Citrus Sinensis ID: 008261

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
MAQPRKLFLALFAVVLVVTAVVTIIATRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATLYPELCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL
cccccEEHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccHHHHccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEEcccccEEEcccccccccccccccEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEccccccccccccEEEEccEEEEcccEEEcccEEEEcccEEEEEccccccccEEEEcccccccccEEEEEEccEEccccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHHccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccccccccccccccHHHHHHHccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccc
MAQPRKLFLALFAVVLVVTAVVTIIATrknnssntndEHIAAHAHAYaqpvirsscsatlypeLCFSALsaapaaavskvnspkdVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEhelqgypaaannksIAEQADELKILVSAAMtnqetcldgfsheRADKKIREELMEGQMHVFHMCSNALAMIKnmtdgdigkDIVDHYSkarrlddetkwpewlsagdrRLLQattvvpdvtvaadgsgnYLTVAAAVAaapegssrRYIIRIKageyrenvevpkkkinlmfigdgrsttiitgsrnvvdgsttfnsatvavvgdgflarditfqntagpskHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQncdiharrpnpnqrnmvtaqgrddpnqntgiviqkcrigaTSDLLAVKGSFetylgrpwkrysrtvvmqsdisdvinpagwyewsgnfaldtlfyaeyqntgagadtsnrvKWSTFKVITNAAEAQTYTAANfiagstwlgstgfpfslgl
MAQPRKLFLALFAVVLVVTAVVTIIatrknnssntNDEHIAAHAHAYAQPVIRSSCSATLYPELCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLIttrkstltkrektslhdclEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTnqetcldgfsHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKarrlddetkwpewlSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAvaaapegssrrYIIRIkageyrenvevpkkkinlmfigdgrsttiiTGSRNVVDGSTTFNSATVAVVGDGFLARDITFQntagpskhqAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVtaqgrddpnqnTGIVIQKCRIGATSDLLAVKGSfetylgrpwkrysRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTgagadtsnrvKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL
MAQPRKlflalfavvlvvtavvtiiaTRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATLYPELCFsalsaapaaavsKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQattvvpdvtvaadGSGNYLTvaaavaaaPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL
*****KLFLALFAVVLVVTAVVTIIATR**********HIAAHAHAYAQPVIRSSCSATLYPELCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGY*************DELKILVSAAMTNQETCLDGFS*******IREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHA**********************TGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPF****
****RKL*LALFAVVLVVTAVVTIIA***************************SSCSATLYPELCFSA*****************VIRLSLNLTITAVQHN********************TSLHDCLEMVDETLDELYKTEHE****************ADELKILVSAAMTNQETCLDGFSHER***************VFHMCSNALAMIKNMT*********************TKWPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL
MAQPRKLFLALFAVVLVVTAVVTIIATRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATLYPELCFSALSAA********NSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNT********VALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL
MAQPRKLFLALFAVVLVVTAVVTIIATRKN******************QPVIRSSCSATLYPELCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGD*******************KWPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFS***
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAQPRKLFLALFAVVLVVTAVVTIIATRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATLYPELCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query572 2.2.26 [Sep-21-2011]
P83948584 Pectinesterase 3 OS=Citru no no 0.940 0.921 0.694 0.0
O04886584 Pectinesterase 1 OS=Citru no no 0.940 0.921 0.690 0.0
Q43143583 Pectinesterase/pectineste N/A no 0.987 0.969 0.659 0.0
O49006592 Pectinesterase/pectineste yes no 0.905 0.875 0.689 0.0
Q42534587 Pectinesterase 2 OS=Arabi no no 0.944 0.919 0.657 0.0
P83218319 Pectinesterase OS=Daucus N/A no 0.557 1.0 0.768 1e-146
Q9FK05587 Probable pectinesterase/p no no 0.958 0.933 0.430 1e-129
Q1JPL7557 Pectinesterase/pectineste no no 0.909 0.933 0.451 1e-126
O04887510 Pectinesterase 2 OS=Citru no no 0.858 0.962 0.463 1e-125
Q9LXK7527 Probable pectinesterase/p no no 0.777 0.844 0.496 1e-124
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function desciption
 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/563 (69%), Positives = 463/563 (82%), Gaps = 25/563 (4%)

Query: 17  VVTAVVTIIA---TRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATLYPELCFSALSAAP 73
           VV AV+ I+A   +RKN+  N N+ H     HA    +++SSCS+T YP+LCFSA++A P
Sbjct: 40  VVAAVIGIVAGVNSRKNSGDNGNEPH-----HA----ILKSSCSSTRYPDLCFSAIAAVP 90

Query: 74  AAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDE 133
            A+  KV S KDVI +SLN+T TAV+HNYF I+KL+  +++ LTKREK +LHDCLE +DE
Sbjct: 91  EAS-KKVTSQKDVIEMSLNITTTAVEHNYFGIQKLL--KRTNLTKREKVALHDCLETIDE 147

Query: 134 TLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIRE 193
           TLDEL+K   +L+ YP   N KS+++ AD+LK L+SAAMTNQ TCLDGFSH+ A+K +R+
Sbjct: 148 TLDELHKAVEDLEEYP---NKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRD 204

Query: 194 ELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETK----WPEWLSAGD 249
            L +GQ+HV  MCSNALAMIKNMTD D+   ++   S  R+L +ET     WP WLS GD
Sbjct: 205 ALSDGQVHVEKMCSNALAMIKNMTDTDM---MIMRTSNNRKLIEETSTVDGWPAWLSTGD 261

Query: 250 RRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKK 309
           RRLLQ+++V P+V VAADGSGN+ TVAA+VAAAP+G ++RYIIRIKAG YRENVEV KK 
Sbjct: 262 RRLLQSSSVTPNVVVAADGSGNFKTVAASVAAAPQGGTKRYIIRIKAGVYRENVEVTKKH 321

Query: 310 INLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVA 369
            N+MFIGDGR+ TIITGSRNVVDGSTTF SATVAVVG+GFLARDITFQNTAGPSKHQAVA
Sbjct: 322 KNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVA 381

Query: 370 LRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARR 429
           LRVG+DLSAFY CDMLAYQDTLYVHS RQF+ +C+IAGTVDFIFGNAAAVLQNCDIHAR+
Sbjct: 382 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARK 441

Query: 430 PNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVM 489
           PN  Q+NMVTAQGR DPNQNTGIVIQK RIGATSDL  V+GSF TYLGRPWK YSRTV+M
Sbjct: 442 PNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIM 501

Query: 490 QSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTY 549
           QS I+DVI+PAGW+EW GNFAL+TLFY E+QN GAGA TS RVKW  F+VIT+A EAQ +
Sbjct: 502 QSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAF 561

Query: 550 TAANFIAGSTWLGSTGFPFSLGL 572
           T  +FIAGS+WLGSTGFPFSLGL
Sbjct: 562 TPGSFIAGSSWLGSTGFPFSLGL 584
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 Back     alignment and function description
>sp|Q42534|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 Back     alignment and function description
>sp|P83218|PME_DAUCA Pectinesterase OS=Daucus carota PE=1 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
24250746631 putative thermostable pectinesterase [Ci 1.0 0.906 0.994 0.0
377824751567 pectin methylesterase [Gossypium hirsutu 0.968 0.977 0.720 0.0
224142905573 predicted protein [Populus trichocarpa] 0.979 0.977 0.685 0.0
377824753582 pectin methylesterase [Gossypium hirsutu 0.968 0.951 0.699 0.0
225441977611 PREDICTED: pectinesterase 3-like [Vitis 0.973 0.911 0.695 0.0
224074109579 predicted protein [Populus trichocarpa] 0.966 0.955 0.680 0.0
57014097584 RecName: Full=Pectinesterase 3; Short=PE 0.940 0.921 0.694 0.0
401834530582 pectin methylesterase [Theobroma cacao] 0.970 0.953 0.694 0.0
6689892576 pectin methyl esterase [Solanum tuberosu 0.984 0.977 0.669 0.0
354718772521 PME2 [Gossypium barbadense] 0.882 0.969 0.725 0.0
>gi|24250746|gb|AAK84485.1| putative thermostable pectinesterase [Citrus sinensis] gi|24250751|gb|AAK84486.1| putative thermostable pectinesterase [Citrus sinensis] Back     alignment and taxonomy information
 Score = 1191 bits (3080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/572 (99%), Positives = 571/572 (99%)

Query: 1   MAQPRKLFLALFAVVLVVTAVVTIIATRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATL 60
           MAQPRKLFLALFAVVLVVTAVVTIIATRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATL
Sbjct: 60  MAQPRKLFLALFAVVLVVTAVVTIIATRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATL 119

Query: 61  YPELCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKRE 120
           YPELCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKRE
Sbjct: 120 YPELCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKRE 179

Query: 121 KTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLD 180
           KTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLD
Sbjct: 180 KTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLD 239

Query: 181 GFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETK 240
           GFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETK
Sbjct: 240 GFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETK 299

Query: 241 WPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYR 300
           WPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYR
Sbjct: 300 WPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYR 359

Query: 301 ENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTA 360
           ENVEVPKKKINLMFIGDGR+TTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTA
Sbjct: 360 ENVEVPKKKINLMFIGDGRTTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTA 419

Query: 361 GPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVL 420
           GPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAV 
Sbjct: 420 GPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVF 479

Query: 421 QNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPW 480
           QNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPW
Sbjct: 480 QNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPW 539

Query: 481 KRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVI 540
           KRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVI
Sbjct: 540 KRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVI 599

Query: 541 TNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 572
           T+AAEAQTYTAANFIAGSTWLGSTGFPFSLGL
Sbjct: 600 TSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 631

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|377824751|gb|AFB77928.1| pectin methylesterase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224142905|ref|XP_002324773.1| predicted protein [Populus trichocarpa] gi|222866207|gb|EEF03338.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|377824753|gb|AFB77929.1| pectin methylesterase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|225441977|ref|XP_002265171.1| PREDICTED: pectinesterase 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224074109|ref|XP_002304257.1| predicted protein [Populus trichocarpa] gi|222841689|gb|EEE79236.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|57014097|sp|P83948.1|PME3_CITSI RecName: Full=Pectinesterase 3; Short=PE 3; AltName: Full=Pectin methylesterase 3; Flags: Precursor Back     alignment and taxonomy information
>gi|401834530|gb|AFQ23194.1| pectin methylesterase [Theobroma cacao] Back     alignment and taxonomy information
>gi|6689892|gb|AAF23892.1|AF152172_1 pectin methyl esterase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|354718772|gb|AER38243.1| PME2 [Gossypium barbadense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.935 0.911 0.627 1.4e-181
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.931 0.900 0.554 7.9e-149
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.886 0.863 0.430 2.9e-110
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.783 0.850 0.478 7e-109
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.751 0.771 0.482 1.5e-106
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.879 0.841 0.418 1.5e-106
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.569 0.637 0.578 3.5e-105
TAIR|locus:2133219518 AT4G02320 [Arabidopsis thalian 0.818 0.903 0.43 3.2e-104
TAIR|locus:2137839532 AT4G02300 [Arabidopsis thalian 0.826 0.889 0.448 8.8e-102
TAIR|locus:2125949525 PME44 "pectin methylesterase 4 0.786 0.857 0.444 4.4e-100
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
 Identities = 350/558 (62%), Positives = 411/558 (73%)

Query:    27 TRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDV 86
             T  N + N     +++ +HA    +++S CS+TLYPELCF            ++ S K+V
Sbjct:    41 TTTNQNKNQKITTLSSTSHA----ILKSVCSSTLYPELCFSAVAATGGK---ELTSQKEV 93

Query:    87 IRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQ 146
             I  SLNLT  AV+HNYFA+KKLI  RK  LT RE T+LHDCLE +DETLDEL+    +L 
Sbjct:    94 IEASLNLTTKAVKHNYFAVKKLIAKRKG-LTPREVTALHDCLETIDETLDELHVAVEDLH 152

Query:   147 GYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMC 206
              YP     KS+ + AD+LK L+S+A+TNQ TCLDGFS++ AD+K+R+ L++GQ+HV HMC
Sbjct:   153 QYP---KQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMC 209

Query:   207 SNALAMIKNMTDGDIGK-DIVDHYS-----KARRLDDETK------WPEWLSAGDRRLLQ 254
             SNALAMIKNMT+ DI   ++ D  S       R+L + T       WP+WLS GDRRLLQ
Sbjct:   210 SNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQ 269

Query:   255 XXXXXXXXXXXXXGSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMF 314
                          GSG++ T        PE S++R++I IKAG YRENVEV KKK N+MF
Sbjct:   270 GSTIKADATVADDGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYRENVEVTKKKTNIMF 329

Query:   315 IGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGS 374
             +GDGR  TIITGSRNVVDGSTTF+SATVA VG+ FLARDITFQNTAGPSKHQAVALRVGS
Sbjct:   330 LGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGS 389

Query:   375 DLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQ 434
             D SAFY+CDM AYQDTLYVHS RQF+  C I GTVDFIFGNAAAVLQ+CDI+ARRPN  Q
Sbjct:   390 DFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQ 449

Query:   435 RNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDIS 494
             +NMVTAQGR DPNQNTGIVIQ CRIG TSDLLAVKG+F TYLGRPWK YSRTV+MQSDIS
Sbjct:   450 KNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDIS 509

Query:   495 DVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANF 554
             DVI P GW+EWSG+FALDTL Y EY N G GA T+NRVKW  +KVIT+  EAQ +TA  F
Sbjct:   510 DVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFTAGQF 569

Query:   555 IAGSTWLGSTGFPFSLGL 572
             I G  WL STGFPFSL L
Sbjct:   570 IGGGGWLASTGFPFSLSL 587
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005576 "extracellular region" evidence=ISS
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133219 AT4G02320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137839 AT4G02300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125949 PME44 "pectin methylesterase 44" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43143PMEU1_SOLLC3, ., 1, ., 1, ., 1, 10.65900.98770.9691N/Ano
O49006PME3_ARATH3, ., 1, ., 1, ., 1, 10.68990.90550.875yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.991
3rd Layer3.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 0.0
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-180
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-175
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-170
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-170
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-168
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-168
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-166
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-161
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-155
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-155
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-154
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-154
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-138
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-136
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-128
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-128
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-128
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-124
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-102
PLN02432293 PLN02432, PLN02432, putative pectinesterase 5e-70
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 5e-68
PLN02773317 PLN02773, PLN02773, pectinesterase 8e-66
PLN02497331 PLN02497, PLN02497, probable pectinesterase 2e-61
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-61
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 4e-61
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-59
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 6e-55
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-51
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-43
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 2e-38
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 2e-31
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 3e-30
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 8e-24
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 1e-18
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  789 bits (2038), Expect = 0.0
 Identities = 379/581 (65%), Positives = 444/581 (76%), Gaps = 24/581 (4%)

Query: 5   RKLFLALFAV-VLVVTAVVTIIATRKNNSSNTNDEHIAAHAHAYAQPVIRSSCSATLYPE 63
           +KL L+  A+ +L+V AVV I A   N + N     +++ +HA    V++S CS+TLYPE
Sbjct: 18  KKLILSSAAIALLLVAAVVGIAAGTTNQNKNRKITTLSSTSHA----VLKSVCSSTLYPE 73

Query: 64  LCFSALSAAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTS 123
           LCFSA++A       ++ S K+VI  SLNLT  AV+HNYFA+KKLI  RK  LT RE T+
Sbjct: 74  LCFSAVAATGGK---ELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKG-LTPREVTA 129

Query: 124 LHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFS 183
           LHDCLE +DETLDEL+    +L  YP     KS+ + AD+LK L+S+A+TNQ TCLDGFS
Sbjct: 130 LHDCLETIDETLDELHVAVEDLHQYP---KQKSLRKHADDLKTLISSAITNQGTCLDGFS 186

Query: 184 HERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIG------KDIVDHYSKARRLDD 237
           ++ AD+K+R+ L++GQ+HV HMCSNALAMIKNMT+ DI       K      +  R+L +
Sbjct: 187 YDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSSFTNNNNRKLKE 246

Query: 238 ETK------WPEWLSAGDRRLLQATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYI 291
            T       WP WLS GDRRLLQ +T+  D TVAADGSG++ TVAAAVAAAPE S++R++
Sbjct: 247 VTGDLDSEGWPTWLSVGDRRLLQGSTIKADATVAADGSGDFTTVAAAVAAAPEKSNKRFV 306

Query: 292 IRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLA 351
           I IKAG YRENVEV KKK N+MF+GDGR  TIITGSRNVVDGSTTF+SATVA VG+ FLA
Sbjct: 307 IHIKAGVYRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366

Query: 352 RDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDF 411
           RDITFQNTAGPSKHQAVALRVGSD SAFY+CDM AYQDTLYVHS RQF+  C I GTVDF
Sbjct: 367 RDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDF 426

Query: 412 IFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGS 471
           IFGNAAAVLQ+CDI+ARRPN  Q+NMVTAQGR DPNQNTGIVIQ CRIG TSDLLAVKG+
Sbjct: 427 IFGNAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGT 486

Query: 472 FETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNR 531
           F TYLGRPWK YSRTV+MQSDISDVI P GW EWSG+FALDTL Y EY N G GA T+NR
Sbjct: 487 FPTYLGRPWKEYSRTVIMQSDISDVIRPEGWSEWSGSFALDTLTYREYLNRGGGAGTANR 546

Query: 532 VKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 572
           VKW  FKVIT+  EAQ +TA  FI G  WL STGFPFSL L
Sbjct: 547 VKWKGFKVITSDTEAQKFTAGQFIGGGGWLASTGFPFSLSL 587

Length = 587
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 572
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.95
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.94
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.92
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.44
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.92
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.76
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.7
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.19
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.08
KOG1777 625 consensus Putative Zn-finger protein [General func 97.29
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.05
PLN02793443 Probable polygalacturonase 96.94
PLN03003456 Probable polygalacturonase At3g15720 96.87
PLN02218431 polygalacturonase ADPG 96.87
PLN03010409 polygalacturonase 96.51
PLN02155394 polygalacturonase 96.24
PRK10531422 acyl-CoA thioesterase; Provisional 96.23
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.09
PLN02682369 pectinesterase family protein 96.0
PLN02480343 Probable pectinesterase 95.97
PLN02671359 pectinesterase 95.81
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.46
PLN02773317 pectinesterase 95.39
PLN02176340 putative pectinesterase 95.27
smart00656190 Amb_all Amb_all domain. 95.07
PLN02634359 probable pectinesterase 94.81
PLN02304379 probable pectinesterase 94.77
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.71
PLN02665366 pectinesterase family protein 94.59
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.59
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.37
PLN02432293 putative pectinesterase 94.37
PLN02197588 pectinesterase 94.3
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 94.09
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.06
PLN02916502 pectinesterase family protein 93.89
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.87
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 93.73
PLN02497331 probable pectinesterase 93.68
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.59
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.56
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.5
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.42
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.39
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 93.24
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 93.23
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.18
PLN02314586 pectinesterase 92.74
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.7
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 92.66
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.32
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 92.31
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.29
PLN02468565 putative pectinesterase/pectinesterase inhibitor 92.13
PLN02484587 probable pectinesterase/pectinesterase inhibitor 91.96
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 91.92
PLN02301548 pectinesterase/pectinesterase inhibitor 91.3
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 91.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.74
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 88.29
PLN02188404 polygalacturonase/glycoside hydrolase family prote 87.8
KOG173397 consensus Mitochondrial import inner membrane tran 85.24
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 84.5
PLN02218431 polygalacturonase ADPG 82.89
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 82.81
smart00722146 CASH Domain present in carbohydrate binding protei 81.03
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 80.67
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2.8e-138  Score=1141.26  Aligned_cols=549  Identities=44%  Similarity=0.767  Sum_probs=489.6

Q ss_pred             CCceeehhHHHHHHHHHHhheeeeeeeccCCCCCC--cc-cccccccccchHHHhcCCCCCChhchHHHhhcCCCccccC
Q 008261            3 QPRKLFLALFAVVLVVTAVVTIIATRKNNSSNTND--EH-IAAHAHAYAQPVIRSSCSATLYPELCFSALSAAPAAAVSK   79 (572)
Q Consensus         3 ~~~~~~i~~~s~il~v~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~I~~~C~~T~yp~lC~~sL~~~~~s~~~~   79 (572)
                      +.||++|+++|++|||+++|++++. +..+.+++.  +. ....+   +..+|+++|++|+||++|+++|+++|.+   .
T Consensus        28 ~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~Iks~C~~T~YP~lC~sSLs~~p~s---~  100 (587)
T PLN02484         28 RRRKTKLVLFSIVLLIVSAVAAAIF-AGVRAKASGQTSPKSLHRK---PTQAISKTCSKTRFPNLCVDSLLDFPGS---L  100 (587)
T ss_pred             ccceEhHHHHHHHHHHHHHHhheEE-EeccccCCCCCCCCccccC---hhHHHHHhccCCCChHHHHHHHhhcccc---c
Confidence            5679999999999999999988853 332221111  11 11111   2369999999999999999999999876   5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcchhhh
Q 008261           80 VNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAE  159 (572)
Q Consensus        80 ~~dp~~La~ial~~a~~~a~~a~~~i~~l~~~~~~~~d~~~~~aL~dC~e~y~~Avd~L~~a~~~l~~~d~~~~~~~~~~  159 (572)
                      ..+|++|++++|++++.++.++......+.. .  .+++++++||+||+|+|++++|+|++|+++|....      . .+
T Consensus       101 ~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~-~--~~~~r~k~AL~DClELlddAid~L~~Sl~~l~~~~------~-~~  170 (587)
T PLN02484        101 TASESDLIHISFNMTLQHFSKALYLSSTISY-V--QMPPRVRSAYDSCLELLDDSVDALSRALSSVVPSS------G-GG  170 (587)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c-cc
Confidence            7799999999999999999998766554433 3  57899999999999999999999999999997532      1 35


Q ss_pred             cHhHHHHHHHHHhhchHHHHhhhcCCccChhhHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCcccccccccCccCCCC-
Q 008261          160 QADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDE-  238 (572)
Q Consensus       160 ~~~d~~twLSAAlt~~~TC~DgF~e~~~~~~~~~~l~~~~~~~~~L~SnALaIv~~l~~~~~~~~~~~~~~~~r~l~~~-  238 (572)
                      .++|++|||||||||++||+|||++.. +++++++|.+.+.++.||+||||||++.+...++. +++.  ..+|+|+.+ 
T Consensus       171 ~~~DvkTWLSAALTnq~TClDGF~e~~-~~~vk~~m~~~l~~l~~LtSNALAIi~~~~~~~~~-~~~~--~~~r~l~~~~  246 (587)
T PLN02484        171 SPQDVVTWLSAALTNHDTCTEGFDGVN-GGEVKDQMTGALKDLSELVSNCLAIFSASNGGDFS-GVPI--QNRRRLLTEE  246 (587)
T ss_pred             chHHHHhHHHHHhccHhhHHHHhhccc-ccchHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cccc--cccccccccc
Confidence            689999999999999999999998642 24689999999999999999999999999864322 2322  135666543 


Q ss_pred             --CCccccccccccccccccC--CCCeEEEcCCCCCCcccHHHHHHhCcCCCCceEEEEEecceeee-eEEecccCCCeE
Q 008261          239 --TKWPEWLSAGDRRLLQATT--VVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRE-NVEVPKKKINLM  313 (572)
Q Consensus       239 --~~~p~w~~~~~r~l~~~~~--~~~~i~V~~dg~g~f~TIq~Al~aa~~~~~~~~~I~I~~G~Y~E-~v~I~~~~~~It  313 (572)
                        ++||+|++..|||||+.+.  ++++++|++||+|+|+|||+||+++|++++.|++|+|+||+|+| +|.|++.|++|+
T Consensus       247 ~~~~~P~W~~~~dr~ll~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~k~ni~  326 (587)
T PLN02484        247 EDISFPRWLGRRERELLGMPVSAIQADIIVSKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRKKTNLM  326 (587)
T ss_pred             ccccCCCCcChhhHHHhhcccccCCceEEECCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCCCceEE
Confidence              4899999999999999854  88999999999999999999999999999999999999999999 599999999999


Q ss_pred             EeecCCCceEEeccccccCCCcccccceEEEecCcEEEEeeEeeccCCCCCCceeEEEecccceEEEEeeEeecccceec
Q 008261          314 FIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYV  393 (572)
Q Consensus       314 l~G~g~~~t~I~~~~~~~~g~~t~~sat~~v~~~~~~~~~lti~N~~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~  393 (572)
                      |+|+|.++|+|+++++..++.+|+++|||.|.+++|+++||||+|++|+.++|||||++.+|+++||||+|.|||||||+
T Consensus       327 l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~  406 (587)
T PLN02484        327 FIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYV  406 (587)
T ss_pred             EEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence            99999999999999988788899999999999999999999999999998999999999999999999999999999999


Q ss_pred             cCcceEeeecEEecccceeecCCcceeeeeEEEeecCCCCCceEEEecCCCCCCCCceEEEECcEEeecCCcccccCcce
Q 008261          394 HSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFE  473 (572)
Q Consensus       394 ~~~r~~~~~c~I~G~vDfIfG~~~~~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~  473 (572)
                      +.+||||++|+|+|+||||||+|+++||+|+|+++++.+++.++||||+|+++++.+||||+||+|++++++.+.+...+
T Consensus       407 ~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~  486 (587)
T PLN02484        407 HSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFP  486 (587)
T ss_pred             CCCcEEEEecEEEeccceecccceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccc
Confidence            99999999999999999999999999999999999887788999999999999999999999999999988765555567


Q ss_pred             eEecccCCCcCeEEEEeCCCCCccCCCCCcCCCCCCCCCccEEEEeccccCCCCCCCccccCCccccCCHHHHhccchhc
Q 008261          474 TYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAAN  553 (572)
Q Consensus       474 ~yLGRpW~~~s~vv~~~s~~~~~i~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~~~~~~ea~~~t~~~  553 (572)
                      +||||||++|+|||||+|+|+++|+|+||.+|++.+++++++|+||+|+|||+++++||+|++++++++++||.+|++.+
T Consensus       487 ~yLGRPW~~ysrvV~~~s~i~~~I~p~GW~~W~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~~~~~~ea~~ft~~~  566 (587)
T PLN02484        487 TYLGRPWKLYSRTVYMMSYMGDHIHPRGWLEWNTTFALDTLYYGEYMNYGPGSGVGQRVKWPGYRVITSTVEASKFTVAQ  566 (587)
T ss_pred             eeccCCCCCCceEEEEecccCCeEcccccCCCCCCCCCCceEEEEeccccCCCCcCCCccCccccccCCHHHHHhhhHHh
Confidence            99999999999999999999999999999999998888999999999999999999999999988887899999999999


Q ss_pred             cccCCCCCCCCCCCCCCCC
Q 008261          554 FIAGSTWLGSTGFPFSLGL  572 (572)
Q Consensus       554 ~~~g~~W~p~~~~~~~~~~  572 (572)
                      ||+|+.|+|.++|||.+||
T Consensus       567 fi~g~~W~~~~~vp~~~gl  585 (587)
T PLN02484        567 FIYGSSWLPSTGVSFLAGL  585 (587)
T ss_pred             hcCCCCcCCCCCCCcccCC
Confidence            9999999999999999997

>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-138
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-103
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-18
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-18
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 9e-18
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 8e-12
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  488 bits (1255), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/305 (75%), Positives = 256/305 (83%)
Query: 268 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGS 327
           GSG+Y T        PE S  RY+IRIKAG YRENV+VPKKK N+MF+GDGR++TIIT S
Sbjct: 15  GSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITAS 74
Query: 328 RNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAY 387
           +NV DGSTTFNSATVA VG GFLARDITFQNTAG +KHQAVALRVGSDLSAFYRCD+LAY
Sbjct: 75  KNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAY 134
Query: 388 QDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPN 447
           QD+LYVHS RQF+ +C IAGTVDFIFGNAA VLQ+CDIHARRP   Q+NMVTAQGR DPN
Sbjct: 135 QDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPN 194
Query: 448 QNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSG 507
           QNTGIVIQK RIGATSDL  V+ SF TYLGRPWK YSRTVVMQS I++VINPAGW+ W G
Sbjct: 195 QNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDG 254
Query: 508 NFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFP 567
           NFALDTL+Y EYQNTGAGA TS RV W  FKVIT++ EAQ +T  +FIAG +WL +T FP
Sbjct: 255 NFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFP 314
Query: 568 FSLGL 572
           FSLGL
Sbjct: 315 FSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 0.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 0.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-137
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-137
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-115
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 1e-33
1x91_A153 Invertase/pectin methylesterase inhibitor family p 2e-32
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 6e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  531 bits (1370), Expect = 0.0
 Identities = 244/319 (76%), Positives = 275/319 (86%)

Query: 254 QATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLM 313
           +++TV P+V VAADGSG+Y TV+ AVAAAPE S  RY+IRIKAG YRENV+VPKKK N+M
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 314 FIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVG 373
           F+GDGR++TIIT S+NV DGSTTFNSATVA VG GFLARDITFQNTAG +KHQAVALRVG
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 374 SDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPN 433
           SDLSAFYRCD+LAYQD+LYVHS RQF+ +C IAGTVDFIFGNAA VLQ+CDIHARRP   
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 434 QRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDI 493
           Q+NMVTAQGR DPNQNTGIVIQK RIGATSDL  V+ SF TYLGRPWK YSRTVVMQS I
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 494 SDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAAN 553
           ++VINPAGW+ W GNFALDTL+Y EYQNTGAGA TS RV W  FKVIT++ EAQ +T  +
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300

Query: 554 FIAGSTWLGSTGFPFSLGL 572
           FIAG +WL +T FPFSLGL
Sbjct: 301 FIAGGSWLKATTFPFSLGL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.97
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.64
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.46
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.72
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.13
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.0
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.97
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.54
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.5
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.49
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.48
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.44
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.38
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.37
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.36
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.21
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.17
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.16
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.11
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.01
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.93
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.92
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.64
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.61
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.41
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.33
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.33
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.86
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.75
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.74
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.74
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.7
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.66
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.06
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.02
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.76
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.53
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 89.5
2inu_A410 Insulin fructotransferase; right-handed parallel b 87.31
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 86.58
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 86.04
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 85.86
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 85.45
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 85.29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 84.71
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 84.71
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 81.96
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 81.35
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 81.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 80.94
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 80.17
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=9.2e-91  Score=719.38  Aligned_cols=316  Identities=77%  Similarity=1.214  Sum_probs=301.1

Q ss_pred             CCCCeEEEcCCCCCCcccHHHHHHhCcCCCCceEEEEEecceeeeeEEecccCCCeEEeecCCCceEEeccccccCCCcc
Q 008261          257 TVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGSTT  336 (572)
Q Consensus       257 ~~~~~i~V~~dg~g~f~TIq~Al~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~t~I~~~~~~~~g~~t  336 (572)
                      ..+++++|+++|+|+|+|||+||+++|++++.|++|+|+||+|+|+|.|++.|++|||+|++.++|+|+++.+..+|.+|
T Consensus         4 ~~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t   83 (319)
T 1gq8_A            4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             CccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccccCCCCc
Confidence            35789999999999999999999999999999999999999999999999888999999999999999999888888899


Q ss_pred             cccceEEEecCcEEEEeeEeeccCCCCCCceeEEEecccceEEEEeeEeecccceeccCcceEeeecEEecccceeecCC
Q 008261          337 FNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNA  416 (572)
Q Consensus       337 ~~sat~~v~~~~~~~~~lti~N~~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~  416 (572)
                      ++++||.|.+++|+++||||+|++++.++||+||++.+|++.|++|+|.|+|||||++++||||++|+|+|+||||||++
T Consensus        84 ~~satv~v~a~~f~~~nlt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~  163 (319)
T 1gq8_A           84 FNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNA  163 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESC
T ss_pred             cceEEEEEECCCEEEEEeEeEccCCCcCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEEeeeeEEecCC
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeEEEeecCCCCCceEEEecCCCCCCCCceEEEECcEEeecCCcccccCcceeEecccCCCcCeEEEEeCCCCCc
Q 008261          417 AAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDV  496 (572)
Q Consensus       417 ~~~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~~yLGRpW~~~s~vv~~~s~~~~~  496 (572)
                      +++||+|+|+++++..++.++||||+|+++++++||||+||+|++++++.+.+...++||||||++|+|||||+|+|+++
T Consensus       164 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~  243 (319)
T 1gq8_A          164 AVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV  243 (319)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTT
T ss_pred             cEEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceEEEEeccCCCc
Confidence            99999999999988777889999999999999999999999999998765543344799999999999999999999999


Q ss_pred             cCCCCCcCCCCCCCCCccEEEEeccccCCCCCCCccccCCccccCCHHHHhccchhccccCCCCCCCCCCCCCCCC
Q 008261          497 INPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL  572 (572)
Q Consensus       497 i~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~~~~~~ea~~~t~~~~~~g~~W~p~~~~~~~~~~  572 (572)
                      |+|+||.+|++.+++++++|+||+|+|||+++++||+|++++++++++||.+|++.+||+|++|+|.+++||..||
T Consensus       244 I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  319 (319)
T 1gq8_A          244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             BCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             ccccccCcCCCCCCCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCCCCccccCCC
Confidence            9999999999988889999999999999999999999999888877899999999999999999999999999997
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 572
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-163
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-98
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 7e-32
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 6e-27
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 1e-05
d2inca1 491 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase 0.001
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  466 bits (1200), Expect = e-163
 Identities = 244/319 (76%), Positives = 275/319 (86%)

Query: 254 QATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLM 313
           +++TV P+V VAADGSG+Y TV+ AVAAAPE S  RY+IRIKAG YRENV+VPKKK N+M
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 314 FIGDGRSTTIITGSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVG 373
           F+GDGR++TIIT S+NV DGSTTFNSATVA VG GFLARDITFQNTAG +KHQAVALRVG
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 374 SDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVLQNCDIHARRPNPN 433
           SDLSAFYRCD+LAYQD+LYVHS RQF+ +C IAGTVDFIFGNAA VLQ+CDIHARRP   
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 434 QRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDI 493
           Q+NMVTAQGR DPNQNTGIVIQK RIGATSDL  V+ SF TYLGRPWK YSRTVVMQS I
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 494 SDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAAN 553
           ++VINPAGW+ W GNFALDTL+Y EYQNTGAGA TS RV W  FKVIT++ EAQ +T  +
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300

Query: 554 FIAGSTWLGSTGFPFSLGL 572
           FIAG +WL +T FPFSLGL
Sbjct: 301 FIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Length = 491 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.08
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.79
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.17
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.39
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.05
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.64
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.4
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.24
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.91
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.85
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.76
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.72
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.62
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.52
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.89
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.12
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.12
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 92.57
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 86.83
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 85.96
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 84.1
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 80.45
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.3e-94  Score=742.36  Aligned_cols=318  Identities=77%  Similarity=1.209  Sum_probs=304.5

Q ss_pred             ccCCCCeEEEcCCCCCCcccHHHHHHhCcCCCCceEEEEEecceeeeeEEecccCCCeEEeecCCCceEEeccccccCCC
Q 008261          255 ATTVVPDVTVAADGSGNYLTVAAAVAAAPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFIGDGRSTTIITGSRNVVDGS  334 (572)
Q Consensus       255 ~~~~~~~i~V~~dg~g~f~TIq~Al~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~t~I~~~~~~~~g~  334 (572)
                      +...+++++|++||+|||+|||+||+++|.+++.|++|+|+||+|+|+|+|++.|++|||+|+|++.|+|+++.+..++.
T Consensus         2 ~~~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~   81 (319)
T d1gq8a_           2 SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGS   81 (319)
T ss_dssp             CCSSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTC
T ss_pred             CCcCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCC
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             cccccceEEEecCcEEEEeeEeeccCCCCCCceeEEEecccceEEEEeeEeecccceeccCcceEeeecEEecccceeec
Q 008261          335 TTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFG  414 (572)
Q Consensus       335 ~t~~sat~~v~~~~~~~~~lti~N~~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG  414 (572)
                      +|++++||.|.+++|+++||||+|++++.++|||||++.+|++.||+|+|+|||||||++.|||||++|+|+|+||||||
T Consensus        82 ~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG  161 (319)
T d1gq8a_          82 TTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFG  161 (319)
T ss_dssp             CTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             ccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEec
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeeeEEEeecCCCCCceEEEecCCCCCCCCceEEEECcEEeecCCcccccCcceeEecccCCCcCeEEEEeCCCC
Q 008261          415 NAAAVLQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDIS  494 (572)
Q Consensus       415 ~~~~~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~~yLGRpW~~~s~vv~~~s~~~  494 (572)
                      +++++||+|+|+++++..++.++||||+|+++.+++||||+||+|++++++.+.....++||||||++++||||++|+|+
T Consensus       162 ~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~  241 (319)
T d1gq8a_         162 NAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSIT  241 (319)
T ss_dssp             SCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEEC
T ss_pred             CceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccc
Confidence            99999999999999887788899999999999999999999999999998765544557999999999999999999999


Q ss_pred             CccCCCCCcCCCCCCCCCccEEEEeccccCCCCCCCccccCCccccCCHHHHhccchhccccCCCCCCCCCCCCCCCC
Q 008261          495 DVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITNAAEAQTYTAANFIAGSTWLGSTGFPFSLGL  572 (572)
Q Consensus       495 ~~i~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~~~~~~ea~~~t~~~~~~g~~W~p~~~~~~~~~~  572 (572)
                      +||.|+||.+|++.+.+++++|+||+|+|||+++++||+|++++++|+++||.+|+..+||+|++|+|.++|||.+||
T Consensus       242 ~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         242 NVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            999999999999988899999999999999999999999999888889999999999999999899999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure