q Consensus       516 ~V~d~~~~~---------~-d~lG~~~i~l~~l  538 (573)
                      .+|+....+         + ..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999865443         2 4899999999774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=92.88  E-value=1.2  Score=35.35  Aligned_cols=86  Identities=21%  Similarity=0.258  Sum_probs=58.7

Q ss_pred             CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCcee
Q 008214          281 GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK  360 (573)
Q Consensus       281 g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~  360 (573)
                      |.++-.+.+.+.  .....+|..... .+..|++.|.+.+.  ....|+|.||-.|-   ..+-|...+.|++...+   
T Consensus         7 ~~~eV~avLklD--n~~VgqT~Wk~~-s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~~~---   75 (98)
T cd08687           7 GCSEVSAVLKLD--NTVVGQTQWKPK-SNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDERHE---   75 (98)
T ss_pred             cccceEEEEEEc--CeEEeecccccc-ccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhhccc---
Confidence            336777888886  245666765433 47889999999987  35689999998764   35677777888773221   


Q ss_pred             EEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          361 DVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       361 ~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                       .-.          .-.+.|.+..+++|
T Consensus        76 -~~~----------~lepqg~l~~ev~f   92 (98)
T cd08687          76 -VQL----------DMEPQLCLVAELTF   92 (98)
T ss_pred             -cee----------ccccccEEEEEEEe
Confidence             111          33567888887776

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.82  E-value=0.7  Score=42.17  Aligned_cols=90  Identities=13%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce---eEeecccCCCCCCeeeeEEEEEec--c-CCCCEEEEEEEeCC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET---RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHD  521 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~---~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~d~~  521 (573)
                      ..++|+|+++. .+..+......-||++.+-.+..   ..+|....-+.+|.|||-.+|++.  + |....|.|.||+..
T Consensus        10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            35778888886 33333233334677765532222   235565556778999999999875  2 45679999999852


Q ss_pred             CC---------------C-C-ceeEEEEEEccee
Q 008214          522 TF---------------G-K-DYMGRCILTLTRV  538 (573)
Q Consensus       522 ~~---------------~-~-d~lG~~~i~l~~l  538 (573)
                      ..               + . ..||.+.+.|-+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEcC
Confidence            11               1 1 3799999998763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.64  E-value=0.71  Score=41.39  Aligned_cols=92  Identities=18%  Similarity=0.214  Sum_probs=58.1

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD  335 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~  335 (573)
                      ..++|++....++...+ ....+-|+.+.+-..+.   ....|.......++.|||...|.+.  +. ....|.|.+|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            34677777777765411 23355666665532111   1233443333468999999888753  22 456899999998


Q ss_pred             CCCC--CCCceEEEEEEcccc
Q 008214          336 EGIQ--SSELIGCAQVRLCEL  354 (573)
Q Consensus       336 ~~~~--~d~~lG~~~i~l~~l  354 (573)
                      +..+  .+..||.+.++|-+-
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            7543  468999999998663

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=92.47  E-value=0.28  Score=47.55  Aligned_cols=117  Identities=18%  Similarity=0.158  Sum_probs=71.9

Q ss_pred             cceEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      ..|+|.++++.+++|.-...  .-.-+-||++....  ....+|.+...+.-=.|.|+|..++..  ...+.+-||+++.
T Consensus        49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr--qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p  124 (442)
T KOG1452|consen   49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR--QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP  124 (442)
T ss_pred             ccceEEEEEecccccccChhccCceeeeeeeeeecc--cCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc
Confidence            57999999999999974322  23458899998751  223344444444445789999988874  3478899999987


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      ..++++.-.-.+.+..+.... .+.-+.|        .-.++|++.+.+.+.
T Consensus       125 q~RHKLC~~g~l~~~~v~rqs-pd~~~Al--------~lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  125 QRRHKLCHLGLLEAFVVDRQS-PDRVVAL--------YLEPRGQPPLRLPLA  167 (442)
T ss_pred             hhhccccccchhhhhhhhhcC-Ccceeee--------ecccCCCCceecccC
Confidence            666665433333333332111 1111222        235678888877654

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=91.59  E-value=2.6  Score=38.78  Aligned_cols=55  Identities=20%  Similarity=0.303  Sum_probs=40.7

Q ss_pred             eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCCC--CCCceEEEEEEcc
Q 008214          298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ--SSELIGCAQVRLC  352 (573)
Q Consensus       298 ~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~~--~d~~lG~~~i~l~  352 (573)
                      .++|-+...+.+|.|+|++.+.+...  ....|.|++++.....  ....+|.+.+||-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            57888899999999999998887643  4568999888754321  1256888777773

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.85  E-value=0.92  Score=40.75  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=50.2

Q ss_pred             CCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeCCCCCCCCceEEEEEEcccc
Q 008214          281 GKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDEGIQSSELIGCAQVRLCEL  354 (573)
Q Consensus       281 g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l  354 (573)
                      ..+|-||.+.+-..+.   ....|+.+.-+..+.|||...|.+.  +. ....|.|.|||.+..+....+|.+.++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3467777776642111   1234554555567889999888864  22 3568999999988655678999999998653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=90.61  E-value=0.49  Score=45.96  Aligned_cols=113  Identities=18%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             ceeeEEEEEEEEeecCCCCCC--CCCCCcEEEEEEcCcceeEeecccCCCCCC--eeeeEEEEEeccCCCCEEEEEEEeC
Q 008214          445 IIRGVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNP--IWNQTFDFVVEDGLHDMLIAEVWDH  520 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP--~wne~f~f~v~~~~~~~L~i~V~d~  520 (573)
                      ..+|+|.+++..+++|.....  .-.-+-||.+....   .+++++...+.+|  .|.|.|+..+-+  ...+.+-||.+
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr---qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW  122 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR---QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSW  122 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecc---cCccccccccCCCCccchhhceeeccc--ceeeeEEEeec
Confidence            457999999999999976432  33468899998763   3444444455555  677888887764  46788899988


Q ss_pred             CCCCCc---eeEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEEE
Q 008214          521 DTFGKD---YMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM  565 (573)
Q Consensus       521 ~~~~~d---~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~~  565 (573)
                      +...+.   ..|  .+.+..+..... ++-+.|.-.+.|++.+.+.+.
T Consensus       123 ~pq~RHKLC~~g--~l~~~~v~rqsp-d~~~Al~lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  123 PPQRRHKLCHLG--LLEAFVVDRQSP-DRVVALYLEPRGQPPLRLPLA  167 (442)
T ss_pred             Cchhhccccccc--hhhhhhhhhcCC-cceeeeecccCCCCceecccC
Confidence            865432   455  344444433222 344555545567777666553

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=90.59  E-value=4  Score=37.72  Aligned_cols=55  Identities=22%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCC-C---CCCceEEEEEEcc
Q 008214          298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-Q---SSELIGCAQVRLC  352 (573)
Q Consensus       298 ~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~-~---~d~~lG~~~i~l~  352 (573)
                      .++|-+...+.+|.|+|++.+.+...  ....|.|.+++.... .   ....+|.+.+||-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            57888888899999999998887543  456899999885421 1   2356888888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.09  E-value=1.1  Score=40.93  Aligned_cols=92  Identities=16%  Similarity=0.224  Sum_probs=59.4

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeC----CCCCceeccEEEEEEe--c-CCCcEEEEE
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTIN----NDLNPIWNEHFEFIVE--D-ESTQHLVVR  331 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~----~~~nP~w~e~f~f~v~--~-~~~~~l~i~  331 (573)
                      ..+.|+|.++.+++........|-|+.+.+-..+.   ....|+...    -...+.|||...|.+.  + +....|.|.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            45789999999998655444577888876642111   112333211    1235779999888764  2 245689999


Q ss_pred             EEeCCCCC---------CCCceEEEEEEccc
Q 008214          332 IYDDEGIQ---------SSELIGCAQVRLCE  353 (573)
Q Consensus       332 v~d~~~~~---------~d~~lG~~~i~l~~  353 (573)
                      +|+....+         .+..||.+.++|-+
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEc
Confidence            99976543         35688888888765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=89.47  E-value=1.9  Score=37.97  Aligned_cols=54  Identities=20%  Similarity=0.194  Sum_probs=39.6

Q ss_pred             eecccCCC-CCCeeeeEEEEEec---cCCCCEEEEEEEeCCCCCC-----ceeEEEEEEccee
Q 008214          485 KTRVVNDC-LNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-----DYMGRCILTLTRV  538 (573)
Q Consensus       485 kT~~~~~t-~nP~wne~f~f~v~---~~~~~~L~i~V~d~~~~~~-----d~lG~~~i~l~~l  538 (573)
                      .|+...-+ .++.|||.++|++.   -|.+..|.|.||+.+....     ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56665555 79999999999874   3467799999998765443     4899999999775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=88.59  E-value=2.7  Score=34.47  Aligned_cols=72  Identities=17%  Similarity=0.209  Sum_probs=48.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeCC
Q 008214          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHD  521 (573)
Q Consensus       450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~~  521 (573)
                      +.+.+..+++.........++-||++.+-++.+    ...|..+.-...+.|||-.+|++.   -|.+..|.|.||+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            556677777776544333357888887743222    234555555667999999999765   346679999999864

Outlier of C2 family.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=87.94  E-value=5  Score=36.97  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=42.9

Q ss_pred             eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCC--C-ceeEEEEEEcce
Q 008214          482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K-DYMGRCILTLTR  537 (573)
Q Consensus       482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~--~-d~lG~~~i~l~~  537 (573)
                      ..++|.+...+.+|.|+|++.+.+...  .+..|.++++......  . ..+|.+.++|-+
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            357888889999999999999988633  5568889887754432  2 479999999854

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=87.68  E-value=1.9  Score=39.83  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=34.4

Q ss_pred             eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCCCC---CCceEEEEEEccc
Q 008214          298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS---SELIGCAQVRLCE  353 (573)
Q Consensus       298 ~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~~~---d~~lG~~~i~l~~  353 (573)
                      .+.|.+..++.+|.|+|+|.+.+...  ....|.|.+++.....+   +..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            46778888889999999999988654  45689999999764221   2689999999876

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=86.86  E-value=3.8  Score=37.47  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=42.4

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC---eEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeCC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDE  336 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~~  336 (573)
                      .++|+|.++..+ +.+......-||++.+-. +++   ..+|....-+.++.|||...|.+.  +. ....|.|.||+..
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            467788877633 222122223455554321 122   124555555678999998888764  32 4568999999974

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=85.02  E-value=10  Score=33.30  Aligned_cols=55  Identities=18%  Similarity=0.388  Sum_probs=39.2

Q ss_pred             EeeeeCCC-CCceeccEEEEEEe--c-CCCcEEEEEEEeCCCCCCC----CceEEEEEEcccc
Q 008214          300 KSKTINND-LNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL  354 (573)
Q Consensus       300 ~T~~~~~~-~nP~w~e~f~f~v~--~-~~~~~l~i~v~d~~~~~~d----~~lG~~~i~l~~l  354 (573)
                      .|+...-+ .++.|||...|.+.  + +....|.|.||+.+....+    ..||.+.++|-+-
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            45555444 79999999888864  3 3466899999998765444    6899999998664

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=84.42  E-value=10  Score=35.06  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=42.3

Q ss_pred             eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCC--C---ceeEEEEEEcc
Q 008214          482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K---DYMGRCILTLT  536 (573)
Q Consensus       482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~--~---d~lG~~~i~l~  536 (573)
                      ..++|.+.....+|.|+|++.+.+...  .+..|.++++......  +   ..+|.+.++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            467888888999999999999988632  5668999998754321  1   36999999986

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=81.78  E-value=5.4  Score=36.78  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=35.1

Q ss_pred             eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCC--C--ceeEEEEEEcce
Q 008214          482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K--DYMGRCILTLTR  537 (573)
Q Consensus       482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~--~--d~lG~~~i~l~~  537 (573)
                      ..+.|.+...+.+|.|+|+|.+.+...  .+..|.|++++.....  +  ..+|.+.++|.+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            456788888899999999999988744  4568999999866532  1  489999999987

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=81.11  E-value=30  Score=31.35  Aligned_cols=70  Identities=20%  Similarity=0.336  Sum_probs=51.7

Q ss_pred             CCCcEEEEEEecCCCCeEEeeeeC--CCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccC
Q 008214          282 KSDPYAVLFVRPLPEKTKKSKTIN--NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE  355 (573)
Q Consensus       282 ~~dpyv~v~~~~~~~~~~~T~~~~--~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~  355 (573)
                      +..-|+++.+.  ++...+|+...  .+..-.|+|.|.+.+... -..|.++||.... ..+..|+.+.+|+-...
T Consensus        36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence            34568888886  34566666543  333457789999998764 3589999999887 67899999999987653

>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]

Probab=80.18  E-value=0.56  Score=51.30  Aligned_cols=89  Identities=16%  Similarity=0.290  Sum_probs=72.7

Q ss_pred             cchHHHHHHHHhhChhhHHH--HHHHHHHhHHHHHhhhC-CCccceEEEeEEecCCCCceEeEEEEEEc-CCCeEEEEEe
Q 008214           69 QKLTWLNHHLEKLWPYVNEA--ASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE  144 (573)
Q Consensus        69 E~~~WlN~~l~~~Wp~~~~~--~~~~~~~~~~~~l~~~~-p~~l~~i~~~~~~lG~~pP~i~~i~~~~~-~~~~~~le~~  144 (573)
                      +.+-|||.++.++..-+.+.  ..+..++.++.++...+ |+++..+-..+++-|..||.|++-++... ..+...++.|
T Consensus       334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d  413 (795)
T KOG2238|consen  334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID  413 (795)
T ss_pred             hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence            45889999999998766554  66777888888888764 78999999999999999999999999877 3455578899


Q ss_pred             eEEecCcceEEEE
Q 008214          145 MQWDANSSIILAI  157 (573)
Q Consensus       145 ~~~~~~~~i~l~~  157 (573)
                      +.|.||..+.++.
T Consensus       414 i~y~~d~~~~i~~  426 (795)
T KOG2238|consen  414 IEYRGDLTIIIET  426 (795)
T ss_pred             eeecccccccccc
Confidence            9999987655554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	573
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-09
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-09
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		6e-09
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		1e-05
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		7e-09
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		9e-09
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		2e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-08
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		1e-05
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		2e-08
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		1e-05
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		2e-08
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		2e-08
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-08
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		3e-08
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		7e-08
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		7e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		8e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		3e-06
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		3e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		7e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		4e-05
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		8e-07
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		5e-05
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		3e-06
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		1e-05
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		3e-06
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		1e-05
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		3e-06
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		1e-05
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		3e-06
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		1e-05
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		4e-06
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		1e-05
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		5e-06
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		7e-06
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		6e-06
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		7e-06
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		8e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		8e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		8e-05
3pyc_A	132	Crystal Structure Of Human Smurf1 C2 Domain Length		2e-05
2jqz_A	131	Solution Structure Of The C2 Domain Of Human Smurf2		2e-05
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		2e-05
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-05
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-04
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		5e-05
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		5e-05

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 436 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 487
           D +++R  + I     R VL V V  A+NL   D  G +DPYV L +    KSE++ KT+
Sbjct: 155 DHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 214
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMG 529
            +   LNP WN+TF F +++   D  L  E+WD D T   D+MG
Sbjct: 215 TIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 258

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 436 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 487
           D+ ++R  + I     R VL V V  A+NL   D  G +DPYV L +    KSE++ KT+
Sbjct: 14  DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMG 529
            +   LNP WN+TF F +++   D  L  E+WD D T   D+MG
Sbjct: 74  TIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 117

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 82  VM-DETLGTATFTVSSMKVG 100

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 522
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D + 
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 523 FGKDYMGRCILTLTRV 538
              + +G    T++ +
Sbjct: 82  VMDETLGTATFTVSSM 97

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 428 TEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTR 487
           TE  + EK    + ++    G L V VI A  L A    GK++PY  ++M        TR
Sbjct: 367 TEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISM--GSQSYTTR 424
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRVILEGE 543
            + D LNP WN    F ++D   D+L   ++D D F   D++GR  + + ++  E E
Sbjct: 425 TIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQE 481

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 97  VM-DETLGTATFTVSSMKVG 115

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 522
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D + 
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 523 FGKDYMGRCILTLTRV 538
              + +G    T++ +
Sbjct: 97  VMDETLGTATFTVSSM 112

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           P GTLEV LV AKGL + D +   DPY  L  R   +K+  ++ +     P WNE F F 
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT--TPEWNETFIFT 65
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYR 379
           V  E T  L  +I+D +     + +G A +    LEP                 +D +Y+
Sbjct: 66  VS-EGTTELKAKIFDKDVGTEDDAVGEATIP---LEP--VFVEGSIPPTAYNVVKDEEYK 119
Query: 380 GQVHLELLYCPFG 392
           G++ + L + P G
Sbjct: 120 GEIWVALSFKPSG 132

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLN--PIWNQTFDFV 504
            G L V ++ A+ L  +D +   DPYV LT +   T+++   V + +   P WN+TF F 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 505 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 542
           V +G  + L A+++D D   + D +G   + L  V +EG
Sbjct: 66  VSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 97  VM-DETLGTATFTVSSMKVG 115

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 522
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D + 
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 523 FGKDYMGRCILTLTRV 538
              + +G    T++ +
Sbjct: 97  VMDETLGTATFTVSSM 112

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           + VTV  A NL   D  G +DPYV L +    ++ T+ KTR V   LNP+WN+TF F ++
Sbjct: 22  IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 507 DG-LHDMLIAEVWDHD-TFGKDYMG 529
            G +   L  EVWD D T   D+MG
Sbjct: 82  PGDVERRLSVEVWDWDRTSRNDFMG 106

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 507 DGLHD-MLIAEVWDHD-TFGKDYMGRCILTLTRVI 539
               D  L  E+WD D T   D+MG     ++ ++
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 112

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 507 DGLHD-MLIAEVWDHD-TFGKDYMGRCILTLTRVI 539
               D  L  E+WD D T   D+MG     ++ ++
Sbjct: 79  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 113

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 508 GLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 538
            +HD+L   V+D D     D++G+  + L  +
Sbjct: 71  -IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 507 DGLHD-MLIAEVWDHD-TFGKDYMG 529
               D  L  E+WD D T   D+ G
Sbjct: 80  PSDKDRRLSVEIWDWDRTTRNDFXG 104

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           +S+TV+ A+ L A D  G +DPYV + + K++ R KT   N  LNP+W + F F   +  
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN--LNPVWEENFHFECHNS- 75
Query: 510 HDMLIAEVWDHDTFGK------------DYMGRCILTLTRVILEGEYTDCFELD-----G 552
            D +   V D D   K            D++G+ I+ +    L GE    + LD      
Sbjct: 76  SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR--TLSGEMDVWYNLDKRTDKS 133
Query: 553 TKSGKLKLHL 562
             SG ++LH+
Sbjct: 134 AVSGAIRLHI 143

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFI 319
           L VK+V    L  KD+ G SDPY  L +    E  +    ++KTI   LNP WNE F F 
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDT 376
           V + S   L+  ++D+  +   + +G   V L  L   +P                   +
Sbjct: 83  V-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKS 141
Query: 377 KYRGQVHLELLYCP 390
           + +G + L++ Y P
Sbjct: 142 RVKGFLRLKMAYMP 155

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRN----KTRVVNDCLNPIWNQTFDF 503
           +L V V+   +L   D+ G +DPYV L++    E R     +T+ +   LNP WN+ F F
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 504 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV-----ILEGEYTDCFELDGTKS-- 555
            V    H +L  EV+D +   + D++G+  + L+ +      +E  YT    L   +S  
Sbjct: 82  RVNPSNHRLLF-EVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHK 140
Query: 556 ----GKLKLHLKWMP 566
               G L+L + +MP
Sbjct: 141 SRVKGFLRLKMAYMP 155

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTF---DF 503
             L+V ++ A+ LPA D  G +DP+V +  +   + + +T+V    LNP WN+TF    F
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 504 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 540
             E  +  +L  +V D+D F + D +G   + L +V L
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
           ++S L  +    L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  N
Sbjct: 19  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
           P+WNE  ++     ED   + L + + D++    +E IG  +  L +L+
Sbjct: 79  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 503
           L  T+I A+ L   D  G ADPYV L +    +++   +T+ + +  NP+WN+T  +   
Sbjct: 31  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 504 VVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 538
             ED     L   V D D FG  +++G    +L ++
Sbjct: 91  TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
           ++S L  +    L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  N
Sbjct: 17  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           P+WNE  ++     ED   + L + + D++    +E IG  +  L +L+  
Sbjct: 77  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKAN 127

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 503
           L  T+I A+ L   D  G ADPYV L +    +++   +T+ + +  NP+WN+T  +   
Sbjct: 29  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 504 VVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 538
             ED     L   V D D FG  +++G    +L ++
Sbjct: 89  TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 506 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 538
           E G   +++A V+D D F K D +G   + +  V
Sbjct: 104 ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 136

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 506 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 538
           E G   +++A V+D D F K D +G   + +  V
Sbjct: 96  ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 128

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 506 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 538
           E G   +++A V+D D F K D +G   + +  V
Sbjct: 96  ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 128

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           + + + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 506
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 507 DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 538
           +     L+  V+D D F K D +G   + +  V
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 114

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 506 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 538
           E G   +++A V+D D F K D +G   + +  V
Sbjct: 79  ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 111

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
           ++S   L   G L V +++A  L   DL G SDPY  A L       K +K+    N LN
Sbjct: 143 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 202
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
           P +NE   F V  ES ++  L + + D + I  +E+IG  +V
Sbjct: 203 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 502
           G+L+VT+I A NL A DL G +DPYV   +++  +   + KT +  + LNP +N+   FD
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 503 FVVEDGLHDMLIAEVWDHDTFG-KDYMGRC 531
              E   +  L   V D+D  G  + +G C
Sbjct: 213 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 242

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
           ++S   L   G L V +++A  L   DL G SDPY  A L       K +K+    N LN
Sbjct: 142 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 201
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
           P +NE   F V  ES ++  L + + D + I  +E+IG  +V
Sbjct: 202 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 502
           G+L+VT+I A NL A DL G +DPYV   +++  +   + KT +  + LNP +N+   FD
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 503 FVVEDGLHDMLIAEVWDHDTFG-KDYMGRC 531
              E   +  L   V D+D  G  + +G C
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 241

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV------------VLTMKKSETRNKTRVVNDCLNP 495
           G L + ++ A NL   D  G +DP+V            V+    +E + +T+ V   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 496 IWNQTFDF---VVEDGLHDMLIAEVWDHDTF-GKDYMGRCILTLT 536
            WNQT  +    +E  +   L   VWD+D F   D++G  ++ L+
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
           + V+++   GL  KD++G SDPY  V    P+     + ++KTI   LNP WNE   F V
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDTK 377
             +    L+  ++D+  +   + +G   V L  L    P                   ++
Sbjct: 82  HPQQ-HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140
Query: 378 YRGQVHLELLYCP 390
            +G + L++ Y P
Sbjct: 141 VKGYLRLKMTYLP 153

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 449 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 504
           ++ V VI    L   D++G +DPYV +T    M    T  +T+ +   LNP WN+   F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 505 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 535
           V    H +L  EV+D +   + D++G+  + L
Sbjct: 81  VHPQQHRLLF-EVFDENRLTRDDFLGQVDVPL 111

>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           + +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  V  G 
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV--GK 64
Query: 510 HDMLIAEVWDHDTF----GKDYMGRCILTLTRVI 539
            D +   VW+H       G  ++G C+  L+  I
Sbjct: 65  TDSITISVWNHKKIHKKQGAGFLG-CVRLLSNAI 97

>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  +  G 
Sbjct: 5   LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYI--GK 62
Query: 510 HDMLIAEVWDHDTF----GKDYMGRCILTLTRVILEGEYTDCFELDGTKSG 556
            D +   VW+H       G  ++G C+  L+  I   + T    LD  K G
Sbjct: 63  SDSVTISVWNHKKIHKKQGAGFLG-CVRLLSNAINRLKDTGYQRLDLCKLG 112

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTF-- 501
           +G L V +I   +L A D  G +DP+V L +K     + ++KT++    LNP +N+ F  
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 502 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 536
           D    D     L   VWD+D  GK  DY+G C L ++
Sbjct: 96  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
           + VK++   GL  KD++G SDPY  V    P+     + ++KTI   LNP WNE   F V
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDTK 377
             +    ++  ++D+  +   + +G   V L  L    P                   ++
Sbjct: 70  LPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128
Query: 378 YRGQVHLELLYCP 390
            +G + L++ Y P
Sbjct: 129 VKGYLRLKMTYLP 141

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 449 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 504
           V+ V VI    L   D++G +DPYV +T    M    T  +T+ +   LNP WN+   F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 505 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 535
           V    H +L  EV+D +   + D++G+  + L
Sbjct: 69  VLPQRHRILF-EVFDENRLTRDDFLGQVDVPL 99

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 501
           +G L V +I   +L A D  G +DP+V L +K     + ++KT++    LNP +N+ F  
Sbjct: 36  QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 502 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 536
           D    D     L   VWD+D  GK  DY+G C L ++
Sbjct: 96  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 501
           +G L V +I   +L A D  G +DP+V L +K     + ++KT++    LNP +N+ F  
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 502 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 536
           D    D     L   VWD+D  GK  DY+G C L ++
Sbjct: 74  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	573
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-40
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	8e-32
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	8e-40
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	7e-27
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	4e-37
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-28
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-36
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-27
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-36
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-32
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-35
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-31
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-35
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-18
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-15
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-33
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-17
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-32
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-24
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-30
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-21
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-29
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	9e-27
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	4e-28
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	6e-27
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	5e-27
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-26
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	6e-27
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	4e-21
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-24
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-22
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	8e-24
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	4e-21
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-23
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-23
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-23
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	8e-23
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-23
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-18
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	8e-23
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	6e-22
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-22
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-19
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-22
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-22
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	5e-22
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-17
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	6e-22
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-17
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-20
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-17
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-20
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	7e-19
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-20
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-17
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-20
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-17
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-19
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-16
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-19
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-18
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-19
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-19
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	9e-19
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-19
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-17
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-19
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	5e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	4e-19
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-15
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	8e-19
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	8e-12
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-18
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-17
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-18
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-18
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-12
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	6e-08
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	5e-12
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	3e-11
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	3e-09
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	2e-06
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	1e-07
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	6e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	2e-07
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	9e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  141 bits (358), Expect = 3e-40
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
            P GTLEV LV AKGL + D +   DPY  L  R   +  K +        P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR--TQDQKSNVAEGMGTTPEWNETFIF 64

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTK 377
            V + +T+ L  +I+D +     + +G A + L  +   G +      +VK      D +
Sbjct: 65  TVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEE 117

Query: 378 YRGQVHLELLYCPFGMEN 395
           Y+G++ + L + P G  +
Sbjct: 118 YKGEIWVALSFKPSGPSS 135

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  118 bits (298), Expect = 8e-32
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVE 506
           G L V ++ A+ L  +D +   DPYV LT +      K+ V       P WN+TF F V 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 507 DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL---DGTKSGKLKLHL 562
           +G    L A+++D D   + D +G   + L  V +EG           D    G++ + L
Sbjct: 68  EG-TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126

Query: 563 KWMP 566
            + P
Sbjct: 127 SFKP 130

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  142 bits (359), Expect = 8e-40
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPI 311
           EL       + VK++   GL  KD++G SDPY  + +         + ++KTI   LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60

Query: 312 WNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           WNE   F V  +    ++  ++D+  +   + +G   V L  L     +       KD  
Sbjct: 61  WNEEILFRVLPQ-RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119

Query: 372 VQRDT---KYRGQVHLELLYCPF 391
           +   +   + +G + L++ Y P 
Sbjct: 120 LHPRSHKSRVKGYLRLKMTYLPK 142

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  106 bits (266), Expect = 7e-27
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 17/136 (12%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 503
            V+ V VI    L   D++G +DPYV +T+        T  +T+ +   LNP WN+   F
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 504 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL-----------D 551
            V       ++ EV+D +   + D++G+  + L  +  E    +                
Sbjct: 68  RVLP-QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126

Query: 552 GTKSGKLKLHLKWMPQ 567
               G L+L + ++P+
Sbjct: 127 SRVKGYLRLKMTYLPK 142

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  134 bits (338), Expect = 4e-37
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 244 KIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKK 300
             V  L  D      +    + V+++   GL  KD++G SDPY  + +         + +
Sbjct: 7   VEVFGLLEDE-----ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ 61

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +KTI   LNP WNE   F V  +    L+  ++D+  +   + +G   V L  L     +
Sbjct: 62  TKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120

Query: 361 DVWLKLVKDLDVQ---RDTKYRGQVHLELLYCP 390
                  KD  +      ++ +G + L++ Y P
Sbjct: 121 LERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  109 bits (275), Expect = 2e-28
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 17/135 (12%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 503
            ++ V VI    L   D++G +DPYV +T+        T  +T+ +   LNP WN+   F
Sbjct: 20  RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79

Query: 504 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL-----------D 551
            V       L+ EV+D +   + D++G+  + L  +  E    +                
Sbjct: 80  RVHP-QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK 138

Query: 552 GTKSGKLKLHLKWMP 566
               G L+L + ++P
Sbjct: 139 SRVKGYLRLKMTYLP 153

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  131 bits (331), Expect = 3e-36
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
           G L V +  A  +  K   GK DP   +  +    + KK+K ++N+LNP+WNE  EF + 
Sbjct: 7   GMLRVIVESASNI-PKTKFGKPDPIVSVIFKD---EKKKTKKVDNELNPVWNEILEFDLR 62

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 378
               + +  L + + D E I  ++LIG A V L +L   + + +  KL+  L+ ++    
Sbjct: 63  GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDT 121

Query: 379 RGQVHLELLYCP 390
              + L + Y P
Sbjct: 122 GATIDLVIGYDP 133

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  106 bits (266), Expect = 3e-27
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV-- 505
           G+L V V  A N+P     GK DP V +  K    + KT+ V++ LNP+WN+  +F +  
Sbjct: 7   GMLRVIVESASNIPK-TKFGKPDPIVSVIFKD--EKKKTKKVDNELNPVWNEILEFDLRG 63

Query: 506 -EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL-------DGTKSG 556
                   L   V D +T G+   +G   + L  +  +   +  ++L             
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGA 123

Query: 557 KLKLHLKWMP 566
            + L + + P
Sbjct: 124 TIDLVIGYDP 133

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  130 bits (328), Expect = 5e-36
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
           S  ++K VG L+VK+++A  L   D  GKSDP+ +L +        ++ T+  +LNP WN
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWN 61

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373
           + F F ++D     L V ++D++G +  + +G   + L  +  G+     LK        
Sbjct: 62  KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL---- 116

Query: 374 RDTKYRGQVHLELLYC 389
            +  ++G ++LE+   
Sbjct: 117 -EQAFKGVIYLEMDLI 131

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  120 bits (304), Expect = 1e-32
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 7/122 (5%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGND--RLQTHTVYKNLNPEWNKVFTFPIKD 70

Query: 508 GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYT---DCFELDGTKSGKLKLHLK 563
            +HD+L   V+D D     D++G+  + L  +             +L+    G + L + 
Sbjct: 71  -IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

Query: 564 WM 565
            +
Sbjct: 130 LI 131

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  129 bits (325), Expect = 1e-35
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 264 LEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
             V +++A  +T     D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI+
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
           +      L + + D   +   E +G A   +  ++ G+ K+V            +     
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF--------NQVTEM 115

Query: 381 QVHLELLYC 389
            + + L   
Sbjct: 116 VLEMSLEVA 124

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  116 bits (293), Expect = 3e-31
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 448 GVLSVTVILAENL---PASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDF 503
              +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +NP+WN+TF+F
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 504 VVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLK 563
           +++    ++L   + D +    + +G    T++ + +  +    F  +      L++ L+
Sbjct: 63  ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 122

Query: 564 W 564
            
Sbjct: 123 V 123

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  134 bits (338), Expect = 1e-35
 Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 65/280 (23%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78

Query: 322 DE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
               + + LV+ +YD +     ++I                                   
Sbjct: 79  YSELAGKTLVMAVYDFDRFSKHDII----------------------------------- 103

Query: 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQ 439
           G+  + +    FG                                    E  E   D   
Sbjct: 104 GEFKVPMNTVDFGHVTEEWRDLQSA----------------------EKEEQEKLGDICF 141

Query: 440 KRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPI 496
             R V   G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +  + LNP 
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201

Query: 497 WNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 533
           +N++F F V  E      ++  V D+D  GK D +G+  +
Sbjct: 202 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 85.6 bits (212), Expect = 1e-18
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V +I A  LPA D+ G +DPYV +  +   + + +T+V    LNP++N+ F F V
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77

Query: 506 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKS------G 556
              +     L+  V+D D F K D +G   + +  V       +  +L   +       G
Sbjct: 78  PYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLG 137

Query: 557 KLKLHLKWMPQ 567
            +   L+++P 
Sbjct: 138 DICFSLRYVPT 148

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT    N LNP +NE F F 
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373
           V  E      +VV + D + I  ++ IG  +V +     G     W  ++ +    
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG--KVFVGYNSTGAELRHWSDMLANPRRP 263

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  128 bits (323), Expect = 2e-33
 Identities = 67/279 (24%), Positives = 106/279 (37%), Gaps = 62/279 (22%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V+++QA  L  KD  G SDPY  +++ P  +K  ++K     LNPI+NE F+F   
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF--- 76

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL-VKDLDVQRDTKYRG 380
                                           +   ++    L   V D D        G
Sbjct: 77  -------------------------------SVPLAELAQRKLHFSVYDFDRFSRHDLIG 105

Query: 381 QVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQK 440
           QV L+ L                      L + +  G    +    G     L    +  
Sbjct: 106 QVVLDNLLELAEQP-----------PDRPLWRDILEGGS--EKADLGELNFSLCYLPT-- 150

Query: 441 RREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIW 497
                  G+L+VT+I A NL A DL G +DPYV  ++    +   + KT +  + LNP +
Sbjct: 151 ------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204

Query: 498 NQTFDF-VVEDGLHDM-LIAEVWDHDTFGK-DYMGRCIL 533
           N+   F V  + + ++ L   V D+D  G  + +G C +
Sbjct: 205 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V ++ A +LPA D  G +DPYV +  +   + + +T+V    LNPI+N+TF F V
Sbjct: 19  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78

Query: 506 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD-------GTKS 555
              +     L   V+D D F + D +G+ +L     + E         D           
Sbjct: 79  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADL 138

Query: 556 GKLKLHLKWMPQ 567
           G+L   L ++P 
Sbjct: 139 GELNFSLCYLPT 150

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  131 bits (331), Expect = 2e-32
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 248 ILPGDYSELELKPVGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTI 304
           I P  +  +E +      V +++A  +T     D++   DPY  LF+   P+  K+++  
Sbjct: 4   IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63

Query: 305 NNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWL 364
           NND+NP+WNE FEFI++      L + + D   +   E +G A   +  ++ G+ K+V  
Sbjct: 64  NNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPF 122

Query: 365 KL--VKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 406
               V ++ ++   +      L         E  F      +  
Sbjct: 123 IFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIR 166

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  106 bits (265), Expect = 3e-24
 Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 439 QKRREVIIRGVLSVTVILAENL---PASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLN 494
               E       +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +N
Sbjct: 9   HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68

Query: 495 PIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTK 554
           P+WN+TF+F+++    ++L   + D +    + +G    T++ + +  +    F  +   
Sbjct: 69  PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 128

Query: 555 SGKLKLHLKWMPQPIYRD 572
              L++ L+    P  R 
Sbjct: 129 EMVLEMSLEVCSCPDLRF 146

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  114 bits (288), Expect = 3e-30
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 17/151 (11%)

Query: 417 GEKALKSGANGTEAIELEKDASQKRREVII-----RGVLSVTVILAENLPASDLMGKADP 471
           G   +  G  G        D+ ++R  + I     R VL V V  A+NL   D  G +DP
Sbjct: 1   GSPGISGGGGG------ILDSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDP 54

Query: 472 YVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHDTFGK-D 526
           YV L +    KSE++ KT+ +   LNP WN+TF F +++   D  L  E+WD D   + D
Sbjct: 55  YVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRND 114

Query: 527 YMGRCILTLTRVILEGEYTDCFELDGTKSGK 557
           +MG     ++ +   G     F+L   + G+
Sbjct: 115 FMGSLSFGISELQKAGV-DGWFKLLSQEEGE 144

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 90.5 bits (225), Expect = 1e-21
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V +  AK L   D  G SDPY  L + P P+    +K+KTI   LNP WNE F F 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 320 V-EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369
           + E +  + L V I+D +    ++ +G     + EL+   V   W KL+  
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG-WFKLLSQ 140

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  111 bits (279), Expect = 3e-29
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           + +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  V    
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-- 64

Query: 510 HDMLIAEVWDHDTFGKD----YMGRCILTLTRVILEGEYTDCFELDGTK---------SG 556
            D +   VW+H    K     ++G   L     I   + T    LD  K          G
Sbjct: 65  TDSITISVWNHKKIHKKQGAGFLGCVRLLS-NAISRLKDTGYQRLDLCKLNPSDTDAVRG 123

Query: 557 KLKLHLKW 564
           ++ + L+ 
Sbjct: 124 QIVVSLQT 131

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  104 bits (261), Expect = 9e-27
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           + + ++ AK L  KD     DP+A + V     +   + T+ N L+P WN+H++  V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYVGKT 65

Query: 324 STQHLVVRIYDDEGI---QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
               + + +++ + I   Q +  +GC ++    +   K        +  L+       RG
Sbjct: 66  --DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRG 123

Query: 381 QVHLELLY 388
           Q+ + L  
Sbjct: 124 QIVVSLQT 131

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  109 bits (274), Expect = 4e-28
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
           S   L     L++ ++ AK   NK       PY  + V     ++KK++  NN  +P W 
Sbjct: 28  SMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWK 84

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDL 370
           +    IV   S   L  R++  + ++S  L+G A + + E       K+++V + L    
Sbjct: 85  QPLTVIVTPVSK--LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 142

Query: 371 DVQRDTKYRGQVHLEL 386
           D +  T+  G + + L
Sbjct: 143 D-KEPTETIGDLSICL 157

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  106 bits (266), Expect = 6e-27
 Identities = 31/133 (23%), Positives = 45/133 (33%), Gaps = 15/133 (11%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           +  L +TVI A+            PYV +T+       KT   N+  +P W Q    +V 
Sbjct: 35  KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSK--KTEKCNNTNSPKWKQPLTVIVT 92

Query: 507 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEG-----EYTDCFELDGTKS----- 555
                 L   VW H T   D  +G   L +   +        E     +L G K      
Sbjct: 93  P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 150

Query: 556 GKLKLHLKWMPQP 568
           G L + L  +   
Sbjct: 151 GDLSICLDGLQLE 163

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  105 bits (264), Expect = 5e-27
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
            +   K    + + +V A+GL  KD  G SDPY  + V    +  K++KTI  +LNP+W 
Sbjct: 9   LDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWE 65

Query: 314 EHFEFIVEDESTQHLVVRIYD-----------DEGIQSSELIGCAQVRLCELEPGKVKDV 362
           E+F F   + S+  + VR+ D               +S + +G   + +  L      DV
Sbjct: 66  ENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE--MDV 122

Query: 363 WLKLVKDLDVQRDTKYRGQVHLEL 386
           W  L K       +   G + L +
Sbjct: 123 WYNLDK---RTDKSAVSGAIRLHI 143

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  104 bits (261), Expect = 1e-26
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 22/133 (16%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
             +S+TV+ A+ L A D  G +DPYV + + K  T+ +T+ +   LNP+W + F F   +
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--TKKRTKTIYGNLNPVWEENFHFECHN 74

Query: 508 GLHDMLIAEVWDHDTFGK------------DYMGRCILTLTRVILEGEYTDCFELD---- 551
              D +   V D D   K            D++G+ I+ +    L GE    + LD    
Sbjct: 75  -SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT--LSGEMDVWYNLDKRTD 131

Query: 552 -GTKSGKLKLHLK 563
               SG ++LH+ 
Sbjct: 132 KSAVSGAIRLHIS 144

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 98.6 bits (246), Expect = 2e-24
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
             L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  NP+WNE  ++ 
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 320 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
               ED   + L + + D++    +E IG  +  L +L+  + K+  + L +
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 91.7 bits (228), Expect = 4e-22
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 14/138 (10%)

Query: 427 GTEAIELEKDASQKRREVII-------RGVLSVTVILAENLPASDLMGKADPYVVLTM-- 477
           G+EA   + D +     +            L  T+I A+ L   D  G ADPYV L +  
Sbjct: 1   GSEANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 60

Query: 478 -KKSETRNKTRVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCI 532
                 + +T+ + +  NP+WN+T  +     ED     L   V D D FG  +++G   
Sbjct: 61  GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120

Query: 533 LTLTRVILEGEYTDCFEL 550
            +L ++           L
Sbjct: 121 FSLKKLKANQRKNFNICL 138

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 96.4 bits (240), Expect = 8e-24
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 448 GVLSVTVILAENLPASDLMGK-----------ADPYVVLTMKKSETRNKTRVVNDCLNPI 496
           G+L + +  A +L  +    +            DPY+ L +  S    +T       +P 
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKTNSPA 64

Query: 497 WNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELDGTKS 555
           W+  F   V +G    +   V+     G D ++  C +    ++  G       +D    
Sbjct: 65  WHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE 122

Query: 556 GKLKLHLK 563
           GK+ + + 
Sbjct: 123 GKVYVIID 130

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 88.7 bits (220), Expect = 4e-21
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 27/141 (19%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINND 307
              G L++K+ +A  L       +            DPY  L V     +  ++ T    
Sbjct: 3   VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKT 60

Query: 308 LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLK 365
            +P W++ F   V +   + + + ++ D  I   + +    ++  EL     +  + W+ 
Sbjct: 61  NSPAWHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 366 LVKDLDVQRDTKYRGQVHLEL 386
           L             G+V++ +
Sbjct: 119 LEP----------EGKVYVII 129

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 96.6 bits (240), Expect = 1e-23
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 438 SQKRREVIIRGVLSVTVILAENLPASDLMGK----------ADPYVVLTMKKSETRNKTR 487
           S     +   G L V +  A  L  +    +           DPY+ +++ +     +T 
Sbjct: 19  SMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVG-QTS 77

Query: 488 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTD 546
                  P +N+ F   V DG H  L   V+     G D ++  C L    ++     +D
Sbjct: 78  TKQKTNKPTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRTTGASD 135

Query: 547 CFE--LDGTKSGKLKLHLKW 564
            FE  +D    GK+ + +  
Sbjct: 136 TFEGWVDLEPEGKVFVVITL 155

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 96.2 bits (239), Expect = 2e-23
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 28/154 (18%)

Query: 247 PILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGK----------SDPYAVLFVRPLPE 296
            +  G  S   +K  G L V++ +A GL       +           DPY  + V     
Sbjct: 14  LVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ--V 71

Query: 297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-- 354
           +  ++ T      P +NE F   V D    HL + ++ +  +     +    ++  EL  
Sbjct: 72  RVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELAVFHETPLGYDHFVANCTLQFQELLR 129

Query: 355 --EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386
                   + W+ L             G+V + +
Sbjct: 130 TTGASDTFEGWVDLEP----------EGKVFVVI 153

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDF-- 503
              L+V ++ A+ LPA D  G +DP+V + +    + + +T+V    LNP WN+TF F  
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84

Query: 504 -VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL--DGTKSG 556
              E  +  +L  +V D+D F + D +G   + L +V L    T   +L   G  SG
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
            TL VK+++A+ L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F F   
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E    + L +++ D +    ++ IG   + L +++  +++  W  L
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 95.2 bits (237), Expect = 3e-23
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM------------KKSETRNKTRVVNDCLN 494
            G L + ++ A NL   D  G +DP+V + +              +E + +T+ V   LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 495 PIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 550
           P WNQT  +     E  +   L   VWD+D F   D++G  ++ L+           + L
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-----------LPEKTKKSKTINNDLNP 310
           G L + ++QA+ L  +D  G SDP+  +++ P             E  +++K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 311 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            WN+   +     E    + L V ++D +   S++ +G   + L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 91.3 bits (227), Expect = 6e-22
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYV--VLTMKKSETRNKTRVVNDCLNPIWNQTFDFV 504
              L V +I A  LPA D+ G +DPYV   L   K +   +T+V    LNP++N+ F F 
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF-ETKVHRKTLNPVFNEQFTFK 91

Query: 505 V--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 550
           V   +     L+  V+D D F K D +G   + +  V       +  +L
Sbjct: 92  VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFD 502
              L V V     L  +D    +++PYV   +   K  + + KT +  D +NP++++T  
Sbjct: 22  TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLR 81

Query: 503 FVVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLK 559
           + +    L    L   VW H  FG+  ++G   + +    L+ +   C  L G  S + +
Sbjct: 82  YEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE 141

Query: 560 LHLKW 564
            H   
Sbjct: 142 GHHHH 146

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
            +L V + +   L   D    +S+PY   ++ P   +  K KT    + +NP+++E   +
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 319 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
            +     + + L   ++       +  +G A++++   +  K  D  L L   +  + + 
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142

Query: 377 KY 378
            +
Sbjct: 143 HH 144

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V +I A  LPA D+ G +DPYV + +    + + +T+V    LNP++N+ F F V
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100

Query: 506 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 554
              +     L+  V+D D F K D +G   + +  V       +  +L   +
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 91.2 bits (227), Expect = 5e-22
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79

Query: 504 --VVEDGLHD-MLIAEVWDHDTFGK---DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 557
             V      + ML   +WD     +   +++G  ++ L   +L+ E    ++L    SG 
Sbjct: 80  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQTHDSGP 138

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P       +++KT+   L P WN+ F + 
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 320 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   +  + SE +G   + L           W KL
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 131

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 90.8 bits (226), Expect = 6e-22
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76

Query: 504 --VVEDGLHD-MLIAEVWDHDTFGK---DYMGRCILTLTRVILEGE 543
             V      + ML   +WD     +   +++G  ++ L   +L+ E
Sbjct: 77  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 122

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P       +++KT+   L P WN+ F + 
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 320 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   +  + SE +G   + L           W KL
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 128

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 87.8 bits (218), Expect = 1e-20
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
             VL + +I  + L +    G  DPYV +++          KT+ V DC +P +++ F F
Sbjct: 26  DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84

Query: 504 -VVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLTRVILEGEYTDC-FELDGTKSGKLK 559
            V E+     L+  VW+  +  +    +G     +  ++   +     + L G   G+  
Sbjct: 85  PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGR-T 143

Query: 560 LHLK 563
            HLK
Sbjct: 144 KHLK 147

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 77.8 bits (192), Expect = 3e-17
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF- 318
             L + +++ KGL +K   G  DPY  + + P   + +  KT  + +  +P ++EHF F 
Sbjct: 27  RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85

Query: 319 IVEDESTQHLVVRIYDDEGIQ-SSELIGCAQVRLCELE-PGKVKDVWLKL 366
           + E++  + L+V +++       S LIGC    +  L  P K    W  L
Sbjct: 86  VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
            G L + V+  ++L   D     +PYV   +       ++ KT++     NP +N+   +
Sbjct: 19  NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77

Query: 504 --VVEDGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKS 555
               ++ L    L   V   ++  +  ++G   L L    L  E    ++L     
Sbjct: 78  SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 82.3 bits (204), Expect = 7e-19
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
           GTL + ++  K L  +D     +PY   ++ P   KT  +K+K      NP +NE   + 
Sbjct: 20  GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78

Query: 320 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               E    + L + +   E ++ +  +G   + L +    K    W +L
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              + V +I A NL A D+ G +DPYV + +    K   + KT      LNPI+N++F F
Sbjct: 15  ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF 74

Query: 504 VVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCIL 533
            +  + L +  +I  V D D   + D +G+  L
Sbjct: 75  DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 107

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            ++ V +++A+ L   D+ G SDPY  +++    ++ +K KT     +LNPI+NE F F 
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +  E  +   +++ + D + +  +++IG   +        
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 85.9 bits (213), Expect = 4e-20
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
           R  L V V    NL A      +DPYV + +   K+   R KT V    LNP+++Q+FDF
Sbjct: 23  RNKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81

Query: 504 VV--EDGLHDMLIAEVWDHDTFGKD---YMGRCILTLTRVILEGEYTDCFEL 550
            V   +     L   V +   F       +G+ ++ L    L   +T  ++L
Sbjct: 82  SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDL 133

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 78.6 bits (194), Expect = 2e-17
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +   + L        SDPY  +++ P   ++ + KT      LNP++++ F+F 
Sbjct: 24  NKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82

Query: 320 V--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGKVKDVWLKLVKD 369
           V   +   + L V + +  G  S +  L+G   V L   E  K    W  L +D
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
           +G L V +I   +L A D  G +DP+V L +      + ++KT++    LNP +N+ F +
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95

Query: 504 VVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCIL 533
            ++   L    L   VWD+D     DY+G C L
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 128

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 75.5 bits (186), Expect = 4e-16
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++   L   D  G SDP+  L+++P   K  K KT      LNP +NE F + 
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           +   D + + L + ++D +  +S++ IG  Q+ +     G+    W + +K+ D
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 148

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
             L V  ++A      +  G  D Y    V       + ++      L+  W E     +
Sbjct: 26  AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E+  T  L + +   +      + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM--KKSETRNKTRVVNDCLNPIWNQTFDFV 504
           +  L VT + A         G  D YV  ++  +      +T +    L+  W +     
Sbjct: 25  KAELFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 505 V--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD--GTKSG 556
           +  E+     L   +   D F +    G   L L    +        EL   G  SG
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 83.5 bits (206), Expect = 2e-19
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 12/131 (9%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
            +L V V  A+   A +   K + YV L ++    ++ T  V     P W Q F F +  
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VKSTTIAVRGS-QPSWEQDFMFEINR 58

Query: 508 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE--YTDCFELDG---TKSGKLKLHL 562
            L   L  EVW+        +G   + L  +    E    +   LD        ++    
Sbjct: 59  -LDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK 117

Query: 563 KWMPQPIYRDT 573
                 I  D 
Sbjct: 118 DPTFHRILLDA 128

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V + +AK    ++   K + Y  L V+ +   T   +       P W + F F + 
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG----SQPSWEQDFMFEIN 57

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRDTK 377
                 L V ++ ++G+    ++G   + L  +    E G  +  WL L     +  D++
Sbjct: 58  RLDLG-LTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQA-IMADSE 112

Query: 378 YRGQV----HLELLYCPF 391
             G      H  LL   F
Sbjct: 113 ICGTKDPTFHRILLDAHF 130

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 84.8 bits (210), Expect = 2e-19
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
           G LEV++++A+ LT K        PY  +++        K KT      L+P++ +   F
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 319 IVEDESTQHLVVRIYDDEG-IQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               +  + L V ++ D G +     +G AQ+ L EL+   +   W KL
Sbjct: 90  DESPQG-KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 82.9 bits (205), Expect = 9e-19
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFD 502
           +G L V VI A +L           PYV + +        + KTR+    L+P++ Q+  
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 503 FVVEDGLHDMLIAEVW-DHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 550
           F        +L   VW D+       +MG   + L  + L       ++L
Sbjct: 89  FDESPQ-GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT---KKSKTINNDLNPIWNEHFEF 318
               + ++Q   L+             + V P  E T    +++ ++     ++NE F  
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 319 IVEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLV 367
            +       + L V +   +     E +G AQ+ L E+   G+    W  L+
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFD 502
               ++ +I   NL A          + + +    + +    +TR ++     ++N+ F 
Sbjct: 42  NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFW 101

Query: 503 FVV-EDGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 543
             +    LH   L  +V   D     + +G   ++L  V   GE
Sbjct: 102 VSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGE 145

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 83.6 bits (207), Expect = 4e-19
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
            G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +  + LNP +N++F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 504 VVE-DGLHDM-LIAEVWDHDTFGK-DYMGRCIL 533
            V  + +  + ++  V D+D  GK D +G+  +
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 74.8 bits (184), Expect = 5e-16
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 320 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           V  E      +VV + D + I  ++ IG   V        
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 83.6 bits (207), Expect = 4e-19
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              L+V V+ A +LP SD+ G +DPYV + +   KK  ++ KT V     N ++N+ F F
Sbjct: 29  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88

Query: 504 VVE-DGLHDM-LIAEVWDHDTFGK-DYMGRCIL 533
            +  + L ++ +   V D +   + + +GR +L
Sbjct: 89  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            TL V +++A+ L   D+ G SDPY  + +    ++  K KT       N ++NE F F 
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 320 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           +  E      +   + D E    +E+IG  ++ L     G     W ++  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIG--RLVLGATAEGSGGGHWKEICD 138

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 88.8 bits (219), Expect = 8e-19
 Identities = 32/138 (23%), Positives = 46/138 (33%), Gaps = 26/138 (18%)

Query: 451 SVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VVEDGL 509
            V+   AE+L         D Y+ +     E   +T VV +  NP W    DF  V    
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEF--RTGVVWNNNNPRWTDKMDFENVLLST 453

Query: 510 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLK----- 563
              L  +VWD D     D +G C  +       G +    EL     G++K         
Sbjct: 454 GGPLRVQVWDADYGWDDDLLGSCDRSPHS----GFHEVTCEL---NHGRVKFSYHAKCLP 506

Query: 564 ---------WMPQPIYRD 572
                    + PQ +  D
Sbjct: 507 HLTGGTCLEYAPQGLLGD 524

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 66.9 bits (162), Expect = 8e-12
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 16/140 (11%)

Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF- 318
            +  L V   +A+ L        +D Y  +F      +  ++  + N+ NP W +  +F 
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTT-ATDAYLKVF---FGGQEFRTGVVWNNNNPRWTDKMDFE 447

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK-----DLDVQ 373
            V   +   L V+++D +     +L+G           G   +V  +L           +
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDR---SPHSG-FHEVTCELNHGRVKFSYHAK 503

Query: 374 RDTKYRGQVHLELLYCPFGM 393
                 G   LE  Y P G+
Sbjct: 504 CLPHLTGGTCLE--YAPQGL 521

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 262 GTLEVKLVQAKGL-------TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 314
             L V++++A+ L        ++  +  S+PY  + + P  + +K++        P++ E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 315 HFEFIV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            + F +   +   + L++ + D +      +IG   V LCE++  K    W  L
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 447 RGVLSVTVILAENLPA-------SDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPI 496
              L+V VI A +LP           M  ++PYV + +   +K+    +T V      P+
Sbjct: 25  HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKN--SKQTGVKRKTQKPV 82

Query: 497 WNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL--D 551
           + + + F +   +     L+  V D D F +   +G+  + L  V L         L   
Sbjct: 83  FEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142

Query: 552 GTKSG 556
           G  SG
Sbjct: 143 GPSSG 147

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
               V + +A+GL   D     SDPY  + + P  +   K++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 321 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368
                     L   I   +     ++IG   + L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGK-ADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDF- 503
           R    V +  A  LPA D     +DPY+ +T+  + + + KTRV+   L+P +++TF F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 504 -VVEDGLHDM-LIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 543
            +    + ++ L   +   D F + D +G  ++ L+ + L   
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG 123

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 63.9 bits (155), Expect = 3e-12
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
            +L V V  A+   A +   K + YV L ++     + T  V     P W Q F F +  
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VESTTIAVRGS-QPSWEQDFMFEINR 67

Query: 508 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 538
            L   L  EVW+        +G   + L  +
Sbjct: 68  -LDLGLTVEVWNKGLIWDTMVGTVWIPLRTI 97

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 51.5 bits (123), Expect = 6e-08
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V + +AK    ++   K + Y  L V+ +   T   +       P W + F F + 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRG----SQPSWEQDFMFEIN 66

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRD 375
                 L V ++ ++G+    ++G   + L  +    E G  +  WL L     +   
Sbjct: 67  RLDL-GLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADS 120

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 63.1 bits (153), Expect = 5e-12
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPI-WNQTFDFVVEDG 508
           L V +     L      G+AD    +T +       +RV+ +C +   +++TF + V   
Sbjct: 23  LIVHLKTVSELR-----GRADRIAKVTFRGQS--FYSRVLENCEDVADFDETFRWPVASS 75

Query: 509 L--HDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFEL----DGTKSGKLKLH 561
           +  +++L  +++++     +  +G   + L +V+ E        L    +      L + 
Sbjct: 76  IDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSME 135

Query: 562 LKWMP 566
           +++  
Sbjct: 136 VRYQA 140

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 27/144 (18%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 253 YSELELKPVGT---LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLN 309
           +    L P G+   L V L     L      G++D  A +  R    ++  S+ + N  +
Sbjct: 9   HHSSGLVPRGSHMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCED 60

Query: 310 PI-WNEHFEFIVED--ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
              ++E F + V    +  + L ++I++   + S++LIG  ++ L ++    V++  +++
Sbjct: 61  VADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV----VEENRVEV 116

Query: 367 VKDLDVQRDTKYRGQVHLELLYCP 390
              L    +   +  + +E+ Y  
Sbjct: 117 SDTLIDDNNAIIKTSLSMEVRYQA 140

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 58.5 bits (140), Expect = 3e-09
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 9/105 (8%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVL-FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
            L++ +++A+ L  K        Y  L     L  +T       +     W EHFEF   
Sbjct: 12  VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 322 DESTQ---HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 363
                   HL            +  +G   V +  L      + W
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 49.2 bits (116), Expect = 2e-06
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 16/110 (14%)

Query: 436 DASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRV---VNDC 492
           +    RR   +  VL + +I A  LP          Y  L +       +T         
Sbjct: 2   NKDNSRR---VDNVLKLWIIEARELPPKK-----RYYCELCLD-DMLYARTTSKPRSASG 52

Query: 493 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK----DYMGRCILTLTRV 538
               W + F+F     +  + +    D D   K     Y+G   + +  +
Sbjct: 53  DTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTI-NNDLNPIWNEHFE 317
            L V+++  + L   +    S     + V          ++++  I NN  NP W+  FE
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557

Query: 318 FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           F V       +   + D +    ++ IG + +    L+ G
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG 597

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 48.0 bits (113), Expect = 6e-06
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 438 SQKRREVIIRGVLSVTVILAENLPASDLMG--KADPYVVLTM---KKSETRNKTRVV-ND 491
           +  +        L V +I  + LP  +       DP V++ +    +     +T V+ N+
Sbjct: 487 ALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNN 546

Query: 492 CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 526
             NP W+  F+F V      ++   V D+D+  K+
Sbjct: 547 GFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKN 581

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 12/126 (9%)

Query: 428 TEAIELEKDASQKRREVIIR---------GVLSVTVILAENLPASDLMGKADPYVVLTMK 478
             A E   D  +K+RE   +         G L V VI A  L A    GK++PY  ++M 
Sbjct: 358 KAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMG 417

Query: 479 KSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTR 537
                  TR + D LNP WN    F ++D   D+L   ++D D F  D ++GR  + + +
Sbjct: 418 SQSYT--TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAK 475

Query: 538 VILEGE 543
           +  E E
Sbjct: 476 IRTEQE 481

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 50.8 bits (121), Expect = 9e-07
 Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
           +   +G L V +++A  L      GKS+PY  +    +  ++  ++TI + LNP WN + 
Sbjct: 382 KTSGIGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNC 438

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRD 375
           +F ++D     L + ++D +     + +G  ++ + ++    + K    + +   +V   
Sbjct: 439 QFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP-- 496

Query: 376 TKYRGQVHLELLYCPF 391
               G+V +      F
Sbjct: 497 ---TGEVWVRFDLQLF 509

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 201 EK---KKLDFKLKVVGGDISTIPGLSDSIEATI 230
           EK   KKL   LK+   D  + P L  +I+AT+
Sbjct: 18  EKQALKKLQASLKLYADD--SAPAL--AIKATM 46

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799

 Score = 44.6 bits (104), Expect = 8e-05
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 250 PGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-----EKTKKSKTI 304
           P     +++    TL + ++  + L+ +        Y  + +  LP         K    
Sbjct: 666 PFSVDRIDVVVATTLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPS 721

Query: 305 NNDLNPIWNEH-FEFI-VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
            N +NP+W E  F F  +       L V + ++     ++ +G   + +  L  G
Sbjct: 722 TNSINPVWKEEPFVFEKILMPELASLRVAVMEE----GNKFLGHRIIPINALNSG 772

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 53/423 (12%), Positives = 107/423 (25%), Gaps = 129/423 (30%)

Query: 37  TTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
           T +A          K     +F   W+   +      +   L+KL   ++   +     S
Sbjct: 164 TWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 97  VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDAN------ 150
                       + S++     L    P    + ++ +    V        +A       
Sbjct: 221 SNI------KLRIHSIQAELRRLLKSKPYENCLLVLLN----V-------QNAKAWNAFN 263

Query: 151 -SSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKL 209
            S  IL + TR         +   F          L                 +     L
Sbjct: 264 LSCKIL-LTTR-------FKQVTDFLSAATTTHISLDHHSMTLT-------PDEVKSLLL 308

Query: 210 KVVGGDISTIPGLSDS--------IEATIHDAIEDSITWP----------VRKIVPIL-P 250
           K +      +P    +        I  +I D +     W           +   + +L P
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 251 GDYSEL--ELK--------PVGTLEV---------------KLVQAKGLTNKDLIGKSDP 285
            +Y ++   L         P   L +               KL +   L  K    K   
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQ--PKEST 425

Query: 286 YAV-----LFVRPLPEKTKKSKTI-----------NNDLNPIWNE---------HFEFIV 320
            ++          L  +    ++I           ++DL P + +         H + I 
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 321 EDESTQHLVVRIY-DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
             E    L   ++ D   ++        ++R           + L  ++ L       Y+
Sbjct: 486 HPERMT-LFRMVFLDFRFLE-------QKIRHDSTAWNASGSI-LNTLQQLK-----FYK 531

Query: 380 GQV 382
             +
Sbjct: 532 PYI 534

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	573
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.85
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.83
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.82
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.82
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.82
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.82
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.81
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.8
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.8
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.79
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.79
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.79
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.79
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.78
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.78
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.78
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.78
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.78
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.77
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.77
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.77
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.77
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.77
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.76
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.76
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.76
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.76
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.75
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.75
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.75
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.75
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.75
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.75
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.75
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.75
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.74
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.74
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.74
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.74
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.74
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.73
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.73
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.73
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.73
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.73
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.73
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.73
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.73
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.72
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.72
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.72
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.72
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.71
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.71
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.71
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.71
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.71
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.7
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.69
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.69
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.69
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.68
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.65
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.64
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.64
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.63
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.63
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.62
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.6
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.58
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.56
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.55
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.54
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.52
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.49
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.46
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.44
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.42
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.38
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.23
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.19
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.16
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.15
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.15
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.07
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.06
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.04
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.99
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.92
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.88
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.83
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	93.52
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	90.6
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	89.66
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	89.57
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	86.34
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	80.9

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=8.9e-35  Score=289.65  Aligned_cols=240  Identities=28%  Similarity=0.453  Sum_probs=203.6

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEe
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d  334 (573)
                      +....|.|+|+|++|++|+.+|..|.+||||++++.+...+.++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus        14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d   93 (284)
T 2r83_A           14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD   93 (284)
T ss_dssp             EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence            3457899999999999999999889999999999986656789999999999999999999998643  45799999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHh
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL  414 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  414 (573)
                      ++.+++|++||++.++|.++..+.....|++|.....  ......|+|.+.+.|.|                        
T Consensus        94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~~~G~i~l~l~~~p------------------------  147 (284)
T 2r83_A           94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--EEQEKLGDICFSLRYVP------------------------  147 (284)
T ss_dssp             CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS--CCCCCCCEEEEEEEEET------------------------
T ss_pred             CCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc--ccccccccEEEEEEecC------------------------
Confidence            9999899999999999999988888899999975321  12356799999999864                        


Q ss_pred             ccCcccccCCCCCcchhhhchhhhccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCC
Q 008214          415 TNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVND  491 (573)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~  491 (573)
                                                     ..+.|.|+|++|++|+..+..|.+||||++++...   ..+++|+++++
T Consensus       148 -------------------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~  196 (284)
T 2r83_A          148 -------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN  196 (284)
T ss_dssp             -------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS
T ss_pred             -------------------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC
Confidence                                           23789999999999999999999999999998531   24689999999


Q ss_pred             CCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCCC-ceeEEEEEEcceeee------------cCeEeEEEEcCCC
Q 008214          492 CLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL------------EGEYTDCFELDGT  553 (573)
Q Consensus       492 t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~------------~~~~~~~~~L~~~  553 (573)
                      |.||.|||+|.|.+...  ....|.|+|||++..+. ++||++.|+++.+..            .....+||+|.+.
T Consensus       197 t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          197 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             CSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            99999999999998743  24579999999998865 699999999986321            2345799999864

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=6.2e-34  Score=284.81  Aligned_cols=239  Identities=30%  Similarity=0.437  Sum_probs=196.7

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEe
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d  334 (573)
                      +....|.|.|+|++|++|+.+|..|.+||||++++.+.+.+.++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus        15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d   94 (296)
T 1dqv_A           15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD   94 (296)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence            3457899999999999999999999999999999975557789999999999999999999998643  34589999999


Q ss_pred             CCCCCCCCceEEEEEE-ccccCC-CceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHH
Q 008214          335 DEGIQSSELIGCAQVR-LCELEP-GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK  412 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~-l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~  412 (573)
                      +|.+++|++||++.++ +.++.. ......|+.|....   ......|+|.+.+.|.|                      
T Consensus        95 ~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~vsl~y~~----------------------  149 (296)
T 1dqv_A           95 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG---SEKADLGELNFSLCYLP----------------------  149 (296)
T ss_dssp             CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS---SCCSCCCEEEEEEEEET----------------------
T ss_pred             cCCCCCCceEEEEEeccccccccCCccceeeecccccc---ccccccceEEEEEEecc----------------------
Confidence            9999999999999996 444432 33456899986432   23456799999999864                      


Q ss_pred             HhccCcccccCCCCCcchhhhchhhhccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeeccc
Q 008214          413 VLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVV  489 (573)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~  489 (573)
                                                       ..+.|.|+|++|++|+..+..|.+||||++++..   ...++||+++
T Consensus       150 ---------------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~  196 (296)
T 1dqv_A          150 ---------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK  196 (296)
T ss_dssp             ---------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCC
T ss_pred             ---------------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceeccee
Confidence                                             2378999999999999999999999999999962   1357899999


Q ss_pred             CCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCCC-ceeEEEEEEcceeee-------------cCeEeEEEEcCCC
Q 008214          490 NDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL-------------EGEYTDCFELDGT  553 (573)
Q Consensus       490 ~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~-------------~~~~~~~~~L~~~  553 (573)
                      +++.||+|||.|.|.+...  ....|.|+|||++..+. ++||.+.|+++++..             +....+|++|.+.
T Consensus       197 ~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          197 KNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             CSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             cCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            9999999999999988743  24579999999998865 699999999987643             2234678888654

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.2e-20  Score=164.83  Aligned_cols=128  Identities=29%  Similarity=0.475  Sum_probs=110.7

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC---CCcEEEEEEEeC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDD  335 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~---~~~~l~i~v~d~  335 (573)
                      ...|.|.|+|++|++|+..+. +.+||||++++.   +++++|++++++.||+|||+|.|.+...   ....|.|+|||+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            356999999999999999998 999999999997   5679999999999999999999999754   457999999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeec
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~  391 (573)
                      +..++|++||++.++|.++..+...+.|+.+.+... .......|+|++++.|.|.
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~-~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEEC-TTCCEEEEEEEEEEEECCC
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccC-CCCCCCCCEEEEEEEEECC
Confidence            999999999999999999988888899998433222 1234577999999999873

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.85  E-value=1.2e-20  Score=165.60  Aligned_cols=124  Identities=35%  Similarity=0.597  Sum_probs=111.1

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      .+.|.|+|+|++|++|+..+..+.+||||++++.   .+.++|++++ ++.||+|||+|.|.+.+ ....|.|+|||++.
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~   82 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDV   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSS
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCC
Confidence            5789999999999999999988999999999997   5678999998 89999999999999986 56799999999999


Q ss_pred             CCCCCceEEEEEEcccc-CCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214          338 IQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~  392 (573)
                      +++|++||++.++|.++ ..+.....|++|.+      ..+..|+|++++.|.|.+
T Consensus        83 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~------~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEHHHhccCCCCCcEEEEeec------CCccCEEEEEEEEEEeCC
Confidence            98999999999999998 55666789999962      457899999999999854

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=1.8e-20  Score=162.17  Aligned_cols=120  Identities=27%  Similarity=0.521  Sum_probs=105.2

Q ss_pred             ceEEEEEEEEeeeccCC---CCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214          261 VGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      .|.|+|+|++|++|+.+   +..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   667899999999998544578999999999999999999999976677899999999998


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      . +|++||++.++|.++..+.....|++|.        ....|.|+++++..
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~--------~~~~g~i~~~le~~  124 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN--------QVTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEET--------TTEEEEEEEEEECC
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcC--------CCceEEEEEEEEeC
Confidence            7 5999999999999999999999999994        25677888877654

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=2.1e-20  Score=161.81  Aligned_cols=120  Identities=23%  Similarity=0.454  Sum_probs=106.0

Q ss_pred             eeEEEEEEEEeecCCCC---CCCCCCCcEEEEEEcCc-ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPAS---DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|++|+..   +..|.+||||++++++. ..++||++++++.||.|||+|.|.+..+....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   55688999999999753 468899999999999999999999976667899999999998


Q ss_pred             CCCceeEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEEEe
Q 008214          523 FGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP  566 (573)
Q Consensus       523 ~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~~p  566 (573)
                      .++++||++.++|+++..+.....||+|.+.+.|.|+++++..|
T Consensus        82 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~~  125 (126)
T 1rlw_A           82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred             CCCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeCC
Confidence            87789999999999998888889999999987888888877654

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=3.6e-20  Score=166.09  Aligned_cols=128  Identities=25%  Similarity=0.485  Sum_probs=103.8

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~  335 (573)
                      ...|.|+|+|++|++|+.++..|.+||||++++.+...   +.++|++++++.||+|||+|.|.+... ...|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEEC
Confidence            57899999999999999999889999999999985332   578999999999999999999999854 56899999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCcee------EEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVK------DVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~------~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      +..++|++||++.++|.++..+...      ..|+.|.+..   ......|+|++++.|.|
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS---TTCCCCSEEEEEEEECC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc---CCCCcceEEEEEEEEeC
Confidence            9999999999999999999765432      5899996543   23467899999999975

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=2.9e-20  Score=162.52  Aligned_cols=124  Identities=28%  Similarity=0.538  Sum_probs=109.0

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCC
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~  336 (573)
                      +..+.|.|+|+|++|++|+.++..|.+||||++++.   ++.++|++++++.||+|||+|.|.+.+. .+.|.|+|||++
T Consensus         8 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d   83 (133)
T 2ep6_A            8 DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDED   83 (133)
T ss_dssp             SCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEE
T ss_pred             ccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECC
Confidence            457899999999999999999988999999999997   5678999999999999999999999865 468999999999


Q ss_pred             CCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      ..++|++||++.+++.++..+.  ..|++|....   .+....|+|++++.|.
T Consensus        84 ~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~---~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           84 GDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD---LEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             TTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC---TTSCCSSEEEEEEEEE
T ss_pred             CCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC---CCCccceEEEEEEEEE
Confidence            9888999999999999997654  5899986432   1346889999999986

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.83  E-value=1.7e-19  Score=160.64  Aligned_cols=121  Identities=30%  Similarity=0.559  Sum_probs=106.4

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC-
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI-  338 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~-  338 (573)
                      ..|.|+|+|++|++|+.+|..|.+||||+++++   ++.++|++++++.||+|||+|.|.+..+ .+.|.|+|||++.. 
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDI   90 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC---CEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCc
Confidence            479999999999999999999999999999996   6789999999999999999999999865 46899999999985 


Q ss_pred             ----------CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          339 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       339 ----------~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                                ++|++||++.++|.++  ....+.|++|.+..   ......|+|++++.|.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRT---DKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSS---TTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCC---CCCCCceEEEEEEEEE
Confidence                      7899999999999999  34568999997532   2345789999999985

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=166.20  Aligned_cols=117  Identities=22%  Similarity=0.335  Sum_probs=101.4

Q ss_pred             CcceEEEEEEEEeeeccCCCC----------CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEE
Q 008214          259 KPVGTLEVKLVQAKGLTNKDL----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  328 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~----------~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l  328 (573)
                      ...|.|+|+|++|++|+++|.          .|.+||||++++++  .+..+|+++++|+||+|||+|.|.+.+  .+.|
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~--~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L  101 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ--VRVGQTSTKQKTNKPTYNEEFCANVTD--GGHL  101 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT--EEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC--EeeEEeeecCCCCCCccCcEEEEEcCC--CCEE
Confidence            568999999999999998873          26799999999962  335799999999999999999999975  4589


Q ss_pred             EEEEEeCCCCCCCCceEEEEEEccccCCC----ceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          329 VVRIYDDEGIQSSELIGCAQVRLCELEPG----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       329 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      .|+|||++.+++|++||++.+++.++..+    ...+.|++|.          ..|+|++.++|.
T Consensus       102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~----------~~G~i~l~l~~~  156 (157)
T 2fk9_A          102 ELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE----------PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB----------SSCEEEEEEEEC
T ss_pred             EEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC----------CCcEEEEEEEEE
Confidence            99999999999999999999999998644    6789999984          279999999874

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.82  E-value=1.1e-19  Score=161.84  Aligned_cols=116  Identities=19%  Similarity=0.341  Sum_probs=101.7

Q ss_pred             ceeeEEEEEEEEeecCCCCCC----------CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEE
Q 008214          445 IIRGVLSVTVILAENLPASDL----------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLI  514 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~----------~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~  514 (573)
                      ...|.|+|+|.+|++|+.+|.          .|.+||||++.+++ .+..||+++++|.||+|||+|+|.+.+  ...|.
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~-~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~  102 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ-VRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLE  102 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC-EeeEEeeecCCCCCCccCcEEEEEcCC--CCEEE
Confidence            567999999999999998773          36799999999975 345799999999999999999999975  46899


Q ss_pred             EEEEeCCCCCC-ceeEEEEEEcceeeec----CeEeEEEEcCCCCCeEEEEEEEEE
Q 008214          515 AEVWDHDTFGK-DYMGRCILTLTRVILE----GEYTDCFELDGTKSGKLKLHLKWM  565 (573)
Q Consensus       515 i~V~d~~~~~~-d~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~G~i~l~l~~~  565 (573)
                      |+|||++..++ |+||++.|+|.++..+    ...+.||+|++  +|+|+++++|.
T Consensus       103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~  156 (157)
T 2fk9_A          103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT  156 (157)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred             EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence            99999998875 6999999999999865    56799999986  79999999985

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=2.2e-19  Score=158.34  Aligned_cols=121  Identities=26%  Similarity=0.450  Sum_probs=106.7

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC---CCCEEEEEEEeCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT  522 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~~~  522 (573)
                      ..|.|.|+|++|++|+..+. +.+||||++++++  .+++|++++++.||+|||+|.|.+..+   ....|.|+|||++.
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD--EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS--CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC--EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            46899999999999999988 9999999999986  678999999999999999999999754   45799999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEE---cCCC----CCeEEEEEEEEEecCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFE---LDGT----KSGKLKLHLKWMPQPI  569 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~---L~~~----~~G~i~l~l~~~p~~~  569 (573)
                      .++ ++||++.|+|.++..+.....||.   |.+.    ..|+|+++++|.|.+.
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            865 699999999999988877889988   6443    3599999999998765

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.82  E-value=2.4e-19  Score=164.57  Aligned_cols=129  Identities=25%  Similarity=0.478  Sum_probs=102.2

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~  335 (573)
                      ...|.|+|+|++|++|+.++..|.+||||++++.+...   ++++|+++++++||+|||+|.|.+.. ....|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEEC
Confidence            46799999999999999999899999999999985332   56899999999999999999999985 456899999999


Q ss_pred             CCCCCCCceEEEEEEccccCCCcee-E-----EEEEeeecccccCCCcceeEEEEEEEEeec
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVK-D-----VWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~  391 (573)
                      +.+++|++||++.++|.++..+... +     .|+.|....   ...+..|+|++++.|.|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS---TTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC---CCCccCEEEEEEEEEEeC
Confidence            9999999999999999999766433 2     799997542   245678999999999985

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.81  E-value=1.5e-19  Score=158.52  Aligned_cols=117  Identities=20%  Similarity=0.339  Sum_probs=100.7

Q ss_pred             cceEEEEEEEEeeeccCCCCCCC-----------CCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEE
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  328 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l  328 (573)
                      ..|.|+|+|++|++|+++|..++           +||||++++.  +....+|++++++.||+|||+|.|.+.+.  +.|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~--~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L   79 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC--CeEeeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence            46999999999999998875544           9999999985  23347899999999999999999999865  789


Q ss_pred             EEEEEeCCCCCCCCceEEEEEEccccCCC--ceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          329 VVRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       329 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      .|+|||++..++|++||++.+++.++..+  ...+.|+.|.          +.|+|+++++|.+
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~i~l~l~~~~  133 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC----------CCeEEEEEEEEEe
Confidence            99999999999999999999999999764  3458999873          3799999999975

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.80  E-value=4.3e-19  Score=155.70  Aligned_cols=122  Identities=28%  Similarity=0.453  Sum_probs=106.6

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  523 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~  523 (573)
                      ...+.|.|+|++|++|+..+..+.+||||++++++  .+++|++++ ++.||.|||+|.|.+.+ ....|.|+|||++..
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSC
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC--ccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCC
Confidence            35799999999999999999889999999999986  567999998 89999999999999986 567999999999988


Q ss_pred             CC-ceeEEEEEEcceeeecC-eEeEEEEcC--CCCCeEEEEEEEEEecCC
Q 008214          524 GK-DYMGRCILTLTRVILEG-EYTDCFELD--GTKSGKLKLHLKWMPQPI  569 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~-~~~~~~~L~--~~~~G~i~l~l~~~p~~~  569 (573)
                      ++ ++||++.|+|.++...+ ...+||+|.  +...|+|+++++|.|...
T Consensus        84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred             CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCCC
Confidence            65 69999999999995544 457899985  345799999999998753

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.80  E-value=2e-18  Score=153.76  Aligned_cols=116  Identities=31%  Similarity=0.594  Sum_probs=102.5

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC--
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF--  523 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~--  523 (573)
                      ..|.|.|+|++|++|+..+..|.+||||++++++  .+++|+++++|.||.|||+|.|.+..+ .+.|.|+|||++..  
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~   91 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--TKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIK   91 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--EEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC--EEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcc
Confidence            4699999999999999999999999999999975  788999999999999999999999865 47899999999974  


Q ss_pred             ---------C-CceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEEEe
Q 008214          524 ---------G-KDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWMP  566 (573)
Q Consensus       524 ---------~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~~p  566 (573)
                               + +++||++.|+|.++  .....+||+|...     ..|+|+|+++|.-
T Consensus        92 ~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e~  147 (148)
T 3kwu_A           92 SRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVEI  147 (148)
T ss_dssp             HHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred             ccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence                     4 47999999999998  4566899999742     4699999999863

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.79  E-value=8.3e-19  Score=153.79  Aligned_cols=118  Identities=19%  Similarity=0.443  Sum_probs=101.4

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEE
Q 008214          445 IIRGVLSVTVILAENLPASDLMGK-----------ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDML  513 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~-----------~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L  513 (573)
                      ...|.|.|+|++|++|+..+..+.           +||||++++++ ....+|+++++|.||+|||+|+|.+.+.  ..|
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~-~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L   79 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC-eEeeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence            356999999999999998775433           89999999965 3457999999999999999999999864  789


Q ss_pred             EEEEEeCCCCCC-ceeEEEEEEcceeeecC--eEeEEEEcCCCCCeEEEEEEEEEec
Q 008214          514 IAEVWDHDTFGK-DYMGRCILTLTRVILEG--EYTDCFELDGTKSGKLKLHLKWMPQ  567 (573)
Q Consensus       514 ~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~--~~~~~~~L~~~~~G~i~l~l~~~p~  567 (573)
                      .|+|||++..++ ++||.+.|++.++..++  ..+.|++|++  .|+|+++++|.+.
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~~  134 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEec
Confidence            999999998765 69999999999998753  4589999976  7999999999864

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.79  E-value=1.4e-18  Score=155.73  Aligned_cols=121  Identities=28%  Similarity=0.494  Sum_probs=98.5

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc----ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeC
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  520 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~  520 (573)
                      ...+.|.|+|++|++|+..+..|.+||||++++...    ..+++|+++++|.||.|||+|.|.+.. ....|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT-TTCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC-CCCEEEEEEEEC
Confidence            457899999999999999998899999999999742    257899999999999999999999985 357899999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeE------eEEEEcCCC-----CCeEEEEEEEEEe
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEY------TDCFELDGT-----KSGKLKLHLKWMP  566 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~------~~~~~L~~~-----~~G~i~l~l~~~p  566 (573)
                      +..++ ++||++.|+|.++......      .+||+|...     ..|+|+++++|.|
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            98865 6999999999999876532      599999643     4799999999986

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.79  E-value=8.9e-19  Score=152.81  Aligned_cols=124  Identities=22%  Similarity=0.430  Sum_probs=102.3

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~  340 (573)
                      ...|+|+|++|++|+.+|..|.+||||++++.+. .+.++|+++++++||+|||+|.|.+.+..  .|.|+|||++..++
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYVGKTD--SITISVWNHKKIHK   80 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEEEETTC--CEEEEEEEGGGTTS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEEeCCCC--EEEEEEEECCCCCC
Confidence            4679999999999999999999999999999632 47899999999999999999999998653  59999999998766


Q ss_pred             ---CCceEEEEEEcccc-CCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          341 ---SELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       341 ---d~~lG~~~i~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                         |++||++.+++.++ ........|+.|..... .......|+|++++.+
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~-~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP-SDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSST-TCCCCCCSEEEEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCC-CCCCceeEEEEEEEEc
Confidence               89999999999988 33333458888865321 2234679999999875

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.79  E-value=6.7e-19  Score=155.86  Aligned_cols=112  Identities=30%  Similarity=0.475  Sum_probs=100.8

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEe
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d  334 (573)
                      +....|.|.|+|++|++|+.++..+.+||||++++.+.+.++++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  108 (143)
T 3f04_A           29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence            3457899999999999999999889999999999976666789999999999999999999998643  45799999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ++.+++|++||++.++|.++..+...+.|++|.+
T Consensus       109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            9999999999999999999998888999999853

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=1e-18  Score=156.40  Aligned_cols=112  Identities=30%  Similarity=0.475  Sum_probs=100.6

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEe
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d  334 (573)
                      +....+.|+|+|++|++|+..+..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  116 (152)
T 1rsy_A           37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  116 (152)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence            3457899999999999999999889999999999986556789999999999999999999988643  45789999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ++.+++|++||++.++|.++..+...+.|++|.+
T Consensus       117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            9999899999999999999988888899999853

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=9.1e-19  Score=154.59  Aligned_cols=112  Identities=26%  Similarity=0.444  Sum_probs=99.7

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec---CCCcEEEEEEEe
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYD  334 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~~l~i~v~d  334 (573)
                      ....+.|+|+|++|++|+.++..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+..   .....|.|+|||
T Consensus        22 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  101 (141)
T 2d8k_A           22 NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLD  101 (141)
T ss_dssp             CSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEE
T ss_pred             eCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEE
Confidence            35679999999999999999988999999999998655678999999999999999999998532   235789999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      ++.+++|++||++.++|.++..+.....|++|.+.
T Consensus       102 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          102 YDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             CCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            99998999999999999999888888999999754

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=1.3e-18  Score=151.99  Aligned_cols=117  Identities=32%  Similarity=0.562  Sum_probs=103.1

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~  524 (573)
                      ...+.|.|+|++|++|+..+..|.+||||++++++  .+++|++++++.||.|||+|.|.+.+. ...|.|+|||++..+
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC--EEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCCCC
Confidence            45799999999999999999899999999999986  678999999999999999999999864 578999999999886


Q ss_pred             C-ceeEEEEEEcceeeecCeEeEEEEcCC-----CCCeEEEEEEEEEe
Q 008214          525 K-DYMGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKWMP  566 (573)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~~~~~~~~L~~-----~~~G~i~l~l~~~p  566 (573)
                      + ++||++.+++.++..+.  .+||+|..     ...|+|+++++|..
T Consensus        87 ~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence            4 69999999999986543  58999964     35799999999864

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.78  E-value=2.8e-19  Score=159.93  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=96.9

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC---CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR  331 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~  331 (573)
                      +....|.|+|+|++|++|+.+|..|.+||||++++.+..   ..++||+++++|+||+|||+|.|.+...  ....|.|+
T Consensus        38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~  117 (155)
T 2z0u_A           38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD  117 (155)
T ss_dssp             EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred             EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence            345789999999999999999999999999999998532   2378999999999999999999998643  24689999


Q ss_pred             EEeCCCCCCCCceEEEEEEccccCC-CceeEEEEEee
Q 008214          332 IYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLV  367 (573)
Q Consensus       332 v~d~~~~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L~  367 (573)
                      |||+|.++++++||++.++|.++.. +.....|++|.
T Consensus       118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            9999999999999999999999953 66788999985

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.78  E-value=2e-18  Score=150.83  Aligned_cols=109  Identities=20%  Similarity=0.352  Sum_probs=96.0

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEE-EecC--CCcEEEEEEE
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  333 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~-v~~~--~~~~l~i~v~  333 (573)
                      ...|.|.|+|++|++|+. +..|.+||||++++.+.  ...+++|+++++++||+|||+|.|. +...  ....|.|+||
T Consensus        17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            457999999999999996 77889999999999653  3467899999999999999999999 6532  4579999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      |++.+++|++||++.++|.++..+.....|++|.+
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            99999999999999999999988888899999953

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=4.2e-18  Score=155.13  Aligned_cols=125  Identities=25%  Similarity=0.323  Sum_probs=104.0

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      ...+.|+|+|++|++|+..+..+.+||||++++.   +++++|+++++++||+|||+|.|.+..  .+.|.|+|||++.+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL  107 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence            4678999999999999944444559999999997   478999999999999999999999853  67999999999999


Q ss_pred             CCCCceEEEEEEccccCCC---ce--eEEEEEeeecccccCCCcceeEEEEEEEEeec
Q 008214          339 QSSELIGCAQVRLCELEPG---KV--KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~~---~~--~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~  391 (573)
                      ++|++||++.++|.++..+   ..  ...|+.|.+..   ......|+|.+.+.|.+.
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~---~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK---EPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS---CTTSEEEEEEEEEESEEC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC---CCCcccEEEEEEEeeeec
Confidence            9999999999999998432   22  26799997642   245678999999999874

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=3.2e-18  Score=148.63  Aligned_cols=104  Identities=25%  Similarity=0.497  Sum_probs=86.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|++|+..+..|.+||||++++..   ...+++|+++++|.||+|||+|.|.+.   +.....|.|+|||+
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~   96 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   96 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence            478999999999999999999999999999932   246889999999999999999999853   22457999999999


Q ss_pred             CCCC---CceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          521 DTFG---KDYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       521 ~~~~---~d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      +..+   +++||++.++|.++...+ ..+||+|+
T Consensus        97 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           97 ARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             -------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             CcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            9886   569999999999987765 78999984

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.77  E-value=6.2e-18  Score=155.15  Aligned_cols=121  Identities=28%  Similarity=0.499  Sum_probs=97.3

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc----eeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~  521 (573)
                      ..|.|.|+|++|++|+..+..|.+||||++++++..    .+++|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d~d   84 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDEN   84 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEECC
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEECC
Confidence            469999999999999999989999999999997422    57899999999999999999999984 4578999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeE-e-----EEEEcCCC-----CCeEEEEEEEEEec
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEY-T-----DCFELDGT-----KSGKLKLHLKWMPQ  567 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~-----~~G~i~l~l~~~p~  567 (573)
                      ..+. ++||++.|+|.++...... .     +||+|...     ..|+|+|+++|.|.
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            8865 6999999999999876443 2     89999743     37999999999986

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=5.6e-18  Score=151.50  Aligned_cols=107  Identities=30%  Similarity=0.477  Sum_probs=94.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~  523 (573)
                      .+.|.|+|++|++|+..+..+.+||||++++.. ...++||+++++|.||+|||+|.|.+...  ....|.|+|||++..
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  120 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  120 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence            478999999999999999889999999999953 23678999999999999999999988632  457899999999988


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      ++ ++||++.|+|.++..+....+||+|.+.
T Consensus       121 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          121 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             SCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            65 6999999999999877778999999864

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.77  E-value=5.2e-18  Score=147.89  Aligned_cols=117  Identities=23%  Similarity=0.384  Sum_probs=99.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC--
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG--  524 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~--  524 (573)
                      ...|+|+|++|++|+..+..|.+||||++++++...+++|+++++|.||.|||+|.|.+.+.  +.|.|+|||++..+  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK   81 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence            46899999999999999999999999999997545789999999999999999999999864  35999999999875  


Q ss_pred             --CceeEEEEEEcceeeec-CeEeEEEEcCCC-------CCeEEEEEEEEE
Q 008214          525 --KDYMGRCILTLTRVILE-GEYTDCFELDGT-------KSGKLKLHLKWM  565 (573)
Q Consensus       525 --~d~lG~~~i~l~~l~~~-~~~~~~~~L~~~-------~~G~i~l~l~~~  565 (573)
                        +++||++.|++.++... ....+|++|...       ..|+|+++++++
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence              47999999999988433 344688998643       279999999864

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.76  E-value=1.9e-18  Score=152.52  Aligned_cols=109  Identities=26%  Similarity=0.505  Sum_probs=93.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEe-c--cCCCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v-~--~~~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|++|+..+..+.+||||++++..   ...+++|+++++|.||+|||+|.|.+ .  +.....|.|+|||+
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~   99 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   99 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence            478999999999999999999999999999832   24678999999999999999999984 3  22457999999999


Q ss_pred             CCCC---CceeEEEEEEcceeeecCeEeEEEEcCCCCCe
Q 008214          521 DTFG---KDYMGRCILTLTRVILEGEYTDCFELDGTKSG  556 (573)
Q Consensus       521 ~~~~---~d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G  556 (573)
                      +..+   +++||++.|+|.++...+ ..+||+|.+...|
T Consensus       100 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g  137 (141)
T 1v27_A          100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG  137 (141)
T ss_dssp             CSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred             CCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence            9886   469999999999987655 7899999876554

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=4e-18  Score=150.42  Aligned_cols=108  Identities=31%  Similarity=0.471  Sum_probs=93.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEecc---CCCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|++|+..+..+.+||||++++.. ...++||++++++.||+|||+|.|.+..   .....|.|+|||++.
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~  104 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR  104 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence            478999999999999999889999999999953 3468899999999999999999998531   235789999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      .++ ++||++.|+|.++..+....+||+|.+..
T Consensus       105 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A          105 FSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             SSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             CCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            865 69999999999998877789999997654

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.76  E-value=3.7e-18  Score=152.00  Aligned_cols=108  Identities=23%  Similarity=0.503  Sum_probs=93.2

Q ss_pred             eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|++|+..+ ..+.+||||++++...   ..+++|+++++|.||+|||+|.|.+...  ....|.|+|||+
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            478999999999999887 5789999999999632   2488999999999999999999998753  345799999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      +..++ ++||++.++|.++..+....+||+|.+..
T Consensus       102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            98865 69999999999998777778999998753

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.76  E-value=2.3e-18  Score=153.93  Aligned_cols=105  Identities=16%  Similarity=0.153  Sum_probs=91.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---c-ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---S-ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~-~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~  520 (573)
                      .+.|+|+|++|+||+.++..|.+||||++++..   . ..++||+++++|.||+|||+|.|.+...  ....|.|+|||+
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~  121 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT  121 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence            478999999999999999999999999999964   1 2478999999999999999999998642  356899999999


Q ss_pred             CCCCC-ceeEEEEEEcceeee-cCeEeEEEEcC
Q 008214          521 DTFGK-DYMGRCILTLTRVIL-EGEYTDCFELD  551 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~-~~~~~~~~~L~  551 (573)
                      +..++ ++||++.|+|.++.. .....+||+|.
T Consensus       122 d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          122 DRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             CTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            98876 699999999999863 45668999985

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.75  E-value=7.7e-18  Score=149.02  Aligned_cols=106  Identities=30%  Similarity=0.479  Sum_probs=93.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~  523 (573)
                      .+.|.|+|++|++|+..+..+.+||||++++.. ...+++|+++++|.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  112 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence            478999999999999998888999999999942 23688999999999999999999998632  457999999999988


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      +. ++||++.++|.++..+....+||+|..
T Consensus       113 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            65 699999999999988878899999975

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=3.2e-18  Score=152.58  Aligned_cols=110  Identities=33%  Similarity=0.547  Sum_probs=94.8

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCCC
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  523 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~~  523 (573)
                      +.|.|+|++|++|+..+..+.+||||++++...   ..++||++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus        31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~  110 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  110 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCC
Confidence            679999999999999998899999999999642   3678999999999999999999998753 246899999999988


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCeEE
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL  558 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i  558 (573)
                      ++ ++||++.|+|.++... ..++||+|.+...|++
T Consensus       111 ~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          111 SRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             SCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred             CCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence            65 6999999999998765 4789999987655543

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.75  E-value=8.1e-18  Score=150.62  Aligned_cols=110  Identities=24%  Similarity=0.449  Sum_probs=92.0

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHD  521 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~  521 (573)
                      ..+.|.|+|++|++|+..+ .|.+||||++++..   ...+++|+++++|.||+|||+|.|.+... ....|.|+|||++
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  103 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA  103 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence            3589999999999999988 68999999999943   23578999999999999999999998421 2356999999999


Q ss_pred             CCC--CceeEEEEEEcceeee-cCeEeEEEEcCCCCCe
Q 008214          522 TFG--KDYMGRCILTLTRVIL-EGEYTDCFELDGTKSG  556 (573)
Q Consensus       522 ~~~--~d~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~G  556 (573)
                      ..+  +++||++.++|.++.. .....+||+|.+...|
T Consensus       104 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A          104 SQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             SSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             CCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            875  4699999999999975 5677899999876544

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.75  E-value=8.5e-18  Score=146.81  Aligned_cols=110  Identities=18%  Similarity=0.275  Sum_probs=92.8

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEE-ecc--CCCCEEEEEEEe
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWD  519 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~V~d  519 (573)
                      ..+.|.|+|++|+||+. +..|.+||||++++..   ...++||+++++|.||+|||+|.|. +..  .....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            46899999999999997 7788999999999932   2467899999999999999999999 763  245799999999


Q ss_pred             CCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCe
Q 008214          520 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG  556 (573)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G  556 (573)
                      ++..++ ++||++.++|.++..+....+||+|.+.+.|
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~g  134 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL  134 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC----
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccCC
Confidence            998875 6999999999999887788999999886544

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=2.4e-18  Score=152.11  Aligned_cols=107  Identities=27%  Similarity=0.507  Sum_probs=93.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc------------eeEeecccCCCCCCeeeeEEEEE-ec--cCCCCE
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSE------------TRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDM  512 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~------------~~~kT~~~~~t~nP~wne~f~f~-v~--~~~~~~  512 (573)
                      +.|.|+|++|++|+..+..|.+||||++++.+..            .++||+++++|.||+|||+|.|. +.  +.....
T Consensus        18 ~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~   97 (142)
T 1rh8_A           18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCE
Confidence            7899999999999999999999999999997532            35799999999999999999997 54  224679


Q ss_pred             EEEEEEeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          513 LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       513 L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      |.|+|||++..++ ++||++.|+|.++.......+||+|.+..
T Consensus        98 l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            9999999998875 69999999999997766778999998764

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=5.4e-18  Score=147.17  Aligned_cols=109  Identities=23%  Similarity=0.395  Sum_probs=90.1

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEec---CCCcEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVR  331 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~~l~i~  331 (573)
                      +....|.|.|+|++|++|+.++..|.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+..   .....|.|+
T Consensus        13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~   92 (129)
T 2bwq_A           13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT   92 (129)
T ss_dssp             EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred             EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence            345679999999999999999988999999999996532  468999999999999999999998532   245799999


Q ss_pred             EEeCCCCCC--CCceEEEEEEccccCCCceeEEEEEe
Q 008214          332 IYDDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       332 v~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      |||++..++  |++||++.++|.++.... .+.|++|
T Consensus        93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            999998876  999999999999987654 7899987

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=1.2e-17  Score=146.68  Aligned_cols=112  Identities=20%  Similarity=0.292  Sum_probs=95.9

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEE-EecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~-v~~~--~~~~l~i~v  332 (573)
                      +....|.|.|+|++|++|+.++.. +.+||||++++.+.+.+.++|+++++++||+|||+|.|. +...  ....|.|+|
T Consensus        17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V   96 (138)
T 1ugk_A           17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence            345789999999999999999985 899999999998655678999999999999999999996 5432  346899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCce-eEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~  368 (573)
                      ||++.+++|++||++.++|.++..+.. ...|++|.+
T Consensus        97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            999999999999999999999977644 456788854

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=2.9e-17  Score=144.25  Aligned_cols=105  Identities=19%  Similarity=0.204  Sum_probs=89.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC--cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|++   .+..|.+||||++++..  ...+++|+++++|.||+|||+|.|.+...  ....|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~  101 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence            4789999999993   57788999999999942  23468999999999999999999998643  35689999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      .++ ++||++.++|.++.......+||+|.+..
T Consensus       102 ~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A          102 FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            865 69999999999987666678999998754

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=8.8e-18  Score=148.44  Aligned_cols=107  Identities=30%  Similarity=0.429  Sum_probs=91.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|++|+..+..| +||||++++...   ..+++|+++++|.||+|||+|.|.+...  ....|.|+|||++
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  101 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG  101 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence            478999999999999999888 999999999531   2578999999999999999999998532  3458999999999


Q ss_pred             CCC--C-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          522 TFG--K-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       522 ~~~--~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      ..+  + ++||++.|+|.++.......+||+|.+.+
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A          102 GFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             CSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             CccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            764  3 59999999999987766778999997653

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.74  E-value=3.4e-18  Score=152.20  Aligned_cols=113  Identities=17%  Similarity=0.325  Sum_probs=98.4

Q ss_pred             ccCcceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR  331 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~  331 (573)
                      +....|.|.|+|++|++|+.++ ..+.+||||++++.+...  .+++|+++++++||+|||+|.|.+...  ....|.|+
T Consensus        18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~   97 (148)
T 3fdw_A           18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS   97 (148)
T ss_dssp             EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence            3457899999999999999888 578999999999986443  378999999999999999999998754  24579999


Q ss_pred             EEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      |||++.+++|++||++.++|.++..+.....|++|.+.
T Consensus        98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A           98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             EEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            99999988999999999999999777678899999754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.74  E-value=1e-17  Score=147.94  Aligned_cols=111  Identities=27%  Similarity=0.502  Sum_probs=97.2

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEE-EecC--CCcEEEEEE
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRI  332 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~-v~~~--~~~~l~i~v  332 (573)
                      ....|.|.|+|++|++|+.++..|.+||||++++.+..  ...++|++++++.||+|||+|.|. +...  ....|.|+|
T Consensus        25 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V  104 (142)
T 2chd_A           25 DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISV  104 (142)
T ss_dssp             EGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEE
T ss_pred             eCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEE
Confidence            35789999999999999999988999999999998432  367899999999999999999998 5422  236899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ||++.+++|++||++.++|.++..+.....|++|.+
T Consensus       105 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          105 CDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             EECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            999999899999999999999998888899998854

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=5.5e-18  Score=150.72  Aligned_cols=112  Identities=21%  Similarity=0.367  Sum_probs=96.2

Q ss_pred             ccCcceEEEEEEEEeeeccCC-CC------CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNK-DL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQH  327 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~  327 (573)
                      +....|.|.|+|++|++|+.+ +.      .+.+||||++++.+.+.++++|++++++.||+|||+|.|.+...  ....
T Consensus        21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~  100 (147)
T 2enp_A           21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT  100 (147)
T ss_dssp             EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred             EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence            346789999999999999984 43      35899999999986556789999999999999999999988642  2358


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      |.|+|||++.+++|++||++.++|.++..+.....|+.|.+
T Consensus       101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A          101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            99999999999999999999999999987777788998864

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=1.4e-17  Score=146.31  Aligned_cols=108  Identities=16%  Similarity=0.135  Sum_probs=93.6

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC-CCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEe
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d  334 (573)
                      ....|.|+|+|++|+   ++|..|.+||||++++.+. +...++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus        22 ~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d   98 (138)
T 1wfm_A           22 DCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT   98 (138)
T ss_dssp             ETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEE
Confidence            356899999999999   3677899999999999753 23468999999999999999999998644  35689999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      +|.+++|++||++.++|.++..+.....|++|.+
T Consensus        99 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A           99 CDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             CCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            9999999999999999999977777889999965

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=6.1e-18  Score=149.45  Aligned_cols=111  Identities=26%  Similarity=0.395  Sum_probs=95.5

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEE
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~  333 (573)
                      ....|.|.|+|++|++|+.++..| +||||++++.+.+.  .+++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus        20 ~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~   98 (142)
T 2dmg_A           20 SSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVK   98 (142)
T ss_dssp             ETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEE
T ss_pred             eCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEE
Confidence            356899999999999999999888 99999999975443  678999999999999999999998532  3458999999


Q ss_pred             eCCCCCC--CCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          334 DDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       334 d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      |++.++.  |++||++.++|.++..+.....|+.|.+.
T Consensus        99 d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A           99 NSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             ECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             ECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            9998753  57999999999999877778899999653

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=1.9e-17  Score=147.50  Aligned_cols=109  Identities=35%  Similarity=0.550  Sum_probs=95.5

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC-CCcEEEEEEEeCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~d~~  336 (573)
                      ..|.|+|+|++|++|+.++..+.+||||++++.+..  ..+++|++++++.||+|||+|.|.+... ....|.|+|||++
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            358899999999999999988999999999998532  4578999999999999999999998754 2458999999999


Q ss_pred             CCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      ..++|++||++.++|.++..+. .+.|++|.+.
T Consensus       109 ~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~  140 (149)
T 1a25_A          109 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  140 (149)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred             CCCCCCEEEEEEEEHHHhCcCc-cCCeEEccCC
Confidence            9989999999999999997764 7899999643

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=7e-18  Score=148.89  Aligned_cols=111  Identities=23%  Similarity=0.411  Sum_probs=95.3

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEE-e--cCCCcEEEEEE
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRI  332 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v-~--~~~~~~l~i~v  332 (573)
                      ....+.|.|+|++|++|+.++..+.+||||++++.+.  ..++++|++++++.||+|||+|.|.+ .  +.....|.|+|
T Consensus        17 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V   96 (141)
T 1v27_A           17 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   96 (141)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEE
T ss_pred             eCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEE
Confidence            3567999999999999999998999999999998542  24678999999999999999999984 3  22357999999


Q ss_pred             EeCCCCCC--CCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          333 YDDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       333 ~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      ||++..++  |++||++.++|.++.... ...|++|.+.
T Consensus        97 ~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~  134 (141)
T 1v27_A           97 WDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH  134 (141)
T ss_dssp             EEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred             EECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence            99999876  999999999999986654 7899999754

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=8.1e-17  Score=141.45  Aligned_cols=108  Identities=26%  Similarity=0.406  Sum_probs=90.9

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEE-eccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|++|+..+.. +.+||||++++.. ...+++|+++++|.||+|||+|.|. +...  ....|.|+|||++
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d  100 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence            47899999999999999885 8999999999963 2468999999999999999999996 6532  3469999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecC-eEeEEEEcCCCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEG-EYTDCFELDGTK  554 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~-~~~~~~~L~~~~  554 (573)
                      ..++ ++||++.++|.++.... ....|++|...+
T Consensus       101 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~  135 (138)
T 1ugk_A          101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             CCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence            8865 69999999999997754 346678987653

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.73  E-value=1.4e-17  Score=151.84  Aligned_cols=110  Identities=25%  Similarity=0.390  Sum_probs=96.1

Q ss_pred             cceEEEEEEEEeeeccCCCC-CCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEE-eC
Q 008214          260 PVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD  335 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~-d~  335 (573)
                      ..|.|.|+|++|++|+.+|. .|.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+.. ....|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            57999999999999999985 68999999999985332  37899999999999999999999853 4679999999 99


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEeeecc
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL  370 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  370 (573)
                      +.+++|++||++.++|.++..+.....|++|.+..
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence            99999999999999999998888889999997543

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.73  E-value=5e-17  Score=143.54  Aligned_cols=107  Identities=26%  Similarity=0.476  Sum_probs=92.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEE-eccC--CCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV-VEDG--LHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|++|+..+..|.+||||++++..   ...++||++++++.||+|||+|.|. +...  ....|.|+|||+
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  107 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE  107 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence            479999999999999999889999999999964   2368899999999999999999998 5421  236899999999


Q ss_pred             CCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      +..++ ++||++.++|.++..+.....|++|+..
T Consensus       108 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A          108 DKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             CTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             CCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            98876 6999999999999887777888888753

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.72  E-value=2.8e-17  Score=147.06  Aligned_cols=113  Identities=27%  Similarity=0.460  Sum_probs=95.9

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEEecC-CCcEEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIY  333 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~  333 (573)
                      +....|.|.|+|++|++|+..+ .|.+||||++++.+.  ...+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus        22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~  100 (153)
T 3fbk_A           22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW  100 (153)
T ss_dssp             EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence            4467899999999999999998 699999999999743  24578999999999999999999998422 2346999999


Q ss_pred             eCCCCCC-CCceEEEEEEccccCC-CceeEEEEEeeecc
Q 008214          334 DDEGIQS-SELIGCAQVRLCELEP-GKVKDVWLKLVKDL  370 (573)
Q Consensus       334 d~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~w~~L~~~~  370 (573)
                      |++.+++ |++||++.++|.++.. +.....|++|.+..
T Consensus       101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A          101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH  139 (153)
T ss_dssp             ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred             eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence            9998876 9999999999999974 67788999997643

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.72  E-value=3.9e-17  Score=148.89  Aligned_cols=105  Identities=25%  Similarity=0.386  Sum_probs=91.6

Q ss_pred             eEEEEEEEEeecCCCCCC-CCCCCcEEEEEEcCcc---eeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEE-eCCC
Q 008214          448 GVLSVTVILAENLPASDL-MGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT  522 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~-d~~~  522 (573)
                      +.|.|+|++|++|+..+. .|.+||||++++....   .++||+++++|.||+|||+|.|.+.. ....|.|+|| |++.
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEECST
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcCCC
Confidence            789999999999999985 6899999999996432   37899999999999999999999863 4679999999 9998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      .++ ++||++.|+|.++..+....+||+|.+.
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            866 6999999999999877778999999765

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=1.2e-16  Score=158.54  Aligned_cols=121  Identities=30%  Similarity=0.513  Sum_probs=105.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~  523 (573)
                      .+.|.|+|++|++|+..+..|.+||||+++++. ...+++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~   97 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF   97 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence            478999999999999999899999999999964 23578999999999999999999998642  457999999999987


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEec
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQ  567 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~  567 (573)
                      ++ ++||++.++|.++..+....+|++|.+.      ..|+|.+.++|.|.
T Consensus        98 ~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~  148 (284)
T 2r83_A           98 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT  148 (284)
T ss_dssp             SCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETT
T ss_pred             CCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCc
Confidence            65 7999999999999888888999999643      46999999999864

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=4.5e-17  Score=148.28  Aligned_cols=119  Identities=24%  Similarity=0.374  Sum_probs=99.8

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~  524 (573)
                      ...+.|.|+|++|++|+..+..+.+||||++++++  .++||+++++|.||+|||+|.|.+..  ...|.|+|||++..+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~--~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~  108 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLK  108 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC--EEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCC
Confidence            35689999999999999544445599999999986  88999999999999999999999863  789999999999886


Q ss_pred             C-ceeEEEEEEcceeeecC-----eEeEEEEcCCC-----CCeEEEEEEEEEec
Q 008214          525 K-DYMGRCILTLTRVILEG-----EYTDCFELDGT-----KSGKLKLHLKWMPQ  567 (573)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~-----~~~~~~~L~~~-----~~G~i~l~l~~~p~  567 (573)
                      + ++||++.++|.++....     ....|++|...     ..|+|.+.+++.+.
T Consensus       109 ~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          109 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            5 69999999999987532     23679999653     47999999999865

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=3.3e-18  Score=151.22  Aligned_cols=108  Identities=23%  Similarity=0.453  Sum_probs=94.2

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC-----------CeEEeeeeCCCCCceeccEEEEE-Eec--CCCc
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE-----------KTKKSKTINNDLNPIWNEHFEFI-VED--ESTQ  326 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~~T~~~~~~~nP~w~e~f~f~-v~~--~~~~  326 (573)
                      .|.|.|+|++|++|+.+|..|.+||||++++.+...           ..++|+++++++||+|||+|.|. +..  ....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            689999999999999999899999999999985432           25789999999999999999997 542  2467


Q ss_pred             EEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          327 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       327 ~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      .|.|+|||++.+++|++||++.++|.++..+.....|++|.+
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence            999999999999899999999999999977667789999964

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=3.5e-17  Score=145.45  Aligned_cols=108  Identities=23%  Similarity=0.323  Sum_probs=90.6

Q ss_pred             eeEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEE
Q 008214          447 RGVLSVTVILAENLPAS-DL------MGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAE  516 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~-~~------~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~  516 (573)
                      .+.|.|+|++|++|+.. +.      .+.+||||++++.. ...+++|++++++.||+|||+|.|.+...  ....|.|+
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~  104 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT  104 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence            47899999999999984 43      35799999999963 23578999999999999999999998632  24589999


Q ss_pred             EEeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          517 VWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       517 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      |||++..++ ++||++.|+|.++........|+.|.+..
T Consensus       105 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  143 (147)
T 2enp_A          105 VVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG  143 (147)
T ss_dssp             EECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCC
T ss_pred             EEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCC
Confidence            999998865 69999999999997776678999998653

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.71  E-value=1.5e-16  Score=143.41  Aligned_cols=108  Identities=27%  Similarity=0.458  Sum_probs=90.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+..|.+||||++++...   ..+++|+++++|.||.|||+|.|.+...  ....|.|+|||++
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  103 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence            4789999999999999998899999999999632   2478999999999999999999998643  3468999999999


Q ss_pred             CCCC-ceeEEEEEEccee----------ee--cCeEeEEEEcCCCC
Q 008214          522 TFGK-DYMGRCILTLTRV----------IL--EGEYTDCFELDGTK  554 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l----------~~--~~~~~~~~~L~~~~  554 (573)
                      ..+. ++||++.|++..+          ..  .....+||+|.+..
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A          104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             SSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             CCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            8865 6999999999853          22  23568999997653

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.71  E-value=6.5e-17  Score=145.76  Aligned_cols=113  Identities=31%  Similarity=0.448  Sum_probs=95.6

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +.+..|.|.|+|++|++|+..+..|.+||||++++.+.+.  ..++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V   99 (159)
T 1tjx_A           20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (159)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence            3457899999999999999999889999999999975332  468999999999999999999998643  245899999


Q ss_pred             EeCCCCCCCCceEEEEEEcccc------------CCCceeEEEEEeeec
Q 008214          333 YDDEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVKD  369 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~~~  369 (573)
                      ||++.+++|++||++.+++..+            .++.....|++|.+.
T Consensus       100 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A          100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             EECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence            9999999999999999999853            345567889998643

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.71  E-value=1.3e-16  Score=140.17  Aligned_cols=92  Identities=30%  Similarity=0.479  Sum_probs=80.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|++|+..+..|.+||||++++.+.   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~   94 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD   94 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence            4789999999999999998899999999999642   2478999999999999999999998643  2368999999999


Q ss_pred             CCCC-ceeEEEEEEccee
Q 008214          522 TFGK-DYMGRCILTLTRV  538 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (573)
                      ..++ ++||++.|++.++
T Consensus        95 ~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           95 KLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             SSSCCEEEEEEEESSSSC
T ss_pred             CCCCCcEEEEEEEccccC
Confidence            8865 6999999999974

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.70  E-value=7e-17  Score=141.83  Aligned_cols=98  Identities=24%  Similarity=0.444  Sum_probs=85.7

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecCC--CcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~~--~~~l~i~v  332 (573)
                      +....|.|.|+|++|++|+..+..|.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+....  ...|.|+|
T Consensus        11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V   90 (138)
T 3n5a_A           11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV   90 (138)
T ss_dssp             EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred             EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence            3457799999999999999999889999999999975332  4688999999999999999999986543  36899999


Q ss_pred             EeCCCCCCCCceEEEEEEcccc
Q 008214          333 YDDEGIQSSELIGCAQVRLCEL  354 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l  354 (573)
                      ||++..++|++||++.+++.++
T Consensus        91 ~d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           91 MDKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             EECCSSSCCEEEEEEEESSSSC
T ss_pred             EECCCCCCCcEEEEEEEccccC
Confidence            9999999999999999999865

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.69  E-value=3.9e-16  Score=141.64  Aligned_cols=106  Identities=29%  Similarity=0.472  Sum_probs=88.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|++|+..+..|.+||||++++...   ..+++|+++++|.||+|||+|.|.+...  ....|.|+|||++
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  115 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD  115 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence            4789999999999999998999999999999742   3688999999999999999999998643  3569999999999


Q ss_pred             CCCC-ceeEEEEEEcceeee------------cCeEeEEEEcCC
Q 008214          522 TFGK-DYMGRCILTLTRVIL------------EGEYTDCFELDG  552 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~------------~~~~~~~~~L~~  552 (573)
                      ..++ ++||++.|++.++..            ++...+|+.|.+
T Consensus       116 ~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~  159 (166)
T 2cm5_A          116 IGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  159 (166)
T ss_dssp             SSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             CCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCC
Confidence            8865 699999999998531            233466777654

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.69  E-value=1.9e-16  Score=143.70  Aligned_cols=111  Identities=24%  Similarity=0.398  Sum_probs=93.1

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +....|.|.|+|++|++|+.++..|.+||||++++.+..  ...++|+++++++||+|||+|.|.+...  ....|.|+|
T Consensus        32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V  111 (166)
T 2cm5_A           32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV  111 (166)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence            345789999999999999999988999999999998532  3678999999999999999999998643  356899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccC------------CCceeEEEEEee
Q 008214          333 YDDEGIQSSELIGCAQVRLCELE------------PGKVKDVWLKLV  367 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~------------~~~~~~~w~~L~  367 (573)
                      ||++.+++|++||++.+++.++.            ++.....|..|.
T Consensus       112 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~  158 (166)
T 2cm5_A          112 WDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ  158 (166)
T ss_dssp             EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred             EECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECC
Confidence            99999999999999999998752            344455666664

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.69  E-value=2.3e-16  Score=141.19  Aligned_cols=91  Identities=29%  Similarity=0.416  Sum_probs=74.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc---eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|++|+..+..|.+||||++++....   .++||+++++|.||+|||+|.|.+...  ....|.|+|||++
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d  108 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE  108 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence            47899999999999999988999999999995322   367999999999999999999998754  2468999999999


Q ss_pred             CCCC-ceeEEEEEEcce
Q 008214          522 TFGK-DYMGRCILTLTR  537 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~  537 (573)
                      ..++ ++||++.|++++
T Consensus       109 ~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          109 RGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             TTSCCEEEEEEEESTTC
T ss_pred             CCCCCcEEEEEEECCCC
Confidence            8865 699999999988

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.68  E-value=1.6e-16  Score=142.17  Aligned_cols=108  Identities=25%  Similarity=0.341  Sum_probs=84.2

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEEEecCC--CcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~v~~~~--~~~l~i~v  332 (573)
                      +....|.|.|+|++|++|+.++..|.+||||++++.+.+..  +++|+++++++||+|||+|.|.+....  ...|.|+|
T Consensus        25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V  104 (153)
T 1w15_A           25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV  104 (153)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence            34578999999999999999998899999999999753332  679999999999999999999987542  36899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      ||++.+++|++||++.+++.+  .+.....|+.|
T Consensus       105 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l  136 (153)
T 1w15_A          105 LDSERGSRNEVIGRLVLGATA--EGSGGGHWKEI  136 (153)
T ss_dssp             EECCTTSCCEEEEEEEESTTC--CSHHHHHHHHH
T ss_pred             EeCCCCCCCcEEEEEEECCCC--CchHHHHHHHH
Confidence            999999999999999999987  22333444444

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.65  E-value=1.1e-15  Score=132.50  Aligned_cols=118  Identities=21%  Similarity=0.311  Sum_probs=83.7

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      +.|.|.|+|++|+++..   .|.+||||+++ .    +..+|+++. ++.||+|||+|.|.+.+. ...|.|+|||+| .
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   72 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V----QNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   72 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e----cCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence            46899999999998852   57899999999 3    234555554 799999999999999864 457999999999 8


Q ss_pred             CCCCceEEEEEEccccCCCc--eeEEEEEeeecccccCCCccee-------EEEEEEEE
Q 008214          339 QSSELIGCAQVRLCELEPGK--VKDVWLKLVKDLDVQRDTKYRG-------QVHLELLY  388 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~~~~~~~~~G-------~i~l~l~~  388 (573)
                      ++|++||++.++|.++....  ....|.++..... ..+++..|       .+.+++.|
T Consensus        73 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           73 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAI-MADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CCSCCCCCEEEEEEEE
T ss_pred             CCCCeEEEEEEEHHHhhhcCCCCccccEEcccccc-cCCCcCcceECCCccEEEEEEEe
Confidence            89999999999999985432  2225655532211 12233333       47777766

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.64  E-value=6.1e-15  Score=156.56  Aligned_cols=170  Identities=19%  Similarity=0.289  Sum_probs=124.2

Q ss_pred             Eecccc-eeeEEEEEccccccC-CcchHHHHHHHHHHHHHhcccc-----ccee-eecCCCCC------------Cc-cc
Q 008214          198 SLREKK-KLDFKLKVVGGDIST-IPGLSDSIEATIHDAIEDSITW-----PVRK-IVPILPGD------------YS-EL  256 (573)
Q Consensus       198 ~f~~~p-~l~f~~~~~g~~~~~-iP~l~~~~~~~i~~~i~~~~~~-----P~~~-~ipl~~~~------------~~-~~  256 (573)
                      ++...| .|++.+.++. ++.. -+.-...++..+.+.|.+.-.+     |-.- ..++ .|.            .. .+
T Consensus       310 Sv~~~P~~I~~~l~PI~-~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l-~g~~C~C~C~~~~~t~~~~C  387 (540)
T 3nsj_A          310 SLPSNPGLVDYSLEPLH-TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKS-SHDSCQCECQDSKVTNQDCC  387 (540)
T ss_dssp             HTTTSCEEEEEEEEEGG-GGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEEC-SSCTTCEEESCTTTBCGGGC
T ss_pred             HHhhCCceEEEEEEEHH-HhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccC-CCCceEeeCCCCCCcccccc
Confidence            444445 5899998884 3322 2334456777777777776555     3110 1122 211            11 12


Q ss_pred             cc-CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec-CCCcEEEEEEEe
Q 008214          257 EL-KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYD  334 (573)
Q Consensus       257 ~~-~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~-~~~~~l~i~v~d  334 (573)
                      +. +..|.|+|+|++|++|+. |..|++||||+++++   ++.++|+++++++||+|||+|.|.+.+ ...+.|+|+|||
T Consensus       388 ~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D  463 (540)
T 3nsj_A          388 PRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWD  463 (540)
T ss_dssp             BSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEE
T ss_pred             cccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEE
Confidence            22 358999999999999998 989999999999997   567999999999999999999998653 356789999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      +|..++||+||++.++|.   .+ ..+.|+.|           ..|.|++.++.
T Consensus       464 ~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l-----------~~G~l~~~~~~  502 (540)
T 3nsj_A          464 ADYGWDDDLLGSCDRSPH---SG-FHEVTCEL-----------NHGRVKFSYHA  502 (540)
T ss_dssp             CCSSSCCEEEEEEEECCC---SE-EEEEEEEC-----------SSSEEEEEEEE
T ss_pred             CCCCCCCCEEEEEEEEee---CC-cEEEEEEc-----------CCeEEEEEEEE
Confidence            999889999999999987   23 46788876           24788877664

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.64  E-value=1.1e-15  Score=130.20  Aligned_cols=119  Identities=20%  Similarity=0.275  Sum_probs=101.9

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecC--CCcEEEEEEEeCCC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEG  337 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~  337 (573)
                      .-.|+|+|.+|.+|+     |++|||+++.+.   +.+++|++++ ++.||+|||.|.|.+..+  .+..|.+.|||+++
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FR---g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~   91 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK   91 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEET---TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEEe---ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence            346999999999998     689999999996   7889999998 799999999999998754  45689999999999


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeec
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~  391 (573)
                      ++++++||++.++|.++..+.....+..|...    +.....++|.+++.|.|.
T Consensus        92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~----n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD----NNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             TSCCEEEEEEEEESHHHHHHSEEEEEEEEECT----TSCEEEEEEEEEEEEEET
T ss_pred             ccCCCEEEEEEEEhHHhccCCeEEEeecccCC----CCCccccEEEEEEEecCC
Confidence            99999999999999999776666666666543    244566899999999984

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.63  E-value=8.6e-16  Score=165.26  Aligned_cols=120  Identities=22%  Similarity=0.416  Sum_probs=105.2

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      ...|.|+|+|++|++|+.+|..|.+||||+++++   .++++|+++++++||+|||+|.|.+.....+.|.|+|||+|.+
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~---~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMG---SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEEC---CeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            4679999999999999999999999999999996   6789999999999999999999999877778999999999999


Q ss_pred             CCCCceEEEEEEccccCCCce----eEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          339 QSSELIGCAQVRLCELEPGKV----KDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      ++|++||++.+++.++..+..    ...|+.+.        +...|+|++.+.+.
T Consensus       461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~--------~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH--------EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB--------SSSSCEEEEEEEEE
T ss_pred             CCCCceEEEEEEHHHhccccCCCCceeeeecCC--------CCCCceEEEEEEEE
Confidence            999999999999999966543    66888873        34679998888764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.63  E-value=1.7e-15  Score=150.88  Aligned_cols=121  Identities=30%  Similarity=0.477  Sum_probs=99.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~  523 (573)
                      .+.|.|+|++|++|+..+..|.+||||++++.. ...+++|+++++|.||.|||+|.|.+...  ....|.|+|||++.+
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~   98 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   98 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence            478999999999999999999999999999942 24678999999999999999999998632  345899999999988


Q ss_pred             CC-ceeEEEEEE-cceeee-cCeEeEEEEcCCC-----CCeEEEEEEEEEec
Q 008214          524 GK-DYMGRCILT-LTRVIL-EGEYTDCFELDGT-----KSGKLKLHLKWMPQ  567 (573)
Q Consensus       524 ~~-d~lG~~~i~-l~~l~~-~~~~~~~~~L~~~-----~~G~i~l~l~~~p~  567 (573)
                      ++ ++||++.++ +.++.. ......|++|...     ..|+|.+.++|.|.
T Consensus        99 ~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~  150 (296)
T 1dqv_A           99 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPT  150 (296)
T ss_dssp             SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETT
T ss_pred             CCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccc
Confidence            65 799999996 555443 2345789999642     36999999999764

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.62  E-value=2.9e-15  Score=161.11  Aligned_cols=119  Identities=30%  Similarity=0.501  Sum_probs=106.2

Q ss_pred             ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC
Q 008214          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~  524 (573)
                      ...+.|.|+|++|++|+..+..|.+||||++++++  .+++|+++++|.||.|||+|.|.+..+....|.|+|||++..+
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~--~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~  461 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS--QSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS  461 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC--eeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence            35689999999999999999999999999999975  7889999999999999999999998777789999999999987


Q ss_pred             C-ceeEEEEEEcceeeecCe----EeEEEEcCCCCCeEEEEEEEEE
Q 008214          525 K-DYMGRCILTLTRVILEGE----YTDCFELDGTKSGKLKLHLKWM  565 (573)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~G~i~l~l~~~  565 (573)
                      + ++||++.+++.++..+..    ...|++|.+...|+|++.+++.
T Consensus       462 ~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          462 PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            5 799999999999986543    6799999999999999988764

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.60  E-value=1.4e-14  Score=123.31  Aligned_cols=113  Identities=17%  Similarity=0.238  Sum_probs=97.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCCC
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK  525 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~~  525 (573)
                      .|+|.|.+|.+|+     |.+|||+++.+.+  .++||++++ ++.||+|||.|+|++..+  .++.|.|+|+|++.+++
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg--~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~   94 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRG--QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS   94 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETT--EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSC
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEec--cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccC
Confidence            6899999999998     5789999999975  899999998 699999999999999754  45799999999998876


Q ss_pred             -ceeEEEEEEcceeeecCeEeEEEEcCCCC----CeEEEEEEEEEecC
Q 008214          526 -DYMGRCILTLTRVILEGEYTDCFELDGTK----SGKLKLHLKWMPQP  568 (573)
Q Consensus       526 -d~lG~~~i~l~~l~~~~~~~~~~~L~~~~----~G~i~l~l~~~p~~  568 (573)
                       .+||.+.++|.++...+...-+-+|.+..    .+.|.++++|.|..
T Consensus        95 nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A           95 NKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAAD  142 (144)
T ss_dssp             CEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred             CCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCC
Confidence             59999999999999888877677775432    48999999999854

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.58  E-value=1.6e-14  Score=130.39  Aligned_cols=87  Identities=21%  Similarity=0.286  Sum_probs=73.8

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      +.|.|+|+|++|+++.   ..|.+||||+++ .    +..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||+| +
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   81 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V----QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   81 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-S
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE-e----cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-C
Confidence            4789999999999884   257899999999 3    235666665 699999999999999865 457999999999 8


Q ss_pred             CCCCceEEEEEEccccCC
Q 008214          339 QSSELIGCAQVRLCELEP  356 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~  356 (573)
                      ++|++||++.++|.++..
T Consensus        82 ~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           82 IWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             SCCEEEEEEEEEGGGSCB
T ss_pred             CCCceEEEEEEEHHHhcc
Confidence            899999999999999854

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.56  E-value=4.4e-15  Score=162.35  Aligned_cols=111  Identities=29%  Similarity=0.576  Sum_probs=100.7

Q ss_pred             ccCcceEEEEEEEEeeeccC---CCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY  333 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~  333 (573)
                      +..+.|.|+|+|++|++|+.   +|..|.+||||++++.+....+++|+++++++||+|||+|.|.+.....+.|.|+||
T Consensus        13 e~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~   92 (749)
T 1cjy_A           13 EHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLM   92 (749)
T ss_dssp             CCCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEE
T ss_pred             cCCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEE
Confidence            33678999999999999998   788899999999999865457899999999999999999999998877779999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      |+|.++ |++||++.++|.++..+.....|+.|.+
T Consensus        93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            999988 9999999999999988888899999954

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.55  E-value=3.4e-14  Score=123.09  Aligned_cols=88  Identities=24%  Similarity=0.312  Sum_probs=72.1

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~  524 (573)
                      ..+.|.|+|++|++++.   .|.+||||+++ +   +..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++ .+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~---~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~   73 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V---QNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LI   73 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E---TTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SS
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e---cCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CC
Confidence            45899999999998853   67899999999 3   233455554 699999999999999864 567999999999 65


Q ss_pred             C-ceeEEEEEEcceeeecC
Q 008214          525 K-DYMGRCILTLTRVILEG  542 (573)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~  542 (573)
                      . ++||++.|+|+++....
T Consensus        74 ~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           74 WDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             CEEEEEEEEEEGGGSCBCS
T ss_pred             CCCeEEEEEEEHHHhhhcC
Confidence            5 69999999999987553

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.54  E-value=7.1e-14  Score=148.42  Aligned_cols=114  Identities=26%  Similarity=0.291  Sum_probs=97.6

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEecc-CCCCEEEEEEEeCCCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFG  524 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~L~i~V~d~~~~~  524 (573)
                      ..+.|.|+|++|++|+. |..|.+||||++++++  .++||+++++++||+|||+|.|.+.+ ...+.|.|+|||+|..+
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~--~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~  468 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG--QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGW  468 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT--EEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSS
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC--EeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCC
Confidence            36899999999999998 8899999999999986  56999999999999999999998643 35778999999999886


Q ss_pred             C-ceeEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEEEecCC
Q 008214          525 K-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPI  569 (573)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~~p~~~  569 (573)
                      + |+||++.++|..    +....|++|+   .|.|+++++..-.+-
T Consensus       469 ~dD~LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~~c~p~  507 (540)
T 3nsj_A          469 DDDLLGSCDRSPHS----GFHEVTCELN---HGRVKFSYHAKCLPH  507 (540)
T ss_dssp             CCEEEEEEEECCCS----EEEEEEEECS---SSEEEEEEEEEECTT
T ss_pred             CCCEEEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEEEECCC
Confidence            6 799999999983    4567899876   488999888765443

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.52  E-value=1e-13  Score=150.63  Aligned_cols=124  Identities=17%  Similarity=0.309  Sum_probs=103.0

Q ss_pred             cceEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecC--CCCeEEeeeeCCC-CCceeccEEEEEEecCCCcEEEEEEEe
Q 008214          260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPL--PEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYD  334 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~~~~~~-~nP~w~e~f~f~v~~~~~~~l~i~v~d  334 (573)
                      ..+.|+|+|++|++|+..+.  .+.+||||++.+.+.  ...+++|++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999998874  688999999999632  2357899999887 999999999999987766799999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      +|..++|++||++.++|..|..|.   .|++|....+   .....|.|.+.+.+.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g---~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNG---DQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTS---CEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCc---CCCCceEEEEEEEEE
Confidence            999999999999999999998753   5888864321   222468888888773

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.49  E-value=3.2e-13  Score=121.77  Aligned_cols=114  Identities=19%  Similarity=0.181  Sum_probs=85.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~  525 (573)
                      .+.|.|+|++|++++.   .+.+||||++. .   +..||++++ ++.||+|||+|.|.+.+. ...|.|+|||++...+
T Consensus        13 ~~~L~V~V~~A~~l~~---~g~~DPYV~v~-~---~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d~~~d   84 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA---QEKFNTYVTLK-V---QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWD   84 (167)
T ss_dssp             CCEEEEEEEEEECSSC---GGGCEEEEEEE-E---TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECCSSCC
T ss_pred             eEEEEEEEEEEECCCC---CCCCCeEEEEE-e---cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECCCCCC
Confidence            5799999999998852   67899999999 3   234566665 699999999999999864 5679999999993334


Q ss_pred             ceeEEEEEEcceeeecC------eEeEEEEcC---CCC-------CeEEEEEEEEEecC
Q 008214          526 DYMGRCILTLTRVILEG------EYTDCFELD---GTK-------SGKLKLHLKWMPQP  568 (573)
Q Consensus       526 d~lG~~~i~l~~l~~~~------~~~~~~~L~---~~~-------~G~i~l~l~~~p~~  568 (573)
                      |+||++.|+|.++....      -...||.+.   +..       .+++.+.++|...+
T Consensus        85 d~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~~  143 (167)
T 2cjs_A           85 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPL  143 (167)
T ss_dssp             EEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCC
T ss_pred             ceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecCC
Confidence            79999999999986543      123455532   221       35577888876544

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.46  E-value=8.7e-14  Score=152.15  Aligned_cols=113  Identities=23%  Similarity=0.480  Sum_probs=99.3

Q ss_pred             eeeEEEEEEEEeecCCC---CCCCCCCCcEEEEEEcCc-ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214          446 IRGVLSVTVILAENLPA---SDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~---~~~~~~~dpyv~v~l~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~  521 (573)
                      ..+.|.|+|++|++|+.   .+..|.+||||++++++. ..++||+++++|.||+|||+|.|.+..+....|.|+|||++
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            46899999999999998   777889999999999742 36889999999999999999999998766789999999999


Q ss_pred             CCCCceeEEEEEEcceeeecCeEeEEEEcCCCCCeEEEE
Q 008214          522 TFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKL  560 (573)
Q Consensus       522 ~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l  560 (573)
                      ..++++||++.|+|.++..+....+|++|.+.  +++.+
T Consensus        96 ~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l  132 (749)
T 1cjy_A           96 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL  132 (749)
T ss_dssp             SSSCEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred             CCCCceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence            88866999999999999877777899999875  44444

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.44  E-value=1.2e-12  Score=142.17  Aligned_cols=117  Identities=21%  Similarity=0.311  Sum_probs=98.5

Q ss_pred             eeeEEEEEEEEeecCCCCCC--CCCCCcEEEEEEcC---cceeEeecccCCC-CCCeeeeEEEEEeccCCCCEEEEEEEe
Q 008214          446 IRGVLSVTVILAENLPASDL--MGKADPYVVLTMKK---SETRNKTRVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWD  519 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~---~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~L~i~V~d  519 (573)
                      ..+.|+|+|++|++|+..+.  .+.+||||++.+.+   ...++||++++++ .||+|||+|+|.+..+....|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56899999999999998873  68899999999954   2367899999997 999999999999987766799999999


Q ss_pred             CCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEEE
Q 008214          520 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWM  565 (573)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~~  565 (573)
                      ++..++ ++||++.|+|.++..+   .+|++|.+.     ..+.|.+.+++.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            998765 7999999999998653   358888543     257888888875

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.42  E-value=1.5e-14  Score=153.28  Aligned_cols=126  Identities=17%  Similarity=0.280  Sum_probs=23.4

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCC---CCceeccEEEEEEecCCCcEEEEEEEe
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND---LNPIWNEHFEFIVEDESTQHLVVRIYD  334 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~---~nP~w~e~f~f~v~~~~~~~l~i~v~d  334 (573)
                      .+..|.|+|+|++|++|+++|     ||||++++++  ....||++++++   .||+|||+|.|.+... ...|.++|||
T Consensus         7 ~r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~--~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d   78 (483)
T 3bxj_A            7 RRVDNVLKLWIIEARELPPKK-----RYYCELCLDD--MLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYR   78 (483)
T ss_dssp             EEEEECC----------------------------------------------------CCEECC---------------
T ss_pred             ceeccEEEEEEEEcCCcCCCC-----CCeEEEEECC--eEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEe
Confidence            367899999999999999776     9999999972  345789999998   9999999999987533 5789999999


Q ss_pred             C-C---CCCCCCceEEEEEEccccCCCceeEEEEEeeeccccc-------------------CCCcceeEEEEEEEEeec
Q 008214          335 D-E---GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-------------------RDTKYRGQVHLELLYCPF  391 (573)
Q Consensus       335 ~-~---~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-------------------~~~~~~G~i~l~l~~~p~  391 (573)
                      . |   ..++|++||++.+++.++..+...+.|++|.......                   +.....|.|++++.|.+.
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~  158 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM  158 (483)
T ss_dssp             ----------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred             cCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence            4 4   3678999999999999998888889999995432210                   122456999999999864

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.38  E-value=4e-14  Score=149.95  Aligned_cols=119  Identities=15%  Similarity=0.232  Sum_probs=25.1

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCC---CCCeeeeEEEEEeccCCCCEEEEEEEeC-C
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC---LNPIWNQTFDFVVEDGLHDMLIAEVWDH-D  521 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t---~nP~wne~f~f~v~~~~~~~L~i~V~d~-~  521 (573)
                      ..+.|+|+|++|++|+.++     ||||++++++ ....||+++++|   .||+|||+|+|.+... ...|.|+|||+ +
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~-~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d   81 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDD-MLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSD   81 (483)
T ss_dssp             EEECC---------------------------------------------------CCEECC------------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECC-eEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCC
Confidence            4688999999999999875     9999999975 346799999999   9999999999987543 57899999994 4


Q ss_pred             C---C-CCceeEEEEEEcceeeecCeEeEEEEcCCC---------------------------CCeEEEEEEEEEecCCC
Q 008214          522 T---F-GKDYMGRCILTLTRVILEGEYTDCFELDGT---------------------------KSGKLKLHLKWMPQPIY  570 (573)
Q Consensus       522 ~---~-~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~---------------------------~~G~i~l~l~~~p~~~~  570 (573)
                      .   . ++++||.+.|++.++..+...++||+|.+.                           ..|.|+++++|.+..+.
T Consensus        82 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vl  161 (483)
T 3bxj_A           82 KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSIL  161 (483)
T ss_dssp             -------------------------CCEECC--------------------------------------CEEEEEECCBC
T ss_pred             ccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeeeec
Confidence            2   3 347999999999999877777899999431                           24899999999988765


Q ss_pred             C
Q 008214          571 R  571 (573)
Q Consensus       571 ~  571 (573)
                      +
T Consensus       162 P  162 (483)
T 3bxj_A          162 P  162 (483)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.23  E-value=1.4e-11  Score=136.43  Aligned_cols=109  Identities=34%  Similarity=0.538  Sum_probs=94.7

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEEecCC-CcEEEEEEEeCC
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE  336 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~-~~~l~i~v~d~~  336 (573)
                      ..+.|.|+|++|++|..+|..|.+||||++++.+.  ...+++|+++++++||+|||+|.|.+.... ...|.++|||+|
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d  249 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  249 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence            35889999999999999999999999999999643  245789999999999999999999987543 457999999999


Q ss_pred             CCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      ..++|++||++.+++.++.... ...|+.+...
T Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~  281 (674)
T 3pfq_A          250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  281 (674)
T ss_dssp             SSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred             cccccccccccccchhhhccCC-cccceeeccc
Confidence            9999999999999999987654 4899998653

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.19  E-value=6.6e-11  Score=131.06  Aligned_cols=106  Identities=36%  Similarity=0.593  Sum_probs=91.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~  522 (573)
                      .+.|.|++.+|++|+..+..|.+||||++++..   ...+++|+++++|.||.|||+|.|.+... ....|.|+|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            478999999999999999999999999999932   23578999999999999999999998744 34579999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      .+. |+||.+.++++++...+ ..+||.|.+.
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~  281 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  281 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred             ccccccccccccchhhhccCC-cccceeeccc
Confidence            876 69999999999987654 4899998543

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.16  E-value=2.7e-10  Score=125.96  Aligned_cols=116  Identities=23%  Similarity=0.362  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--C--CeEEeeeeCC-CCCceeccE-EEEE-EecCCCcEEEEEEE
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--E--KTKKSKTINN-DLNPIWNEH-FEFI-VEDESTQHLVVRIY  333 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~--~~~~T~~~~~-~~nP~w~e~-f~f~-v~~~~~~~l~i~v~  333 (573)
                      .+.|.|+|++|++|+.+    .+||||+|.+.+.+  .  ++++|+++++ +.||+|||+ |.|. +..++...|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999853    68999999997322  2  4678999875 699999998 9998 77666678999999


Q ss_pred             eCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      |++    +++||++.+||..|..|-   .+++|....   ...-..++|.+.+.+..
T Consensus       725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~---g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNES---NRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEE
T ss_pred             ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCCC---CCCCCceEEEEEEEEEe
Confidence            985    789999999999998753   467775432   12334578888887763

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.15  E-value=2.6e-10  Score=126.81  Aligned_cols=115  Identities=19%  Similarity=0.308  Sum_probs=89.7

Q ss_pred             cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC---CCeEEee-eeC-CCCCceecc-EEEE-EEecCCCcEEEEEE
Q 008214          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSK-TIN-NDLNPIWNE-HFEF-IVEDESTQHLVVRI  332 (573)
Q Consensus       260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~-~~~-~~~nP~w~e-~f~f-~v~~~~~~~l~i~v  332 (573)
                      ..|.|.|+|++|++|+.    +.+||||+|.+.+.+   .++++|+ +++ ++.||+||| +|.| .+..++...|+|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46899999999999984    468999999996321   2367899 775 569999999 6999 88766667999999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      ||++    +++||++.+||..|..|   ..|++|....   ...-..+.|.+.+.+
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~~---g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG---YHHLCLHSES---NMPLTMPALFIFLEM  797 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE---EEEEEEECTT---CCEEEEEEEEEEEEE
T ss_pred             EEeC----CCccceEeeehhhcCCC---cEEEeccCCC---CCCCCceEEEEEEEE
Confidence            9986    79999999999999875   3577775422   122345777777765

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.15  E-value=2.1e-10  Score=127.59  Aligned_cols=116  Identities=16%  Similarity=0.309  Sum_probs=91.2

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CC-CeEEeeeeCC-CCCceecc-EEEEE-EecCCCcEEEEEEEe
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PE-KTKKSKTINN-DLNPIWNE-HFEFI-VEDESTQHLVVRIYD  334 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~-~~~~T~~~~~-~~nP~w~e-~f~f~-v~~~~~~~l~i~v~d  334 (573)
                      ...|.|+|++|++|+.    ..+||||+|.+.+.  +. .+++|+++++ +.||+||| +|.|. |..++...|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSD----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCcc----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            3479999999999985    36899999999742  22 3578999875 69999999 69998 766666789999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      +|    +++||++.+||..|..|-   .+++|....   ...-..|.|.+.+.+..
T Consensus       800 ~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~---g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSGY---HYVCLRNEA---NQPLCLPALLIYTEASD  845 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEE
T ss_pred             CC----ccEEeeEEEEHHHcCCCc---eEEEecCCC---CCccCceEEEEEEEEEe
Confidence            87    789999999999998753   457775432   12336789999998874

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.07  E-value=8.4e-10  Score=122.80  Aligned_cols=110  Identities=20%  Similarity=0.320  Sum_probs=87.3

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---c-ceeEeec-ccCC-CCCCeeee-EEEE-EeccCCCCEEEEEE
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---S-ETRNKTR-VVND-CLNPIWNQ-TFDF-VVEDGLHDMLIAEV  517 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~-~~~~kT~-~~~~-t~nP~wne-~f~f-~v~~~~~~~L~i~V  517 (573)
                      ..+.|.|+|++|++|+.    +.+||||++.+.+   . .+++||+ ++++ +.||+||| +|+| .+..+.-..|.|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46799999999999985    4689999999953   1 2367999 7765 69999999 6999 88766667999999


Q ss_pred             EeCCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEEE
Q 008214          518 WDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWM  565 (573)
Q Consensus       518 ~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~~  565 (573)
                      ||++   +++||++.|+|+.+..+   .+|++|.+.     ..+.|.|.++++
T Consensus       752 ~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          752 MEEG---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEeC---CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            9986   58999999999998643   446777443     246777777764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.06  E-value=7.8e-10  Score=123.00  Aligned_cols=110  Identities=22%  Similarity=0.291  Sum_probs=88.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc----ceeEeecccCC-CCCCeeee-EEEEE-eccCCCCEEEEEEEe
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVND-CLNPIWNQ-TFDFV-VEDGLHDMLIAEVWD  519 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~----~~~~kT~~~~~-t~nP~wne-~f~f~-v~~~~~~~L~i~V~d  519 (573)
                      ...|.|+|++|++|+..    .+||||++.+.+.    ..++||+++++ +.||+||| +|.|. |..+....|.|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            45899999999999853    5899999999641    13579999976 59999999 69998 776666789999999


Q ss_pred             CCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEEEe
Q 008214          520 HDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWMP  566 (573)
Q Consensus       520 ~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~~p  566 (573)
                      ++   +|+||++.++|+.+..+   .++++|.+.     ..|.|.|.+.+..
T Consensus       800 ~d---ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          800 EG---GKFVGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             TT---TEEEEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             CC---ccEEeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEEEEe
Confidence            87   68999999999998654   345677543     2588999888873

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.04  E-value=1.6e-09  Score=119.92  Aligned_cols=110  Identities=16%  Similarity=0.275  Sum_probs=88.2

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---c--eeEeecccCC-CCCCeeeeE-EEEE-eccCCCCEEEEEE
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---E--TRNKTRVVND-CLNPIWNQT-FDFV-VEDGLHDMLIAEV  517 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~--~~~kT~~~~~-t~nP~wne~-f~f~-v~~~~~~~L~i~V  517 (573)
                      ..+.|+|+|++|++|+..    .+||||++.+.+.   .  .++||+++++ +.||+|||+ |+|. +..+.-..|.|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V  723 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV  723 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE
Confidence            357899999999999853    5899999999641   1  5679999886 699999998 9998 8766667999999


Q ss_pred             EeCCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEEE
Q 008214          518 WDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWM  565 (573)
Q Consensus       518 ~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~~  565 (573)
                      ||++   +|+||++.++|+.+..+   .++++|.+.     ..+.|.+.+..+
T Consensus       724 ~D~d---ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~~~  770 (816)
T 3qr0_A          724 SEEN---GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIVAK  770 (816)
T ss_dssp             EETT---SCEEEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EecC---CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEEEE
Confidence            9985   58999999999998654   346777543     247788877776

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.99  E-value=9e-09  Score=84.93  Aligned_cols=112  Identities=14%  Similarity=0.220  Sum_probs=86.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce--eEee-cccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET--RNKT-RVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~kT-~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~  523 (573)
                      ...|+|.+.++.--+........||||.+.+.....  ..+| ..+++|..|.||++|.-.+.+  ...|+|.|++... 
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence            467888887766433222334689999999863111  2244 667889999999999999985  5689999996554 


Q ss_pred             CCceeEEEEEEcceeee-----cCeEeEEEEcCCCCCeEEEEEEEEE
Q 008214          524 GKDYMGRCILTLTRVIL-----EGEYTDCFELDGTKSGKLKLHLKWM  565 (573)
Q Consensus       524 ~~d~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~G~i~l~l~~~  565 (573)
                        ++++.++|++.++..     ++..+-|+.|++  .|+|++.++|-
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence              899999999999984     356689999988  79999999875

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.92  E-value=1.8e-08  Score=83.09  Aligned_cols=113  Identities=12%  Similarity=0.224  Sum_probs=83.5

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC-CCeEEe-eeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~~T-~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      .+-|+|.+.++.--+-+......||||.+.+...- ....+| .+++.|..|+||++|.-.+++  .+.|.+.|++... 
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence            45678887665432212223468999999996210 112354 667889999999999888874  6789999997553 


Q ss_pred             CCCCceEEEEEEccccC-----CCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          339 QSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                         ++++.|.+++.+|.     .+...+.|+.|          ++.|+|++.+.|+
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdL----------eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDL----------QPQAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC----------BSSCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEec----------ccCcEEEEEEEEe
Confidence               89999999999995     45677999998          4579999999886

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.88  E-value=1.7e-08  Score=84.40  Aligned_cols=114  Identities=14%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             eeeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcCcc--eeEee-cccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214          446 IRGVLSVTVILAENLPASD-LMGKADPYVVLTMKKSE--TRNKT-RVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~--~~~kT-~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~  521 (573)
                      ..+.|+|.+.+..--+... .....||||.+.+....  ...+| ..+++|..|.||++|.-.+.+  ...|+|.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence            3567888887776544332 12357999999986321  12455 556779999999999999885  568999999554


Q ss_pred             CCCCceeEEEEEEcceeeec-----CeEeEEEEcCCCCCeEEEEEEEEEe
Q 008214          522 TFGKDYMGRCILTLTRVILE-----GEYTDCFELDGTKSGKLKLHLKWMP  566 (573)
Q Consensus       522 ~~~~d~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~G~i~l~l~~~p  566 (573)
                      .   ++++.++|++.+|..+     +..+.|+.|++  .|+|++.++|.-
T Consensus        86 ~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~~  130 (138)
T 2enj_A           86 V---DLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYFL  130 (138)
T ss_dssp             C---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEECC
T ss_pred             C---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEEE
Confidence            3   8999999999999843     55689999988  799999999863

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.83  E-value=2.7e-08  Score=83.15  Aligned_cols=113  Identities=17%  Similarity=0.322  Sum_probs=83.8

Q ss_pred             ceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecC-CCCeEEe-eeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214          261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPL-PEKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~-~~~~~~T-~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      .+-|+|.+.+..--+-.. .....||||.+.+... .....+| .+++.|..|+|||+|.-.|+  ..+.|.|.|++...
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~--~Gr~l~i~Vfh~a~   86 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN--KGRVMQIIVKGKNV   86 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC--SSCEEEEEEECSSC
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE--CCeEEEEEEEcCCC
Confidence            466888876665433221 1235899999999631 0012556 55677899999999988777  46789999996543


Q ss_pred             CCCCCceEEEEEEccccC-----CCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          338 IQSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                          +++..|.+++.+|.     .+...+.|+.|          ++.|+|++.+.|+
T Consensus        87 ----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL----------eP~Gkl~v~i~~~  129 (138)
T 2enj_A           87 ----DLISETTVELYSLAERCRKNNGKTEIWLEL----------KPQGRMLMNARYF  129 (138)
T ss_dssp             ----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC----------BSSCEEEEEEEEC
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEEEec----------ccCcEEEEEEEEE
Confidence                89999999999996     45667999998          4579999999996

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=93.52  E-value=1.4  Score=40.32  Aligned_cols=55  Identities=22%  Similarity=0.253  Sum_probs=40.1

Q ss_pred             eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCC----CCCCceEEEEEEcc
Q 008214          298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI----QSSELIGCAQVRLC  352 (573)
Q Consensus       298 ~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~----~~d~~lG~~~i~l~  352 (573)
                      .++|.+...+.+|.|+|++.+.+...  ....|.|.+++....    ..+..+|.+.+||-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            57888888899999999999888644  456899999876532    12245677666653

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=90.60  E-value=2  Score=36.96  Aligned_cols=126  Identities=11%  Similarity=0.124  Sum_probs=85.7

Q ss_pred             CcceEEEEEEEEeeeccCC-CCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC-------CCcEEEE
Q 008214          259 KPVGTLEVKLVQAKGLTNK-DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVV  330 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~-------~~~~l~i  330 (573)
                      +..+.+.|+|.++.--+.. ...+..+|..-+.+.-.+-+...|.+.. +.+|.+|.+-.|.|...       .+..+.+
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            5678899999887631110 0123457888777765556677787766 78999999988888532       2447889


Q ss_pred             EEEeCCCCCCCCceEEEEEEccccCCCc-eeEEEEEeeecccccCCC-cceeEEEEEEEEee
Q 008214          331 RIYDDEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDT-KYRGQVHLELLYCP  390 (573)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~-~~~G~i~l~l~~~p  390 (573)
                      +++.... ..-+.+|.+.|++.++...+ ......+|...    ..+ ..-|.|.+.+++..
T Consensus        94 ELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~----~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           94 EVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGT----KGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBS----SSCCTTSEEEEEEEEEEE
T ss_pred             EEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcC----CCCcceEEEEEEEEEEec
Confidence            9988754 35679999999999985332 23344555422    122 57899999988763

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=89.66  E-value=5  Score=36.56  Aligned_cols=91  Identities=13%  Similarity=0.187  Sum_probs=58.9

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-----------------cceeEeecccCCCCCCeeeeEEEEEeccC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-----------------SETRNKTRVVNDCLNPIWNQTFDFVVEDG  508 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----------------~~~~~kT~~~~~t~nP~wne~f~f~v~~~  508 (573)
                      .+..|+|++.++. +.........|--|++.+..                 ....++|.+...+.+|.|+|++.+.+...
T Consensus        25 ~RNdLYVtl~~g~-F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YHnk~P~w~EtIKi~LP~~  103 (220)
T 3l4c_A           25 VRNDIYVTLVQGD-FDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAIPIE  103 (220)
T ss_dssp             -CEEEEEEEEEEE-CCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTTCSSCCCCEEEEEEECTT
T ss_pred             CcccEEEEeeEeE-ECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEcCCCCCceEeEEEeeChh
Confidence            3567788877773 43322222334445444410                 01357888888899999999999988733


Q ss_pred             --CCCEEEEEEEeCCCCC---C--ceeEEEEEEcce
Q 008214          509 --LHDMLIAEVWDHDTFG---K--DYMGRCILTLTR  537 (573)
Q Consensus       509 --~~~~L~i~V~d~~~~~---~--d~lG~~~i~l~~  537 (573)
                        .+..|.++++......   +  ..+|.+.++|-+
T Consensus       104 ~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A          104 DVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             hcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence              4568999998765421   1  368999999864

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=89.57  E-value=1.5  Score=37.72  Aligned_cols=120  Identities=16%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             eeeEEEEEEEEeecCCCC-CCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC-------CCCEEEEE
Q 008214          446 IRGVLSVTVILAENLPAS-DLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG-------LHDMLIAE  516 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~-~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~-------~~~~L~i~  516 (573)
                      ..+.+.++|.++.--+.. ...+..+|+.-+++.- .-..+.|.+++ +.+|.+|-+-.|.|.-.       ....+.++
T Consensus        16 gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lE   94 (156)
T 2yrb_A           16 GENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLE   94 (156)
T ss_dssp             SCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEE
T ss_pred             CCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEE
Confidence            458899999998632211 0122346666655532 12455666654 78999999988888521       23478888


Q ss_pred             EEeCCCCCCceeEEEEEEcceeeecCe-EeEEEEcCCC-----CCeEEEEEEEEEe
Q 008214          517 VWDHDTFGKDYMGRCILTLTRVILEGE-YTDCFELDGT-----KSGKLKLHLKWMP  566 (573)
Q Consensus       517 V~d~~~~~~d~lG~~~i~l~~l~~~~~-~~~~~~L~~~-----~~G~i~l~l~~~p  566 (573)
                      +.......-..+|.+.|+|.+++.... .....+|.+.     .-|.|...++++.
T Consensus        95 Lhqa~g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           95 VHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEECSSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred             EEEeeCCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence            877643212589999999999996543 5555566432     4688998888863

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=86.34  E-value=3.2  Score=46.68  Aligned_cols=89  Identities=16%  Similarity=0.176  Sum_probs=61.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc----eeEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEe
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWD  519 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d  519 (573)
                      ...+.|+|.++.++...   ...+-||.+.+-.+.    ....|..+....+|.|||-++|++.   -|.+..|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            46899999999998754   346778887773222    2334555555778999999999875   3567899999998


Q ss_pred             CCCC--C----------C-ceeEEEEEEccee
Q 008214          520 HDTF--G----------K-DYMGRCILTLTRV  538 (573)
Q Consensus       520 ~~~~--~----------~-d~lG~~~i~l~~l  538 (573)
                      ....  +          . ..+|.+.++|-+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECC
Confidence            5221  1          2 3899999999764

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=80.90  E-value=9  Score=43.56  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc----eeEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEe
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWD  519 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d  519 (573)
                      ...+.|+|.++.++.... ....+-||++.+-.+.    ...+|+.+. ..+|.|||-.+|.+.   -|....|-|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            468899999998886432 2346789998884322    233454433 567889999999874   3567899999998


Q ss_pred             CCCC--C--C-ceeEEEEEEccee
Q 008214          520 HDTF--G--K-DYMGRCILTLTRV  538 (573)
Q Consensus       520 ~~~~--~--~-d~lG~~~i~l~~l  538 (573)
                      ....  +  . ..||.++++|-+.
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCT
T ss_pred             ecCccCcccccceeEEeeeeeEcc
Confidence            6542  1  2 3799999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	573
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-26
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-22
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	8e-23
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-22
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-21
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-15
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-21
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-17
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-21
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-19
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-19
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	5e-17
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	8e-16
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-16
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-16
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-13
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-15
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-15
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-15
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	6e-15
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-15
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-13
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-14
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-14
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-14
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	5e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-13
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	4e-14
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	5e-12
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	9e-14
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	5e-12
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-11
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-10
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	4e-09

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (256), Expect = 1e-26
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 10/138 (7%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
            P GTLEV LV AKGL + D +   DPY  L  R   +K+  ++ +     P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMG--TTPEWNETFIF 64

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLVKDLDVQRDTK 377
            V + +   L  +I+D +     + +G A + L  +   G +      +VKD       +
Sbjct: 65  TVSEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE------E 117

Query: 378 YRGQVHLELLYCPFGMEN 395
           Y+G++ + L + P G  +
Sbjct: 118 YKGEIWVALSFKPSGPSS 135

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.6 bits (224), Expect = 3e-22
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
            G L V ++ A+ L  +D +   DPYV LT +  + +           P WN+TF F V 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQK-SNVAEGMGTTPEWNETFIFTVS 67

Query: 507 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCF---ELDGTKSGKLKLHL 562
           +G  ++   +++D D   +D  +G   + L  V +EG           D    G++ + L
Sbjct: 68  EGTTELKA-KIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126

Query: 563 KWMPQ 567
            + P 
Sbjct: 127 SFKPS 131

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 8e-23
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 262 GTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
               V +++A  +T     D++   DPY  LF+   P+  K+++  NND+NP+WNE FEF
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 378
           I++      L + +  D      E +G A   +  ++ G+ K+V            +   
Sbjct: 63  ILDPNQENVLEITLM-DANYVMDETLGTATFTVSSMKVGEKKEVPFIF--------NQVT 113

Query: 379 RGQVHLELLYCP 390
              + + L    
Sbjct: 114 EMVLEMSLEVAS 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (223), Expect = 3e-22
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 450 LSVTVILAENLP---ASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDFVV 505
            +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +NP+WN+TF+F++
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 506 EDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM 565
           +    ++L   + D +    + +G    T++ + +  +    F  +      L++ L+  
Sbjct: 65  DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA 124

Query: 566 P 566
            
Sbjct: 125 S 125

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 2e-21
 Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
           ++K VG L+VK+++A  L   D  GKSDP+ +L +        ++ T+  +LNP WN+ F
Sbjct: 1   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWNKVF 57

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
            F ++D     L V ++D++G +  + +G   + L  +  G+     LK         + 
Sbjct: 58  TFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-----EQ 111

Query: 377 KYRGQVHLEL 386
            ++G ++LE+
Sbjct: 112 AFKGVIYLEM 121

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 3e-15
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKD 63

Query: 508 GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL-----DGTKSGKLKLH 561
               + +  V+D D     D++G+  + L    +     +C+ L     +    G + L 
Sbjct: 64  IHDVLEV-TVFDEDGDKPPDFLGKVAIPLLS--IRDGQPNCYVLKNKDLEQAFKGVIYLE 120

Query: 562 LKWM 565
           +  +
Sbjct: 121 MDLI 124

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.3 bits (218), Expect = 2e-21
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.9 bits (191), Expect = 1e-17
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V +I A  LPA D+ G +DPYV +  +   + + +T+V    LNP++N+ F F V
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92

Query: 506 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 551
              +     L+  V+D D F K D +G   + +  V       +  +L 
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.1 bits (215), Expect = 4e-21
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVV---LTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
           R VL V V  A+NL   D  G +DPYV    +   KSE++ KT+ +   LNP WN+TF F
Sbjct: 14  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73

Query: 504 VVEDGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 557
            +++   D  L  E+WD D   + D+MG     ++ +   G     F+L   + G+
Sbjct: 74  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 128

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.2 bits (205), Expect = 1e-19
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF- 318
             L V +  AK L   D  G SDPY  L + P P  E  +K+KTI   LNP WNE F F 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           + E +  + L V I+D +    ++ +G     + EL+   V D W KL
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKL 121

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 3e-19
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 13  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72

Query: 504 VV---EDGLHDMLIAEVWDHDTFGK---DYMGRCILTLTRVILEGE 543
                 +    ML   +WD     +   +++G  ++ L   +L+ E
Sbjct: 73  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 118

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 5e-17
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK--KSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P        ++KT+   L P WN+ F + 
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 320 V---EDESTQHLVVRIYDDEGIQSS--ELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   ++    E +G   + L           W KL
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.0 bits (181), Expect = 2e-16
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDF 503
              L+V V+ A +LP SD+ G +DPYV + +    K  ++ KT V     N ++N+ F F
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 504 VV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 538
            +  E      +   V D +   + + +GR +L  T  
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.4 bits (177), Expect = 8e-16
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            TL V +++A+ L   D+ G SDPY  + +    ++  K KT       N ++NE F F 
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           +  ES +   +   + D E    +E+IG   +       G     W ++  
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD 123

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.4 bits (179), Expect = 4e-16
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-----------KKSKTINNDLNP 310
           G L + ++QA+ L  +D  G SDP+  +++ P   +            +++K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 311 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            WN+   +     E    + L V ++D +   S++ +G   + L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.3 bits (171), Expect = 4e-15
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM------------KKSETRNKTRVVNDCLN 494
            G L + ++ A NL   D  G +DP+V + +              +E + +T+ V   LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 495 PIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 550
           P WNQT  +     E  +   L   VWD+D F   D++G  ++ L+           + L
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

Query: 551 -DGTKS 555
            + T+S
Sbjct: 137 KEQTES 142

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 6e-16
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L++ ++ AK   NK       PY  + V     ++KK++  NN  +P W +    IV 
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDTKY 378
                 L  R++  + ++S  L+G A + + E       K+++V + L +    +  T+ 
Sbjct: 63  P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTL-QLGGDKEPTET 119

Query: 379 RGQVHLEL 386
            G + + L
Sbjct: 120 IGDLSICL 127

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 3e-13
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           +  L +TVI A+            PYV +T+     + +    N+  +P W Q    +V 
Sbjct: 5   KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE--KCNNTNSPKWKQPLTVIVT 62

Query: 507 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILE 541
                     VW H T   D  +G   L +   +  
Sbjct: 63  PVSKLHF--RVWSHQTLKSDVLLGTAALDIYETLKS 96

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.7 bits (175), Expect = 1e-15
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 259 KPVGTLEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWN 313
           +P   L V+++  + L   NK+     DP  ++ +  +   T   +T    NN  NP W+
Sbjct: 2   RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             FEF V       +   + D +    ++ IG + +    L+ G      + L
Sbjct: 61  MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHL 110

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 450 LSVTVILAENLP--ASDLMGKADPYVVLTM---KKSETRNKTRVV-NDCLNPIWNQTFDF 503
           L V +I  + LP    +     DP V++ +    +     +T V+ N+  NP W+  F+F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 504 VVEDGLHDMLIAEVWDHDTFGKDY-MGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHL 562
            V      ++   V D+D+  K+  +G+  +    +     +      +G +     L +
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 125

Query: 563 K 563
           K
Sbjct: 126 K 126

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 1e-15
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
               V + +A+GL   D     SDPY  + + P  +   K++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 321 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368
                     L   I   +     ++IG   + L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 6e-15
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGK-ADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFV 504
           R    V +  A  LPA D     +DPY+ +T + + + + KTRV+   L+P +++TF F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 505 V---EDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVIL-EGEYTDCFELDGTKS 555
                      L   +   D F +D  +G  ++ L+ + L EG+     E+    S
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.0 bits (173), Expect = 4e-15
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF 503
            G L+V ++ A+NL   D+ G +DPYV + + ++  R    KT +  + LNP +N++F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 504 VV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 543
            V  E      ++  V D+D  GK D +G+  +       E  
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR 126

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++   KK+    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           V  E  Q   +VV + D + I  ++ IG   V             W  ++ +  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE--LRHWSDMLANPR 136

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.1 bits (168), Expect = 1e-14
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
           +G L V +I   +L A D  G +DP+V L +      + ++KT++    LNP +N+ F +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 504 VV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 533
            +   D     L   VWD+D     DY+G C L
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 106

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
           G L V +++   L   D  G SDP+  L+++P   K  K  ++     LNP +NE F + 
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           +   D + + L + ++D +  +S++ IG  Q+ +     G+    W + +K+ D
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 126

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.7 bits (167), Expect = 2e-14
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
            G+L+VT+I A NL A DL G +DPYV  ++    +   + KT +  + LNP +N+   F
Sbjct: 19  AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 78

Query: 504 VV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 542
            V  E   +  L   V D+D  G  + +G C +        G
Sbjct: 79  DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 120

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.1 bits (163), Expect = 5e-14
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++A  L   DL G SDPY    +     + KK KT    N LNP +NE   F 
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           V  E      L + + D + I  +E+IG  +V     +P   ++ W +++ 
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 129

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 68.4 bits (166), Expect = 2e-14
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 444 VIIRGVLSVTVILAENLPASDLM-----------GKADPYVVLTMKKSETRNKTRVVNDC 492
           V+  G+L + +  A +L  +                 DPY+ L +  S    +T      
Sbjct: 2   VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKT 60

Query: 493 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRVILEGEYTDCFELD 551
            +P W+  F   V +G    L   V+     G  D++  C +    ++  G       +D
Sbjct: 61  NSPAWHDEFVTDVCNGRKIEL--AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 552 GTKSGKLKLHLKWMP 566
               GK+ + +    
Sbjct: 119 LEPEGKVYVIIDLSG 133

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 27/142 (19%)

Query: 262 GTLEVKLVQAKGLTNKDL-----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 310
           G L++K+ +A  L                    DPY  L V     +  ++ T     +P
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKTNSP 63

Query: 311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVK 368
            W++ F   V +     L V      G    + +    ++  EL     +  + W+ L  
Sbjct: 64  AWHDEFVTDVCNGRKIELAVFHDAPIGYD--DFVANCTIQFEELLQNGSRHFEDWIDLEP 121

Query: 369 DLDVQRDTKYRGQVHLELLYCP 390
                      G+V++ +    
Sbjct: 122 ----------EGKVYVIIDLSG 133

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 4e-14
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
             L V  ++A      +  G  D Y    V       + ++      L+  W E     +
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E+  T  L + +   +      + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 5e-12
 Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 10/117 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM--KKSETRNKTRVVNDCLNPIWNQTFDFV 504
           +  L VT + A      +  G  D YV  ++  +      +T +    L+  W +     
Sbjct: 25  KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 505 VEDGLHDMLIAEVWDHDTFG---KDYMGRCILTLTRVILEGEYTDCFELD--GTKSG 556
           + +         +              G   L L    +        EL   G  SG
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 9e-14
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
            +L V V  A+   A     K + YV L ++    ++ T  V     P W Q F F +  
Sbjct: 2   SLLCVGVKKAKFDGA---QEKFNTYVTLKVQN--VKSTTIAVR-GSQPSWEQDFMFEINR 55

Query: 508 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE 543
               + + EVW+        +G   + L  +    E
Sbjct: 56  LDLGLTV-EVWNKGLIWDTMVGTVWIPLRTIRQSNE 90

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V + +AK    ++   K + Y  L V+      K +        P W + F F +   
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVKSTTIAVRGSQPSWEQDFMFEINRL 56

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
               L V ++ ++G+    ++G   + L  +     +    WL L     +  D++  G 
Sbjct: 57  -DLGLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA-IMADSEICGT 113

Query: 382 V 382
            
Sbjct: 114 K 114

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.1 bits (147), Expect = 5e-12
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVL-TMKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V ++ A +LPA D  G +DPYV +  +   + + +T+V    LNPI+N+TF F V
Sbjct: 17  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 76

Query: 506 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG 556
              +     L   V+D D F + D +G+ +L     + E         D  + G
Sbjct: 77  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG 130

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           L ++    E          + P+  + MK    ++           + P W  TFD  + 
Sbjct: 5   LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 507 DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP 566
           +G    ++      D   +  +G  +L        G+     +L      K+ + +++  
Sbjct: 65  EGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL 122

Query: 567 Q 567
           +
Sbjct: 123 E 123

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 22/116 (18%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMK------KSETRNKTRVVNDCLNPIWNQT--F 501
           LS+TVI  + L           YV + +       K   R K     + +NP+W +    
Sbjct: 3   LSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 502 DFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLT-------RVILEGEYTDCFEL 550
              +       L   V +       ++G  I+ +         + L  E      +
Sbjct: 59  FEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGYHHLCLHSESNMPLTM 111

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 4e-09
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-----INNDLNPIWNEH-- 315
           TL + ++  + L+ +        Y  + +  LP   K+          N +NP+W E   
Sbjct: 2   TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57

Query: 316 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
               +       L V + ++      + +G   + +  L  G
Sbjct: 58  VFEKILMPELASLRVAVMEEGN----KFLGHRIIPINALNSG 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	573
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.85
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.85
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.81
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.8
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.79
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.78
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.78
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.77
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.76
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.74
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.74
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.73
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.73
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.72
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.7
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.7
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.7
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.69
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.69
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.68
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.68
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.68
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.66
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.65
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.65
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.64
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.64
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.59
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.59
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.58
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.55
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.38
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.32
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	93.81
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	87.29

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.1e-22  Score=168.47  Aligned_cols=122  Identities=29%  Similarity=0.548  Sum_probs=106.4

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~  338 (573)
                      ++.|.|+|+|++|++|+.++..|.+||||+++++   +++++|++++++.||.|||+|.|.+.++. +.|.|+|||++..
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~~L~i~V~d~~~~   78 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDIH-DVLEVTVFDEDGD   78 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCTT-CEEEEEEEEEETT
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC---CeEEEEEeeCCceeEEEEEEEEEEEeccC-ceeEEEEEEccCC
Confidence            5789999999999999999999999999999997   67899999999999999999999998654 6899999999998


Q ss_pred             CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214          339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (573)
Q Consensus       339 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~  389 (573)
                      ++|++||++.++|.++..+.  ..|+.|...   ......+|+|++++++.
T Consensus        79 ~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK---DLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEECCBCEEEGGGCCSSC--CEECCCBCS---CTTSCCSSEEEEEEEEE
T ss_pred             cCcceEEEEEEEHHHCCCCC--ceEEEcccc---CCCCceeEEEEEEEEEE
Confidence            89999999999999997765  467776432   22456779999999885

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=3.8e-21  Score=166.63  Aligned_cols=124  Identities=35%  Similarity=0.588  Sum_probs=107.6

Q ss_pred             CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      .|.|+|+|+|++|++|+..+..|++||||+++++   .+..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++.
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~   82 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDV   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSS
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe---eeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecC
Confidence            5889999999999999999999999999999987   5677888876 689999999999999864 4579999999999


Q ss_pred             CCCCCceEEEEEEccccC-CCceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214          338 IQSSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~  392 (573)
                      .++|++||++.|+|.++. .+.....|+.+.+      +++.+|+|++++.|.|.+
T Consensus        83 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~------~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECC
T ss_pred             CCCCCEEEEEEEEhHHhcccCCcCcEEEEecC------CCccCEEEEEEEEEEeCC
Confidence            999999999999999874 3455678888853      456789999999999843

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.5e-21  Score=163.88  Aligned_cols=120  Identities=23%  Similarity=0.451  Sum_probs=107.5

Q ss_pred             eeEEEEEEEEeecCCCC---CCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPAS---DLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~  522 (573)
                      ++.|+|+|++|+||+..   +..|.+||||++.+++ ...+++|++++++.||.|||+|.|.+.++....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            57899999999999974   3457899999999974 3467899999999999999999999988777899999999998


Q ss_pred             CCCceeEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEEEe
Q 008214          523 FGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP  566 (573)
Q Consensus       523 ~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~~p  566 (573)
                      .++++||++.++|+++..+...+.||+|.+...|.|++++++.|
T Consensus        82 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred             CCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEe
Confidence            77789999999999998888889999999998999999999876

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.8e-21  Score=162.37  Aligned_cols=121  Identities=26%  Similarity=0.518  Sum_probs=106.5

Q ss_pred             ceEEEEEEEEeeeccCC---CCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214          261 VGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~  337 (573)
                      .++|+|+|++|+||+..   |..|.+||||++++++...++++|++++++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999864   446889999999997655678999999999999999999999988777899999999986


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      . +|++||++.++|.++..+.....|++|.        ....|+|++++++.|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~--------~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN--------QVTEMVLEMSLEVAS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEET--------TTEEEEEEEEEECCC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEcc--------CCCeEEEEEEEEEEe
Confidence            5 6899999999999999998999999993        346799999998865

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.2e-20  Score=156.57  Aligned_cols=115  Identities=32%  Similarity=0.586  Sum_probs=100.6

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~  525 (573)
                      ..|.|+|+|++|++|+..+..|.+||||++++++  .+++|+++++|.||.|||.|+|.+.++ .+.|.|+|||++..++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~   80 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKP   80 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC--eEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcC
Confidence            4599999999999999999999999999999976  788999999999999999999999865 5789999999988766


Q ss_pred             -ceeEEEEEEcceeeecCeEeEEEEcCC-----CCCeEEEEEEEEE
Q 008214          526 -DYMGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKWM  565 (573)
Q Consensus       526 -d~lG~~~i~l~~l~~~~~~~~~~~L~~-----~~~G~i~l~l~~~  565 (573)
                       ++||++.|+|+++..+.  .+||.|..     ..+|+|++++++.
T Consensus        81 d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          81 PDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             cceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence             69999999999986543  57888743     3479999998875

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.5e-19  Score=156.35  Aligned_cols=120  Identities=29%  Similarity=0.518  Sum_probs=102.8

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC
Q 008214          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (573)
Q Consensus       446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~  524 (573)
                      ..|.|.|+|++|++|+..+..|.+||||++++++  ..++|++++ ++.||.|||+|+|.+.+. ...|+|+|||++..+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~--~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGT   84 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCT
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee--eeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCC
Confidence            4699999999999999999999999999999976  567788876 589999999999999864 457999999999886


Q ss_pred             C-ceeEEEEEEcceeeecCe-EeEEEEcC--CCCCeEEEEEEEEEecC
Q 008214          525 K-DYMGRCILTLTRVILEGE-YTDCFELD--GTKSGKLKLHLKWMPQP  568 (573)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~~-~~~~~~L~--~~~~G~i~l~l~~~p~~  568 (573)
                      + ++||++.|+|.++..... ..+|+.+.  +...|+|++++.|.|..
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCC
Confidence            6 599999999999876544 47899984  34579999999999853

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.6e-19  Score=153.94  Aligned_cols=109  Identities=35%  Similarity=0.568  Sum_probs=92.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|+||+.++..|.+||||++++..   ...+++|+++++|.||.|||.|.|.+... ....|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            378999999999999999999999999999832   34578999999999999999999998754 34589999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCe
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG  556 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G  556 (573)
                      .++ ++||.+.|+|+++..+ ..++||+|.+.+.|
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  127 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  127 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             CCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence            876 5999999999998544 46899999775544

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.78  E-value=1.4e-18  Score=149.79  Aligned_cols=118  Identities=19%  Similarity=0.405  Sum_probs=101.3

Q ss_pred             ceeeEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEE
Q 008214          445 IIRGVLSVTVILAENLPASD-----------LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDML  513 (573)
Q Consensus       445 ~~~~~L~V~v~~a~~L~~~~-----------~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L  513 (573)
                      ..+|.|.|+|.+|++|++.+           ..+.+||||++++++ ....+|++++++.||.|||.|.|.+.+  ...|
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~-~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l   79 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWHDEFVTDVCN--GRKI   79 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCC-CcCcEeeEEcCCCCccCccEEEEEEec--CCce
Confidence            46899999999999998743           456789999999975 355689999999999999999999975  4689


Q ss_pred             EEEEEeCCCCCC-ceeEEEEEEcceeeecC--eEeEEEEcCCCCCeEEEEEEEEEec
Q 008214          514 IAEVWDHDTFGK-DYMGRCILTLTRVILEG--EYTDCFELDGTKSGKLKLHLKWMPQ  567 (573)
Q Consensus       514 ~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~--~~~~~~~L~~~~~G~i~l~l~~~p~  567 (573)
                      .|+|||++..++ ++||.+.|+|+++..+.  ..+.||+|++  .|+|++.++++|.
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~~  134 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEeC
Confidence            999999998876 59999999999997664  4578999985  6999999999875

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.2e-18  Score=151.80  Aligned_cols=107  Identities=30%  Similarity=0.477  Sum_probs=93.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~  523 (573)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ...+++|+++++|.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~  112 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCC
Confidence            468999999999999999889999999999842 34678999999999999999999988532  457899999999987


Q ss_pred             CC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214          524 GK-DYMGRCILTLTRVILEGEYTDCFELDGT  553 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~  553 (573)
                      ++ ++||++.|+|.++..+....+||+|+.+
T Consensus       113 ~~~~~iG~~~i~L~~~~~~~~~~~W~~L~sa  143 (143)
T d1rsya_         113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  143 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCCcEEEEEEEEchhccCCCCCccEEeCCCC
Confidence            76 5999999999999877778899999763

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=8.8e-19  Score=152.78  Aligned_cols=111  Identities=31%  Similarity=0.479  Sum_probs=99.8

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEe
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d  334 (573)
                      +....+.|+|+|++|+||+.++..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d  108 (143)
T d1rsya_          29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence            3456789999999999999999889999999999987667789999999999999999999987543  46689999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      ++..+++++||++.++|.++..+.....|++|.
T Consensus       109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_         109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             cCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            999989999999999999998888889999985

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.78  E-value=1.3e-18  Score=149.96  Aligned_cols=116  Identities=20%  Similarity=0.337  Sum_probs=98.9

Q ss_pred             ceEEEEEEEEeeeccCCC-----------CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEE
Q 008214          261 VGTLEVKLVQAKGLTNKD-----------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLV  329 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~  329 (573)
                      .|.|+|+|++|++|++.+           ..+.+||||+++++  +....+|++++++.||.|||+|.|.+.+  .+.|.
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~--~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~   80 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIE   80 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC--CCcCcEeeEEcCCCCccCccEEEEEEec--CCceE
Confidence            599999999999998743           34678999999996  2245689999999999999999999975  36899


Q ss_pred             EEEEeCCCCCCCCceEEEEEEccccCCC--ceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          330 VRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       330 i~v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      |+|||++.+++|++||.+.++|+++..+  ...+.|++|.          +.|++++.+.+.|
T Consensus        81 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------p~G~v~l~v~~~~  133 (136)
T d1gmia_          81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             EEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC----------CCcEEEEEEEEEe
Confidence            9999999999999999999999998544  4577899983          4599999999876

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.4e-18  Score=146.74  Aligned_cols=124  Identities=23%  Similarity=0.322  Sum_probs=98.6

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~  340 (573)
                      .++|.|+|++|+++++++..+.+||||++.++   ++.++|++++++.||.|||.|.|.+.+  .+.|.|+|||++.+++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~   79 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS   79 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEEC---CeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence            38899999999999988888899999999997   678999999999999999999999874  4689999999999999


Q ss_pred             CCceEEEEEEccccC---CCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          341 SELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       341 d~~lG~~~i~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      |++||++.++|.++.   .+.....|+.+... .........|+|.+.+.+..
T Consensus        80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~-~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLG-GDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEE-ESSCTTSEEEEEEEEEESEE
T ss_pred             CceEEEEEEEHHHhhhhcCCceeeEEEEEecC-CCCCCceEEEEEEEEEeeEE
Confidence            999999999999873   33333344443211 11235567899998887653

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2e-18  Score=148.33  Aligned_cols=108  Identities=34%  Similarity=0.537  Sum_probs=94.3

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEEecCC-CcEEEEEEEeCCC
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG  337 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~-~~~l~i~v~d~~~  337 (573)
                      .+.|.|+|++|+||+.++..|.+||||++++.+.  +..+++|++++++.||+|||+|.|.+.... ...|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            5889999999999999999999999999999643  345789999999999999999999987543 4579999999999


Q ss_pred             CCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      .++|++||++.++|.++..+. .+.|++|...
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~  124 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  124 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred             CCCCcEeEEEEEeHHHcCCCC-CCeEEECCCC
Confidence            999999999999999987654 5789999653

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.4e-18  Score=147.25  Aligned_cols=107  Identities=30%  Similarity=0.439  Sum_probs=88.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~  523 (573)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ...+++|+++++|.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~   96 (130)
T d1dqva1          17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   96 (130)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCC
Confidence            478999999999999999999999999999853 34578999999999999999999998643  456799999999987


Q ss_pred             CC-ceeEEEEEEcceeeec--CeEeEEEEcCCC
Q 008214          524 GK-DYMGRCILTLTRVILE--GEYTDCFELDGT  553 (573)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~--~~~~~~~~L~~~  553 (573)
                      ++ ++||.+.|++......  .....||+|.+.
T Consensus        97 ~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          97 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            65 6999999986543332  234579999764

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.2e-18  Score=147.57  Aligned_cols=112  Identities=29%  Similarity=0.447  Sum_probs=94.4

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEe
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d  334 (573)
                      +.+..+.|.|+|++|+||+.++..|.+||||++++.+.+.++++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        13 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d   92 (130)
T d1dqva1          13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD   92 (130)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             EECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence            3467899999999999999999889999999999976666789999999999999999999998643  45679999999


Q ss_pred             CCCCCCCCceEEEEEEccc-cC-CCceeEEEEEeee
Q 008214          335 DEGIQSSELIGCAQVRLCE-LE-PGKVKDVWLKLVK  368 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~-l~-~~~~~~~w~~L~~  368 (573)
                      ++.+++|++||++.|++.. +. .......|++|.+
T Consensus        93 ~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          93 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             cCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            9999999999999998653 32 2234557999863

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.3e-17  Score=141.24  Aligned_cols=121  Identities=17%  Similarity=0.309  Sum_probs=94.2

Q ss_pred             eEEEEEEEEeeeccCC--CCCCCCCcEEEEEEec--CCCCeEEeeeeCC-CCCceeccEEEEEEecCCCcEEEEEEEeCC
Q 008214          262 GTLEVKLVQAKGLTNK--DLIGKSDPYAVLFVRP--LPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~--d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~-~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~  336 (573)
                      ..|+|+|++|++|+..  +..+.+||||++++.+  .+.++++|+++++ +.||.|||+|.|.+..+....|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999754  4567899999999963  2346788888754 579999999999988777788999999999


Q ss_pred             CCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (573)
Q Consensus       337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~  388 (573)
                      ..++|++||++.++|..+..|   ..|++|....   ...-..++|.+++.+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~---g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN---GDQHPSATLFVKISI  129 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTT---SCEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCC---cCCCCCCEEEEEEEE
Confidence            998999999999999999765   3588885432   123346677777765

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.8e-18  Score=150.67  Aligned_cols=107  Identities=28%  Similarity=0.496  Sum_probs=91.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc------------ceeEeecccCCCCCCeeeeEEEEEec---cCCCCE
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS------------ETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDM  512 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~------------~~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~  512 (573)
                      |.|.|+|++|+||+..+..|.+||||++++...            ..++||++++++.||.|||.|.|.+-   +.....
T Consensus        18 ~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   97 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCE
Confidence            679999999999999999999999999998321            12468999999999999999999743   234668


Q ss_pred             EEEEEEeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          513 LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       513 L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      |.|+|||++..++ ++||++.|+|.++.......+||+|.+..
T Consensus        98 L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            9999999998876 69999999999998777788999998753

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-17  Score=140.16  Aligned_cols=104  Identities=27%  Similarity=0.537  Sum_probs=83.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEc---CcceeEeecccCCCCCCeeeeEEEEE-ecc--CCCCEEEEEEEeC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDH  520 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~V~d~  520 (573)
                      .+.|.|+|++|+||+..+..+.+||||++++.   ....+++|++++++.||.|||+|.|. +..  .....|.|+|||.
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~   92 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   92 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEEC
Confidence            46899999999999999888999999999993   23457899999999999999999996 432  2345899999999


Q ss_pred             CCCC--C-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214          521 DTFG--K-DYMGRCILTLTRVILEGEYTDCFELD  551 (573)
Q Consensus       521 ~~~~--~-d~lG~~~i~l~~l~~~~~~~~~~~L~  551 (573)
                      +..+  + ++||++.|+|+++..++. .+||+|+
T Consensus        93 ~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          93 ARVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             -------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            8753  2 489999999999876654 6899985

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.6e-17  Score=139.54  Aligned_cols=116  Identities=25%  Similarity=0.372  Sum_probs=94.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  525 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-  525 (573)
                      .+.|.|+|++|++++..+..+.+||||++.+++  +.++|+++++|.||.|||.|+|.+.+  .+.|.|+|||++.+++ 
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d   80 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD   80 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC--eEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCC
Confidence            478999999999999988888999999999987  67899999999999999999999974  5689999999999876 


Q ss_pred             ceeEEEEEEcceeeec--C---eEeEEEEcCC-----CCCeEEEEEEEEEe
Q 008214          526 DYMGRCILTLTRVILE--G---EYTDCFELDG-----TKSGKLKLHLKWMP  566 (573)
Q Consensus       526 d~lG~~~i~l~~l~~~--~---~~~~~~~L~~-----~~~G~i~l~l~~~p  566 (573)
                      ++||++.++|.++...  +   ....|+.|.+     ...|+|.+.|....
T Consensus        81 ~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          81 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            5999999999998653  1   2244555532     23588888877654

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.9e-18  Score=148.59  Aligned_cols=109  Identities=23%  Similarity=0.452  Sum_probs=93.3

Q ss_pred             ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC-----------eEEeeeeCCCCCceeccEEEEEEec---CCCc
Q 008214          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK-----------TKKSKTINNDLNPIWNEHFEFIVED---ESTQ  326 (573)
Q Consensus       261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~-----------~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~  326 (573)
                      .|.|.|+|++|+||+.++..|.+||||++++.+....           +++|++++++.||.|||+|.|.+..   ....
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            5899999999999999999999999999999543222           3578889999999999999997432   2456


Q ss_pred             EEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214          327 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (573)
Q Consensus       327 ~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  369 (573)
                      .|.|+|||++.+++|++||++.++|.++..+.....|++|.+.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            8999999999999999999999999999877778899999753

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=8.9e-17  Score=138.91  Aligned_cols=92  Identities=28%  Similarity=0.386  Sum_probs=72.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+..+.+||||++++..   ...++||++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~   93 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE   93 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence            468999999999999999889999999999832   22467899999999999999999998633  3447999999999


Q ss_pred             CCCC-ceeEEEEEEccee
Q 008214          522 TFGK-DYMGRCILTLTRV  538 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (573)
                      ..++ ++||++.|++...
T Consensus        94 ~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          94 RGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             TTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCEEEEEEEcchhC
Confidence            8765 6999999999864

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=9.6e-17  Score=135.71  Aligned_cols=98  Identities=24%  Similarity=0.352  Sum_probs=84.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCce
Q 008214          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  527 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~  527 (573)
                      +.|.|+|.+|++|...+   ..||||++.+++  .+.+|.+++ +.||.|||.|.|.+.++ .+.|.|+|||++..++++
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~--~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~   74 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTM   74 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETT--EEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCC--EEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcc
Confidence            68999999999999864   579999999976  788898876 55999999999999876 578999999998877679


Q ss_pred             eEEEEEEcceeeecC--eEeEEEEcCC
Q 008214          528 MGRCILTLTRVILEG--EYTDCFELDG  552 (573)
Q Consensus       528 lG~~~i~l~~l~~~~--~~~~~~~L~~  552 (573)
                      ||++.|+|+++....  ...+||+|..
T Consensus        75 lG~~~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          75 VGTVWIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             eEEEEEEehhhccCCCCCCCeeEECCc
Confidence            999999999997543  3478999953

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.8e-16  Score=136.97  Aligned_cols=104  Identities=30%  Similarity=0.462  Sum_probs=84.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+..+.+||||++++..   ...++||++++++.||.|||.|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~   93 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD   93 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence            478999999999999988889999999999832   34568999999999999999999998633  4568999999998


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      ..++ ++||++.+++.++..  ...+||+|..
T Consensus        94 ~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~  123 (137)
T d2cm5a1          94 IGKSNDYIGGCQLGISAKGE--RLKHWYECLK  123 (137)
T ss_dssp             SSSCCEEEEEEEEETTCCHH--HHHHHHHHHH
T ss_pred             CCCCCCEEEEEEeCccccCc--chhhhhhHhh
Confidence            8766 599999999987532  2244555543

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.3e-16  Score=134.96  Aligned_cols=118  Identities=18%  Similarity=0.277  Sum_probs=92.4

Q ss_pred             eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (573)
Q Consensus       262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d  341 (573)
                      +.|.|+|++|++|..++   +.||||+++++   +++.+|++++ +.||+|||+|.|.+.++ .+.|.|+|||++.. +|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~---~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d   72 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ---NVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WD   72 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEET---TEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeC---CEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CC
Confidence            68999999999999865   67999999997   6778888876 55999999999999876 46899999999875 69


Q ss_pred             CceEEEEEEccccCCC--ceeEEEEEeeecccc------cCCCcceeEEEEEEEE
Q 008214          342 ELIGCAQVRLCELEPG--KVKDVWLKLVKDLDV------QRDTKYRGQVHLELLY  388 (573)
Q Consensus       342 ~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~------~~~~~~~G~i~l~l~~  388 (573)
                      ++||++.|+|+++..+  .....|+.|......      .......+.|.++++|
T Consensus        73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             cceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            9999999999998543  346689999653321      1122345577777776

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=3.6e-16  Score=133.62  Aligned_cols=115  Identities=22%  Similarity=0.326  Sum_probs=90.6

Q ss_pred             eEEEEEEEEeecCCCC--CCCCCCCcEEEEEEcC---cceeEeecccCCC-CCCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214          448 GVLSVTVILAENLPAS--DLMGKADPYVVLTMKK---SETRNKTRVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (573)
Q Consensus       448 ~~L~V~v~~a~~L~~~--~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~L~i~V~d~~  521 (573)
                      ..|+|+|++|++|+..  +..+.+||||++++.+   ...+++|++++++ .||.|||+|+|.+..+....|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999854  4567899999999953   3467899987665 69999999999998777788999999999


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEEE
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWM  565 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~~  565 (573)
                      ..++ ++||++.|+|+++..+   .+|++|.+.     ..+.|.++++++
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            8876 5999999999998543   468888543     245777777764

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.1e-16  Score=136.48  Aligned_cols=110  Identities=20%  Similarity=0.272  Sum_probs=91.0

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCC-CCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC---CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~-~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~---~~~~l~i~v  332 (573)
                      +....+.|.|+|++|+||+.++..+. +||||++++.+.+.+.++|++++++.||.|||+|.|.....   ....|+|+|
T Consensus        17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V   96 (138)
T d1ugka_          17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence            44567899999999999998887654 79999999987667789999999999999999999974322   245899999


Q ss_pred             EeCCCCCCCCceEEEEEEccccCCCc-eeEEEEEe
Q 008214          333 YDDEGIQSSELIGCAQVRLCELEPGK-VKDVWLKL  366 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L  366 (573)
                      ||++.+++|++||++.++|.++...+ ....|..+
T Consensus        97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            99999999999999999999985433 34455554

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.7e-16  Score=138.94  Aligned_cols=107  Identities=27%  Similarity=0.460  Sum_probs=88.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~  521 (573)
                      .+.|.|+|++|+||+..+..+.+||||++++...   ..+++|++++++.||+|||+|.|.+...  ....|.|+|||++
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~  103 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccC
Confidence            4789999999999999888899999999998532   2356899999999999999999998744  3558999999999


Q ss_pred             CCCC-ceeEEEEEEccee----------eec--CeEeEEEEcCCC
Q 008214          522 TFGK-DYMGRCILTLTRV----------ILE--GEYTDCFELDGT  553 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l----------~~~--~~~~~~~~L~~~  553 (573)
                      .+++ ++||++.|++...          ...  ....+|++|...
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            8876 6999999999763          211  345789999753

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.9e-16  Score=134.74  Aligned_cols=105  Identities=18%  Similarity=0.184  Sum_probs=88.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC--cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  522 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~  522 (573)
                      .+.|.|+|++|++|+.   .|.+||||++++..  ....++|++++++.||.|||.|.|.+...  ....|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          25 KAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            3689999999999964   46789999999953  23467899999999999999999998643  45689999999998


Q ss_pred             CCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214          523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  554 (573)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~  554 (573)
                      .++ ++||++.|+|.++.......+|+.|....
T Consensus       102 ~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             cccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            876 69999999999987666778999998753

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-16  Score=137.23  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=93.0

Q ss_pred             cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC-CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEe
Q 008214          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (573)
Q Consensus       258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d  334 (573)
                      ....+.|.|+|++|++|..   .|.+||||++++.+.. ...++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        22 ~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d   98 (138)
T d1wfma_          22 DCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT   98 (138)
T ss_dssp             ETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred             CCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEee
Confidence            3567899999999999953   4678999999997543 2357899999999999999999998643  45789999999


Q ss_pred             CCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      ++.++++++||++.|+|.++..+...+.|+.|.+
T Consensus        99 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          99 CDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             ecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            9999999999999999999987777899999964

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.7e-16  Score=132.18  Aligned_cols=106  Identities=27%  Similarity=0.424  Sum_probs=84.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCC-CCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEe-cc--CCCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMG-KADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVV-ED--GLHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~-~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v-~~--~~~~~L~i~V~d~~  521 (573)
                      ...|.|+|++|+||+..+..+ .+||||++++.. ...++||++++++.||.|||+|.|.. ..  .....|+|+|||++
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d  100 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence            468999999999999887665 479999999942 34578999999999999999999973 32  13458999999998


Q ss_pred             CCCC-ceeEEEEEEcceeeec-CeEeEEEEcCC
Q 008214          522 TFGK-DYMGRCILTLTRVILE-GEYTDCFELDG  552 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~-~~~~~~~~L~~  552 (573)
                      .+++ ++||.+.|+|+++... +....|..+..
T Consensus       101 ~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~  133 (138)
T d1ugka_         101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             CCCCCcEEEEEEEEcccccCCCCeEEEEeeccC
Confidence            8765 6999999999998543 44556666543

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-16  Score=132.94  Aligned_cols=109  Identities=24%  Similarity=0.429  Sum_probs=86.9

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEE-EecC--CCcEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVR  331 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~-v~~~--~~~~l~i~  331 (573)
                      +....+.|+|+|++|+||+.++..+.+||||++++.+..  ..+++|++++++.||.|||+|.|. +...  ....|.|+
T Consensus         9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~   88 (125)
T d2bwqa1           9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT   88 (125)
T ss_dssp             EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred             EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence            345678999999999999999888999999999996532  346899999999999999999996 4322  35579999


Q ss_pred             EEeCCCC--CCCCceEEEEEEccccCCCceeEEEEEe
Q 008214          332 IYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL  366 (573)
Q Consensus       332 v~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~w~~L  366 (573)
                      |||++..  .++++||++.++|+++.... ...|++|
T Consensus        89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L  124 (125)
T d2bwqa1          89 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  124 (125)
T ss_dssp             EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             EEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeC
Confidence            9999865  34569999999999987655 3579987

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=6.3e-16  Score=136.53  Aligned_cols=112  Identities=30%  Similarity=0.443  Sum_probs=93.4

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +.+..|.|.|+|++|+||+.++..+.+||||++++.+.+..  .++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v   99 (157)
T d1uowa_          20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (157)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence            44667999999999999999998899999999999754333  45799999999999999999998754  345899999


Q ss_pred             EeCCCCCCCCceEEEEEEcccc------------CCCceeEEEEEeee
Q 008214          333 YDDEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVK  368 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~~  368 (573)
                      ||++.++++++||++.|++...            .+......|+.|..
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             EECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            9999999999999999999753            23445678888854

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.5e-16  Score=133.37  Aligned_cols=98  Identities=24%  Similarity=0.305  Sum_probs=78.4

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +.+..|.|.|+|++|+||+.++..+.+||||++++.+.+..  +++|++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v   89 (138)
T d1w15a_          10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV   89 (138)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence            44567899999999999999998899999999999654332  46789999999999999999987543  345799999


Q ss_pred             EeCCCCCCCCceEEEEEEcccc
Q 008214          333 YDDEGIQSSELIGCAQVRLCEL  354 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l  354 (573)
                      ||++.++++++||++.+++...
T Consensus        90 ~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          90 LDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             EECCTTSCCEEEEEEEESTTCC
T ss_pred             EeCCCCCCCCEEEEEEEcchhC
Confidence            9999999999999999998764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.1e-15  Score=131.91  Aligned_cols=98  Identities=24%  Similarity=0.405  Sum_probs=85.0

Q ss_pred             ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (573)
Q Consensus       257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v  332 (573)
                      +.+..|.|+|+|++|+||+.++..+.+||||++++.+.  ...+++|++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v   89 (137)
T d2cm5a1          10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV   89 (137)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence            44678999999999999999888899999999999643  23467899999999999999999998643  356899999


Q ss_pred             EeCCCCCCCCceEEEEEEcccc
Q 008214          333 YDDEGIQSSELIGCAQVRLCEL  354 (573)
Q Consensus       333 ~d~~~~~~d~~lG~~~i~l~~l  354 (573)
                      ||++..+++++||++.+++..+
T Consensus        90 ~~~~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          90 WDYDIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             EECCSSSCCEEEEEEEEETTCC
T ss_pred             eeCCCCCCCCEEEEEEeCcccc
Confidence            9999999999999999999764

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=9.2e-17  Score=140.11  Aligned_cols=105  Identities=30%  Similarity=0.395  Sum_probs=84.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (573)
Q Consensus       447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~  521 (573)
                      .|.|.|+|++|+||+..+..+.+||||++++...   ..+++|+++++|.||.|||.|.|.+..  .....|.|+|||++
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~   98 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD   98 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence            4789999999999999888899999999998532   236789999999999999999998763  24567999999998


Q ss_pred             CCCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214          522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDG  552 (573)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~  552 (573)
                      ..++ ++||++.|++..+... ...+|+.|..
T Consensus        99 ~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~  129 (145)
T d1dqva2          99 CIGHNEVIGVCRVGPEAADPH-GREHWAEMLA  129 (145)
T ss_dssp             SSSCCEEEEECCCSSCTTCHH-HHHHHHTSSS
T ss_pred             CCCCCcEEEEEEECchHcCch-hhHHHHHHHh
Confidence            8876 5999999999876322 2345666543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=6e-15  Score=123.92  Aligned_cols=108  Identities=13%  Similarity=0.257  Sum_probs=85.0

Q ss_pred             EEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214          265 EVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (573)
Q Consensus       265 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~  342 (573)
                      .|.++.+..+  +...+.+||||++++.+.  ....++|+++++|+||+|||+|.|.+.+  .+.|.|.|||+|    |+
T Consensus         8 ~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d----d~   79 (123)
T d1bdya_           8 SFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA----ED   79 (123)
T ss_dssp             EEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----TE
T ss_pred             EEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----cc
Confidence            3334444443  444688999999999642  1234678899999999999999999975  468999999976    68


Q ss_pred             ceEEEEEEcccc-----CCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214          343 LIGCAQVRLCEL-----EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (573)
Q Consensus       343 ~lG~~~i~l~~l-----~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p  390 (573)
                      ++|.+.+++.++     ..+...+.|+.|.          ++|+|++++.|++
T Consensus        80 ~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~----------~~Gkl~l~v~~f~  122 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             ccCccEEehhheeeccccCCCcccEEEeCC----------CCEEEEEEEEEec
Confidence            999999999987     3466788999983          5699999999974

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=6.8e-15  Score=123.60  Aligned_cols=107  Identities=14%  Similarity=0.245  Sum_probs=84.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCce
Q 008214          451 SVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  527 (573)
Q Consensus       451 ~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~  527 (573)
                      .|.++.+..+  ....+.+||||++++++.   ...++|+++++|+||+|||+|+|.+.+  .+.|.|.|||++   +++
T Consensus         8 ~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d~~   80 (123)
T d1bdya_           8 SFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---EDP   80 (123)
T ss_dssp             EEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---TEE
T ss_pred             EEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---ccc
Confidence            3334444333  445788999999999542   234678899999999999999999985  468999999986   479


Q ss_pred             eEEEEEEcceeee-----cCeEeEEEEcCCCCCeEEEEEEEEEe
Q 008214          528 MGRCILTLTRVIL-----EGEYTDCFELDGTKSGKLKLHLKWMP  566 (573)
Q Consensus       528 lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~G~i~l~l~~~p  566 (573)
                      +|.+.+++.++..     +...+.|++|+  +.|+|+++++|-+
T Consensus        81 ~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          81 MSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             cCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence            9999999998864     34568999997  4799999999965

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=4.2e-16  Score=135.85  Aligned_cols=111  Identities=28%  Similarity=0.433  Sum_probs=90.8

Q ss_pred             cccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEE
Q 008214          256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVR  331 (573)
Q Consensus       256 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~  331 (573)
                      .+.+..|.|.|+|++|+||+..+..+.+||||++++.+.+..  +++|++++++.||.|||+|.|.+..  .....|.|.
T Consensus        14 ~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~   93 (145)
T d1dqva2          14 CYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA   93 (145)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCE
T ss_pred             EEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEE
Confidence            345678999999999999999888899999999999754332  5789999999999999999998753  245679999


Q ss_pred             EEeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214          332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (573)
Q Consensus       332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  367 (573)
                      |||++..+++++||++.|++..+... ...+|+.+.
T Consensus        94 v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~  128 (145)
T d1dqva2          94 VVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML  128 (145)
T ss_dssp             EEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred             EEecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence            99999999999999999999876322 234566654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.8e-12  Score=107.10  Aligned_cols=95  Identities=22%  Similarity=0.422  Sum_probs=72.2

Q ss_pred             EEEEEEEEeeeccCCCCCCCCCcEEEEEEecC---CCCeEEeee--eCCCCCceeccE-EEE-EEecCCCcEEEEEEEeC
Q 008214          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL---PEKTKKSKT--INNDLNPIWNEH-FEF-IVEDESTQHLVVRIYDD  335 (573)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~T~~--~~~~~nP~w~e~-f~f-~v~~~~~~~l~i~v~d~  335 (573)
                      +|+|+|++|++|+.+    +.||||++++.+.   ..++++|++  .+++.||.|||+ |.| .+..++...|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999854    4799999999531   223344544  478899999976 444 35555566899999997


Q ss_pred             CCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (573)
Q Consensus       336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  368 (573)
                      +    |++||++.+|++.+..|-   .+++|..
T Consensus        78 d----~~~lG~~~ipl~~l~~Gy---R~vpL~~  103 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSGY---HHLCLHS  103 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCEE---EEEEEEC
T ss_pred             C----CCEEEEEEEEcccCcCCc---eEEEccC
Confidence            5    789999999999998754   5667753

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-11  Score=102.91  Aligned_cols=106  Identities=21%  Similarity=0.350  Sum_probs=76.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEcC----cceeEeecc--cCCCCCCeeeeE-EEE-EeccCCCCEEEEEEEeC
Q 008214          449 VLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRV--VNDCLNPIWNQT-FDF-VVEDGLHDMLIAEVWDH  520 (573)
Q Consensus       449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~~kT~~--~~~t~nP~wne~-f~f-~v~~~~~~~L~i~V~d~  520 (573)
                      .|.|+|++|++|+..    ..||||++++.+    ...+++|++  ..++.||.|||. |.| .+..+....|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999864    479999999943    223344444  467899999976 444 34555566899999998


Q ss_pred             CCCCCceeEEEEEEcceeeecCeEeEEEEcCCCC-----CeEEEEEEEE
Q 008214          521 DTFGKDYMGRCILTLTRVILEGEYTDCFELDGTK-----SGKLKLHLKW  564 (573)
Q Consensus       521 ~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~~-----~G~i~l~l~~  564 (573)
                      +   +++||++.++++.+..+   .++.+|.+..     .+.|.+.++.
T Consensus        78 d---~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l~~~~L~v~i~~  120 (122)
T d2zkmx2          78 G---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEM  120 (122)
T ss_dssp             T---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred             C---CCEEEEEEEEcccCcCC---ceEEEccCCCcCCCCCceEEEEEEE
Confidence            6   58999999999998544   4567776553     3444444443