Citrus Sinensis ID: 008264
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M817 | 607 | Probable peptide transpor | yes | no | 0.982 | 0.925 | 0.522 | 1e-173 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.982 | 0.950 | 0.511 | 1e-167 | |
| Q9LYD5 | 481 | Putative peptide/nitrate | no | no | 0.826 | 0.983 | 0.408 | 1e-110 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.956 | 0.882 | 0.361 | 1e-106 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.949 | 0.952 | 0.368 | 1e-102 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.931 | 0.908 | 0.351 | 1e-101 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.935 | 0.868 | 0.336 | 4e-97 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.944 | 0.947 | 0.363 | 7e-97 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.931 | 0.925 | 0.338 | 8e-96 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.931 | 0.838 | 0.344 | 2e-95 |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 608 bits (1567), Expect = e-173, Method: Compositional matrix adjust.
Identities = 297/568 (52%), Positives = 402/568 (70%), Gaps = 6/568 (1%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K KGG+ T+PFIIANEAFE++A+ G PNMI+YL R+Y TN++F+W+AA+NF
Sbjct: 19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG--CESATW 127
P++GA L+DSY+GR+ I + LGMVLLW T +LP KP CD G C S+T
Sbjct: 79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138
Query: 128 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
SQL LY AF L+S+GSGGIR SLAFGA+QLD + K++ L+S+F WYY + + +
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVAS 247
+A T IVYIQ++LGWK+GFGVPAV+ML++AL F LASP YV SL GL Q +VA+
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258
Query: 248 FKNRRTKLPTQATE-EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+K R+ LP + Y+H K S PS+ LRFLNKAC+ + E+++ DG A NP
Sbjct: 259 YKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWR 318
Query: 307 LCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPN---FEIPSGS 363
LCT ++VEELKALIKVIPIWSTGIM+++ SQSSF +LQA+SMDR ++ + F++P+GS
Sbjct: 319 LCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGS 378
Query: 364 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAA 423
F +F I+ L +W+ LYDRAV+PLASKI+G+P +LS+KLRMG+GL S +M A+VE+
Sbjct: 379 FGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESF 438
Query: 424 RRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIAS 483
RR AI++G +++ AVV +SAMW +P VL GLA A IGQTEF+YTE PKSMSSIA+
Sbjct: 439 RRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAA 498
Query: 484 TLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY 543
+L G G++ A+L+AS+++NAV+++T R G W+ NINKGHY+YYYW+L +S N +Y
Sbjct: 499 SLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIY 558
Query: 544 YLACCKAYGPFKGRVGTAFDDKDGMEEE 571
Y+ C +YGP +V + EEE
Sbjct: 559 YVICSWSYGPLVDQVRNGRVNGVREEEE 586
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 590 bits (1520), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/569 (51%), Positives = 392/569 (68%), Gaps = 7/569 (1%)
Query: 7 LINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAAT 66
+ + KGGL T+PFIIANE FE++A+ G NMILYL +Y + ++F+W AAT
Sbjct: 18 ITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAAT 77
Query: 67 NFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR-NGCESA 125
NF+P+VGA L+DSY+GR+ I + LLGMV+LW T +LP KP C C SA
Sbjct: 78 NFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSA 137
Query: 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185
T SQL LY AF L+S+GSGGIR SLAFGA+QLD + K++ L+S+F WYY S +
Sbjct: 138 TSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVA 197
Query: 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLV 245
++A T IVYIQD+LGWK+GFG+PA++MLL+ F ASP YVK + SL GL QV+
Sbjct: 198 VLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVA 257
Query: 246 ASFKNRRTKLPTQA-TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNP 304
A++ R LP + + Y+ K S PS+ LRFLNKAC + ++DL DG A N
Sbjct: 258 AAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDGLALNQ 317
Query: 305 NSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPN--FEIPSG 362
LCT +QVE+LKAL+KVIP+WSTGIM+++ +SQ+SF +LQA SMDR ++ N F+IP+G
Sbjct: 318 WRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTFQIPAG 377
Query: 363 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 422
SF +F I+ L W+ LYDRA+LPLASKI+G+P ++++K+RMG+GL S +M A VE
Sbjct: 378 SFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSATVEH 437
Query: 423 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 482
RR AI++G+++D + V +SAMW +P VL GLA A IGQTEF+YTE PKSMSSIA
Sbjct: 438 YRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMSSIA 497
Query: 483 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 542
++L G G++ AN++AS+I+NAV + +K+ GN WI NINKGHYDYYYW+L LS N +
Sbjct: 498 ASLFGLGMAVANILASVILNAVKNSSKQ-GNVSWIEDNINKGHYDYYYWVLAILSFVNVI 556
Query: 543 YYLACCKAYGPFKGRVGTAFDDKDGMEEE 571
YY+ C +YGP +V D +GM +E
Sbjct: 557 YYVVCSWSYGPTVDQVRN--DKVNGMRKE 583
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 227/556 (40%), Positives = 322/556 (57%), Gaps = 83/556 (14%)
Query: 1 MITEPLLINKNP-KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII 59
M E LL+ + K G+ T+PFI+A++A E++A G PNMIL+L EY M T A NI+
Sbjct: 1 MDQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANIL 60
Query: 60 FIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR 119
F+W+AATNF P+VGA +ADSY GR+ +IGFG L GMVLLW TTI+ P CD+L
Sbjct: 61 FLWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTII----RPECDKLT 116
Query: 120 NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK-SKGALQSYFSWY 178
N C+ T + + LY F L ++G+GG+RSS LAF A+QL ++ + +L++ F+WY
Sbjct: 117 NVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTSSLETLFNWY 176
Query: 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLP 238
Y V + ++ + +V++Q GW++GFGV M LS FF ASP+YV+ +
Sbjct: 177 YFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALSVALFFAASPYYVRFQK------ 230
Query: 239 GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPD 298
P+ N R K C +
Sbjct: 231 ------------------------------------PTRNSRNPWKLCRVQQ-------- 246
Query: 299 GRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIA-VTISQSSFLVLQASSMDRHV-TPN 356
VE+LK+LI VIPIWSTGI+++ VT Q SF+VLQA +MDRH
Sbjct: 247 --------------VEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFIQG 292
Query: 357 FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTA 416
FEIP GS+ IF +++ +++GLYD ++PL S +P +L + +RM G + S ++A
Sbjct: 293 FEIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCISA 352
Query: 417 WAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476
A E ARR A +E + ++SAMW LPY++L G+A A N I Q EF+Y+ELPK
Sbjct: 353 LAATEYARRKTARDESGT-------KLSAMWLLPYMILGGIAEALNTIAQNEFFYSELPK 405
Query: 477 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTAL 536
+MSS+A+TLS ++AA+L++S I+ VD T G WI NI++GH DYYYWLL L
Sbjct: 406 TMSSVATTLSSLNMAAASLISSWIITIVDVTTY----GSWITENIDEGHLDYYYWLLVGL 461
Query: 537 SMANFLYYLACCKAYG 552
S+ N LY++ C K+YG
Sbjct: 462 SLLNVLYFVWCKKSYG 477
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/564 (36%), Positives = 323/564 (57%), Gaps = 17/564 (3%)
Query: 8 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATN 67
+ K P GG R + FI+ NE ER+ ++G N ++YL + +++E A N+I IW+ TN
Sbjct: 48 VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106
Query: 68 FLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD-QLRNGCESAT 126
P+VGA ++D+YVGR++ I F F LLG++ + T P P +C+ Q C
Sbjct: 107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166
Query: 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186
Q+ L +S+GSGGIR S+ FG +Q D+ KG + S+F+WYY+ +
Sbjct: 167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKG-VASFFNWYYMTFTVVL 225
Query: 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246
I+ T +VYIQD + W +GF +P +M L+ + FF YV K S+ G+ QV+VA
Sbjct: 226 IITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVA 285
Query: 247 SFKNRRTKLPTQATEEMYHHG---KGSM--RLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ K R+ KLP + + ++ K S+ +L S R L+KA + E DLTP+G
Sbjct: 286 ARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLTPEGPP 343
Query: 302 SNPNSLCTVEQVEELKALIKVIPIWSTGIM-IAVTISQSSFLVLQASSMDRHVTPNFEIP 360
++ LC+V++VEE+K LI+++PIWS GI+ +A +Q +F V QA MDR++ P FEIP
Sbjct: 344 ADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIP 403
Query: 361 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 420
+GS ++ ++LT+ I++ YDR +P +I G ++L R+G G++F+ SM IV
Sbjct: 404 AGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIV 463
Query: 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 480
E RR +IN G D + MS W P L+L GL AFN+IGQ EF+ ++ P+ M S
Sbjct: 464 ERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRS 520
Query: 481 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 540
IA++L + ++ ++S ++ V + W+ N+N G DY+Y+L+ L + N
Sbjct: 521 IANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVN 580
Query: 541 FLYYLACCKAYGPFKGRVGTAFDD 564
+Y+ C + Y + +VG +D
Sbjct: 581 LVYFWYCARGY---RYKVGLPIED 601
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/559 (36%), Positives = 313/559 (55%), Gaps = 16/559 (2%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NK G + FI+ NE ER+A G N++ YL N A N + W+
Sbjct: 21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I F + GM LL + +PG KP C+ + C + S
Sbjct: 81 TPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA--DTCHPNS-S 137
Query: 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A +++LG+GGI+ +FGA+Q D+ D + K S+F+W+Y ++ +++
Sbjct: 138 QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENE-KIKKSSFFNWFYFSINVGALI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASF 248
A T +V+IQ N+GW GFGVP V M+++ FF S FY + S L + QV+VA+F
Sbjct: 197 AATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF 256
Query: 249 KNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 303
+ K+P T + + KGS +L+ ++NL+F +KA A + D DG N
Sbjct: 257 RKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA--AVESQSDSIKDGEV-N 313
Query: 304 PNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSG 362
P LC+V QVEELK++I ++P+W+TGI+ A SQ S+ VLQ ++MD+H+ NFEIPS
Sbjct: 314 PWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSA 373
Query: 363 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 422
S ++F +++ W +YD+ ++PLA K + RMGIGL+ S +M ++E
Sbjct: 374 SLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEV 433
Query: 423 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 482
R D + + MS WQ+P +L G A F IGQ EF+Y + P +M S+
Sbjct: 434 VRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLC 491
Query: 483 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 542
S LS ++ N ++++++ V ITK+ G GWIP N+N+GH DY+++LL LS NFL
Sbjct: 492 SALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFL 551
Query: 543 YYLACCKAYGPFKGRVGTA 561
YL K Y +K VG A
Sbjct: 552 VYLWISKRY-KYKKAVGRA 569
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/546 (35%), Positives = 318/546 (58%), Gaps = 13/546 (2%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ VG + N+++YL +NM++ A ++ I+ +NF IV A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC-DQLRNGCESATWSQLMPL 133
L DSY GRY+ + F C LG V + T ++ P C ++ + C + Q+M L
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141
Query: 134 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
A L+ +G+GGIR +L FGA+Q D +G ++S+F+WY+ + + +V++T I
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRG-IESFFNWYFFTFTFAQMVSLTLI 200
Query: 194 VYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PA++MLL + FF S YVK KA+ S + +T+V+V + K RR
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260
Query: 254 KLPTQATEEMYHHGKGSMR---LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K P E+Y++ + L +E RFL+K+ + ++ L DG + LC++
Sbjct: 261 K-PV-GPNELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDK-LNKDGSPVDAWKLCSM 317
Query: 311 EQVEELKALIKVIPIW-STGIMIAVTISQSSFLVLQASSMDRHVTP-NFEIPSGSFNIFA 368
+QVEE+K +I+V+P+W S + I Q+++ + Q+ DR + P +F+IP+GS+ +F
Sbjct: 318 QQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFL 377
Query: 369 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 428
+L +TI+I +YDR ++P K G+ ++ R+G GL SM AIVE RR +A
Sbjct: 378 MLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVA 437
Query: 429 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 485
+ + G++ A+ MS MW +P LVL G+A A +GQ EFYY + P++M S A +L
Sbjct: 438 LTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSL 497
Query: 486 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 545
G+ A+ +++ +++AV D T+ G W+P ++NKG +Y+Y+L+ + N Y+L
Sbjct: 498 YYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFL 557
Query: 546 ACCKAY 551
Y
Sbjct: 558 LVSHWY 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 184/546 (33%), Positives = 309/546 (56%), Gaps = 11/546 (2%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF V A
Sbjct: 46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPL 133
L D+Y GRY+ + C LG ++ T +P P AC + C + Q+ L
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165
Query: 134 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
G + +G+GGIR +LAFGA+Q + + +G + S+F+WY+ + + I+++T +
Sbjct: 166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLV 224
Query: 194 VYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PAV+M L+ L FF YVK KA+ S L G+ QV+ + K R
Sbjct: 225 VYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGL 284
Query: 254 KLPTQATEEMYHH---GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K Q +Y++ + +L ++ RFL+KA + PE L PDG+ ++P LCT+
Sbjct: 285 KPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTM 343
Query: 311 EQVEELKALIKVIPIWSTGIMIAVTISQS-SFLVLQASSMDRHV-TPNFEIPSGSFNIFA 368
+QVEE+K +++V+PIW + +TI+Q ++ V QA DR + + F IP+ ++ +F
Sbjct: 344 QQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFL 403
Query: 369 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 428
+ +T++I +YDR ++P +I G ++L R+G G+ F+TAS+ VE RR+ A
Sbjct: 404 MTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFA 463
Query: 429 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 485
+ + G++ + MSAMW +P L L+G+A AF IGQ EFYY + P++M S A ++
Sbjct: 464 LTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSI 523
Query: 486 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 545
G ++ + S ++ V T+ G W+ ++NKG D +Y+++ + NF Y+L
Sbjct: 524 FYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFL 583
Query: 546 ACCKAY 551
+ Y
Sbjct: 584 VMSRWY 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 204/561 (36%), Positives = 311/561 (55%), Gaps = 21/561 (3%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NKN G + FI+ E ER+A G + N+I YL ++ NME +A+ + W+
Sbjct: 22 NKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYA 81
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I + GM LL + +PG P + C AT
Sbjct: 82 TPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGET---CH-ATAG 137
Query: 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A L++LG+GGI+ +FGA+Q D D K K + S+F+W+Y ++ +++
Sbjct: 138 QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTD-EKEKESKSSFFNWFYFVINVGAMI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASF 248
A + +V+IQ N+GW G GVP V M ++ + FF S FY K S L + QV+VAS
Sbjct: 197 ASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASC 256
Query: 249 KNRRTKLPTQATEEMYHHGK-------GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ + K+P E + + + GS +L ++ L F +KA A E D ++
Sbjct: 257 RKSKVKIPED--ESLLYENQDAESSIIGSRKLEHTKILTFFDKA--AVETESDNKGAAKS 312
Query: 302 SNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIP 360
S+ LCTV QVEELKALI+++PIW+TGI+ A SQ + VLQ +++D+H+ PNF+IP
Sbjct: 313 SSWK-LCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIP 371
Query: 361 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 420
S S ++F L++ W +YD+ ++P A K G + R+GIGL+ S SM + I+
Sbjct: 372 SASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGIL 431
Query: 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 480
E AR + + ++ + M+ WQ+P L G A F IGQ EF+Y + P +M S
Sbjct: 432 EVARLNYVQTHNLYNE--ETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRS 489
Query: 481 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 540
+ S LS ++ N +++ ++ V +T+ GG GWI N+N GH DY++WLL LS N
Sbjct: 490 LCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLN 549
Query: 541 FLYYLACCKAYGPFKGRVGTA 561
FL YL K Y +K G A
Sbjct: 550 FLVYLWIAKWY-TYKKTTGHA 569
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 351 bits (901), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 189/558 (33%), Positives = 323/558 (57%), Gaps = 25/558 (4%)
Query: 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVG 73
GG R + FI+ NE E++ ++G + N +LYL ++ME A N+ ++W TNF P++G
Sbjct: 16 GGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAPLLG 75
Query: 74 ALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPG-AKPPACDQLRNGCESATWSQLMP 132
AL++D+Y+GR++ I + +LG++ + T LP PP + + C+ QL
Sbjct: 76 ALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQLGI 135
Query: 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192
L+ G +S+GSGGIR S+ FG +Q D+ KG + S+F+WYY+ ++ I + T
Sbjct: 136 LFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKG-VASFFNWYYLTLTMVLIFSHTV 194
Query: 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252
+VY+Q + W +GF +P +M + + FF+ FYV K S+ G+ +V+VA+ K R
Sbjct: 195 VVYLQ-TVSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRD 253
Query: 253 TK--LPTQATEEMYHH--GKGSMRLMP-SENLRFLNKACMAKHPEQDLTPDGRASNPNSL 307
K L TEE Y G + +P ++ +FL+KA + + DLT +G +N L
Sbjct: 254 LKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVIL--DGDLTSEGVPANKWRL 311
Query: 308 CTVEQVEELKALIKVIPIWSTGIM-IAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNI 366
C++++VEE+K LI+V+P+WS GI+ I +Q++F+V QA+ MDRH+ P+FEIP+ S +
Sbjct: 312 CSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIPAASITV 371
Query: 367 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRS 426
+ +T+ IW+ +Y+ ++P ++ + +++L RMGIG++F+ SM VE RR+
Sbjct: 372 ISYITIGIWVPIYEHLLVPFLWRM--RKFRVTLLQRMGIGIVFAILSMFTAGFVEGVRRT 429
Query: 427 IAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS 486
A + QMS W L+L GL +FN IG EF+ ++ P+ M SIA++L
Sbjct: 430 RATE---------MTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMRSIANSLF 480
Query: 487 GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA 546
+AAN ++SL++ V ++ + W+ ++++G DY+Y+L+ L + N +Y+
Sbjct: 481 PLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLGVVNLVYFWY 540
Query: 547 CCKAYGPFKGRVGTAFDD 564
C Y + + G+ +D
Sbjct: 541 CAHRY---QYKAGSQIED 555
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 188/546 (34%), Positives = 310/546 (56%), Gaps = 13/546 (2%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF + A
Sbjct: 64 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSGTINFGTFIAA 123
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLY 134
L D+Y GRY+ + C LG ++ T +P P AC + CE + Q++ L
Sbjct: 124 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGN-KISCEGPSVGQILFLL 182
Query: 135 FAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194
G + +G+GGIR +LAFGA+Q + + KG + S+F+WY+ + + I+++T +V
Sbjct: 183 MGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKKG-INSFFNWYFFTFTFAQIISLTAVV 241
Query: 195 YIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254
YIQ N+ W +G +P +M L+ + FF YVK KA+ S L G+ +V+ A+ K R K
Sbjct: 242 YIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLK 301
Query: 255 LPTQATEEMYHH---GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE 311
Q +Y+H + L ++ RFL+KA + PE+ L DG AS+P LCT++
Sbjct: 302 PVKQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAAIMT-PEEKLNSDGTASDPWKLCTLQ 360
Query: 312 QVEELKALIKVIPIW--STGIMIAVTISQSSFLVLQASSMDRHV-TPNFEIPSGSFNIFA 368
QVEE+K +++VIPIW ST +A+TI Q ++ V QA DR + + F IP+ ++ +F
Sbjct: 361 QVEEVKCIVRVIPIWFASTIYYLAITI-QMTYPVFQALQSDRRLGSGGFRIPAATYVVFL 419
Query: 369 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 428
+ +T++I YDR ++P ++ G +SL R+G G F+ S+ +E RR+ A
Sbjct: 420 MTGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFAIMSLLVSGFIEERRRNFA 479
Query: 429 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 485
+ + G++ + MSA+W +P L L+G+A AF IGQ EFYY + P++M S A ++
Sbjct: 480 LTKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQMEFYYKQFPENMKSFAGSI 539
Query: 486 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 545
G ++ +AS +++ V T +G W+ ++NK DY+Y++LT L + N Y+L
Sbjct: 540 FYVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKLDYFYFMLTGLMVVNMAYFL 599
Query: 546 ACCKAY 551
+ Y
Sbjct: 600 LMARWY 605
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | ||||||
| 255550992 | 578 | nitrate transporter, putative [Ricinus c | 0.979 | 0.968 | 0.619 | 0.0 | |
| 224087732 | 605 | predicted protein [Populus trichocarpa] | 0.982 | 0.928 | 0.598 | 0.0 | |
| 224106908 | 606 | predicted protein [Populus trichocarpa] | 0.989 | 0.933 | 0.589 | 0.0 | |
| 224141763 | 581 | predicted protein [Populus trichocarpa] | 0.996 | 0.981 | 0.594 | 0.0 | |
| 224141759 | 564 | predicted protein [Populus trichocarpa] | 0.961 | 0.975 | 0.600 | 0.0 | |
| 224141757 | 568 | predicted protein [Populus trichocarpa] | 0.965 | 0.971 | 0.605 | 0.0 | |
| 356507909 | 568 | PREDICTED: probable peptide transporter | 0.968 | 0.975 | 0.591 | 0.0 | |
| 224141761 | 515 | predicted protein [Populus trichocarpa] | 0.898 | 0.998 | 0.621 | 0.0 | |
| 255549914 | 612 | nitrate transporter, putative [Ricinus c | 0.982 | 0.918 | 0.555 | 0.0 | |
| 297743243 | 622 | unnamed protein product [Vitis vinifera] | 0.994 | 0.914 | 0.557 | 0.0 |
| >gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/562 (61%), Positives = 429/562 (76%), Gaps = 2/562 (0%)
Query: 7 LINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAAT 66
LI+ N KGG R LPFI+ N AFE++A+ G TPNMILYL REY +E NIIF W+AAT
Sbjct: 16 LISSNQKGGFRVLPFIVVNMAFEKVASFGLTPNMILYLTREYRIEAAKGANIIFFWSAAT 75
Query: 67 NFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL-RNGCESA 125
NF PI+GA +ADSYVGR+RMIGFG LLG++LLW T ++P A+P CDQ + C+S
Sbjct: 76 NFTPILGAFIADSYVGRFRMIGFGSIASLLGIILLWLTAVIPQARPLPCDQFTSDSCQSP 135
Query: 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185
T QL+ LY +FGL+S+G+GGIRSSSLAFGA+QL G K G L+ + SWYYV VS S
Sbjct: 136 TTLQLLLLYSSFGLLSIGAGGIRSSSLAFGADQLGMGQSLKRAGILERFISWYYVLVSVS 195
Query: 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLV 245
++VA+TCIVYIQD +GWKVGFGVP V+M ++ LSFF AS FYVKSK S G QVL
Sbjct: 196 AVVAMTCIVYIQDAMGWKVGFGVPVVLMAIAVLSFFSASSFYVKSKPTASSFTGFAQVLA 255
Query: 246 ASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305
A++ NR +Q + + YH+ KG+ + PSE LRFLNKAC+ ++PE+DLTPDGRASNP
Sbjct: 256 AAYHNRSIPFSSQDSNDGYHNRKGATVVAPSEMLRFLNKACIIENPEEDLTPDGRASNPW 315
Query: 306 SLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFN 365
SLCTV QVEELKALIK+IPIW +G++++V ++QSSF VLQAS+MDRH+ FEIP+GS N
Sbjct: 316 SLCTVNQVEELKALIKIIPIWLSGMIMSVNVAQSSFPVLQASTMDRHIISKFEIPAGSMN 375
Query: 366 IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARR 425
+F +++L IW+ LYDR ++PLASK++GKP +LSLK RMGIG+L S+ASM A+AI E RR
Sbjct: 376 VFMVISLAIWVSLYDRVIVPLASKLRGKPVRLSLKQRMGIGILLSSASMLAFAIAEKNRR 435
Query: 426 SIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 485
AI EG SDD AVV MS +W LPYLVL GLA F+ IGQ EFYYTELPKSMSSIA+TL
Sbjct: 436 ERAIREGFSDDPNAVVNMSVLWLLPYLVLCGLAETFSAIGQNEFYYTELPKSMSSIAATL 495
Query: 486 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 545
GLSAANL+AS IM+ +D +KRGG W+ SNINKGHYDYYYWLL +LS+ NF+YYL
Sbjct: 496 FDMGLSAANLLASFIMSTIDSFSKRGGEESWVSSNINKGHYDYYYWLLASLSLLNFVYYL 555
Query: 546 ACCKAYGPFKGRVGTAFDDKDG 567
AC K YGP + + G A DD DG
Sbjct: 556 ACSKGYGPCRAKEGNAPDD-DG 576
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/588 (59%), Positives = 429/588 (72%), Gaps = 26/588 (4%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL +PKGG+R L FIIANEA ER+A+ G + NMILYL REY M+ + I+F
Sbjct: 1 MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL----------------------GM 98
+++AA NF+PI+GA LAD+YVGRY MIGFGC LL GM
Sbjct: 59 LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118
Query: 99 VLLWSTTILPGAKPPACDQLRNGC-ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 157
VLLW TTI+PGA+ P+C Q + C AT QL+ LYF GLMS+G+GGIRS SLAFGA+
Sbjct: 119 VLLWLTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178
Query: 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217
QL K D K G L+S+FSWYYV SAS +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 179 QLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILST 238
Query: 218 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 277
LSFFLASP YVK KA S L G +VLVASF+ RR +L + T+E+YHH KGS ++PSE
Sbjct: 239 LSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSE 298
Query: 278 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTIS 337
+RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+QVEELKALIKVIPIWSTG++++V +
Sbjct: 299 RIRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNVC 358
Query: 338 QSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 397
Q+SFL+LQAS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 359 QNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRL 418
Query: 398 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 457
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G
Sbjct: 419 GLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGF 478
Query: 458 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 517
+ A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 479 SEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVCGFIGEANQESWV 538
Query: 518 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDD 564
SNINKGHYDYYYWLL +L ANF+YYLAC KAYGP K G+ G DD
Sbjct: 539 SSNINKGHYDYYYWLLYSLGFANFIYYLACSKAYGPCKGGQRGITGDD 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106908|ref|XP_002333609.1| predicted protein [Populus trichocarpa] gi|222837572|gb|EEE75937.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/592 (58%), Positives = 431/592 (72%), Gaps = 26/592 (4%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL +PKGG+R L FIIANEA ER+A+ G + NMILYL REY M+ + I+F
Sbjct: 1 MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL----------------------GM 98
+++AA NF+PI+GA LAD+YVGRY MIGFGC LL GM
Sbjct: 59 LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118
Query: 99 VLLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 157
VLLW TTI+PGA P+C Q + C + AT QL+ LYF GLMS+G+GGIRS SLAFGA+
Sbjct: 119 VLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178
Query: 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217
QL K D K G L+S+FSWYYV SAS +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 179 QLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILST 238
Query: 218 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 277
LSFFLASP YVK K S L G +VLVAS++ RR +L T+E+YHH KGS ++PSE
Sbjct: 239 LSFFLASPIYVKPKVKASWLIGFARVLVASYRKRRIELSWLDTDELYHHRKGSALVVPSE 298
Query: 278 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTIS 337
+RFLNKAC+ K+PE+DL PDGRAS+P +LCTV+QVEELKALIKVIPIWSTG++++V +
Sbjct: 299 RIRFLNKACVIKNPEEDLMPDGRASDPWTLCTVDQVEELKALIKVIPIWSTGVLVSVNVC 358
Query: 338 QSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 397
Q+SFL+LQAS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 359 QNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRL 418
Query: 398 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 457
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G
Sbjct: 419 GLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGF 478
Query: 458 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 517
+ A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 479 SEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESWV 538
Query: 518 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDDKDGM 568
SNINKGHYDYYYWLL++L ANF+YYLAC KAYGP K G+ G D ++G+
Sbjct: 539 SSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGPCKGGQRGITGDVREGL 590
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141763|ref|XP_002324234.1| predicted protein [Populus trichocarpa] gi|222865668|gb|EEF02799.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/570 (59%), Positives = 431/570 (75%)
Query: 2 ITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFI 61
I EPLL + KGGLR L FII NEAFER+A G + N+ILYL REY ++ I+++
Sbjct: 11 IKEPLLSSSTTKGGLRALIFIIVNEAFERLANYGLSTNLILYLTREYGIDAVNGAQILYL 70
Query: 62 WTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG 121
+AAT+F P +GA LAD+YVGRY MIGFGC CLLG++LLW TTI+PG +PP C Q +
Sbjct: 71 HSAATSFTPFIGAFLADTYVGRYFMIGFGCIACLLGVILLWLTTIIPGTRPPPCVQFHDS 130
Query: 122 CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181
CESA+ QL+ LY + GLM++G+GGIRSSSLAFGAEQL K D K G L+S+F WYY
Sbjct: 131 CESASTLQLLLLYSSLGLMAIGAGGIRSSSLAFGAEQLGKRDTLKRAGILESFFRWYYAT 190
Query: 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLT 241
VS + +A+TCI+YIQDN+GWKVGFG+P V+M+LS LSFFLASP YVKSKA L G
Sbjct: 191 VSVALFLAMTCILYIQDNMGWKVGFGIPVVLMILSTLSFFLASPIYVKSKAKAGWLDGFA 250
Query: 242 QVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+VLVASF+NR KL +Q T+++YHH KGS L+PSE LRFLNKAC+ ++P++DL PDGRA
Sbjct: 251 RVLVASFRNRSIKLSSQVTDDVYHHRKGSRLLVPSEKLRFLNKACVIRNPKEDLIPDGRA 310
Query: 302 SNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPS 361
SNP SLCTV++VEELK+LIKVIPIWSTG+++++ + Q SF+VLQAS+MDRH+T F++P+
Sbjct: 311 SNPWSLCTVDEVEELKSLIKVIPIWSTGVLMSINVLQHSFIVLQASTMDRHITSKFQVPA 370
Query: 362 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 421
GSF F + + IWI LYDR +PLASKI+GKP +L LK R+GIG+L S+A+M A AI+E
Sbjct: 371 GSFTAFQLFSSVIWIALYDRVAIPLASKIRGKPTRLGLKQRIGIGILSSSAAMAALAIIE 430
Query: 422 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 481
+ RR AI EG SDD +V+ +SA+W L Y ++G A AF IGQ EF+YTELPKSMSS+
Sbjct: 431 SVRRKTAIKEGFSDDPNSVLHISALWLLLYFFITGFAEAFCGIGQNEFFYTELPKSMSSV 490
Query: 482 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 541
AS L GLS +NL+ASL++ V + K W+ SNINKGHYDYYYWLL LS+ANF
Sbjct: 491 ASNLFEMGLSVSNLIASLLVTIVRNFFKGNDQESWLSSNINKGHYDYYYWLLAGLSLANF 550
Query: 542 LYYLACCKAYGPFKGRVGTAFDDKDGMEEE 571
+YY AC KAYGP KG+ G A D + + +E
Sbjct: 551 IYYRACSKAYGPCKGQEGNATDGGEALTDE 580
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141759|ref|XP_002324232.1| predicted protein [Populus trichocarpa] gi|222865666|gb|EEF02797.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/553 (60%), Positives = 417/553 (75%), Gaps = 3/553 (0%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL N KGG+RT+PFI+ANEAFER+A+ G + NMI+YL REY M+ A ++F
Sbjct: 1 MITEPLL--SNGKGGIRTIPFILANEAFERLASFGLSTNMIMYLTREYGMDAAQAAQLLF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120
++++ATNF PI+ A+LADSYVGRYRMIGFGC LLGMVLLW TT P A+ P C +
Sbjct: 59 LFSSATNFTPILXAVLADSYVGRYRMIGFGCMASLLGMVLLWLTT-FPEARQPLCVHFSH 117
Query: 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C S + QL+ LY AFG M++G+GGIRSSSLAFGA+QL + +S+F WYYV
Sbjct: 118 SCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGADQLSITHNLQRARIRESFFRWYYV 177
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGL 240
V+AS VA+TC+VYIQ+N+GW VGFGVP V+M+LSALSF LASPFYVKSK S + GL
Sbjct: 178 TVTASVFVAMTCVVYIQENMGWMVGFGVPVVLMILSALSFSLASPFYVKSKPKASWITGL 237
Query: 241 TQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGR 300
QV+VASF+NR +L TQAT E+ +H GS+ +PS+ LRF NKAC+ +P+ D+TPDG
Sbjct: 238 AQVVVASFRNRSVELSTQATVEVRYHTTGSILPVPSKRLRFFNKACIVGNPQVDVTPDGN 297
Query: 301 ASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIP 360
A +P SLCTV+QVE+LK LIKVIPIWS+G+++ V +SQ SF+VLQ S+MDRH+T FEIP
Sbjct: 298 ALDPWSLCTVDQVEDLKTLIKVIPIWSSGMLMFVNVSQGSFIVLQVSTMDRHITSKFEIP 357
Query: 361 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 420
+ +F FA+L + +W+ LYDR ++PL SKIKG+P L LK RMGIG+L ST SM A AI
Sbjct: 358 AATFLSFAVLVIVLWVALYDRIIIPLVSKIKGQPVCLGLKKRMGIGILLSTTSMAALAIA 417
Query: 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 480
E+ RR AI EG SD A + +S LP+L LSG+A AF IGQ EF+YTELPKSMSS
Sbjct: 418 ESVRRETAIKEGFSDRPDAGLHISTFLFLPFLALSGVAEAFTPIGQNEFFYTELPKSMSS 477
Query: 481 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 540
+ASTL+G G+S A+LV+S I+ AV D+T G W+ SNINKGHYDYYYWLL +LS+ N
Sbjct: 478 VASTLNGIGMSVASLVSSFIVRAVRDLTTVEGQESWVSSNINKGHYDYYYWLLASLSLVN 537
Query: 541 FLYYLACCKAYGP 553
FLYYLAC K+YGP
Sbjct: 538 FLYYLACSKSYGP 550
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141757|ref|XP_002324231.1| predicted protein [Populus trichocarpa] gi|222865665|gb|EEF02796.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/555 (60%), Positives = 423/555 (76%), Gaps = 3/555 (0%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL N+ KGG+RTLPFI+ANEAFE +A G PN+ILYL REY ++ +++F
Sbjct: 10 MITEPLLSNR--KGGIRTLPFILANEAFESLANYGLFPNLILYLTREYRIDAAKGAHVLF 67
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120
+ ++A NF PI+GA LAD+YVGRYRMIGFGC LLGMVLLW TT P A+PP C Q
Sbjct: 68 LLSSAINFTPILGAFLADTYVGRYRMIGFGCMASLLGMVLLWLTT-FPEARPPPCVQFSY 126
Query: 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C+SAT QL+ LY AF +++G+GGIRSSSLAFGA+QL + + +S+FSWYY
Sbjct: 127 DCKSATTLQLLLLYTAFCFLAIGAGGIRSSSLAFGADQLGTSNSLEHARIRESFFSWYYG 186
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGL 240
V+AS + +T +VYIQDN+GW VGFGVP V+M+LS+LSFF+ASP YVKSK S + GL
Sbjct: 187 IVAASVFLGMTFVVYIQDNIGWMVGFGVPVVLMILSSLSFFVASPSYVKSKPKASWITGL 246
Query: 241 TQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGR 300
QV+V S +NRR KL +QAT+++ +H GSM L+PSE LRFLNKAC+ ++P++DLTPDG+
Sbjct: 247 AQVVVGSIRNRRIKLSSQATDKVDYHTTGSMLLVPSEKLRFLNKACIIRNPQEDLTPDGK 306
Query: 301 ASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIP 360
AS+P SLCTV+QVE+LKALIKVIPIWS G++ +V +SQ SFLVLQAS+M+RH+T FE+P
Sbjct: 307 ASDPWSLCTVDQVEDLKALIKVIPIWSAGMLKSVNVSQGSFLVLQASTMNRHITSKFEVP 366
Query: 361 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 420
+ SF +L +T W+ LYDR ++PL SK+ GK L+LK RMGIG+L ST SM A AI
Sbjct: 367 AASFPSIVVLVITTWVVLYDRIIIPLVSKVSGKIVCLNLKQRMGIGILLSTISMAALAIA 426
Query: 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 480
E+ RR+ AI EG D+ A + +SAMW LPY VLSGLA AFN IGQ EF+YTELPKSMSS
Sbjct: 427 ESFRRATAIKEGFPDNPNAELHISAMWLLPYFVLSGLAEAFNAIGQNEFFYTELPKSMSS 486
Query: 481 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 540
+ASTL G GLSAA+LV+S I++AV D TK W+ SNINKGHYDYYYW+LT LS+ N
Sbjct: 487 VASTLQGLGLSAASLVSSFIVSAVRDFTKGEAQESWVSSNINKGHYDYYYWILTILSLVN 546
Query: 541 FLYYLACCKAYGPFK 555
F+YYL C K YGP +
Sbjct: 547 FIYYLVCSKTYGPCR 561
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507909|ref|XP_003522705.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/560 (59%), Positives = 419/560 (74%), Gaps = 6/560 (1%)
Query: 1 MITEPLLI--NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNI 58
+I EPLL N N KGG RTLPFIIANEAFER+A++G PNMILYL REY M+T ATN
Sbjct: 10 VIEEPLLSKQNSNAKGGFRTLPFIIANEAFERLASLGLMPNMILYLTREYGMQTAGATNF 69
Query: 59 IFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118
+ +W+AA+NF P VGA+L+DSYVGRY MI FG LLGMVLLW TT++P +KP C+Q
Sbjct: 70 LLLWSAASNFTPFVGAVLSDSYVGRYSMIAFGSIASLLGMVLLWLTTLIPLSKP-LCNQF 128
Query: 119 RNGCE-SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177
N C S T L+ L+ +F LMS+G+GGIRSSSLAFG +QL K D K+ G +SYFSW
Sbjct: 129 TNSCNNSPTTIHLLILHSSFALMSIGAGGIRSSSLAFGVDQLSKRD--KNAGIKESYFSW 186
Query: 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLL 237
YY V+ SS++ +T +VYIQDN+GW VGFG+P ++M ++ SFFLASPFYV + ++L
Sbjct: 187 YYAIVAMSSLIGLTVVVYIQDNMGWAVGFGIPVILMFVATASFFLASPFYVMVEVKRNML 246
Query: 238 PGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTP 297
GL QVLVAS+KNR +LP + +YH K S LMP+E LRFLNKAC+ ++ QDLTP
Sbjct: 247 SGLAQVLVASYKNRLLQLPQETENGIYHLEKDSDLLMPTEKLRFLNKACLIRNSLQDLTP 306
Query: 298 DGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNF 357
+GRA NP +LCTV+QVEELKALIK++PIWSTGIM+ V ISQ S LVL+ASSMDRH+T NF
Sbjct: 307 EGRALNPWNLCTVDQVEELKALIKIVPIWSTGIMMGVNISQGSLLVLEASSMDRHITSNF 366
Query: 358 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAW 417
EIPSGSF F I++L +W+ +YDR ++P+ASKIKG P + K +MGIGLL ++ +
Sbjct: 367 EIPSGSFVTFMIVSLVLWVIIYDRILVPVASKIKGSPACIGAKQKMGIGLLTGCIAIASL 426
Query: 418 AIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 477
A+VE RR IAI +G D +AVV MSA+W LP +L+GLA A ++GQ EF+ TELP+S
Sbjct: 427 AVVEDIRRKIAIEKGYEDQPQAVVNMSALWLLPRQILNGLAEALGVVGQNEFFLTELPQS 486
Query: 478 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALS 537
MSS+ASTL+G G S ANLVAS I++ VD++T GG+ W+ SNINKGHYDYYY L+ AL
Sbjct: 487 MSSLASTLNGLGSSVANLVASFILSVVDNVTGGGGHESWLSSNINKGHYDYYYTLICALC 546
Query: 538 MANFLYYLACCKAYGPFKGR 557
NF+Y+L C K+YGP K R
Sbjct: 547 FVNFVYFLYCSKSYGPCKNR 566
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141761|ref|XP_002324233.1| predicted protein [Populus trichocarpa] gi|222865667|gb|EEF02798.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/515 (62%), Positives = 394/515 (76%), Gaps = 1/515 (0%)
Query: 40 MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99
MILYL REY M+ + I+F+++AA NF+PI+GA LAD+YVGRY MIGFGC LLGMV
Sbjct: 1 MILYLTREYGMDAASGAQILFLYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLGMV 60
Query: 100 LLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 158
LLW TTI+PGA P+C Q + C + AT QL+ LYF GLMS+G+GGIRS SLAFGA+Q
Sbjct: 61 LLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGADQ 120
Query: 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218
L K D K G L+S+FSWYYV SAS +++TC+VYIQ+ +GWKVGFGVP V+M+LS L
Sbjct: 121 LSKRDSLKHAGILESFFSWYYVISSASVFISMTCVVYIQEAMGWKVGFGVPVVLMILSTL 180
Query: 219 SFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN 278
SFFLASP YVK KA S L G +VLVASF+ RR +L + T+E+YHH KGS ++PSE
Sbjct: 181 SFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSER 240
Query: 279 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ 338
+RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+QVEELKALIKVIPIWSTG++++V + Q
Sbjct: 241 IRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNVCQ 300
Query: 339 SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLS 398
+SFL+LQAS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 301 NSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRLG 360
Query: 399 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLA 458
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G +
Sbjct: 361 LKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGFS 420
Query: 459 MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 518
A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 421 EAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESWVS 480
Query: 519 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 553
SNINKGHYDYYYWLL++L ANF+YYLAC KAYGP
Sbjct: 481 SNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGP 515
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/562 (55%), Positives = 407/562 (72%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K+ KGGL T+PFIIANEAFE++++ G PNMI YL ++Y + NIIF+W AATNF+
Sbjct: 26 KSRKGGLITMPFIIANEAFEKVSSYGLLPNMIFYLMKDYGLGVAKGANIIFLWNAATNFM 85
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQ 129
P++GA ++DSY+GRY IG G LLG VLLW TT++P +KPP CD + C+S T Q
Sbjct: 86 PLLGAFISDSYLGRYLTIGLGSIFSLLGTVLLWLTTMIPQSKPPLCDLMTQNCKSPTAGQ 145
Query: 130 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVA 189
+ L + +S+G+GGIR SLAFGA+QLD K++ L+SYF WYY + S ++A
Sbjct: 146 ITMLLSSMAFISIGAGGIRPCSLAFGADQLDNKSNPKNERILESYFGWYYASTAISVLIA 205
Query: 190 VTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249
+T IVYIQD+ GW+VGFGVPA+++ LSA FF+ASP Y+K KA+ SLL G QVLV ++K
Sbjct: 206 LTGIVYIQDHHGWRVGFGVPAILVFLSAFLFFIASPLYLKQKASKSLLAGFAQVLVVAYK 265
Query: 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT 309
NR+ P ++ YH K S + P+EN+RFLNKAC+ ++ EQDL PDG ASNP SLCT
Sbjct: 266 NRKIPFPPTNSDSKYHRRKNSEYITPTENIRFLNKACIIRNAEQDLAPDGSASNPWSLCT 325
Query: 310 VEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAI 369
+EQVEELKALI+VIPIWSTGIM+++ +SQ SF VLQASSMDRH++ F++P+GSF F +
Sbjct: 326 IEQVEELKALIRVIPIWSTGIMMSINVSQGSFQVLQASSMDRHLSSKFQVPAGSFATFVV 385
Query: 370 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI 429
+++ IWI LYDRA+LPLA+KIKGKP +L +KLRMGIGL S M IVE RR AI
Sbjct: 386 ISMAIWIVLYDRAILPLATKIKGKPVRLGVKLRMGIGLFLSCMGMVVAGIVENVRRRKAI 445
Query: 430 NEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 489
+EG ++ AVVQMSA W P L+G A A N IGQTEFYYTE PKSMSSIA L G G
Sbjct: 446 HEGYLNNPNAVVQMSAFWLAPQYCLNGFAEALNAIGQTEFYYTEFPKSMSSIAGALFGLG 505
Query: 490 LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 549
++ ANL+A++I++ V++IT +GG GW+PSNIN+GHYD YYWLL +S N LY+L C
Sbjct: 506 MAVANLLATVILSLVNNITSKGGKVGWVPSNINQGHYDNYYWLLAIMSAVNLLYFLICSW 565
Query: 550 AYGPFKGRVGTAFDDKDGMEEE 571
YGP K ++ D+ +G + E
Sbjct: 566 GYGPCKEQITKVSDEGNGFKHE 587
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743243|emb|CBI36110.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/569 (55%), Positives = 418/569 (73%)
Query: 3 TEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIW 62
+E +++ KGGL T+PFIIANEAFER+A+ G PNMILYL ++Y++ TNI+F+W
Sbjct: 7 SEQRKMSQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLGVAKGTNILFLW 66
Query: 63 TAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGC 122
+AATNFLP+VGA L+DSY+GR+ IG G T LLGM+LLW T ++P KPP CD L C
Sbjct: 67 SAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTKPPHCDLLTQSC 126
Query: 123 ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182
++ T +Q + LY +F LMS+G+GG+R SLAFGA+QLDK D K++ L+S+FSWYY
Sbjct: 127 KAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNERVLESFFSWYYASA 186
Query: 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQ 242
+ S ++A+T IVYIQ +LGW+VGFGVPA++M +AL FFLASPFY+K KA+ SLL G Q
Sbjct: 187 ALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYIKQKASRSLLTGFVQ 246
Query: 243 VLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRAS 302
VLV ++KNR+ P + T+ YH+ K S ++P++ LRFLNKAC+ + PE+D+ DG AS
Sbjct: 247 VLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACIIRSPERDINSDGLAS 306
Query: 303 NPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSG 362
NP SLCTV+QVEELKALIKVIP+WSTGIM+++ S SSF VLQA+SMDRHV +F+IP+G
Sbjct: 307 NPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANSMDRHVFSSFQIPAG 366
Query: 363 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 422
S+ +F ++ L +W+ LYDR +LPLASK++GK +L +K RMGIGL S M AIVE
Sbjct: 367 SYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLFLSCLGMVVAAIVEN 426
Query: 423 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 482
RR AI +G+ ++ + +V MSAMW +P L GLA AFN IGQTEFYY+E PKSMSSIA
Sbjct: 427 VRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTEFYYSEFPKSMSSIA 486
Query: 483 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 542
+ L G G++ ANL+AS+I++AV+ +T RGG W+ +NINKGHYD YYWLL +S N L
Sbjct: 487 AALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDNYYWLLAIMSAINLL 546
Query: 543 YYLACCKAYGPFKGRVGTAFDDKDGMEEE 571
YYL C YGP + D+ ME E
Sbjct: 547 YYLVCSYFYGPCVEQGTKVSDEGKSMEGE 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | ||||||
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.979 | 0.922 | 0.473 | 3.4e-141 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.989 | 0.957 | 0.463 | 4.6e-137 | |
| TAIR|locus:2144281 | 481 | AT5G11570 [Arabidopsis thalian | 0.428 | 0.509 | 0.437 | 6e-99 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.956 | 0.882 | 0.336 | 2.9e-87 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.949 | 0.952 | 0.345 | 1.8e-85 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.961 | 0.936 | 0.320 | 2.4e-83 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.972 | 0.932 | 0.329 | 4.5e-82 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.944 | 0.947 | 0.338 | 7.4e-82 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.942 | 0.875 | 0.310 | 5.2e-81 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.921 | 0.893 | 0.342 | 1.4e-80 |
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
Identities = 269/568 (47%), Positives = 364/568 (64%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K KGG+ T+PFIIANEAFE++A+ G PNMI+YL R+Y TN++F+W+AA+NF
Sbjct: 19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG--CESATW 127
P++GA L+DSY+GR+ I + LGMVLLW T +LP KP CD G C S+T
Sbjct: 79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138
Query: 128 SQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
SQL LY AF AFGA+QLD + K++ L+S+F WYY + + +
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVAS 247
+A T IVYIQ++LGWK+GFGVPAV+M P YV SL GL Q +VA+
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258
Query: 248 FKNRRTKLPTQATE-EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+K R+ LP + Y+H K S PS+ LRFLNKAC+ + E+++ DG A NP
Sbjct: 259 YKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWR 318
Query: 307 LCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVT---PNFEIPSGS 363
LCT ++VEELKALIKVIPIWSTGIM+++ SQSSF +LQA+SMDR ++ +F++P+GS
Sbjct: 319 LCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGS 378
Query: 364 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAA 423
F +F I+ L +W+ LYDRAV+PLASKI+G+P +LS+KLRMG+GL S +M A+VE+
Sbjct: 379 FGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESF 438
Query: 424 RRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXX 483
RR AI++G +++ AVV +SAMW +P VL GLA A IGQTEF+YTE PKSM
Sbjct: 439 RRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAA 498
Query: 484 XXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY 543
++NAV+++T R G W+ NINKGHY+YYYW+L +S N +Y
Sbjct: 499 SLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIY 558
Query: 544 YLACCKAYGPFKGRVGTAFDDKDGMEEE 571
Y+ C +YGP +V +G+ EE
Sbjct: 559 YVICSWSYGPLVDQVRNG--RVNGVREE 584
|
|
| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1342 (477.5 bits), Expect = 4.6e-137, P = 4.6e-137
Identities = 266/574 (46%), Positives = 359/574 (62%)
Query: 2 ITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFI 61
+ +P+ + KGGL T+PFIIANE FE++A+ G NMILYL +Y + ++F+
Sbjct: 14 LQQPIT-RRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFM 72
Query: 62 WTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN- 120
W AATNF+P+VGA L+DSY+GR+ I + LLGMV+LW T +LP KP C
Sbjct: 73 WVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGT 132
Query: 121 GCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C SAT SQL LY AF AFGA+QLD + K++ L+S+F WYY
Sbjct: 133 NCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYA 192
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGL 240
S + ++A T IVYIQD+LGWK+GFG+PA++M P YVK + SL GL
Sbjct: 193 SSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGL 252
Query: 241 TQVLVASFKNRRTKLPTQA-TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDG 299
QV+ A++ R LP + + Y+ K S PS+ LRFLNKAC + ++DL DG
Sbjct: 253 AQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDG 312
Query: 300 RASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPN--F 357
A N LCT +QVE+LKAL+KVIP+WSTGIM+++ +SQ+SF +LQA SMDR ++ N F
Sbjct: 313 LALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTF 372
Query: 358 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAW 417
+IP+GSF +F I+ L W+ LYDRA+LPLASKI+G+P ++++K+RMG+GL S +M
Sbjct: 373 QIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVS 432
Query: 418 AIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 477
A VE RR AI++G+++D + V +SAMW +P VL GLA A IGQTEF+YTE PKS
Sbjct: 433 ATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKS 492
Query: 478 MXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALS 537
M I+NAV + +K+G N WI NINKGHYDYYYW+L LS
Sbjct: 493 MSSIAASLFGLGMAVANILASVILNAVKNSSKQG-NVSWIEDNINKGHYDYYYWVLAILS 551
Query: 538 MANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 571
N +YY+ C +YGP +V D +GM +E
Sbjct: 552 FVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKE 583
|
|
| TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 6.0e-99, Sum P(2) = 6.0e-99
Identities = 113/258 (43%), Positives = 155/258 (60%)
Query: 297 PDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIA-VTISQSSFLVLQASSMDRHV-T 354
P + NP LC V+QVE+LK+LI VIPIWSTGI+++ VT Q SF+VLQA +MDRH
Sbjct: 231 PTRNSRNPWKLCRVQQVEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFI 290
Query: 355 PNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASM 414
FEIP GS+ IF +++ +++GLYD ++PL S +P +L + +RM G + S +
Sbjct: 291 QGFEIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCI 350
Query: 415 TAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL 474
+A A E ARR A +E + ++SAMW LPY++L G+A A N I Q EF+Y+EL
Sbjct: 351 SALAATEYARRKTARDE-------SGTKLSAMWLLPYMILGGIAEALNTIAQNEFFYSEL 403
Query: 475 PKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLT 534
PK+M I+ VD T G WI NI++GH DYYYWLL
Sbjct: 404 PKTMSSVATTLSSLNMAAASLISSWIITIVDVTTY----GSWITENIDEGHLDYYYWLLV 459
Query: 535 ALSMANFLYYLACCKAYG 552
LS+ N LY++ C K+YG
Sbjct: 460 GLSLLNVLYFVWCKKSYG 477
|
|
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 190/564 (33%), Positives = 294/564 (52%)
Query: 8 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATN 67
+ K P GG R + FI+ NE ER+ ++G N ++YL + +++E A N+I IW+ TN
Sbjct: 48 VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106
Query: 68 FLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD-QLRNGCESAT 126
P+VGA ++D+YVGR++ I F F LLG++ + T P P +C+ Q C
Sbjct: 107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166
Query: 127 WSQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186
Q+ L FG +Q D+ KG + S+F+WYY+ +
Sbjct: 167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKG-VASFFNWYYMTFTVVL 225
Query: 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVA 246
I+ T +VYIQD + W +GF +P +M YV K S+ G+ QV+VA
Sbjct: 226 IITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVA 285
Query: 247 SFKNRRTKLPTQ--ATEEMYHHG-KGSM--RLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ K R+ KLP + T Y K S+ +L S R L+KA + E DLTP+G
Sbjct: 286 ARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLTPEGPP 343
Query: 302 SNPNSLCTVEQVEELKALIKVIPIWSTGIM-IAVTISQSSFLVLQASSMDRHVTPNFEIP 360
++ LC+V++VEE+K LI+++PIWS GI+ +A +Q +F V QA MDR++ P FEIP
Sbjct: 344 ADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIP 403
Query: 361 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 420
+GS ++ ++LT+ I++ YDR +P +I G ++L R+G G++F+ SM IV
Sbjct: 404 AGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIV 463
Query: 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMXX 480
E RR +IN G D + MS W P L+L GL AFN+IGQ EF+ ++ P+ M
Sbjct: 464 ERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRS 520
Query: 481 XXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 540
++ V + W+ N+N G DY+Y+L+ L + N
Sbjct: 521 IANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVN 580
Query: 541 FLYYLACCKAYGPFKGRVGTAFDD 564
+Y+ C + Y + +VG +D
Sbjct: 581 LVYFWYCARGY---RYKVGLPIED 601
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 193/559 (34%), Positives = 285/559 (50%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NK G + FI+ NE ER+A G N++ YL N A N + W+
Sbjct: 21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I F + GM LL + +PG KP C+ + C + S
Sbjct: 81 TPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA--DTCHPNS-S 137
Query: 129 QLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A +FGA+Q D+ D + K S+F+W+Y ++ +++
Sbjct: 138 QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENE-KIKKSSFFNWFYFSINVGALI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASF 248
A T +V+IQ N+GW GFGVP V M FY + S L + QV+VA+F
Sbjct: 197 AATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF 256
Query: 249 KNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 303
+ K+P T + + KGS +L+ ++NL+F +KA A + D DG N
Sbjct: 257 RKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA--AVESQSDSIKDGEV-N 313
Query: 304 PNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSG 362
P LC+V QVEELK++I ++P+W+TGI+ A SQ S+ VLQ ++MD+H+ NFEIPS
Sbjct: 314 PWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSA 373
Query: 363 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 422
S ++F +++ W +YD+ ++PLA K + RMGIGL+ S +M ++E
Sbjct: 374 SLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEV 433
Query: 423 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXX 482
R D + + MS WQ+P +L G A F IGQ EF+Y + P +M
Sbjct: 434 VRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLC 491
Query: 483 XXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 542
++ V ITK+ G GWIP N+N+GH DY+++LL LS NFL
Sbjct: 492 SALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFL 551
Query: 543 YYLACCKAYGPFKGRVGTA 561
YL K Y +K VG A
Sbjct: 552 VYLWISKRY-KYKKAVGRA 569
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 181/565 (32%), Positives = 297/565 (52%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ VG + N+++YL +NM++ A ++ I+ +NF IV A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC-DQLRNGCESATWSQLMPL 133
L DSY GRY+ + F C LG V + T ++ P C ++ + C + Q+M L
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141
Query: 134 YFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
A FGA+Q D +G ++S+F+WY+ + + +V++T I
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRG-IESFFNWYFFTFTFAQMVSLTLI 200
Query: 194 VYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PA++M YVK KA+ S + +T+V+V + K RR
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260
Query: 254 KLPTQATEEMYHHGKGSMR---LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K P E+Y++ + L +E RFL+K+ + ++ L DG + LC++
Sbjct: 261 K-PV-GPNELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDK-LNKDGSPVDAWKLCSM 317
Query: 311 EQVEELKALIKVIPIW-STGIMIAVTISQSSFLVLQASSMDRHVTP-NFEIPSGSFNIFA 368
+QVEE+K +I+V+P+W S + I Q+++ + Q+ DR + P +F+IP+GS+ +F
Sbjct: 318 QQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFL 377
Query: 369 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 428
+L +TI+I +YDR ++P K G+ ++ R+G GL SM AIVE RR +A
Sbjct: 378 MLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVA 437
Query: 429 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXX 485
+ + G++ A+ MS MW +P LVL G+A A +GQ EFYY + P++M
Sbjct: 438 LTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSL 497
Query: 486 XXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 545
+++AV D T+ G W+P ++NKG +Y+Y+L+ + N Y+L
Sbjct: 498 YYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFL 557
Query: 546 ACCKAYGPFKGRVGTAFD-DKDGME 569
Y +K V D DK E
Sbjct: 558 LVSHWYR-YKDVVAKDKDMDKTSAE 581
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 187/567 (32%), Positives = 297/567 (52%)
Query: 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPI 71
PKGGL T+PFI ANE E++A VGF NMI YL + ++ T A N + + ++ P+
Sbjct: 23 PKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPL 82
Query: 72 VGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLM 131
+GA +ADS+ GR+ I F +GM LL + I+P +PP C C A +QL
Sbjct: 83 LGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKG-EEVCVVADTAQLS 141
Query: 132 PLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191
LY A AFGA+Q D+ D ++ +YF+WYY + A+ ++AVT
Sbjct: 142 ILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTW-NYFNWYYFCMGAAVLLAVT 200
Query: 192 CIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNR 251
+V+IQDN+GW +G G+P V M Y S L QV VA+F+ R
Sbjct: 201 VLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKR 260
Query: 252 RTKLPTQATEEMYHH---GKGSM--RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+ ++ + + ++ S+ +L ++++ FL+KA + E +L P G+ N
Sbjct: 261 KLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE-EDNLKP-GQIPNHWR 318
Query: 307 LCTVEQVEELKALIKVIPIWSTGIMIAVTISQS-SFLVLQASSMDRHVTPNFEIPSGSFN 365
L TV +VEELK++I++ PI ++GI++ +Q +F + QA +M+RH+T +F+IP+GS +
Sbjct: 319 LSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMS 378
Query: 366 IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARR 425
+F + + I YDR + +A K G ++ RMGIG + S + VE R+
Sbjct: 379 VFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRK 438
Query: 426 SIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXX 485
S+AI G+ D +V +S +W +P L G+A AF IG EF+Y + P+SM
Sbjct: 439 SVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATAL 498
Query: 486 XXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLYY 544
++ V + + W+P +N+N+G +Y+YWL+T L N +YY
Sbjct: 499 FWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYY 558
Query: 545 LACCKAYGPFKGRVGTAFDDKDGMEEE 571
L C K Y +V + +D ++EE
Sbjct: 559 LWCAKIYTYKPVQVHHSKEDSSPVKEE 585
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 190/561 (33%), Positives = 284/561 (50%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NKN G + FI+ E ER+A G + N+I YL ++ NME +A+ + W+
Sbjct: 22 NKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYA 81
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I + GM LL + +PG P + C AT
Sbjct: 82 TPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGET---CH-ATAG 137
Query: 129 QLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A +FGA+Q D D K K + S+F+W+Y ++ +++
Sbjct: 138 QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTD-EKEKESKSSFFNWFYFVINVGAMI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASF 248
A + +V+IQ N+GW G GVP V M FY K S L + QV+VAS
Sbjct: 197 ASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASC 256
Query: 249 KNRRTKLPTQATEEMYHHGK-------GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ + K+P E + + + GS +L ++ L F +KA A E D ++
Sbjct: 257 RKSKVKIPED--ESLLYENQDAESSIIGSRKLEHTKILTFFDKA--AVETESDNKGAAKS 312
Query: 302 SNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIP 360
S+ LCTV QVEELKALI+++PIW+TGI+ A SQ + VLQ +++D+H+ PNF+IP
Sbjct: 313 SSWK-LCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIP 371
Query: 361 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 420
S S ++F L++ W +YD+ ++P A K G + R+GIGL+ S SM + I+
Sbjct: 372 SASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGIL 431
Query: 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMXX 480
E AR + + ++ + M+ WQ+P L G A F IGQ EF+Y + P +M
Sbjct: 432 EVARLNYVQTHNLYNE--ETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRS 489
Query: 481 XXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 540
++ V +T+ GG GWI N+N GH DY++WLL LS N
Sbjct: 490 LCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLN 549
Query: 541 FLYYLACCKAYGPFKGRVGTA 561
FL YL K Y +K G A
Sbjct: 550 FLVYLWIAKWY-TYKKTTGHA 569
|
|
| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 171/551 (31%), Positives = 287/551 (52%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF V A
Sbjct: 46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPL 133
L D+Y GRY+ + C LG ++ T +P P AC + C + Q+ L
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165
Query: 134 YFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
AFGA+Q + + +G + S+F+WY+ + + I+++T +
Sbjct: 166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLV 224
Query: 194 VYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PAV+M YVK KA+ S L G+ QV+ + K R
Sbjct: 225 VYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGL 284
Query: 254 KLPTQATEEMYHHGK---GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K Q +Y++ + +L ++ RFL+KA + PE L PDG+ ++P LCT+
Sbjct: 285 KPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTM 343
Query: 311 EQVEELKALIKVIPIWSTGIMIAVTISQS-SFLVLQASSMDRHV-TPNFEIPSGSFNIFA 368
+QVEE+K +++V+PIW + +TI+Q ++ V QA DR + + F IP+ ++ +F
Sbjct: 344 QQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFL 403
Query: 369 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 428
+ +T++I +YDR ++P +I G ++L R+G G+ F+TAS+ VE RR+ A
Sbjct: 404 MTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFA 463
Query: 429 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXX 485
+ + G++ + MSAMW +P L L+G+A AF IGQ EFYY + P++M
Sbjct: 464 LTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSI 523
Query: 486 XXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 545
++ V T+ G W+ ++NKG D +Y+++ + NF Y+L
Sbjct: 524 FYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFL 583
Query: 546 ACCKAYGPFKG 556
+ Y +KG
Sbjct: 584 VMSRWYR-YKG 593
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 188/549 (34%), Positives = 272/549 (49%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
+K G + PFI+ NE ER+A G N+I Y E + +A + + IW
Sbjct: 49 SKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYI 108
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATW 127
P++GA++ADSY GRY I +GM LL + LP KP AC + C AT
Sbjct: 109 TPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATT 168
Query: 128 SQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
Q + +FGA+Q D D + + S+F+W+Y ++ S
Sbjct: 169 VQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTD-PRERVRKASFFNWFYFSINIGSF 227
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVAS 247
++ T +V++Q+N+GW +GF +P V M P Y K S + + QVLVA+
Sbjct: 228 ISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAA 287
Query: 248 FKNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRAS 302
++ + LP T E GS ++ ++ +FL+KA + E + G S
Sbjct: 288 YRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYE---SKSGAFS 344
Query: 303 NPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPS 361
NP LCTV QVEE+K LI++ PIW++GI+ +V SQ S+ V Q SM+R + +FEIP
Sbjct: 345 NPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR-IIRSFEIPP 403
Query: 362 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 421
SF +F L + I I +YDR ++P + G P L+ RMGIGL S S+ A AIVE
Sbjct: 404 ASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVE 463
Query: 422 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMXXX 481
R +A D V MS WQ+P +L G+A F IG+ EF+Y E P +M
Sbjct: 464 TVRLQLA------QDF---VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSV 514
Query: 482 XXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 541
I+ V T GG GW+P ++NKGH DY++WLL +L + N
Sbjct: 515 CSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVNI 574
Query: 542 -LYYLACCK 549
+Y L C K
Sbjct: 575 PVYALICVK 583
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M817 | PTR6_ARATH | No assigned EC number | 0.5228 | 0.9825 | 0.9258 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 572 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 7e-52 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 1e-22 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 5e-12 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 6e-08 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 7e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-04 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 6e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 7e-52
Identities = 120/409 (29%), Positives = 187/409 (45%), Gaps = 41/409 (10%)
Query: 84 YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLG 143
++ I G +G VLL I P P Q+ Y L++LG
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSP---------------VQVALFYIGLYLIALG 45
Query: 144 SGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK 203
+GGI+ + AFGA+Q D+ +FSW+Y ++A S++A Y+Q N+G+
Sbjct: 46 TGGIKPNVSAFGADQFDETQ----DPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 204 VGFGVPAVIMLLSALSFFLASPFYVK--SKANTSLLPGLTQVLVASFKNRRTKLPTQATE 261
+GFG+PAV MLL+ L F L S Y K + + ++ A+ KNR+ +LP +
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161
Query: 262 EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK 321
+ K + R + S+ A + P + V L+A++
Sbjct: 162 LYWALEKYNKRSI-SQTKVHTRVAVIFI-------PLPKFWALF--DQQGSVWLLQAILL 211
Query: 322 VIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYD 380
++PIW+ I+ +Q ++ +V Q +MDR + P FEIP SF F L + I + + D
Sbjct: 212 MLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILD 271
Query: 381 RAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 440
V PL + K L+L R G+G+ + AIVEA R A G++
Sbjct: 272 FLVYPLL---RLKR-GLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGW-T 326
Query: 441 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 489
V + +W LP L +SG+ +A G EF LP SM S+ + LS A
Sbjct: 327 VPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 97/501 (19%), Positives = 163/501 (32%), Gaps = 89/501 (17%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY----NMETTAATNIIFIWTAATNFLPIV 72
R L I E +ER + G +ILYL + + T AT + + + PI+
Sbjct: 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80
Query: 73 GALLADSYVGRYRMIGFGCFTCLLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLM 131
G LAD +G R I G +G ++L S+ PG
Sbjct: 81 GGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG--------------------- 119
Query: 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191
LY L+ +G+G + + + E K D + G F+ +Y+ ++ S++A
Sbjct: 120 -LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-----FTLFYMGINIGSLIAPI 173
Query: 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYV--------KSKANTSLLPGLTQV 243
+ N GW VGFG+ AV M++ + F L + LLP L +
Sbjct: 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGL 233
Query: 244 LVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 303
+V T L Q + R S
Sbjct: 234 VVMILAALLTLLLNQ------------------NTFSGVLLVISILIAIIYFAEAFR-SP 274
Query: 304 PNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSG 362
+E + L+ IP++ ++ Q S L L A FE+P
Sbjct: 275 KVF-------DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPA 327
Query: 363 ---SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAI 419
S N F I+ ++ + L K Q S ++ +GL+ + + I
Sbjct: 328 WFQSLNPFFII---LFSPILAALWTKLGRGNK----QPSTPIKFALGLILAGLG---FLI 377
Query: 420 VEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 479
+ A G+ +S W + VL F P ++
Sbjct: 378 LLLAGIWFGGPSGL---------VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALK 428
Query: 480 SIASTLSGAGLSAANLVASLI 500
S + ++A + +
Sbjct: 429 SFIMAMWFLTVAAGQTLGGQV 449
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 81/393 (20%), Positives = 154/393 (39%), Gaps = 73/393 (18%)
Query: 40 MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99
++LYL ATNI +T P++GAL+ADS++G+++ I + ++G
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQL 159
L S +P P + L L++LG+GGI+ AFG +Q
Sbjct: 70 LA-SLGAVPSLGHP-------------LHDALSLVGLA-LIALGTGGIKPCVSAFGGDQF 114
Query: 160 DKGDGTKSKGALQSYFSWYYVFVSASSIVAVT-------CIVYIQDNLGWKVGFGVPAVI 212
++ +FS++Y ++A S+ + + + + FGVP ++
Sbjct: 115 EER----QLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGIL 170
Query: 213 MLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMR 272
M L+ + F + S Y K +++ + + +V + K R +
Sbjct: 171 MTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR---------------FRTRSE 215
Query: 273 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKV----IPIWST 328
P + +L+ A K+ + + K L++V IP+
Sbjct: 216 DWPRLH--WLDWA-APKYLIRM------------------IRSTKRLLRVLFLFIPLP-- 252
Query: 329 GIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLAS 388
+ A+ Q S LQA+ MD V F I L + I + ++D V P +
Sbjct: 253 -MFWALFDQQGSRWTLQATRMDGDVG-LFPIQPDQMQAVNPLLVLILVPIFDYVVYPALA 310
Query: 389 KIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 421
K + + +M +G+L + + A+++
Sbjct: 311 KCG---TRFTSLRKMAVGMLLAALAFAVAALLQ 340
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 32/212 (15%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNM--ETTAATNIIFIWTAATNFLPIV 72
L TL F+ E +ER + G + +YL ++ + A I ++A L V
Sbjct: 11 PLFTLFFV---ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSV 67
Query: 73 GALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMP 132
G D G + + G +LG +L A D +
Sbjct: 68 GWWFGDRVWGTKKTMVLGGIVLMLGHFML--------AMSIYPDLI-------------- 105
Query: 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192
++ G +++GSG +++ + + ++GD + G F+ +Y+ ++ S ++
Sbjct: 106 -FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG----FTLFYMSINIGSFISPLL 160
Query: 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224
I +N G+ VGF + AV M++ L+FF
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 7e-07
Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 35/237 (14%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALL 76
R + +++A + +E + G +ILYL + + A + + + PI+G L
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 77 ADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFA 136
AD +G + G +G V+L ++ I P LY +
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF----------------------LYLS 106
Query: 137 FGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196
++ G G +S+ E + D + G FS Y + SI+A Y
Sbjct: 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG-----FSLMYAAGNVGSIIAPIACGYA 161
Query: 197 QDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK--------ANTSLLPGLTQVLV 245
Q+ W +GFG+ AV M+ + F + + ++ A LLP +LV
Sbjct: 162 QEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV 218
|
Length = 493 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 32/196 (16%)
Query: 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86
+ +P + L + + + A I+ ++ ++ L+D + GR R+
Sbjct: 9 FLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRV 66
Query: 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGG 146
+ G LG +LL + L L L+ LG G
Sbjct: 67 LLLGLLLFALGSLLLAFASSLWL-----------------------LLVGRFLLGLGGGA 103
Query: 147 IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF 206
+ ++ A AE + +++ + ++LGW+ F
Sbjct: 104 LYPAAAALIAEWF-------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 207 GVPAVIMLLSALSFFL 222
+ A++ LL AL
Sbjct: 157 LILAILGLLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 36/219 (16%), Positives = 67/219 (30%), Gaps = 31/219 (14%)
Query: 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90
+ P + LYL + + T ++ ++ + L+D + GR R++ G
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSS 150
LG++LL S L L L LG G + +
Sbjct: 69 LLLFALGLLLL-----------------------LFASSLWLLLVLRVLQGLGGGALFPA 105
Query: 151 SLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 210
+ A A+ + + + + GW+ F + A
Sbjct: 106 AAALIADWFPPEE-------RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILA 158
Query: 211 VIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249
++ LL+A+ L P LV ++K
Sbjct: 159 ILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 29/202 (14%)
Query: 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV 81
I + E +ER G M +YL ++ M + + ++A L +G L D +
Sbjct: 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVL 85
Query: 82 GRYRMIGFGCFTCLLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLM 140
G R+I G +G L+ WS A +Y +
Sbjct: 86 GTKRVIMLGAIVLAIGYALVAWSG------------------HDAGI-----VYMGMATI 122
Query: 141 SLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL 200
++G+G +++ + + +K D + GA F+ YY+ ++ S ++ ++
Sbjct: 123 AVGNGLFKANPSSLLSTCYEKDD-PRLDGA----FTMYYMSINIGSFFSMLATPWLAAKY 177
Query: 201 GWKVGFGVPAVIMLLSALSFFL 222
GW V F + V ML++ ++F
Sbjct: 178 GWSVAFALSVVGMLITVVNFAF 199
|
Length = 500 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.92 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.91 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.9 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.9 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.9 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.9 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.88 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.88 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.87 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.87 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.87 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.86 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.85 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.85 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.85 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.85 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.84 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.83 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.82 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.82 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.82 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.82 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.82 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.81 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.81 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.81 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.79 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.77 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.73 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.72 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.72 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.71 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.71 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.7 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.69 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.69 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.68 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.68 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.68 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.68 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.66 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.64 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.62 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.62 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.61 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.6 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.6 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.59 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.58 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.49 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.49 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.48 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.44 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.37 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.36 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.34 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.34 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.33 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.33 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.32 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.32 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.32 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.32 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.31 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.31 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.3 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.28 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.27 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.26 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.26 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.25 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.24 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.23 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.23 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.23 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.22 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.22 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.21 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.21 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.21 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.17 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.17 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.16 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.16 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.15 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.15 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.15 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.14 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.14 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.14 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.12 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.12 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.11 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.1 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.07 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.07 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.06 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.05 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.04 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.04 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.03 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.03 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.03 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.03 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.01 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.01 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.99 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.99 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.98 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.98 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.98 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.93 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.91 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.9 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.9 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.89 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.89 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.88 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.88 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.87 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.86 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.85 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.85 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.82 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.77 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.77 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.76 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.76 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.69 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.66 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.63 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.63 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.61 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.59 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.58 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.52 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.46 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.45 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.44 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.4 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.4 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.38 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.36 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.36 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.36 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.35 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.33 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.32 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.29 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.25 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.23 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.23 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.21 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.09 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.08 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.07 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.03 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.0 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.99 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.93 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.87 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.87 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.81 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.78 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.73 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.72 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.71 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.7 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.66 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.62 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.56 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.5 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.44 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.33 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.24 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.1 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.05 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.83 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.73 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.54 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.43 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.39 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.28 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.92 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.75 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.58 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.13 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 94.87 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 94.73 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.26 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.84 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 92.84 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 92.4 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.18 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 91.11 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 89.63 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.73 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 86.09 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 83.37 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 81.78 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=411.63 Aligned_cols=532 Identities=39% Similarity=0.702 Sum_probs=474.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHH
Q 008264 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (572)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~ 91 (572)
+++.|+...+++..+.+|++++|++..++..|++.+++.+...+.-..+.+.......++++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccc---cCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccc
Q 008264 92 FTCLLGMVLLWSTTILPGAKPPACDQL---RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (572)
Q Consensus 92 ~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (572)
++..+|.+++..+...+.+.+|.| .+ .+.|...+..+...++.+.-+.++|.|+.+|+..++.+|++++.++.++
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~- 189 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV- 189 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-
Confidence 999999999999998999999887 33 3346667777888899999999999999999999999999996555443
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHH
Q 008264 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASF 248 (572)
Q Consensus 169 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (572)
+.+.+.++|+|+..+.|..++-.+..|++++.+|.+.|.++.++..+++++++...+.|+..+|.++|+..+.+++..+.
T Consensus 190 ~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~ 269 (571)
T KOG1237|consen 190 KGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAA 269 (571)
T ss_pred hCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHH
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008264 249 KNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWST 328 (572)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (572)
+++....+. +++......++.+....++.+.++|++.+..+.+. .++....+|+.|+.+++|+.|..++.++++..
T Consensus 270 ~k~~~~~~~-~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~ 345 (571)
T KOG1237|consen 270 FKRKAVVSL-DPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLT 345 (571)
T ss_pred HHHhccCCC-cchhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHH
Confidence 998887765 43333112222234445677899999988765443 45556678999999999999999999999999
Q ss_pred HHHHHHhhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHH
Q 008264 329 GIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGL 407 (572)
Q Consensus 329 ~~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~ 407 (572)
.+.++..+.| .++.+.|+..|++..++++++|++.++.+..+.+.+..|++++...|+.+|+++++++++++.++.+|+
T Consensus 346 ~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~ 425 (571)
T KOG1237|consen 346 TIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGL 425 (571)
T ss_pred HHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccc
Confidence 9999999999 888899999999999866999999999999999999999999999999999999887899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHH
Q 008264 408 LFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG 487 (572)
Q Consensus 408 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 487 (572)
.+..+++...+..+.++++.+.. +.....++|.+|++++|+++|++|++..++..|+.++++|++||+.+++++.
T Consensus 426 ~~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l 500 (571)
T KOG1237|consen 426 VLSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWL 500 (571)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHH
Confidence 99999999999999998887654 1122357899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 008264 488 AGLSAANLVASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG 556 (572)
Q Consensus 488 ~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~~~ 556 (572)
+...+|+.++..++.++...+++ ..+|++ +++|.+..+.+||+++....+....+..+.++++.++.
T Consensus 501 ~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~ 568 (571)
T KOG1237|consen 501 LTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD 568 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence 99999999999999998876654 458999 89999999999999999999999999888888765544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=348.40 Aligned_cols=462 Identities=18% Similarity=0.228 Sum_probs=352.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhh
Q 008264 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN----METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI 87 (572)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~ 87 (572)
.-+|||.+..++..|++||++|||+.+.+..|++.+++ ++++++.-+.+.|....+..+++|||+|||++|+||++
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 34589999999999999999999999999999999888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccc
Q 008264 88 GFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKS 167 (572)
Q Consensus 88 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 167 (572)
..|.+++++|.++++.+. ......++++.++.++|.|+++|+..++++|++|++|+
T Consensus 96 ~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp--- 151 (498)
T COG3104 96 VLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP--- 151 (498)
T ss_pred HHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc---
Confidence 999999999999998652 01456689999999999999999999999999999995
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCC--Cch------h
Q 008264 168 KGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTS--LLP------G 239 (572)
Q Consensus 168 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~ 239 (572)
+|..+++++|.+.|+|+.++|++.+++.+++||+..|.++++.+.++++.++++++........++ +.. .
T Consensus 152 --rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
T COG3104 152 --RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPV 229 (498)
T ss_pred --ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhh
Confidence 389999999999999999999999999999999999999999999999999888876644332211 110 0
Q ss_pred HHHHHHHHHhhcccCCCCcccchhcccCCCccccCCCchhhhh-hhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHH
Q 008264 240 LTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFL-NKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKA 318 (572)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (572)
...........- . .+.+.. +..++. ....+.. +........+ .++.. +++|+
T Consensus 230 ~~~~~~~~~~~~-~-------~~~l~~----------~~~~~~~~~~~i~~-------~~~~~~~~~~-~~~~~-~er~r 282 (498)
T COG3104 230 LGGLVVMILAAL-L-------TLLLNQ----------NTFSGVLLVISILI-------AIIYFAEAFR-SPKVF-DERRR 282 (498)
T ss_pred HHHHHHHHHHHH-H-------HHHHHH----------HHHHHHHHHHHHHH-------HHHHHHHHhc-cCccH-HHHHH
Confidence 011110000000 0 000000 000000 0000000 0000000000 11223 77888
Q ss_pred HHHHHHHHHHHHHHHHhhcc--chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCC
Q 008264 319 LIKVIPIWSTGIMIAVTISQ--SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 396 (572)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~q--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~ 396 (572)
.+..+++++..++||+.+.| +++..+.....+++.. ++++|++++|++|++.++++.|+.+.+.+++.++. ++
T Consensus 283 ~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ 357 (498)
T COG3104 283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQ 357 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CC
Confidence 88999999999999999999 6665666667777743 59999999999999999999999999887766652 33
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCCh
Q 008264 397 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476 (572)
Q Consensus 397 ~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 476 (572)
++...++..|+.+++.+++.+....... + ++....|.+|+++.++++++||.+.+|...+++++.+|+
T Consensus 358 ps~~~KFalGl~l~g~~fl~l~~~~~~~-------~-----~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~ 425 (498)
T COG3104 358 PSTPIKFALGLILAGLGFLILLLAGIWF-------G-----GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP 425 (498)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhh-------c-----CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH
Confidence 8899999999999999998887664210 1 112347999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008264 477 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 553 (572)
Q Consensus 477 ~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~ 553 (572)
++.+..+|.+.+....++.++..+.+.... ++ +..+......+|+.++...++..+......++.++
T Consensus 426 ~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 426 ALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999887653110 00 00111234557888888888877777777665543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=337.59 Aligned_cols=461 Identities=12% Similarity=0.176 Sum_probs=326.9
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
++|||.++.++..+++||+++|++.++++.|+++++|++.++++++.+.+....++.++++|+++||++||||++..+.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999994499999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
++.+++++++++.+ ....++++|+++|+|.|...|+..++++|++|+++ ++|+
T Consensus 90 ~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~-----~~~~ 142 (489)
T PRK10207 90 VLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD-----PRLD 142 (489)
T ss_pred HHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc-----hhhh
Confidence 99999999987651 12335688999999999999999999999999865 3468
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceecc--CCCCCCchhHHHHHHH----
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS--KANTSLLPGLTQVLVA---- 246 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---- 246 (572)
++++++|++.|+|..+||.+++++.+++|||+.|++.++..+++++.+...++.+++. ++++++ .|..+.+..
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~ 221 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKP-MSFSKLLLVLLGS 221 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccc-hhhhhHHHHHHHH
Confidence 8999999999999999999999999999999999998776666666665555444332 222211 121111100
Q ss_pred ---HHh-hcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 008264 247 ---SFK-NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKV 322 (572)
Q Consensus 247 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (572)
... ....+... ......... ... ....++.... +.+..+ +++.+..
T Consensus 222 ~~~~~~~~~~~~~~~-~~~~~~~~~----~~i--~~~~f~~~~~----------------------~~~~~~-r~r~~~~ 271 (489)
T PRK10207 222 VVMIFVCAWLMHNVE-VANLVLIVL----SIV--VTIIFFREAF----------------------KLDKTG-RNKMFVA 271 (489)
T ss_pred HHHHHHHHHHHhhhh-HHHHHHHHH----HHH--HHHHHHHHHh----------------------cCCHHH-HHHHHHH
Confidence 000 00000000 000000000 000 0000000000 001122 3344455
Q ss_pred HHHHHHHHHHHHhhcc--chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCch
Q 008264 323 IPIWSTGIMIAVTISQ--SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLK 400 (572)
Q Consensus 323 ~~~~~~~~~~~~~~~q--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~ 400 (572)
..++....++|..+.| .++..+....+++... ++.+++..++++|++.+++..|+.+++ .+|+++|+.++++.
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~~~~~~~ 346 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGI----YTHLGSKGKDLSMP 346 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCCCCCCcH
Confidence 5666678888998888 4443444434555554 788999999999999999999986554 45555554447888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHH
Q 008264 401 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 480 (572)
Q Consensus 401 ~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 480 (572)
.++.+|+++.+++++.+...... ..+.+ ...+.+|+++.+++.++||.+.+|+.++++++.+|++++|
T Consensus 347 ~k~~~G~~l~~~~~~~~~~~~~~---------~~~~~---~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g 414 (489)
T PRK10207 347 MKFTLGMFLCSLGFLTAAAAGMW---------FADAQ---GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMG 414 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------hcCCC---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHH
Confidence 99999999999998766543210 00000 1357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008264 481 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 554 (572)
Q Consensus 481 ~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~ 554 (572)
.++|++++..++|+.++..+...+.... + ..-+. ...+.+.++|..+++.+++..++.+++.++.++.
T Consensus 415 ~~~g~~~l~~~ig~~lg~~l~~~~~~~~--~---~~~~~-~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 415 FILGMWFLTQAAAFLLGGYVATFTAVPD--N---ITDPL-ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc--c---cccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876543100 0 00000 0012356778888888888777777776665543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=330.97 Aligned_cols=453 Identities=15% Similarity=0.176 Sum_probs=330.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHH
Q 008264 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE--YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGF 89 (572)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~ 89 (572)
..+|+|.++.+++.+++||+++|++.++++.|++++ +|+++.+++++.+.+.++..++++++|+++||++||||++.+
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 356889999999999999999999999999999987 999999999999999999999999999999994499999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccccc
Q 008264 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (572)
Q Consensus 90 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (572)
+.++.+++.+++++++ +...++++|++.|+|.|+..|+..++++|++|+++. +
T Consensus 85 ~~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~ 137 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSI-----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----P 137 (475)
T ss_pred HHHHHHHHHHHHHhcc-----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----c
Confidence 9999999998888755 456688899999999999999999999999998654 3
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhH-----HH--
Q 008264 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGL-----TQ-- 242 (572)
Q Consensus 170 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-- 242 (572)
+|+++++++|++.|+|..+||.+++++.+++||++.|.+.++..+++++.++..++.+++.++++++..+. .+
T Consensus 138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLL 217 (475)
T ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHH
Confidence 38889999999999999999999999999889999999988777766666655554443222221111100 00
Q ss_pred ----HHHHHHhhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHH
Q 008264 243 ----VLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKA 318 (572)
Q Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (572)
.+....+........ ..... .+.......+........+ + +.++ .++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~-------------~----~~~~-~~~~~ 270 (475)
T TIGR00924 218 ALLAALALVFFCAWLMHHV-VIANI--------LLMTVTLAVIIFFFRLAFK-------------P----RLDA-VARNK 270 (475)
T ss_pred HHHHHHHHHHHHHHHHhcc-HHHHH--------HHHHHHHHHHHHHHHHHHh-------------c----cCCH-HHHhH
Confidence 000000000000000 00000 0000000000000000000 0 0112 22334
Q ss_pred HHHHHHHHHHHHHHHHhhcc--chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCC
Q 008264 319 LIKVIPIWSTGIMIAVTISQ--SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 396 (572)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~q--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~ 396 (572)
....+++++...++|+.+.| +++.+++...++...+ ++++|+++++++|++.+++..|+.+.+ ..|+.+|.++
T Consensus 271 ~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~~~~ 345 (475)
T TIGR00924 271 MYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRKGKD 345 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhCCCC
Confidence 44678888888999999999 5566777777777765 788999999999999999999987654 3444444333
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCCh
Q 008264 397 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476 (572)
Q Consensus 397 ~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 476 (572)
++...++.+|+++.+++++.+++.... . +.....+++|+++++++.++||.+..|..++++++.+|+
T Consensus 346 ~~~~~k~~~G~~l~~~~~~~~~~~~~~----~---------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~ 412 (475)
T TIGR00924 346 PTTPLKFTLGMLFCGASFLTFAASIWF----A---------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ 412 (475)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhh----c---------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 666778999999999998888765311 0 001246999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008264 477 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 552 (572)
Q Consensus 477 ~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~ 552 (572)
++||+++|++.+...+|+.+++.+.+..... .++..+|...+++.++..++.+...++.+
T Consensus 413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVP----------------QGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887664321 12345677777777777776666666543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=324.28 Aligned_cols=463 Identities=17% Similarity=0.198 Sum_probs=329.6
Q ss_pred CCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHH
Q 008264 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (572)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 93 (572)
+|+|.++.++..+++|++++|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 94 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
..++.++++...+ +...++++..+.++|.|...++.+++++|++|+++ ++|.+
T Consensus 86 ~~lg~lll~~~~~----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~-----~~R~s 138 (493)
T PRK15462 86 MAIGHVVLGASEI----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD-----PRRDG 138 (493)
T ss_pred HHHHHHHHHHhhc----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC-----ccccc
Confidence 9999877764320 12234555666778889899999999999999865 34899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCC-CCCCch--hHHH----H-HH
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA-NTSLLP--GLTQ----V-LV 245 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~----~-~~ 245 (572)
+++++|...|+|+.++|.+.+++.+.+||++.|.++++.++++++.++..++.+.+... +.++.. +... . ..
T Consensus 139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (493)
T PRK15462 139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV 218 (493)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Confidence 99999999999999999999999988999999999888777777777666655433211 111111 1000 0 00
Q ss_pred HH-----HhhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 008264 246 AS-----FKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALI 320 (572)
Q Consensus 246 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (572)
.. +....... . ........ ..--...++-. .... ....+++|++.
T Consensus 219 ~~~~~~~~~~~~~~~-~-~~~~~~~~-------~~~~~~~~~~~--~~~~-------------------~~~~~er~r~~ 268 (493)
T PRK15462 219 LLVATPALITVLFWK-E-WSVYALIV-------ATIIGLGVLAK--IYRK-------------------AENQKQRKELG 268 (493)
T ss_pred HHHHHHHHHHHHHHH-H-HHHHHHHH-------HHHHHHHHHHH--HHHh-------------------cCCHHHHhhHH
Confidence 00 00000000 0 00000000 00000000000 0000 01235677888
Q ss_pred HHHHHHHHHHHHHHhhcc--chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCC
Q 008264 321 KVIPIWSTGIMIAVTISQ--SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLS 398 (572)
Q Consensus 321 ~~~~~~~~~~~~~~~~~q--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~ 398 (572)
..+.++...++||..|.| +++.++...++|++++ +|++|+.++|++|++.++++.|+...+. .|+.+|+++++
T Consensus 269 ~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw----~~l~~~~~~~s 343 (493)
T PRK15462 269 LIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVV----KESVAGNRTVR 343 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHH----HHHhcCCCCCC
Confidence 888999999999999999 6676777888999876 8999999999999999999999977654 44433333488
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhh
Q 008264 399 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 478 (572)
Q Consensus 399 ~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 478 (572)
...|+.+|+++++++++.+...... . +++ ..+|.+|++..++++++||.+.+|...+.+.+.+|++.
T Consensus 344 ~~~Kfa~g~~~~g~~f~~l~~~~~~----~-------~~~--~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~ 410 (493)
T PRK15462 344 IWGKFALGLGLMSAGFCILTLSARW----S-------AMY--GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV 410 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh----c-------CCC--CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH
Confidence 8999999999999999888765411 0 000 13689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHH--HHHHHHhhhhccccC
Q 008264 479 SSIASTLSGAGL-SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN--FLYYLACCKAYGPFK 555 (572)
Q Consensus 479 rg~~~g~~~~~~-~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~--~~~~~~~~~~~~~~~ 555 (572)
||.+||++.+.. .+|+.++..+..........+. +-..+ ....+..+|..++...++. +++...+++..|-|+
T Consensus 411 ~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
T PRK15462 411 TGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAS--GAINY--SINAYIEVFDQITWGALACVGVVLMIWLYQALKFRN 486 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc--ccccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998854 7899888887665421100000 00000 1123566777777666655 333444444444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=316.26 Aligned_cols=465 Identities=14% Similarity=0.200 Sum_probs=326.5
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 008264 5 PLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY 84 (572)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr 84 (572)
|..+++.. .|+|.++.+++.+++|++++|++..+++.|+++++|+++++++++.+.+.......++++|+++||++|||
T Consensus 10 ~~~~~~~~-~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r 88 (500)
T PRK09584 10 ESVSLNAF-KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK 88 (500)
T ss_pred CCCChhhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 45555554 46788888999999999999999999999999999999999999998888888888889999999944999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCC
Q 008264 85 RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG 164 (572)
Q Consensus 85 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 164 (572)
+++..+.+++.+++.+++++.+ +...++++|+++|+|.|...|+..++++|++|+++
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~~----------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~- 145 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSGH----------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD- 145 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-
Confidence 9999999999999988887531 34557788999999999999999999999998755
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceecc--CCCCCCch--hH
Q 008264 165 TKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS--KANTSLLP--GL 240 (572)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~ 240 (572)
++|.++++++|++.++|..+||.+++++.+++|||+.|++.++..+++++.++..++.+++. +++.++.. ..
T Consensus 146 ----~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (500)
T PRK09584 146 ----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKL 221 (500)
T ss_pred ----hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhH
Confidence 33567889999999999999999999999989999999998877676666554444333322 12211111 10
Q ss_pred ----HHHHHHHHhhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 008264 241 ----TQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEEL 316 (572)
Q Consensus 241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (572)
............. . .+.+ .........+....... ....+..+. .++
T Consensus 222 ~~~~~~~~~~~~~~~~~-~---------~~~~------~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~ 272 (500)
T PRK09584 222 LLTIVGVVALIAIATWL-L---------HNQE------IARMALGVVALGIVVIF------------GKEAFAMKG-AAR 272 (500)
T ss_pred HHHHHHHHHHHHHHHHH-H---------hcch------HHHHHHHHHHHHHHHHH------------HHHHhhcCH-HHH
Confidence 0011111100000 0 0000 00000000000000000 000000112 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-chhhhhhh-ccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCC
Q 008264 317 KALIKVIPIWSTGIMIAVTISQ-SSFLVLQA-SSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKP 394 (572)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~q-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~ 394 (572)
++.+..+.++...+.||+.+.| ++....+. ...+.... ++.+++++++++|++.+++..|+.+.. .+|+.+|
T Consensus 273 ~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r- 346 (500)
T PRK09584 273 RKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR- 346 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC-
Confidence 4555566677788899999999 55544443 33455553 788999999999999999999987664 4665555
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccC
Q 008264 395 CQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL 474 (572)
Q Consensus 395 ~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~ 474 (572)
+++.+++.+|+++.+++++.+.....+ .+ ....++.+|+++.+++.++||++..|...+++++.+
T Consensus 347 --~~~~~~~~~G~~l~~l~f~~l~~~~~~----------~~---~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a 411 (500)
T PRK09584 347 --LPMPHKFAIGMVLCSGAFLVLPLGAKF----------AN---DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLV 411 (500)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHHHh----------cC---CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 678899999999999999887765411 00 012367889999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008264 475 PKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN-INKGHYDYYYWLLTALSMANFLYYLACCKAYGP 553 (572)
Q Consensus 475 P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~ 553 (572)
|+++||+++|++.+...+|+.+++.+...+.... -..+. ...+.+...|..+++++++..++.+...++.++
T Consensus 412 P~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 412 PQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD-------NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888865432100 00000 011235677888887777766666666665554
Q ss_pred c
Q 008264 554 F 554 (572)
Q Consensus 554 ~ 554 (572)
.
T Consensus 485 ~ 485 (500)
T PRK09584 485 M 485 (500)
T ss_pred H
Confidence 3
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=270.68 Aligned_cols=335 Identities=22% Similarity=0.407 Sum_probs=274.0
Q ss_pred HHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCC
Q 008264 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (572)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~ 110 (572)
++|||+...+..|+++.+|++++++..+...+.....+.++++|+++|+++||++++.++.++..+|..+++++...+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998876521110
Q ss_pred CCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHh
Q 008264 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (572)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 190 (572)
. .......+++..+.++|.|+.+|+..++.+|+++++++ ++|.++++++|++.|+|+.+++
T Consensus 81 ~---------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 81 H---------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred c---------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11344577889999999999999999999999987554 4589999999999999999999
Q ss_pred hhhhheecc-------cccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcccchh
Q 008264 191 TCIVYIQDN-------LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEM 263 (572)
Q Consensus 191 ~~~~~l~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (572)
.+.+++.+. .+|..+|.+++++++++++++...++++++.++..++.....++++.+.+++....+.
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------ 215 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------ 215 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------
Confidence 999998743 3699999999999999999998888888776666666666777777666654322110
Q ss_pred cccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhh
Q 008264 264 YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFL 342 (572)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~~~ 342 (572)
....+|+|.+.... ..++++++|++++.+++++....+|..+.| .+.+
T Consensus 216 ------------~~~~~~ld~a~~~~-------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~ 264 (654)
T TIGR00926 216 ------------HWPLHWLDYAKDKH-------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRW 264 (654)
T ss_pred ------------ccchhHHHHhcccc-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 01134555543221 134578889999999999999999999999 7776
Q ss_pred hhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 008264 343 VLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 422 (572)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~ 422 (572)
..+...++..++ ++.+++.+++.+|++.++++.|+.+..+.|..+|.+.+ +++..++.+|+++.++++++++..+.
T Consensus 265 ~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~ 340 (654)
T TIGR00926 265 TLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQL 340 (654)
T ss_pred HHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877765 68899999999999999999999998888888775444 78899999999999999998888776
Q ss_pred HHH
Q 008264 423 ARR 425 (572)
Q Consensus 423 ~~~ 425 (572)
++.
T Consensus 341 ~~~ 343 (654)
T TIGR00926 341 KVN 343 (654)
T ss_pred HHh
Confidence 644
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=221.74 Aligned_cols=374 Identities=13% Similarity=0.020 Sum_probs=244.5
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
+|.+..+.+..++..++.....+.++.|+++++|.|+.+.+++.+.+.++..+++++.|+++||+ ||||++..+.+++.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 45566677788888888888889999999999999999999999999999999999999999998 99999999999888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.+.+.++..... ....+...+++.|+++|+|.+...++..+++.|.+|+ ++|+++.
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~ 150 (399)
T PRK05122 93 LSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-------LHTGRVI 150 (399)
T ss_pred HHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-------hhhccch
Confidence 88776655431110 0011456789999999999999999999999999988 4489999
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCC
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKL 255 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (572)
+++....++|..+|+.+++++.+.+||++.+++..+..++..+.. ++ .++.++++++..
T Consensus 151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~----------------- 209 (399)
T PRK05122 151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGERL----------------- 209 (399)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccch-----------------
Confidence 999999999999999999999888999998887655443332221 11 111110000000
Q ss_pred CCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHH
Q 008264 256 PTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKV-IPIWSTGIMIAV 334 (572)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 334 (572)
+ ..+..|..... .........+..
T Consensus 210 ------------------------~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 234 (399)
T PRK05122 210 ------------------------P-------------------------------FRRVLGRVWPYGMGLALASIGFGT 234 (399)
T ss_pred ------------------------h-------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001111110 011111111111
Q ss_pred hhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 008264 335 TISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTAS 413 (572)
Q Consensus 335 ~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~ 413 (572)
.... ..+ . ...+.. ..........+..++..++ ..++.+| .++++.+..+..+.+++
T Consensus 235 ~~~~~~~~-~-~~~~~~---------~~~~~~~~~~~~~~~~~~~----~g~l~~r-------~~~~~~~~~~~~~~~~~ 292 (399)
T PRK05122 235 IATFITLY-Y-AARGWD---------GAALALTLFGVAFVGARLL----FGNLINR-------LGGLRVAIVSLLVEILG 292 (399)
T ss_pred HHHHHHHH-H-HHcccc---------cchHHHHHHHHHHHHHHHH----HHHHHHH-------hccHHHHHHHHHHHHHH
Confidence 1111 111 1 111110 0111112222222222222 2223344 34446677777777776
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHH
Q 008264 414 MTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAA 493 (572)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig 493 (572)
........ +.+.+....++.|++.+...+.....+.+..|++.||+++|+++....+|
T Consensus 293 ~~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 350 (399)
T PRK05122 293 LLLLWLAP----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLS 350 (399)
T ss_pred HHHHHHhc----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 65554432 34445556678888888888877777778899999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008264 494 NLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 548 (572)
Q Consensus 494 ~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~ 548 (572)
..+++.+.+.+.+.. +++..|++.+++.+++.+..+.+.
T Consensus 351 ~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 351 LGITGPLAGLVASWF----------------GYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988877665322 256677777777777766655543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=222.12 Aligned_cols=174 Identities=11% Similarity=0.052 Sum_probs=145.4
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
|..++.+.+..++.....+...+.+ +.+.+++|+|+++.+++.+.+.++..++.++.|+++||+ ||||++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 4344444555555444444332333 456889999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.+.+.+++ +.+.+++.|+++|++.+...+...+++.|++|+ ++|++++
T Consensus 86 ~~~~~~~~~~-----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~ 135 (390)
T PRK03545 86 ASHVLSALAW-----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-------GKKAQAL 135 (390)
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------hhhhhHH
Confidence 9999988876 788899999999999999999999999999998 4489999
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
+++....++|..++|.+++.+.+.+|||+.|++.++..++..+...
T Consensus 136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI 181 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888999999998876665544433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=220.26 Aligned_cols=178 Identities=17% Similarity=0.088 Sum_probs=148.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHH
Q 008264 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (572)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~ 90 (572)
+.|.+|....+.....+++.+..+......+ .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~ 86 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVS 86 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHH
Confidence 3444455555555677777777666554444 55678999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccc
Q 008264 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (572)
Q Consensus 91 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (572)
.++..++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++
T Consensus 87 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~ 136 (406)
T PRK11551 87 VALFGLFSLATAQAW-----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RL 136 (406)
T ss_pred HHHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HH
Confidence 998888888777655 677889999999999999999999999999988 45
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008264 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 171 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
|+++.++++...++|..+++.+++.+.+..+||+.|++.++..++..+..
T Consensus 137 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 137 RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998888888899999998776555444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=220.86 Aligned_cols=346 Identities=13% Similarity=0.103 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHH
Q 008264 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (572)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~ 99 (572)
.+++...++..++++.+.++++.|+++++|+|+.+.|++.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5566788899999999999999999999999999999999999999999999999999998 999999999999999998
Q ss_pred HHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHH
Q 008264 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (572)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (572)
.+..++ +.+.+++.|+++|++.+...|+..+++.|.+|+ ++|+++.++.+
T Consensus 92 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIAH-----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLM 141 (400)
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Confidence 887755 677789999999999999999999999999987 44899999999
Q ss_pred HHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcc
Q 008264 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA 259 (572)
Q Consensus 180 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (572)
...++|..+||.+++++. .++||+.|++.++..++..+......|+.++ ++..++..
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~--------------------- 198 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR--------------------- 198 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH---------------------
Confidence 999999999999999988 6799999998877665554443333222100 00000000
Q ss_pred cchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 008264 260 TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ- 338 (572)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q- 338 (572)
+ .+. ...++ +.+...... ...++....+
T Consensus 199 -----------------~--~~~----------------------------~~~~~-~~~~~~~~~---~~~~~~~~~~~ 227 (400)
T PRK11646 199 -----------------E--GMT----------------------------RVLRD-KRFVTYVLT---LTGYYMLAVQV 227 (400)
T ss_pred -----------------H--HHH----------------------------HHHcC-chHHHHHHH---HHHHHHHHHHH
Confidence 0 000 00001 111111111 1111111111
Q ss_pred c-hhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 008264 339 S-SFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAW 417 (572)
Q Consensus 339 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~ 417 (572)
. ..+.+........ ...+.......+...... ....+..+| | .+..+.+..+..+.+++...+
T Consensus 228 ~~~~p~~~~~~~~~~------~~~g~l~~~~~~~~~~~~----~~~~~~~~~---r---~~~~~~~~~~~~~~~~~~~~l 291 (400)
T PRK11646 228 MLMLPIMVNDIAGSP------SAVKWMYAIEACLSLTLL----YPIARWSEK---R---FRLEHRLMAGLLIMSLSMFPI 291 (400)
T ss_pred HHhhhhhHHhhcCCc------hHHHHHHHHHHHHHHHHH----HHHHHHHHH---h---cchhHHHHHHHHHHHHHHHHH
Confidence 1 1111111100000 001111122222111111 112222222 2 333455677777777776655
Q ss_pred HHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHH
Q 008264 418 AIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVA 497 (572)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg 497 (572)
+..+ +.+++....++.+++++...|...+++.+.+|++.||+++|+.++...+|..+|
T Consensus 292 ~~~~----------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig 349 (400)
T PRK11646 292 GMVS----------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIG 349 (400)
T ss_pred HHhh----------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhc
Confidence 5443 334444455677888888888888999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 008264 498 SLIMNAVDDIT 508 (572)
Q Consensus 498 ~~~~~~i~~~~ 508 (572)
+.+.+.+.+.+
T Consensus 350 ~~l~G~l~~~~ 360 (400)
T PRK11646 350 YIGGGWLFDLG 360 (400)
T ss_pred ccchHHHHHHH
Confidence 99988887654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=221.79 Aligned_cols=388 Identities=13% Similarity=0.032 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHH
Q 008264 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (572)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~ 101 (572)
++...++..++.......+|.+. ++++.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence 34455666666555555566554 56788999999999999999999999999999998 99999999888888777665
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (572)
+...... ..+++.+++.|++.|++.+...++..+++.|.+|+ ++|+++.++.+..
T Consensus 100 ~~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 154 (417)
T PRK10489 100 ALNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAITMLT 154 (417)
T ss_pred HHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHHHH
Confidence 4321000 11567788899999999998889999999999988 4489999999999
Q ss_pred HHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCC-CCCCchhHHHHHHHHHhhcccCCCCccc
Q 008264 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA-NTSLLPGLTQVLVASFKNRRTKLPTQAT 260 (572)
Q Consensus 182 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (572)
.++|..+||.+++++.+..+|++.|++.++..++..+..+. .|+.++++. ++++..
T Consensus 155 ~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~---------------------- 211 (417)
T PRK10489 155 VRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPALPPPPQPREHPLR---------------------- 211 (417)
T ss_pred HhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCCcccccchH----------------------
Confidence 99999999999999888889999998877666555444332 221111000 000000
Q ss_pred chhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 008264 261 EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-S 339 (572)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~ 339 (572)
+..+.. +...+.+.+................... +
T Consensus 212 -------------------~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 247 (417)
T PRK10489 212 -------------------SLLAGF-------------------------RFLLASPVVGGIALLGGLLTMASAVRVLYP 247 (417)
T ss_pred -------------------HHHHHH-------------------------HHHHcChHHHHHHHHHHHHHHHHhHHHhhH
Confidence 000000 0000001111111111111111111111 1
Q ss_pred hhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008264 340 SFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAI 419 (572)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~ 419 (572)
.+ .....+.+... .+.......+..++...+. .++.+| .++.+.+..+.++.++++.....
T Consensus 248 ~~-~~~~~g~~~~~-------~g~~~~~~~~g~~ig~~~~--------~~l~~~---~~~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T PRK10489 248 AL-ADEVWQMGAAQ-------IGLLYAAVPLGAALGALTS--------GWLAHS---ARPGLLMLLSTLGSFLAVGLFGL 308 (417)
T ss_pred HH-HHhccCCChhH-------hHHHHHHHHHHHHHHHHHH--------HHhhhc---cCcchHHHHHHHHHHHHHHHHHc
Confidence 11 11111111110 1222222333333332222 222222 22334566676666666554443
Q ss_pred HHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 008264 420 VEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASL 499 (572)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~ 499 (572)
.+ +.+......++.+++.+...+....+..+..|++.||+++|+++....+|..+|+.
T Consensus 309 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 366 (417)
T PRK10489 309 MP----------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAA 366 (417)
T ss_pred cc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 22 34444556677788888777777788889999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCcCc
Q 008264 500 IMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGT 560 (572)
Q Consensus 500 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~ 560 (572)
+.+.+.+..+ +...++..+++.++..++.+...+++|++++||.+
T Consensus 367 l~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 367 LLGGLGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHHHHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9888764432 23345555665555555555666676666665543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-23 Score=223.98 Aligned_cols=178 Identities=14% Similarity=0.025 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
.+..+.+..+...+..-.+...+| .+.+++|.+.++.+|+.+.+.++...+.++.|+++||+ |||+++..+.+++.++
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 344445555555555544444444 45789999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
++++++++ +.+.++++|+++|+|.+...|...+.+.+.++++ ++|++++++
T Consensus 85 ~~~~~~a~-----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~g~ 135 (495)
T PRK14995 85 SLAAAFSP-----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMALGV 135 (495)
T ss_pred HHHHHHcC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHH
Confidence 99999876 7888999999999999999998888888877442 459999999
Q ss_pred HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
+....++|..+||.+++++.++.||||.|++.....++.++..+...|+
T Consensus 136 ~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 136 WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999877766665554444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-23 Score=217.38 Aligned_cols=374 Identities=14% Similarity=0.053 Sum_probs=239.0
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
..+.+..+.+..++..++.....+.+|.|+++++|.|+.+.+++.+.+.++..+++++.|+++||+ ||||++..+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~ 91 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLAC 91 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHH
Confidence 345556666677777787777788899999999999999999999999999999999999999998 9999999998877
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.++.+....+...+. ....+.+.++++|+++|++.+...+...+++.|.+|+ ++|+++
T Consensus 92 ~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~a 149 (392)
T PRK12382 92 GLAGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP-------KHSGKV 149 (392)
T ss_pred HHHHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-------cccchh
Confidence 776544322210110 0012677899999999999999999999999999987 448999
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccC
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (572)
+++++.+.++|..+||.+++++.+.+||++.+.+..+..++.+.. .. +.++.+++++.
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~------------------ 207 (392)
T PRK12382 150 MSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-NG---TVRKVPAHAGE------------------ 207 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HH---hccCCCCCccc------------------
Confidence 999999999999999999999988889998877654433322211 11 11111100000
Q ss_pred CCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHH-HHHHHHHHHHHH
Q 008264 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK-VIPIWSTGIMIA 333 (572)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 333 (572)
.+ + . + +..|...+ ..........+.
T Consensus 208 ~~--------------------~---~----------------------------~---~~~~~~~~~~~~~~l~~~~~~ 233 (392)
T PRK12382 208 RP--------------------S---L----------------------------W---SVVGLIWKPGLGLALQGVGFA 233 (392)
T ss_pred Cc--------------------h---H----------------------------H---HHHHHHHHhHHHHHHHHHHHh
Confidence 00 0 0 0 00011101 001111111111
Q ss_pred Hhhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 008264 334 VTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTA 412 (572)
Q Consensus 334 ~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i 412 (572)
..... ..+ . ...+ .. ..........+..++..++ ..++.+| .++++.+..+..+.++
T Consensus 234 ~~~~~~~~~-~-~~~~----~~-----~~~~~~~~~~~~~~~~~~~----~g~l~~r-------~g~~~~~~~~~~~~~~ 291 (392)
T PRK12382 234 VIGTFVSLY-F-ASKG----WA-----MAGFTLTAFGGAFVLMRVL----FGWMPDR-------FGGVKVAIVSLLVETV 291 (392)
T ss_pred HHHHHHHHH-H-HhcC----Cc-----hhHHHHHHHHHHHHHHHHH----HHHHHHh-------cCCCeehHHHHHHHHH
Confidence 11111 111 1 1111 10 0111111222222222222 2233344 3333556677777777
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHH
Q 008264 413 SMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA 492 (572)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i 492 (572)
+.+.....+ +.+......++.+++.+...+.......+.+|++.||+++|+.++...+
T Consensus 292 ~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 349 (392)
T PRK12382 292 GLLLLWLAP----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDI 349 (392)
T ss_pred HHHHHHHcc----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 665544322 3344555667788888888887777778889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 008264 493 ANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC 547 (572)
Q Consensus 493 g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~ 547 (572)
|+.+++.+.+.+.+.. ++...|.+.+++.+++.+..+..
T Consensus 350 g~~ig~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 350 AYGVSGPLAGMLATSF----------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988776433 24566777777777776655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=220.17 Aligned_cols=179 Identities=10% Similarity=0.058 Sum_probs=153.5
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
.+..+.+....++..+..+.+.+.+|.+. +++|.++.+.+++.+.+.++..++.+++|+++||+ ||||++..+.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 34566677777888888887877777776 56999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.+.+.++. +.+.++++|+++|++.+...|...+++.|.+|+ ++|++++
T Consensus 87 ~~~~~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 136 (471)
T PRK10504 87 LGSLFCALSG-----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAM 136 (471)
T ss_pred HHHHHHHHhC-----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHH
Confidence 8888877655 677789999999999999999999999999987 5589999
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
++.+...++|..+||.+++++.++.+||+.|.+..+...+..+......++
T Consensus 137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999988999999999877666555555444443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=207.35 Aligned_cols=378 Identities=16% Similarity=0.119 Sum_probs=256.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHH
Q 008264 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (572)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~ 91 (572)
++..+..++.+.+..|.-...-|.....+ +-+.+++|.|..++|++++.|.++..++.|+...+.||+ -||++++..+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLL-p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhch-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 44556777777777777777766665444 456889999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccch
Q 008264 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (572)
Q Consensus 92 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (572)
.++.++.++++++. |++.++++|++.|+..|.+++...++.++..|+ ++|
T Consensus 86 ~lFi~~n~l~alAp-----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-------~~~ 135 (394)
T COG2814 86 ALFIVSNLLSALAP-----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPP-------GKR 135 (394)
T ss_pred HHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cch
Confidence 99999999999988 899999999999999999999999999999999 559
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCC--CCchhHHHHHHHHHh
Q 008264 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT--SLLPGLTQVLVASFK 249 (572)
Q Consensus 172 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 249 (572)
+++.++...+..++.++|..++.++.+.+|||..|++.+.+.++.++..+...| +++.+++ .+..+..+.
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~~------ 207 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLLRL------ 207 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHHH------
Confidence 999999999999999999999999999999999999998888888877776666 1111110 000000000
Q ss_pred hcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008264 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTG 329 (572)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (572)
.++.+.....+...+..
T Consensus 208 ---------------------------------------------------------------l~~p~v~~~l~~t~l~~ 224 (394)
T COG2814 208 ---------------------------------------------------------------LRRPGVLLGLLATFLFM 224 (394)
T ss_pred ---------------------------------------------------------------hcCchHHHHHHHHHHHH
Confidence 00111122233333344
Q ss_pred HHHHHhhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHH
Q 008264 330 IMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLL 408 (572)
Q Consensus 330 ~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~ 408 (572)
...+..|++ ..+ +....+++... ....-....+..+++..+.+++ .+| ++++.+.....
T Consensus 225 ~g~F~~ftYi~P~-L~~v~g~s~~~-------vs~~Ll~~Gv~~~~Gn~~gGrl----~dr--------~~~~~l~~~~~ 284 (394)
T COG2814 225 TGHFALYTYIRPF-LESVAGFSVSA-------VSLVLLAFGIAGFIGNLLGGRL----ADR--------GPRRALIAALL 284 (394)
T ss_pred cchhhhHHhHHHH-HHHccCCCHhH-------HHHHHHHHHHHHHHHHHHHhhh----ccc--------cchhHHHHHHH
Confidence 444555554 332 22222222211 2222233333333443333222 232 22344555556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHH
Q 008264 409 FSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA 488 (572)
Q Consensus 409 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 488 (572)
+..+.++.+.+.. .+.+......++.+++.............+.+ ++.++.+++++..
T Consensus 285 l~a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~a 342 (394)
T COG2814 285 LLALALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVA 342 (394)
T ss_pred HHHHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHH
Confidence 6666655555443 13334444444455554444444444444433 4579999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008264 489 GLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 550 (572)
Q Consensus 489 ~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~ 550 (572)
..++|+.+|..+.+.+.+.. ++....++.+.+.+++....+...++
T Consensus 343 a~nlgia~GA~lGG~v~~~~----------------g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 343 AFNLGIALGAALGGLVLDAL----------------GYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------------chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988887432 24566777777777776666555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=215.61 Aligned_cols=162 Identities=15% Similarity=0.025 Sum_probs=127.1
Q ss_pred HHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHh-hccC
Q 008264 30 RMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST-TILP 108 (572)
Q Consensus 30 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~-~~~~ 108 (572)
+...+.+. ...+.+++++|+|+.+.+++.+.+.+++.+++++.|+++||+ |||+++..++.....+.. ...+ .
T Consensus 4 ~~~~~~~~-~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~~--- 77 (368)
T TIGR00903 4 QAIWVTFS-PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDPF--- 77 (368)
T ss_pred hHHHHHHH-hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHhc---
Confidence 33434343 444456789999999999999999999999999999999998 999987765554444432 2222 2
Q ss_pred CCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHH
Q 008264 109 GAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188 (572)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 188 (572)
+...+++.|+++|+|.+. .++..+.++|++|+ ++|+++.++.+.+.++|..+
T Consensus 78 --------------------~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l 129 (368)
T TIGR00903 78 --------------------NYEWLLACQLLAALGQPF-LLNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIF 129 (368)
T ss_pred --------------------cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999996 45666667999998 45999999999999999999
Q ss_pred HhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 189 g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
++.+++++.+++|||+.|++.++..++..+..+...|
T Consensus 130 ~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 130 ALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999998899999999877665555554444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=225.86 Aligned_cols=165 Identities=15% Similarity=0.037 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
.+..+.+.+....+ ..+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.++++
T Consensus 173 ~l~~~~~g~d~~~i-s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~a 250 (742)
T TIGR01299 173 GLALMADGVEVFVV-GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSS 250 (742)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333 4555677889999999999999999999999999999999998 999999999999999998888
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
++. +.+.++++|++.|+|.|+..|...++++|.+|. +.|++.++++....
T Consensus 251 fa~-----------------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~ 300 (742)
T TIGR01299 251 FVQ-----------------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFW 300 (742)
T ss_pred HHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHH
Confidence 776 678899999999999999999999999999998 55999999999999
Q ss_pred HHHHHHHhhhhhheecc-------------cccchhhhHHHHHHHHHHHH
Q 008264 183 SASSIVAVTCIVYIQDN-------------LGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~-------------~~w~~~f~~~~~~~~~~~~~ 219 (572)
.+|.++++.++..+... .+||+.|++.++..++.++.
T Consensus 301 ~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred HHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 99999998776544322 36899888877665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-23 Score=216.06 Aligned_cols=173 Identities=14% Similarity=0.171 Sum_probs=153.3
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
+|+.+.+++..++...+++.+.++++.|+++++|+++.+.+++.+.+.+...++.++.|+++||+ |||+++..+.++..
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~ 84 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA 84 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence 56777788889999999999999999999999999999999999999999999999999999998 99999999999998
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.+++++++ +.+.+++.|.+.|.+.+...++..++..|.+|+ ++|++++
T Consensus 85 ~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 134 (395)
T PRK10054 85 SGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTKIF 134 (395)
T ss_pred HHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHHHH
Confidence 9888888766 666777888888888888889999999999987 4589999
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
++.+...++|..+||.+++++.+ .+|+.+|++.+++.++.++..
T Consensus 135 g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 135 SLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 799999998877766655443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-23 Score=221.17 Aligned_cols=187 Identities=10% Similarity=0.002 Sum_probs=140.1
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREY--------NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY 84 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr 84 (572)
+.+.+.++...+..+.+.+....+....+ .+++.+ +.++.+.+++.+.+.++..+++++.|+++||+ |||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr 85 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRR 85 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHH-HHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH
Confidence 34455555555555556555444443333 345554 88999999999999999999999999999998 999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCC
Q 008264 85 RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG 164 (572)
Q Consensus 85 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 164 (572)
|+++.+.+++.++.+.++++...-. +....+......++++|+++|++.|+..|...++++|++|+
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--- 151 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFT-----------SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA--- 151 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc-----------cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh---
Confidence 9999999999998887775320000 00001112456788999999999999999999999999998
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhhhhee--------cccccchhhhHHHHHHHHHHHH
Q 008264 165 TKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~~w~~~f~~~~~~~~~~~~~ 219 (572)
++|+++.++...+..+|..+++.+++.+. +.+|||++|++.++..++..+.
T Consensus 152 ----~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 152 ----HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence 44899999999999999999887655432 4579999999877666555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=214.22 Aligned_cols=164 Identities=10% Similarity=0.140 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
++..++..+..+.+...++.+ .+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHH
Confidence 334444444444444445544 567999999999999999999999999999999998 999999999999999998888
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
++. +.+.+++.|++.|++.|...+...+++.|++|+ ++|+++.++++.+.
T Consensus 107 ~~~-----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~ 156 (434)
T PRK11663 107 FSS-----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNTAH 156 (434)
T ss_pred HHh-----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHHHH
Confidence 766 677788999999999999999999999999998 45899999999999
Q ss_pred HHHHHHHhhhhhheecccccchhhhHHHHHHHHHHH
Q 008264 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 218 (572)
++|..++|.+.+++.+.+|||+.|++.++..++..+
T Consensus 157 ~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 157 NVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999999999998889999999987766554433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=208.01 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=142.4
Q ss_pred CcchHHHHHHHHHHHH---HHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHH
Q 008264 15 GLRTLPFIIANEAFER---MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~ 91 (572)
+++..++.+...+.+- ++...+.+.++. +.+++|.|+.+.++..+.+.++..++.++.|+++||+ ||||++..+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~ 85 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGV 85 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHH
Confidence 3455554444444443 344444444444 5678999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccch
Q 008264 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (572)
Q Consensus 92 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (572)
.+..++.+.+.++. +.+.+++.|+++|++.+...+...+++.|.+|+ ++|
T Consensus 86 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~ 135 (406)
T PRK15402 86 AFFILTCLAILLAQ-----------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-------ADA 135 (406)
T ss_pred HHHHHHHHHHHHHc-----------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-------hHH
Confidence 99999988887765 677789999999999999889999999999988 447
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 172 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
.+..++.+....+|..++|.+++++.++.+||+.|++.++..++..+..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 136 IKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 888888888888999999999999888889999999877776665554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=211.73 Aligned_cols=378 Identities=13% Similarity=0.084 Sum_probs=239.0
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhH-----HHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTA-----ATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-----~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~ 91 (572)
|....+.+..++..+++....++++.|.+ ++|.+..+ .+++.+++.+...++.++.|+++||+ |||+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 34555566778888888888888888875 58888655 48888999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccch
Q 008264 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (572)
Q Consensus 92 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (572)
++..++.++++.++ +.+.+++.|++.|++.+ ..+...+++.|.+|+ ++|
T Consensus 92 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-------~~~ 140 (408)
T PRK09874 92 LGMGIVMVLMGLAQ-----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR-------NKS 140 (408)
T ss_pred HHHHHHHHHHHHHh-----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH-------hhh
Confidence 99888888877655 67778999999999865 457788889998887 448
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhc
Q 008264 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 251 (572)
Q Consensus 172 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (572)
+++.++++...++|..++|.+++++.+..+||+.|++.++..++..+..+...++.++++++ ++..+
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------ 207 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSK-KEMLH------------ 207 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccc-hhhhH------------
Confidence 99999999999999999999999998888999999988877665555443333221110000 00000
Q ss_pred ccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008264 252 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIM 331 (572)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (572)
..+..... ++.+........ ...
T Consensus 208 -----------------------------~~~~~~~~-------------------------~~~~~~~~~~~~---~~~ 230 (408)
T PRK09874 208 -----------------------------MREVVTSL-------------------------KNPKLVLSLFVT---TLI 230 (408)
T ss_pred -----------------------------HHHHHHhC-------------------------cCCchHHHHHHH---HHH
Confidence 00000000 000111111111 111
Q ss_pred HHHhhcc-ch-hhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHH
Q 008264 332 IAVTISQ-SS-FLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLF 409 (572)
Q Consensus 332 ~~~~~~q-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~ 409 (572)
+...... .+ +..+..... .... ......+.......+..++..+ ...++.+| .++++.+..+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~~~~~--------~~g~l~dr---~g~~~~~~~~~~~ 297 (408)
T PRK09874 231 IQVATGSIAPILTLYVRELA-GNVS-NIAFISGMIASVPGVAALLSAP--------RLGKLGDR---IGPEKILITALIF 297 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccch-HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhc---cccchhHHHHHHH
Confidence 1111111 11 111111100 0000 0000001111111222222222 22333333 4444666667666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHH
Q 008264 410 STASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 489 (572)
Q Consensus 410 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 489 (572)
..++++...... +.+.+....++.+++.+...+...+.+.+..|++.+|+.+++.+..
T Consensus 298 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (408)
T PRK09874 298 SVLLLIPMSFVQ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSF 355 (408)
T ss_pred HHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHH
Confidence 665554443322 3444555667788888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008264 490 LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 548 (572)
Q Consensus 490 ~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~ 548 (572)
..+|..+|+.+.+.+.+.. ++...|++.+++.+++.+..+...
T Consensus 356 ~~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 356 RDIGNVTGPLMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHhhHHHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987765322 246678888887777766655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=210.15 Aligned_cols=162 Identities=11% Similarity=0.063 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
+.+.++.+..++.+.+.+| .+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+..++.++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~ 92 (393)
T PRK09705 15 VLIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRE 92 (393)
T ss_pred HHHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555 56789999999999999999999999999999999998 999999999999999999999
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
+++ ++..++++|+++|+|.+...+...+++.+++|+ + |+++.+.+..+.
T Consensus 93 ~a~-----------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-~-------~~~~~g~~~~~~ 141 (393)
T PRK09705 93 LYP-----------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-R-------TPLVMGLWSAAL 141 (393)
T ss_pred HCc-----------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-c-------chhHHHHHHHHH
Confidence 877 677799999999999999999999999998863 2 799999999999
Q ss_pred HHHHHHHhhhhhheeccc-ccchhhhHHHHHHHHHH
Q 008264 183 SASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSA 217 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~ 217 (572)
++|..+|+.+++++.++. +||+.+.+.++..++.+
T Consensus 142 ~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 142 MGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999887765 89998776554444333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=207.96 Aligned_cols=177 Identities=12% Similarity=0.107 Sum_probs=149.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHH
Q 008264 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (572)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~ 90 (572)
..|..|+.+..+....++.-...|...+.++. +.+++|.++++.++..+.+.++..++.++.|+++||+ ||||++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence 44556665555555544455555555555655 5678999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccc
Q 008264 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (572)
Q Consensus 91 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (572)
.+++.++.+++.+++ +.+.+++.|+++|++.+...|...+++.|++|+ ++
T Consensus 92 ~~~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~ 141 (394)
T PRK10213 92 AVLLTLSCLLVSFAN-----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------RT 141 (394)
T ss_pred HHHHHHHHHHHHHHC-----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------hH
Confidence 999999998888765 788899999999999999999999999999988 45
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHH
Q 008264 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 171 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 219 (572)
|+++.++.....++|..++|.+++++.+.+|||+.|++.++..++..+.
T Consensus 142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999899999999877655544433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=212.57 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=151.4
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
|.+|+..+.+.+..+++..+.... .+..+.+++++|++..+.+++.+.+.+++.+++++.|+++||+ |||+++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence 344666666666666666665544 3455588999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
++.++.+++++++ +.+.+++.|+++|++.+...|...+++.|++|+ ++|+
T Consensus 82 ~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg 131 (412)
T TIGR02332 82 LWGIASTATMFAT-----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRA 131 (412)
T ss_pred HHHHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHH
Confidence 9999999998876 677899999999999999999999999999998 5599
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheec------ccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~------~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
++.++++...++|..+++.+++++.+ ..|||+.|++.++..++..+..++..|
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 132 RANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999888753 369999999977766555444444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-22 Score=208.42 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=137.4
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
....+++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..+++++.
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------ 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence 3444567889999999999999999999999999999999998 999999999999999998888766
Q ss_pred ccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee
Q 008264 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (572)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 197 (572)
+.+.++++|++.|++.+...+...+++.|.+|+ ++|++++++.....++|..++|.+++++.
T Consensus 81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999998 55999999999999999999999999988
Q ss_pred cccccchhhhHHHHHHHHHHHHHHh
Q 008264 198 DNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 198 ~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
+..+||+.|++.++..++..+..+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhhh
Confidence 8899999999887766655554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=212.76 Aligned_cols=182 Identities=14% Similarity=0.067 Sum_probs=137.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcch
Q 008264 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYR 85 (572)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~ 85 (572)
..+.|++.+.+..+..+.+.+....+....+. +.++ .+.+..+.+++.+.+.++..++.++.|+++||+ |||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~ 87 (502)
T TIGR00887 10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKR 87 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHH
Confidence 34444555555555666666665544444443 3332 245666788999999999999999999999998 9999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCc
Q 008264 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (572)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 165 (572)
++.++.+++.++.++++++.+.. +..+...++++|+++|++.|+..+..+.+++|.+|.
T Consensus 88 ~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~---- 146 (502)
T TIGR00887 88 VYGMELIIMIIATVASGLSPGSS-----------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK---- 146 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccCcc-----------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh----
Confidence 99999999999998887754110 011367799999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHhhhhhheec-----------------------ccccchhhhHHHHHHHHHHH
Q 008264 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-----------------------NLGWKVGFGVPAVIMLLSAL 218 (572)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----------------------~~~w~~~f~~~~~~~~~~~~ 218 (572)
+.|+++.++.+....+|..+++.+..++.. .++||++|.+.++..++..+
T Consensus 147 ---~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 147 ---KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 559999999999999999999887654321 24799999877665554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-22 Score=214.39 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHH
Q 008264 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (572)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~ 99 (572)
..+.+..++..+...... ...+.+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVN-VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHH
Confidence 334445555555544443 444566788999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHH
Q 008264 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (572)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (572)
+++.++ +...++++|+++|++.+...+...+++.|.+|+ ++|+++.++++
T Consensus 83 ~~~~~~-----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~ 132 (485)
T TIGR00711 83 LCGVAP-----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIWG 132 (485)
T ss_pred HHhCcC-----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHHH
Confidence 988765 678899999999999999999999999999998 55899999999
Q ss_pred HHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 180 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
....+|..+||.+++++.++++||+.|++.++..++..+..+...+
T Consensus 133 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred HHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999877766655554444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=203.01 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHH-HHHHHHHHHHHHH
Q 008264 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGF-GCFTCLLGMVLLW 102 (572)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~~g~~~~~ 102 (572)
+..++..++.....+.++.|+++++|.|+.+.+++.+.+.+...+..++.|+++||+ ||||.++. +..+..++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence 356677778788889999999999999999999999999999999999999999998 99987655 5555556666666
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
+++ +++.+++.|+++|.+.+...|...++..|..|+++ +.+....+..+...
T Consensus 83 ~~~-----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 134 (375)
T TIGR00899 83 WNR-----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-----REAVMFSSVMRAQI 134 (375)
T ss_pred hcc-----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHH
Confidence 655 66778888999988888888888888888776532 11223367777888
Q ss_pred HHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
++|..+||.+++++.+.++||+.|++.++..++..+..+.
T Consensus 135 ~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 135 SLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred hHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988899999999988776655554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=208.70 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=145.0
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
+.+++......+..+.+.+..+.. .+..+++++++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 344555555566666666666554 4555677889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
+..++.++++++. +.+.++++|+++|+|.|...+...+++.|.+|+ ++|+
T Consensus 92 ~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-------~~r~ 141 (426)
T PRK12307 92 AYSVGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-------HLKS 141 (426)
T ss_pred HHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-------hHhh
Confidence 9999999888876 678899999999999999999999999999998 4589
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHH
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 212 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~ 212 (572)
++.+++..+.++|..+++.+.+.+.+..+||+.|++..+.
T Consensus 142 ~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 142 KASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 9999999999999999999999888888999999875443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=208.64 Aligned_cols=170 Identities=21% Similarity=0.291 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
++..++..++.....+.++.++.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++.++..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 3455666666666667777688999999999999999999999999999999999998 999999999999999966666
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
+++ +.+.++++|++.|++.+...++..+++.|.+|++ +|++.+++.+...
T Consensus 81 ~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~ 130 (352)
T PF07690_consen 81 FAS-----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE-------ERGRAFGILSAGF 130 (352)
T ss_dssp HHC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC-------CHHHHHHHHHHHH
T ss_pred hhh-----------------------hHHHHhhhccccccccccccccccccccccchhh-------hhhhccccccchh
Confidence 544 5568999999999999999999999999999993 4899999999999
Q ss_pred HHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhc
Q 008264 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 223 (572)
++|..++|.+++++.+.++||++|++.++..++..++....
T Consensus 131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~ 171 (352)
T PF07690_consen 131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILF 171 (352)
T ss_dssp HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhh
Confidence 99999999999999988999999999988877776643333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=203.31 Aligned_cols=355 Identities=13% Similarity=0.003 Sum_probs=226.5
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
+...++..++.......++.|.. +++.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHH
Confidence 34566666666666667777765 5799999999999999999999999999999998 999999999988888887776
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
++...+ ..+.+.++++|+++|++.+...++..+++.|.+|+ ++|++++++.+...
T Consensus 83 ~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 137 (365)
T TIGR00900 83 FVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-------EQLTQANSLSQAVR 137 (365)
T ss_pred HHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHhHHHHHH
Confidence 654111 12677889999999999999999999999999998 44999999999999
Q ss_pred HHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcccch
Q 008264 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEE 262 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (572)
++|..+||.+++++.+..+||+.|++.++..+++.+..+..+.+.+++ +++++...
T Consensus 138 ~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------------- 193 (365)
T TIGR00900 138 SLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSN----------------------- 193 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccch-----------------------
Confidence 999999999999998888999999987776655544433322111000 00000000
Q ss_pred hcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHhh-ccch
Q 008264 263 MYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIW-STGIMIAVTI-SQSS 340 (572)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~q~~ 340 (572)
+...+..+.. +...+.+.+....... .....+.... ....
T Consensus 194 -------------~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 194 -------------AVLRDTREGI-------------------------KFVLKNPLLRTLLLLALLFNLVFAPAIVALFP 235 (365)
T ss_pred -------------hHHHHHHhHH-------------------------HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0000000000 0000001111111111 1111111111 1111
Q ss_pred hhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 008264 341 FLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 420 (572)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~ 420 (572)
+......+.+.. ..+.......+..++...+. .++.+| .++++.+..+..+.+++.+.....
T Consensus 236 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 297 (365)
T TIGR00900 236 YVQSKYLGRGST-------HYGWVLAAFGLGALLGALLL----GLLGRY-------FKRMALMTGAIFVIGLAILVVGLT 297 (365)
T ss_pred HHHHHHhCCchH-------HHHHHHHHHHHHHHHHHHHH----HHHHHH-------hchhHHHHHHHHHHHHHHHHHHhh
Confidence 111111111110 01222222233333333322 222233 333455666666666665555443
Q ss_pred HHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008264 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLI 500 (572)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~ 500 (572)
. . +.+......++.+++.+...+....+..+..|++.||+++|+.++...++..+++.+
T Consensus 298 ~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 356 (365)
T TIGR00900 298 P--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356 (365)
T ss_pred c--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 245556677888999999999999999999999999999999999999999999998
Q ss_pred HHHhh
Q 008264 501 MNAVD 505 (572)
Q Consensus 501 ~~~i~ 505 (572)
.+.+.
T Consensus 357 ~g~l~ 361 (365)
T TIGR00900 357 AGPLA 361 (365)
T ss_pred HHHHH
Confidence 87765
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=214.29 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=128.0
Q ss_pred HHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccC
Q 008264 41 ILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120 (572)
Q Consensus 41 ~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 120 (572)
...+++++|.+.++.+++.+.+.++..++.+++|+++||+ |||++++.+.+++.++.+++++++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------- 105 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS--------------- 105 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence 3455789999999999999999999999999999999998 999999999999999998888766
Q ss_pred CccCCCcchhHHHHH-HHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecc
Q 008264 121 GCESATWSQLMPLYF-AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN 199 (572)
Q Consensus 121 ~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 199 (572)
+.+.+++ .|+++|++.+...+...+++.+++++ +|+++.++.+.+.++|..++|.+++++.+.
T Consensus 106 --------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~ 169 (455)
T TIGR00892 106 --------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR--------RRPLANGLAMAGSPVFLSTLAPLNQYLFES 169 (455)
T ss_pred --------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh--------hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5555654 57899999998767777888888842 289999999999999999999999999888
Q ss_pred cccchhhhHHHHHHHHHHHHHHhc
Q 008264 200 LGWKVGFGVPAVIMLLSALSFFLA 223 (572)
Q Consensus 200 ~~w~~~f~~~~~~~~~~~~~~~~~ 223 (572)
+|||++|++.+++.+++.+..++.
T Consensus 170 ~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 170 FGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888766555444333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-21 Score=200.16 Aligned_cols=174 Identities=13% Similarity=0.184 Sum_probs=148.2
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
+.+..+.+..+......+...+.++. +++++|.+.++.+++.+.+.++..+++++.|+++||+ |||+++..+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 44555666666666666666666654 5778999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+.++++++. +.+.+++.|++.|++.+...+...+++.|.+++ ++|+++++
T Consensus 81 ~~~l~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 130 (382)
T PRK10091 81 GNAMFTLSS-----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVA 130 (382)
T ss_pred HHHHHHHhC-----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHH
Confidence 999988876 788899999999999999889989999998887 44888999
Q ss_pred HHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
++..+..+|..++|.+++++.+..+||++|++.++..++..+..+.
T Consensus 131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988889999999987765555444333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=207.67 Aligned_cols=175 Identities=10% Similarity=0.062 Sum_probs=134.4
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
+++.+.......++..+..+.+.+. .+++.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++..+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 3444444444555555555555443 3466889999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.++.++++++. +...+++.|+++|++.+... ....++++++|+ ++|+++
T Consensus 112 ~~~~~~~~~~~-----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~-------~~rg~a 160 (476)
T PLN00028 112 APAVFCMSLVS-----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNG-------KIVGTA 160 (476)
T ss_pred HHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcCh-------hheeHH
Confidence 99888888765 66778889999999988754 456688999988 458999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhee----c-----ccccchhhhHHHHHHHHHHHHHHh
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQ----D-----NLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~----~-----~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
.++.+...++|..+++.+.+.+. + ..|||++|++.+++.++..+..+.
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99988777888877766655432 1 258999999988776655544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=209.91 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=128.7
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCC
Q 008264 47 EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESAT 126 (572)
Q Consensus 47 ~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (572)
+++++..+.+++.+.+.+++.++.+++|+++||+ |||+++..+.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6899999999999999999999999999999998 9999999999998888877654430
Q ss_pred cchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheeccc-ccchh
Q 008264 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVG 205 (572)
Q Consensus 127 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~ 205 (572)
.+...+++.|+++|++.+...|....+++|++|+ ++|+++.++.+.+.++|..++|.+.+++.+.+ +||++
T Consensus 129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 1456688999999999999999999999999998 45999999999999999999999999998874 99999
Q ss_pred hhHHHHHHHHHHHHHHh
Q 008264 206 FGVPAVIMLLSALSFFL 222 (572)
Q Consensus 206 f~~~~~~~~~~~~~~~~ 222 (572)
|++.++..++..+.++.
T Consensus 201 f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFV 217 (465)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 99987776655544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=199.19 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
....+....++..++.......++. +.++++.++.+.+++.+.+.+.+.++.+++|+++||+ ||||++.++.+++.++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 3444555666666654444444444 4678999999999999999999999999999999998 9999999999999998
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+.+.++. + .++.|+++|++.+...|+..+++.|.+|+ ++|+++.++
T Consensus 82 ~~~~~~~~-----------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~ 128 (393)
T PRK11195 82 CLLMLFGI-----------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGW 128 (393)
T ss_pred HHHHHHHH-----------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHH
Confidence 88776644 2 26789999999999999999999999998 459999999
Q ss_pred HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 216 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~ 216 (572)
.....++|..+||.++|++.+. .|+..+.+.+...+++
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999998874 4777776665544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-21 Score=208.10 Aligned_cols=175 Identities=13% Similarity=0.082 Sum_probs=130.5
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhH-HHH-----HHHHHHHHHHHHHHHHHHHhhhccCcchhhHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTA-ATN-----IIFIWTAATNFLPIVGALLADSYVGRYRMIGF 89 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-~~~-----i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~ 89 (572)
+|......+..++|.+++.. ..+..+++.++++.+.++ .++ +.++..++..+++++.|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 34445555677777777554 455666888888644322 122 24667788999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccccc
Q 008264 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (572)
Q Consensus 90 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (572)
+++++++++++++++.+..+ .+......+++.|+++|+|.|+..++..++++|++|+ +
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~---------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~-------~ 150 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYAT---------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD-------R 150 (490)
T ss_pred HHHHHHHHHHHHHhcccHHH---------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC-------C
Confidence 99999999999998762111 0000122488999999999999999999999999998 4
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhee--------cccccchhhhHHHHHHH
Q 008264 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIML 214 (572)
Q Consensus 170 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~~w~~~f~~~~~~~~ 214 (572)
+|++..++...+..+|..+|+.+...+. .++|||++|++.++..+
T Consensus 151 ~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 151 KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 4899999988888888888876554332 25799999998765444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=198.00 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=147.7
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
+|....+....+...++.....+.+| ++++++|.++++.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 44444444455555566555555554 45788999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.+.+.+++ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++++
T Consensus 82 ~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 131 (385)
T TIGR00710 82 LSSLGLALSN-----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIY 131 (385)
T ss_pred HHHHHHHHHc-----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHH
Confidence 9998888766 677789999999999999999999999999997 4589999
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhc
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 223 (572)
++.+...++|..++|.+++++.+..+||+.|++.++..++..+..+..
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888899999998777666555554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=202.07 Aligned_cols=169 Identities=18% Similarity=0.165 Sum_probs=127.5
Q ss_pred HHHHHHHHHhhcchHHHHHHHhHhcC---CChhHHHHHHH---HHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 24 ANEAFERMATVGFTPNMILYLCREYN---METTAATNIIF---IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~i~~---~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
+..++|.++.+. ..++.+++.++++ .+..+.+.+.. ...++..++++++|+++||+ ||||++..+.+++.++
T Consensus 29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 346677777655 4677778888874 55554444444 44445559999999999998 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
+++++++.+..+ .+..+...+++.|+++|+|.|+..|...++++|.+|+ ++|+++.++
T Consensus 107 ~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-------~~rg~~~~~ 164 (432)
T PRK10406 107 SLVIACLPGYET---------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE-------GRKGFYASF 164 (432)
T ss_pred HHHHhhcCCchh---------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC-------CcccHHHHH
Confidence 999987652211 0011345688999999999999999999999999998 448999999
Q ss_pred HHHHHHHHHHHHhhhhhhee--------cccccchhhhHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLLS 216 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~--------~~~~w~~~f~~~~~~~~~~ 216 (572)
.+...+.|..+++.+...+. +.+|||++|++.++..++.
T Consensus 165 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 165 QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 88888888888887654443 2579999999876655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=204.37 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=149.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHH
Q 008264 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (572)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~ 91 (572)
.+.+|+......+..+.+.+..+......+ .+++++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 455677777777788888888776655554 56789999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccch
Q 008264 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (572)
Q Consensus 92 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (572)
++..++.++++++. +++.+++.|++.|++.+...+...+++.|.+|+ ++|
T Consensus 85 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~ 134 (405)
T TIGR00891 85 VLFSAGTLACGFAP-----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-------HLR 134 (405)
T ss_pred HHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-------hhh
Confidence 99999988888765 677889999999999999999999999999998 448
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhheecccc--cchhhhHHHHHHHHH
Q 008264 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGFGVPAVIMLLS 216 (572)
Q Consensus 172 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--w~~~f~~~~~~~~~~ 216 (572)
+++.+++....++|..+++.+++.+.+..+ ||+.|++.++..++.
T Consensus 135 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877665 999998765554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-21 Score=204.22 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=129.8
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhc--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHhhhccCcchhh
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREY--NMETTAATNII-----FIWTAATNFLPIVGALLADSYVGRYRMI 87 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~~~~~~~~i~-----~~~~~~~~~~~~~~G~laDr~~Grr~~~ 87 (572)
++|.....++..++|.++...+....+.++.+++ +.++.+ +++. +...++..++.++.|+++||+ |||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence 3454555556677777776655445555666665 677764 4443 234455678888899999998 999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccc
Q 008264 88 GFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKS 167 (572)
Q Consensus 88 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 167 (572)
..+.+++.+++++++++++..+ .+......+++.|+++|++.|+..|...+++.|++|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~------ 156 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFST---------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK------ 156 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHH---------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC------
Confidence 9999999999999998762211 0001123588899999999999999999999999998
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhhhhee--------cccccchhhhHHHHHHH
Q 008264 168 KGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIML 214 (572)
Q Consensus 168 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~~w~~~f~~~~~~~~ 214 (572)
++|++..+....+..+|..++..+..++. ..+|||++|++.++..+
T Consensus 157 -~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 157 -NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 44888888888888899888876665543 25799999998766543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=211.40 Aligned_cols=157 Identities=10% Similarity=0.005 Sum_probs=128.4
Q ss_pred HHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 008264 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (572)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 118 (572)
...+.+++++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++..++++.+++.+..+.... .
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-~---------- 117 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG-S---------- 117 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh-c----------
Confidence 334567889999999999999999999999999999999998 9999999988888777766654210 0
Q ss_pred cCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec
Q 008264 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (572)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 198 (572)
...+.+.+++.|+++|++.+...|+..++++|++|+ ++|+++++++..+.++|..+++.+..++.+
T Consensus 118 -------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 118 -------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR-------RKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred -------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc-------cceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 011788899999999999999999999999999999 448999999999999999999988776655
Q ss_pred cc---ccchhhhHHHHHHHHHHHHHH
Q 008264 199 NL---GWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 199 ~~---~w~~~f~~~~~~~~~~~~~~~ 221 (572)
.. +||..|.+.++..++..+..+
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHH
Confidence 42 699988887666554444333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=208.49 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=122.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcch
Q 008264 50 METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQ 129 (572)
Q Consensus 50 ~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (572)
.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.+++..+.+ ..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 126 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF--------------------ALS 126 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc--------------------ccc
Confidence 3389999999999999999999999999998 9999999999999999988866441 114
Q ss_pred hHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhh---hheecccccchhh
Q 008264 130 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI---VYIQDNLGWKVGF 206 (572)
Q Consensus 130 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~l~~~~~w~~~f 206 (572)
.+.++++|+++|+|.+...+...++++|.+|+ ++|+++.++++...++|..+++.++ +...+..+||++|
T Consensus 127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPK-------ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh-------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 45789999999999999999999999999998 4489999999999999999999998 6666778999999
Q ss_pred hHHHHHHHHHHHHH
Q 008264 207 GVPAVIMLLSALSF 220 (572)
Q Consensus 207 ~~~~~~~~~~~~~~ 220 (572)
++.++..++.++..
T Consensus 200 ~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 200 GLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99666555444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=202.65 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=133.0
Q ss_pred hhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 008264 33 TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKP 112 (572)
Q Consensus 33 ~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (572)
.|.+ ..+.+++++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++++++.
T Consensus 19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------- 89 (377)
T TIGR00890 19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------- 89 (377)
T ss_pred Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence 3443 4556778899999999999999999999999999999999998 999999999999999999998877
Q ss_pred CCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhh
Q 008264 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (572)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 192 (572)
+.+.++++|++.|++.+...++....+.+++|+ +|+++.+++..+.++|..+++.+
T Consensus 90 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~ 145 (377)
T TIGR00890 90 ----------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD--------KRGLASGIIIGGYGLGSFILSPL 145 (377)
T ss_pred ----------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc--------ccHHHHHHHHHhcchhHhHHHHH
Confidence 788899999999999998888888888888764 27999999999999998876666
Q ss_pred hhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 193 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
.+.+.+..+||+.|++.++..++..+..+
T Consensus 146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 146 ITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 66666678999999998877665554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=198.76 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=131.5
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCcchhhH-HHHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTA-ATNFLPIVGALLADSYVGRYRMIG-FGCFT 93 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~-~~~~~ 93 (572)
.+..+..++..++.+++...+.+.++.|+++++|.|+++.|++.+...+ +..++++.+|+ +||+ ||||.++ .+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence 4555666777899999988889999999999999999999999876655 55566666666 9998 9998754 55555
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 94 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
..++..+.+++. +++.+++.+.+.+...+...|...++..|..++++ +..+.
T Consensus 92 ~~~~~~~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 143 (393)
T PRK15011 92 GVLACTLFAWNR-----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG-----REAVM 143 (393)
T ss_pred HHHHHHHHHHhh-----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc-----chHHH
Confidence 556666666655 55555555444444444667888888887665522 11234
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
..++.+...++|..+||.+++++.+++|||..|++.++..++..+..+...|
T Consensus 144 ~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 144 FSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4578888999999999999999998899999999887766655554444333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-23 Score=218.80 Aligned_cols=362 Identities=32% Similarity=0.483 Sum_probs=232.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCC
Q 008264 84 YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGD 163 (572)
Q Consensus 84 r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 163 (572)
.|++++|.+++.+|.+++..++..+.. .+..+...++++..+.++|.|+.+|+..++++|++++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~--------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL--------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC--------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh--------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 378999999999999998887733221 122356789999999999999999999999999999885
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceecc-CCCCCCchh-HH
Q 008264 164 GTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPG-LT 241 (572)
Q Consensus 164 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 241 (572)
+ ++|.++++++|++.|+|+.+++.+.+++.+++||.+.|.++++.++++++.++..++++.+. ++.+++..+ ..
T Consensus 67 ~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~ 142 (372)
T PF00854_consen 67 D----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK 142 (372)
T ss_dssp T----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred h----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence 4 56999999999999999999999999999999999999999999999999999999888776 555666555 33
Q ss_pred HHHHHHHhhcccCCCCcccchhcccCC--CccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCC-CCchhHHHHHHH
Q 008264 242 QVLVASFKNRRTKLPTQATEEMYHHGK--GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS-LCTVEQVEELKA 318 (572)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 318 (572)
.+.....+++....|. ...+...... ........ ....+....... + ...|. .++.+++++.+.
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~k~ 209 (372)
T PF00854_consen 143 LVLVAAFKKRKLAVPK-GSSWLDWALFQYSERSIFGI--IVFIRAAVIFFP-E---------IFFWALFCQVQRVEELKA 209 (372)
T ss_dssp HHHHHHHHHHCCCH-H-HHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHCC-C---------HHHHTTTSSTTTHHHCCH
T ss_pred HHHHHHHHHhhccccc-chHHHHHhhhhhhhhhhhhh--hhhccchhhhhh-h---------hhhcccCCccceeeeeee
Confidence 3444444444333321 1111111100 00000000 000000000000 0 00000 022345677788
Q ss_pred HHHHHHHHHHHHHHHHhhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCC
Q 008264 319 LIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 397 (572)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~ 397 (572)
+.+.++.+.+.+.++..+.| .++...+...++....+.+++|+..++++|++.++++.|+.+++++|+.++ +++ +
T Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~--~~~--~ 285 (372)
T PF00854_consen 210 LIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR--GIQ--P 285 (372)
T ss_dssp HHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT--------
T ss_pred eeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--ccc--c
Confidence 87888887777888888887 666677777777766634899999999999999999999999999998882 232 7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChh
Q 008264 398 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 477 (572)
Q Consensus 398 ~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 477 (572)
++..++.+|+++..++++.....+..+......++ ..+.+|.+..+++..++|.+..+...+.+++.+|++
T Consensus 286 ~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~ 356 (372)
T PF00854_consen 286 SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSR 356 (372)
T ss_dssp --HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHh
Confidence 88899999999999998888877754443322222 234577778899999999999999888666666666
Q ss_pred hHHHHHHHHHHH
Q 008264 478 MSSIASTLSGAG 489 (572)
Q Consensus 478 ~rg~~~g~~~~~ 489 (572)
..+.++|++...
T Consensus 357 ~p~~m~~~~~~~ 368 (372)
T PF00854_consen 357 APSSMMGIWFAL 368 (372)
T ss_dssp -SSSSTHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 666666665444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=199.29 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=143.8
Q ss_pred CCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHH
Q 008264 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (572)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 93 (572)
+++|..+...+..++.....+.+...++. +.+++|+|.++.+++.+.+.++..++.+++|+++||+ ||||++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 34566666566666666665555555554 5778999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 94 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
+.++.+++++++ +.+.+++.|+++|++.|...+...+++.|.+|+ ++|++
T Consensus 82 ~~i~~~l~~~~~-----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~ 131 (394)
T PRK03699 82 MILAVAGLMFSH-----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-------KQRGS 131 (394)
T ss_pred HHHHHHHHHHcc-----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-------chHHH
Confidence 999998888765 677889999999999999999999999999987 44889
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhee-cccccchhhhHHHHHHHHHHHH
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQ-DNLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~-~~~~w~~~f~~~~~~~~~~~~~ 219 (572)
+.+..+...++|..++|.+.+++. +..+||++|.+.++..++..+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 988888888999999998888765 4579999999877665544443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=194.34 Aligned_cols=343 Identities=18% Similarity=0.203 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHH
Q 008264 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (572)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~ 101 (572)
+....++..++.+...+..+.|. +++|.++.+.+++.+...++..++.++.|+++||+ |||+++..+.++..++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHH
Confidence 44566778888888877787776 56799999999999999999999999999999998 99999999999999999888
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (572)
..+. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+..
T Consensus 82 ~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 131 (352)
T cd06174 82 AFAS-----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-------KERGRALGLFSAG 131 (352)
T ss_pred HHhc-----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-------cchhhhhhHHHHH
Confidence 8765 678899999999999999999999999999998 4489999999999
Q ss_pred HHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcccc
Q 008264 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATE 261 (572)
Q Consensus 182 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
.++|..++|.+++.+.+..+||+.|++.++..++..+......
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 174 (352)
T cd06174 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 9999999999999998888999999988777665554433211
Q ss_pred hhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHhhcc-c
Q 008264 262 EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPI-WSTGIMIAVTISQ-S 339 (572)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q-~ 339 (572)
|.+...... +............ +
T Consensus 175 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (352)
T cd06174 175 -------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLP 199 (352)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 000000000 0001111111111 1
Q ss_pred hhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchH-HHHHHHHHHHHHHHHHH
Q 008264 340 SFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL-RMGIGLLFSTASMTAWA 418 (572)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~-~i~iG~~~~~i~~~~~~ 418 (572)
.+ .....+.+. ...+.......+...+..++ ..++.+|.++| + .+..+..+..++.+...
T Consensus 200 ~~-~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 200 LY-LQEVLGLSA-------AEAGLLLSLFGLGGILGALL----GGLLSDRLGRR-------RLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HH-HHHhcCCCH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHH
Confidence 11 111111111 11223333344444444443 33345554433 4 67778888888776666
Q ss_pred HHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHH
Q 008264 419 IVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS 498 (572)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~ 498 (572)
... +.+......++.+++.+...+....++.+..|++.|++.+|+.+....+++.+++
T Consensus 261 ~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 318 (352)
T cd06174 261 LAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGP 318 (352)
T ss_pred Hhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3556677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 008264 499 LIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 545 (572)
Q Consensus 499 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~ 545 (572)
.+.+.+.+.. ++...+.+.+++.+++.+..+
T Consensus 319 ~i~g~l~~~~----------------~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 319 LLAGLLLDTG----------------GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHhccc----------------CcchHHHHHHHHHHHHHHHhe
Confidence 9988765321 234556777777776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=196.61 Aligned_cols=156 Identities=8% Similarity=-0.007 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
.|.++.++...++..++.....+.+|.|+. ++|.|..++|++.+.+.++..+++++.|+++||+ ||||++..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 466788888888999988888888888865 6899999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++...+++++ +.+.++++|+++|++.+...|...+.+.+..++ ++|++++
T Consensus 83 ~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 132 (381)
T PRK03633 83 AGCAGLGLMV-----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLL 132 (381)
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHH
Confidence 9998888766 678899999999999999989888888888777 4489999
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccccc
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLGWK 203 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~ 203 (572)
++++...++|..+||.+++.+.+...++
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccch
Confidence 9999999999999999999887654333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-21 Score=204.39 Aligned_cols=156 Identities=12% Similarity=0.039 Sum_probs=124.8
Q ss_pred HHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 008264 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (572)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 118 (572)
...+|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||+++..+.++..++.+.++++...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344577777 99999999999999999999999999999998 99999999999999988888764311
Q ss_pred cCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHH-HHHhhhhhhee
Q 008264 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQ 197 (572)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~ 197 (572)
..+...+++.|++.|++.+...|.....+.+++|+ ++|+++.++++.+.++|. ..+|+++..+.
T Consensus 117 --------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 117 --------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred --------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 11566788899999999999989888899999988 458999999999999986 45665443333
Q ss_pred cccccchhhhHHHHHHHHHHHHHHh
Q 008264 198 DNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 198 ~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
...+||+.|++.++..++..+..+.
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3358999999877665554444333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-20 Score=196.49 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=137.0
Q ss_pred HhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCC
Q 008264 32 ATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (572)
Q Consensus 32 ~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~ 111 (572)
+.....+.++. +.++++.+.++.++..+++.+++.++.++.|+++||+ |||+++..+.+++.++.++++.++
T Consensus 31 ~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------ 102 (413)
T PRK15403 31 TTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------ 102 (413)
T ss_pred HHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------
Confidence 33333344443 5779999999999999999999999999999999998 999999999999999999888766
Q ss_pred CCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhh
Q 008264 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (572)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 191 (572)
+.+.++++|+++|++.+...+...+++.|.+|+ ++|++.++++....++|..+||.
T Consensus 103 -----------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 103 -----------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-------TKGIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999987777788889999988 44889999999999999999999
Q ss_pred hhhheecccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 192 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
+++++.++.|||+.|++.++..+++.+..+...|
T Consensus 159 lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 159 SGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999988889999999987776666554443333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=196.35 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=144.4
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
+.+++......+..+......+.. ....+++.+++|.++.+.+++.+...++..++.++.|+++||+ |||+++..+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence 333444444444555555554433 3455566788999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
+..++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+
T Consensus 91 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~ 140 (398)
T TIGR00895 91 LFSVFTLLCALAT-----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RFRG 140 (398)
T ss_pred HHHHHHHHHHHcc-----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------Hhhc
Confidence 9988888887655 667788999999999999999999999999998 4489
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
+++++.....++|..+++.+++++.+..+|++.|++.++...+..+..+
T Consensus 141 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (398)
T TIGR00895 141 TAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189 (398)
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence 9999999999999999999999998889999999987655444444333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=193.06 Aligned_cols=172 Identities=11% Similarity=0.106 Sum_probs=140.9
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
-+.||.+....+.+++..++.+....++++++ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+..
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 45677777778888888888777777888887 67899999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
++.++.+++...... ..+.+.+++.|++.|+|.+...+...+.+.+.+|+ ++|+
T Consensus 87 ~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g 140 (402)
T TIGR00897 87 LWCVGHAAFIVFGLG-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLS 140 (402)
T ss_pred HHHHHHHHHHHHhcc-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHH
Confidence 988887655321100 01567788899999999988888888888898887 4599
Q ss_pred hhHHHHHHHHHHHH-HHHhhhhhheecccccchhhhHHHHH
Q 008264 173 SYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGVPAVI 212 (572)
Q Consensus 173 ~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~w~~~f~~~~~~ 212 (572)
++.++++...++|. .++|.+++++.+.+||+..++.....
T Consensus 141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 99999999999996 68999999988888876665554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=202.81 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=145.3
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
+.+++.+..+.+..++..+..+... .+.+++.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 3455655566666777777766554 444567789999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
+..++.++++++. +.+.+++.|++.|++.+...++..+++.|.+|+ ++|+
T Consensus 94 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~ 143 (496)
T PRK03893 94 LFSVGTLACGFAP-----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRN 143 (496)
T ss_pred HHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHH
Confidence 9999999888766 678899999999999999999999999999998 5589
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHH
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 212 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~ 212 (572)
++.++++...++|..++|.+.+++.+.++||+.|++..+.
T Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 144 KASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999999999999999999999998889999999875443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-20 Score=192.86 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=143.8
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
.+|....+.....+..+......+.++ ++.+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 456666566666666666555545554 45688999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.++.+++.++. +.+.+++.|++.|++.+...+....+..|.+++ ++|+++
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 133 (394)
T PRK11652 84 ILGTLVALFAH-----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRHA 133 (394)
T ss_pred HHHHHHHHHHc-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHHH
Confidence 99988887755 677889999999999998888888888888877 448889
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHH
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 219 (572)
.+++..+..+|..++|.+++++.+..|||++|++.++..++..+.
T Consensus 134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988889999999877655544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=204.81 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=127.8
Q ss_pred HHHhHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 008264 42 LYLCREYNME---TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (572)
Q Consensus 42 ~yl~~~l~~~---~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 118 (572)
..+.++++++ +.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.+++.
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~------------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP------------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 3467789999 89999999999999999999999999998 999999999999999998888766
Q ss_pred cCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec
Q 008264 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (572)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 198 (572)
+++.+++.|++.|++.++..+...+++.|.+|+ ++|+.+.+++..+..+|.++++.++..+.+
T Consensus 179 ----------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (505)
T TIGR00898 179 ----------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK-------KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD 241 (505)
T ss_pred ----------cHHHHHHHHHHHHhhccchHHHHHHHhheecCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 778899999999999999999999999999998 458999999999999999999988776643
Q ss_pred ccccchhhhHHHHHHHHHHHHH
Q 008264 199 NLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 199 ~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
||+.|++.++..++..+..
T Consensus 242 ---wr~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 242 ---WRWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHH
Confidence 9999998877666555444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=200.30 Aligned_cols=392 Identities=8% Similarity=-0.003 Sum_probs=219.7
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
+..+.+.+..++..++++.+.++++.|+++++|+|+.+.+++.+.+.+...+++++.|+++||+ ||||++..+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4455666677888888888899999999999999999999999999999999999999999998 999999887666554
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+..........+. .......+..+.++..+...+.....+.++.++.. ++++..++
T Consensus 89 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~g 144 (420)
T PRK09528 89 LFGPFFIYVFAPL-------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS-----RRSGFEYG 144 (420)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH-----hhccccch
Confidence 4332211000000 00001122222333333333333333333322211 23567778
Q ss_pred HHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCC
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (572)
..+...++|..++|.+++++.+ .+|+++|++.++..++.++..+..+++.++++...+ + . .+
T Consensus 145 ~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~-~~ 206 (420)
T PRK09528 145 RARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN---------------A-L-GA 206 (420)
T ss_pred hhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc---------------c-h-hc
Confidence 8888889999999999998876 589999998877666555554443332111100000 0 0 00
Q ss_pred CcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH-HHHHHh
Q 008264 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTG-IMIAVT 335 (572)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 335 (572)
. .+...+.+..... ++ +.+.......... ..+...
T Consensus 207 ----------~--------~~~~~~~~~~~~l-------------------------~~-~~~~~l~l~~~~~~~~~~~~ 242 (420)
T PRK09528 207 ----------N--------ASAVSLKDALALL-------------------------KL-PKFWFLVLYVIGVACFYDVF 242 (420)
T ss_pred ----------c--------cccccHHHHHHHc-------------------------cC-CCeEeehHHHHHHHHHHHHH
Confidence 0 0000000000000 00 0010111111111 111111
Q ss_pred hcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHH
Q 008264 336 ISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASM 414 (572)
Q Consensus 336 ~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~ 414 (572)
..+ +.+.. .. ..+...+ ....+.....+.+...+..++ ..++.+|+ ++++.+..+.++.+++.
T Consensus 243 ~~~~~~~~~-~~-~~~~~~~---~~~~g~~~~~~~~~~~~~~~~----~g~l~dr~-------g~~~~~~~~~~l~~~~~ 306 (420)
T PRK09528 243 DQQFPNFFA-SF-FATPEQG---TRVFGYLNSFQVFLEALIMFF----APFIINRI-------GAKNALLLAGTIMAVRI 306 (420)
T ss_pred HHHHHHHHH-HH-HhccCcc---hHHHHHHHHHHHHHHHHHHHH----HHHHHHHh-------CcchhhHHHHHHHHHHH
Confidence 122 22211 11 1111110 000122223333333333333 33334553 33356777777777776
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHH-HHHHHHHH
Q 008264 415 TAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAA 493 (572)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig 493 (572)
+..++.. +.++++...++.+++.....+...+++.+..|++.+++..+. +++...+|
T Consensus 307 ~l~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg 364 (420)
T PRK09528 307 IGSGFAT----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLG 364 (420)
T ss_pred HHHHhcc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHH
Confidence 6655433 455566667778888877777777888888999999988765 67788899
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008264 494 NLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 549 (572)
Q Consensus 494 ~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~ 549 (572)
+.+++.+.+.+.+.. ++...|.+.+++.++..++.+...+
T Consensus 365 ~~ig~~~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 365 AVFLSTLAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998887766433 1455677777777666655554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-19 Score=189.10 Aligned_cols=362 Identities=11% Similarity=0.035 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhh----HHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI----GFGCFTC 94 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~----~~~~~~~ 94 (572)
...+.+..++...++-...+++|.|++ ++|.|..+.+++.+.+.+...+++++.|.++||+ |||+.. ..+..++
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence 333455566666666666788888884 6899999999999999999999999999999998 985433 2222222
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.+ ..+..++ +.+.+++.|++++.+.+...|...++..+. + ++|++.
T Consensus 84 ~~--~~~~~~~-----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~-------~~~~~~ 129 (382)
T TIGR00902 84 AA--AFSAGAH-----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--Q-------KQFGLD 129 (382)
T ss_pred HH--HHHHhhh-----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--H-------HHcCCC
Confidence 22 1222333 678888999999999988899988887653 2 237888
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccC
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (572)
++......++|..++|.+++++.+++|||..|++......+.++ .+...++. ++++++ +
T Consensus 130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~-------------~---- 188 (382)
T TIGR00902 130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAI-------------P---- 188 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccc-------------c----
Confidence 99999999999999999999999999999999876554332222 22222211 111000 0
Q ss_pred CCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH-HHHHHHHH
Q 008264 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPI-WSTGIMIA 333 (572)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 333 (572)
++ + ..+..++ .+-.++ |+++..... +.....+.
T Consensus 189 -~~-~---------------~~~~~~~----------------------------~~~l~~-~~~~~~l~~~~l~~~~~~ 222 (382)
T TIGR00902 189 -ED-E---------------SQGDSAF----------------------------IALLKN-PMNLRFLAAVCLIQGAHA 222 (382)
T ss_pred -cc-c---------------cccchhH----------------------------HHHHcC-hHHHHHHHHHHHHHHHHH
Confidence 00 0 0000000 000011 222222111 11111122
Q ss_pred HhhccchhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 008264 334 VTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTAS 413 (572)
Q Consensus 334 ~~~~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~ 413 (572)
..+...+... +..+.+... .+.......+..++ .....+|+.+| +++++.+.++.++..+.
T Consensus 223 ~~~~~~~~~l-~~~g~s~~~-------~g~l~~~~~~~~i~--------~~~~~~~l~~r---~g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 223 AYYGFSAIYW-QAAGISASA-------TGLLWGIGVLAEII--------IFAFSNKLFQN---CSARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHH-HHCCCCHhH-------HHHHHHHHHHHHHH--------HHHHhHHHHhh---CCHHHHHHHHHHHHHHH
Confidence 2222111111 111111111 11122222222222 22233444455 77778889999999988
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHH-HHHHH
Q 008264 414 MTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSA 492 (572)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~i 492 (572)
....++.+ +.+.++...++.++.+++..+....++.+. |++.|++++++++ +...+
T Consensus 284 ~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~ 340 (382)
T TIGR00902 284 WAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGG 340 (382)
T ss_pred HHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHH
Confidence 87776554 556666677999999999999999999887 9999999999987 46678
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 008264 493 ANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 542 (572)
Q Consensus 493 g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~ 542 (572)
|..+++.+.+.+.+..+ ...|+..+++.+++.+
T Consensus 341 g~~~g~~~~G~l~~~~g-----------------~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 341 LIAIFTAFAGFIYPTLG-----------------AGTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHhcc-----------------HHHHHHHHHHHHHHHH
Confidence 99999998877764331 2457777777776543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-19 Score=186.89 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
+.......+....+.....+.+|. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence 334445556666665555545554 5678999999999999999999999999999999998 99999999999999998
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
..+..+. +...+++.|+++|++.+...+...+++.|.+|+ ++|+++.++.
T Consensus 83 ~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~ 132 (392)
T PRK10473 83 LLCSLAE-----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLL 132 (392)
T ss_pred HHHHHhC-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHH
Confidence 8887655 567788999999999999999999999999988 4599999999
Q ss_pred HHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008264 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
+...++|..++|.+++++.+..+|++.|++.++..++..+..
T Consensus 133 ~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 133 NGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988778899999998877655555443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-19 Score=188.60 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=129.0
Q ss_pred HhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCcc
Q 008264 44 LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCE 123 (572)
Q Consensus 44 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (572)
+++++|.++++.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.++++++.
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------ 92 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE------------------ 92 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 6789999999999999999999999999999999998 999999999999998888887765
Q ss_pred CCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccc
Q 008264 124 SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK 203 (572)
Q Consensus 124 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~ 203 (572)
+.+.+++.|+++|++.+...+...+++.|.+|+ +++++.++......++|..++|.+++++.+.++||
T Consensus 93 -----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 160 (401)
T PRK11043 93 -----SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA-------QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ 160 (401)
T ss_pred -----CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 677789999999999988888888999999987 44778888888888999999999999998889999
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 008264 204 VGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 204 ~~f~~~~~~~~~~~~~~~ 221 (572)
+.|++.++..++..+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 161 AIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999987776665554443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-21 Score=193.85 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=160.5
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
.++.+.++.+..++|+..-|.+.. ...-.++.+|++++..|++.+.+.+...+..|+.|+++||+ -||+++.+|.+++
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW 108 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIW 108 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHH
Confidence 345566677788999999887754 55566788999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.++++.++++. .++.+.+.|.+.|+|.+...|..+++++|.||+ .+|++.
T Consensus 109 ~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------~~Rs~~ 158 (493)
T KOG1330|consen 109 TLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------DKRSRV 158 (493)
T ss_pred HHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------hhhhHH
Confidence 99999999987 789999999999999999999999999999999 459999
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
++++|++.++|..+|.+++.++.+..+ |||.|++.+++.++..++..+..++
T Consensus 159 ~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 159 LGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred HHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 999999999999999999999987665 9999999998888777766555543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-19 Score=186.50 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=136.5
Q ss_pred cchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008264 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (572)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 114 (572)
...+.++.+. +++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++...+.++.
T Consensus 9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~--------- 77 (377)
T PRK11102 9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ--------- 77 (377)
T ss_pred HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc---------
Confidence 3446666665 57899999999999999999999999999999998 999999999999999998888765
Q ss_pred cccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh
Q 008264 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (572)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 194 (572)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|++++++.+...++|..++|.+++
T Consensus 78 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 78 --------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPIIGG 136 (377)
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677789999999999999999999999999988 44899999999999999999999999
Q ss_pred heecccccchhhhHHHHHHHHHHHHHHh
Q 008264 195 YIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 195 ~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
++.+..+||+.|++.++..++..+....
T Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 137 WLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9988889999999877766655444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=190.80 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHhhcch---HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 21 FIIANEAFERMATVGFT---PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 21 ~~~~~~~~~~~~~~~~~---~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
-++...++.=.++|-.. ....+++.++.++|.+|.|.+.+++.+.+.++-.+.|.++||. +.|+.+.+++++.++.
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~ 107 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHH
Confidence 34445555555556544 3445778889999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+++++++ +...+.+.-++.|...|.-+|+....++.++|. ++||+..++
T Consensus 108 nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr-------~eRG~~~si 157 (448)
T COG2271 108 NILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR-------KERGTWWSI 157 (448)
T ss_pred HHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc-------cccCceEEE
Confidence 99999988 788899999999999999999999999999999 449999999
Q ss_pred HHHHHHHHHHHHhhhh--hheecccccchhhhHHHHHHHHHHHHHHhcC
Q 008264 178 YYVFVSASSIVAVTCI--VYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~--~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
.+.+-|+|+.+.|.+. +++..+++||..|++++++.++..+..+...
T Consensus 158 Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 158 WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998 8888888999999999988766555544433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=189.91 Aligned_cols=178 Identities=11% Similarity=0.016 Sum_probs=131.5
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCR-EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
|.++...+.....-...+.+ +.+...+.+ ++|+|++|.+++.++..+.+.++.++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~~~f~~~F~~w~~~-~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLF-SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 55544333333333333333 444555544 8999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhh-ccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 96 LGMVLLWSTT-ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 96 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
+.++..+++. +. ..++..+++.|++.|++ |..+++....+++++|+ ++|+++
T Consensus 112 i~~~~~~~a~~~~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-------~~rG~A 164 (462)
T PRK15034 112 IPCVWLGIAVQNP-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-------AKQGSA 164 (462)
T ss_pred HHHHHHHHHHccc-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-------hHhHHH
Confidence 9998888751 11 12788899999999998 66889999999999998 558999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhee-----c-------------ccccchhhhHHHHHHHHHHHHHHhc
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQ-----D-------------NLGWKVGFGVPAVIMLLSALSFFLA 223 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~-----~-------------~~~w~~~f~~~~~~~~~~~~~~~~~ 223 (572)
.+++....|+|..+++.+.+.+. . ..+||.++++..+..++..+..++.
T Consensus 165 ~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 165 LGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99997777777776665544322 1 2347777767666665555554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=193.90 Aligned_cols=159 Identities=11% Similarity=0.041 Sum_probs=129.1
Q ss_pred HHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 008264 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (572)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 118 (572)
...+++++ +|+++++.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++++.+.+..
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 115 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT---------- 115 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc----------
Confidence 34456665 599999999999999999999999999999998 999999999999888887776543111
Q ss_pred cCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhh-ee
Q 008264 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY-IQ 197 (572)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-l~ 197 (572)
.+...+++.|++.|++.|...+.....+.|++|+ ++|++++++++...++|..+++.+.+. +.
T Consensus 116 ---------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 116 ---------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ-------SERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred ---------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc-------ccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 1566678889999999999999999999999998 448999999999999999998877665 44
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 198 DNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 198 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
.+.+||.+|++.++..++..+..+...+
T Consensus 180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 180 WFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568999999987776665544433333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-20 Score=191.22 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=134.0
Q ss_pred HHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 008264 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (572)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 118 (572)
...+++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++++++.
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------- 81 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------- 81 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence 444577889999999999999999999999999999999998 999999999999999999988766
Q ss_pred cCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHh-hhhhhee
Q 008264 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV-TCIVYIQ 197 (572)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~ 197 (572)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|+++.++.+...++|..++| .+++.+.
T Consensus 82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR-------SERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH-------hhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999998 4489999999999999999999 5666777
Q ss_pred cccccchhhhHHHHHHHHHHHHHHh
Q 008264 198 DNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 198 ~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
+..+||+.|++.++..++..+..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhe
Confidence 7789999999887666554444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-19 Score=187.92 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHH-HHHHH-----HHHHHHHHHHHHhhhccCcchhhHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII-FIWTA-----ATNFLPIVGALLADSYVGRYRMIGFG 90 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~-~~~~~-----~~~~~~~~~G~laDr~~Grr~~~~~~ 90 (572)
+...-..+..+++-++...+ ....+.+.++++.++.+.+.+. +...+ ...+++++.|+++||+ ||||++..+
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~ 92 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHH
Confidence 44444455666666665544 4555678889999887765443 22222 2246788999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccc
Q 008264 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (572)
Q Consensus 91 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (572)
.+++.+++++++++.+... ........++++|+++|++.|...++..++++|++|+ ++
T Consensus 93 ~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------~~ 150 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYAT---------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP-------GR 150 (434)
T ss_pred HHHHHHHHHHHHhCCcHHH---------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc-------cc
Confidence 9999999999988662111 0000012468899999999999999999999999998 44
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhe--------ecccccchhhhHHHH
Q 008264 171 LQSYFSWYYVFVSASSIVAVTCIVYI--------QDNLGWKVGFGVPAV 211 (572)
Q Consensus 171 r~~~~~~~~~~~~~g~~~g~~~~~~l--------~~~~~w~~~f~~~~~ 211 (572)
|+++.+++....++|..+++.+++.+ .+.+|||++|++..+
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 89999998888888888877776654 246799999987543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=186.84 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=121.4
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
....+..+..+.+...+........+| .+++++|.|+.+.+++.+.+.+++.+++++.|+++||+ ||||++..+..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 334444445555555666555544444 45999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.++.+++..+. . ..++..++++|+++|+|.|...++.++++.|..|+ ++|...
T Consensus 102 ~~~~~l~~~~~-~-------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-------~~~~~~ 154 (438)
T PRK10133 102 ALGAALFWPAA-E-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFR 154 (438)
T ss_pred HHHHHHHHHHH-h-------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-------hhHHHH
Confidence 99998764221 0 11678899999999999999999999999987555 235556
Q ss_pred HHHHHHHHHHHHHHHhhhhhhe
Q 008264 175 FSWYYVFVSASSIVAVTCIVYI 196 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l 196 (572)
.+.+.....+|..+|+.+++.+
T Consensus 155 ~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 155 LNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999887643
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-19 Score=186.81 Aligned_cols=178 Identities=8% Similarity=-0.033 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
..+......++...+...+.++++.|+++++|.++.+.+++.+.+.+...++.++.|+++||+ ||||.+..+....+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 345555667777777778889999999999999999999999999999999999999999998 9999999877666554
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
..........+. .........++.+++.|++.+...|...++..|..++ ++..++.
T Consensus 82 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~g~ 137 (396)
T TIGR00882 82 FAPFFIYVFGPL---------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN---------SNFEYGK 137 (396)
T ss_pred HHHHHHHHhhhH---------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh---------cccccch
Confidence 433211100000 0000223456678888998888888888777664322 3456677
Q ss_pred HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
.....++|..+||.+++.+.+ .+|+.+|++.+.+.++..+..+
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 777889999999999998865 5999999988776665554443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=193.05 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=135.8
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCC
Q 008264 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (572)
Q Consensus 46 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (572)
.+++++..+.+++.+.+..++.++++++|+++||+ |-|+++.++.++.++++++...+.+.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~------------------ 126 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI------------------ 126 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 36889999999999999999999999999999998 99999999999999999999887732
Q ss_pred CcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecc-cccch
Q 008264 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKV 204 (572)
Q Consensus 126 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~ 204 (572)
+.+.+++.|+++|++.|...|+...+.+.+.|..| |++..++.+.+..+|.+++-.++|++.+. +||++
T Consensus 127 ---~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E-------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 127 ---GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE-------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred ---cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 33467899999999999999999999999999944 99999999999999999999999999888 89999
Q ss_pred hhhHHHHHHHHHHHHHHhcCC
Q 008264 205 GFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 205 ~f~~~~~~~~~~~~~~~~~~~ 225 (572)
+|++.+...++..++++....
T Consensus 197 ifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999998887777776655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-18 Score=184.54 Aligned_cols=352 Identities=13% Similarity=0.061 Sum_probs=230.0
Q ss_pred HHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHH
Q 008264 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (572)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~ 103 (572)
..+++.+++......-++-++. ++.-|+...+++..+..+-..+..+++|.++||+ .|||+++.+-++..+...++++
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~ 94 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAV 94 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHH
Confidence 3555666665555444554444 5678999999999999999999999999999998 9999999998888776666554
Q ss_pred hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHH
Q 008264 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (572)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (572)
..... ..+.+.+++.-++.|++.+...|+.++++.+..|++ +...+.++.....|
T Consensus 95 l~~~~------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~-------~L~~A~al~s~~~n 149 (524)
T PF05977_consen 95 LAFFG------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE-------DLPAANALNSISFN 149 (524)
T ss_pred HHHhC------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh-------hHHHHHHHHHHHHH
Confidence 33111 226788899999999999999999999999999994 48999999999999
Q ss_pred HHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcccchh
Q 008264 184 ASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEM 263 (572)
Q Consensus 184 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (572)
+.-++||.++|.+....|-.++|.+.++..++.++.+...+++.++ ++.+.....+.+...++
T Consensus 150 iar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~G~r-------------- 212 (524)
T PF05977_consen 150 IARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALREGLR-------------- 212 (524)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHHHHH--------------
Confidence 9999999999999888899999999988877766555444332111 11110111111111100
Q ss_pred cccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--chh
Q 008264 264 YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ--SSF 341 (572)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q--~~~ 341 (572)
.+.+.+.+...+... ..+...... ..+
T Consensus 213 ------------------------------------------------yv~~~~~l~~~l~~~---~~~~l~~~a~~aLl 241 (524)
T PF05977_consen 213 ------------------------------------------------YVRSSPPLRSVLLRS---FLFNLFASAVWALL 241 (524)
T ss_pred ------------------------------------------------HHhcchHHHHHHHHH---HHHHHhhhHHHHhh
Confidence 000011111111110 011111100 111
Q ss_pred hhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008264 342 LVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 421 (572)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~ 421 (572)
+++.....+..- ..-+.+....+++.+++.. . ..++.++ .+..+.+..+.++.+++++.+++..
T Consensus 242 Pl~a~~~l~~~a-----~~yGll~a~~gvGai~Gal----~----~~~l~~~---~~~~~lv~~~~~~~a~~~~~lal~~ 305 (524)
T PF05977_consen 242 PLFARDVLGGGA-----SGYGLLLAAFGVGAILGAL----L----LPRLRRR---LSSRRLVLLASLLFALALLLLALSP 305 (524)
T ss_pred hHHHHHHhCCcH-----HHHHHHHHHHHHHHHHHHH----H----HHHhhcc---cCcchhhHHHHHHHHHHHHHHhcch
Confidence 122221111110 0011222222332232222 2 2233333 4555667778877777776666543
Q ss_pred HHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008264 422 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 501 (572)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~ 501 (572)
+.+...+.+++.|++........++.+.+..|+++||+.++++++....+..+|..+.
T Consensus 306 ----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 306 ----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778889999999999999999999999999999999999999999999998
Q ss_pred HHhhhhh
Q 008264 502 NAVDDIT 508 (572)
Q Consensus 502 ~~i~~~~ 508 (572)
+.+.+..
T Consensus 364 G~la~~~ 370 (524)
T PF05977_consen 364 GFLADHF 370 (524)
T ss_pred HHHHHHh
Confidence 8876443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-18 Score=179.32 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=119.8
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc----hhhHHHHHHHHHHHHHH
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY----RMIGFGCFTCLLGMVLL 101 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr----~~~~~~~~~~~~g~~~~ 101 (572)
.++..+++..+.+++|.|++ ++|.|..+.|++.+.+.+...+++++.|.++||+ ||| +.+..+..+. .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence 44444666666788999985 5799999999999999999999999999999998 994 3333222221 11112
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (572)
..++ +.+.+++.|++.|++.+...|...++..+..+ +|++.++.....
T Consensus 89 ~~~~-----------------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~---------~~~~a~~~~~~~ 136 (382)
T PRK11128 89 FGAH-----------------------SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK---------QIGLDYGKVRLW 136 (382)
T ss_pred Hhcc-----------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh---------hccCCcchHHHH
Confidence 1112 67888889999999999999998888887622 267778888888
Q ss_pred HHHHHHHHhhhhhheecccccchhhhHHHHHHHHHH
Q 008264 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (572)
Q Consensus 182 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~ 217 (572)
.++|..+||.+++++.+++|||..|++.++..++.+
T Consensus 137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 899999999999999999999999988776544443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-18 Score=179.72 Aligned_cols=396 Identities=11% Similarity=0.056 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-chhhHHHHHHHHHHHHH
Q 008264 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-YRMIGFGCFTCLLGMVL 100 (572)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~~g~~~ 100 (572)
+.++.++.-.++-...++++.|+++++|++..|.|++.+.+.++..+++++.|+++||+ || |+++..+.++..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 44455566666556669999999999999999999999999999999999999999997 66 77888888777777777
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCC-cccccchhhhHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG-TKSKGALQSYFSWYY 179 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~ 179 (572)
..+++ +.+.+++.|++.|++.+...+...++..+...+..+ ..+...|.+.++
T Consensus 86 ~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G--- 139 (418)
T TIGR00889 86 AAQVT-----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG--- 139 (418)
T ss_pred HHHhc-----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh---
Confidence 66654 567788889999998887777777665433321100 000011344443
Q ss_pred HHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcc
Q 008264 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA 259 (572)
Q Consensus 180 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (572)
.+|..+||.+++.+.....|+ +|++.++..++..+. .+..|+.++.+.+++ .+..+ +
T Consensus 140 ---~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~--~~~~~-------~--------- 196 (418)
T TIGR00889 140 ---TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAK--MSIKV-------M--------- 196 (418)
T ss_pred ---hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccc--cCHHH-------H---------
Confidence 478888888888774433454 455555544443332 222222111000000 00000 0
Q ss_pred cchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008264 260 TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKV-IPIWSTGIMIAVTISQ 338 (572)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~q 338 (572)
...+..+ . .++ +.+..+ +..+.........+..
T Consensus 197 -----------------~~~~~~~---~-------------------------~k~-~~~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T TIGR00889 197 -----------------LGLDAFI---L-------------------------FKN-KRMAIFFFFSMLLGAPLQITNIF 230 (418)
T ss_pred -----------------hhhhHHH---H-------------------------hcC-CCeeeHHHHHHHHHhHHHHHHHh
Confidence 0000000 0 000 011011 1111111111111111
Q ss_pred -chhhhhhhccCCCCCCCCce-ecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHH
Q 008264 339 -SSFLVLQASSMDRHVTPNFE-IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTA 416 (572)
Q Consensus 339 -~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~ 416 (572)
..+ . ...+.+...+.++. ...+.......+..++...+ ..++.+| +++++.+.++.++.++++..
T Consensus 231 ~~~~-~-~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~----~g~l~dr-------~g~r~~l~~~~~~~~v~~~l 297 (418)
T TIGR00889 231 GNGF-L-HEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILT----IPFFLKR-------FGIKKVMLLSLVAWALRFGF 297 (418)
T ss_pred HHHH-H-HHhcccccccchhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHH-------hCcHHHHHHHHHHHHHHHHH
Confidence 111 1 11111110000000 00122222233333333222 3333455 44557788888888777655
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHH-HHHHHHHH
Q 008264 417 WAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANL 495 (572)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~ 495 (572)
..... ....+.+.+....++.+++++...+....++.+.+|++.||+++|+.+ ....+|..
T Consensus 298 ~~~~~------------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~ 359 (418)
T TIGR00889 298 FAYGD------------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSL 359 (418)
T ss_pred HHHcC------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHH
Confidence 54421 000123344556778888998888888889999999999999999997 56789999
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008264 496 VASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 554 (572)
Q Consensus 496 lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~ 554 (572)
+|+.+.+.+.+..+.... .+|+..|.+.+++.+++.+..+++.++..+.
T Consensus 360 iGp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 360 LGYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999998877654421000 1256677788888888887777777655433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-19 Score=209.35 Aligned_cols=144 Identities=11% Similarity=0.011 Sum_probs=110.8
Q ss_pred HHhHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHH--HHHHHHHHHHHHHh-hccCCCCCCCcccc
Q 008264 43 YLCREYNMET-TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG--CFTCLLGMVLLWST-TILPGAKPPACDQL 118 (572)
Q Consensus 43 yl~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~--~~~~~~g~~~~~~~-~~~~~~~~~~~~~~ 118 (572)
.+.+..+.+. ...++..+++.+.+.++.+++|+++||+ |||+++... ..+...+..+.++. .
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~------------- 106 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN------------- 106 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3344444433 4467788889999999999999999998 999986432 22222222222221 2
Q ss_pred cCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec
Q 008264 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (572)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 198 (572)
+++.++++|+++|++.+...|+..+++.|++|+ ++|++++++.+.+.++|.++||.++|++.+
T Consensus 107 ----------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~-------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 ----------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNK-------DELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred ----------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc-------cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999998 448999999999999999999999999998
Q ss_pred ccccchhhhHHHHHHHHHH
Q 008264 199 NLGWKVGFGVPAVIMLLSA 217 (572)
Q Consensus 199 ~~~w~~~f~~~~~~~~~~~ 217 (572)
..+|++.|.+..+..++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~ 188 (1140)
T PRK06814 170 SGNFVILVALLMGIAVLGW 188 (1140)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 8999999854444444333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-18 Score=204.66 Aligned_cols=155 Identities=10% Similarity=0.074 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChh--HHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETT--AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
+.....++..++..+...+....+..++...++.+.. ..+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 3344444556666655555555666667667776544 468899999999999999999999998 9999999988776
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.++.++..++.. ..+.+.+++.|+++|++.+...|+..++++|.+|+ ++|+++
T Consensus 88 ~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~ 140 (1146)
T PRK08633 88 VGLTLLIVLAYY--------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-------ENLSRA 140 (1146)
T ss_pred HHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-------ccchhh
Confidence 666555443320 01578899999999999999999999999999998 448999
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecc
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDN 199 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~ 199 (572)
++++..+.++|.++|+.+++++.+.
T Consensus 141 ~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 141 NGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988765
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=184.44 Aligned_cols=173 Identities=12% Similarity=0.173 Sum_probs=128.8
Q ss_pred HHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcch-hhHHHHHHHHHHHHHHHHh
Q 008264 29 ERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYR-MIGFGCFTCLLGMVLLWST 104 (572)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~~g~~~~~~~ 104 (572)
....+..+..+++.|+++++|+++.++|++.++..+...+..|+.|+++||. +|||| .++.+...++++.+++..+
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~ 90 (437)
T TIGR00792 11 NNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT 90 (437)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC
Confidence 3444455567899999999999999999999999999999999999999983 38855 6777878888887777654
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 184 (572)
.+... ......+++.+++.+++.+...++..++..|..+++ ++|++..++.....++
T Consensus 91 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~~~ 147 (437)
T TIGR00792 91 PDFSA-----------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP------RERESLSTFRRFGATL 147 (437)
T ss_pred CCCCc-----------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH------HHHHHHHHHHHHHHHH
Confidence 31111 113455677788889998888888889999887653 3488999988888888
Q ss_pred HHHHHhhhhhhee-------cccccchhhhHHHHHHHHHHHHHHhcC
Q 008264 185 SSIVAVTCIVYIQ-------DNLGWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 185 g~~~g~~~~~~l~-------~~~~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
|..+++.+.+.+. +..+|++.+.+.+++.++..+..+...
T Consensus 148 g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 194 (437)
T TIGR00792 148 GGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGT 194 (437)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8877766544332 246899999888777665555444433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=176.04 Aligned_cols=403 Identities=11% Similarity=0.048 Sum_probs=235.9
Q ss_pred hcC--CChhHH----HHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccC
Q 008264 47 EYN--METTAA----TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120 (572)
Q Consensus 47 ~l~--~~~~~~----~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 120 (572)
++| +++++. +.+++++.++.++++.++|+++||+ |||..++.+.++..++.++..++...+
T Consensus 48 r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~------------ 114 (485)
T KOG0569|consen 48 RYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP------------ 114 (485)
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 455 455433 5567889999999999999999998 999999999999888888877765222
Q ss_pred CccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh-h-eec
Q 008264 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV-Y-IQD 198 (572)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~-~-l~~ 198 (572)
+..+++++|++.|+..|......+-++.|..|. +.||..-.+...+..+|.+++..++. . +.+
T Consensus 115 --------~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~-------~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt 179 (485)
T KOG0569|consen 115 --------SFEMLILGRLIVGLACGLSTGLVPMYLTEISPK-------NLRGALGTLLQIGVVIGILLGQVLGLPSLLGT 179 (485)
T ss_pred --------hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChh-------hhccHHHHHHHHHHHHHHHHHHHHccHHhcCC
Confidence 688899999999999999999999999999999 56999999999999999999976643 3 334
Q ss_pred ccccchhhhHHHHHHHHHHHHHHhc--CCceecc-CCCCCCchhHHHHHHHHHhhcccCCCCcccchhcccCCCccccCC
Q 008264 199 NLGWKVGFGVPAVIMLLSALSFFLA--SPFYVKS-KANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMP 275 (572)
Q Consensus 199 ~~~w~~~f~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (572)
.-.|++.+.+..+..++.++.+.+. .|+|.-. +.+.+ +..+ .+.-+ +..++++. .
T Consensus 180 ~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~---~A~~-sl~~y---------------~G~~~~~~---~ 237 (485)
T KOG0569|consen 180 EDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEE---EARK-ALKFY---------------RGKEDVEA---E 237 (485)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHH---HHHH-HHHHH---------------hCCCcchh---H
Confidence 4569999988877766665554332 2332211 11111 1111 11111 11110000 0
Q ss_pred CchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH--hhccchhhhhhhccCCCCC
Q 008264 276 SENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAV--TISQSSFLVLQASSMDRHV 353 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~q~~~~~~~~~~~~~~l 353 (572)
.+........+...+ ....++++..+. ...++.....+.+.....+-.. ...+++. +....+
T Consensus 238 ~e~~~~e~~~~~~~~---------~~~~sl~~~~~~-~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~-i~~~aG----- 301 (485)
T KOG0569|consen 238 IEEMLREIEEEELEK---------KKQISLRQLLKN-PTLRRPLLIGIVVSFAQQFSGINAIFFYSTS-IFKTAG----- 301 (485)
T ss_pred HHHHHHHHHHhcccc---------ccCCcHHHHhcC-cchhHHHHHHHHHHHHHHhcCcceeHHHHHH-HHHHcC-----
Confidence 000001111110000 000011100000 0112222111111111111100 0000111 222222
Q ss_pred CCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008264 354 TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGI 433 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~ 433 (572)
++.......|.....+-.+ .......+.+|++|| +++.+++.++.+...++...........
T Consensus 302 -----~~~~~a~~an~~~g~v~~~-~t~~~~~lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~~----- 363 (485)
T KOG0569|consen 302 -----FTPEEAQYANLGIGIVNLL-STLVSPFLIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSFG----- 363 (485)
T ss_pred -----CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 2222222222222222111 122233446775555 7788888888877766665543211110
Q ss_pred CCCccccccchhhHHHHHHHHHHHHH-HHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008264 434 SDDLRAVVQMSAMWQLPYLVLSGLAM-AFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGG 512 (572)
Q Consensus 434 ~~~~~~~~~~s~~~l~~~~~l~g~g~-~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~ 512 (572)
...++. .+...++..+.. ....|..+-+..|.+|++.|+.++++....+++.+++.....+.+....|
T Consensus 364 -------~~~~y~-~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--- 432 (485)
T KOG0569|consen 364 -------SWLSYL-CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG--- 432 (485)
T ss_pred -------hHHHHH-HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 011111 122333333332 33466677778899999999999999999999999999999998876553
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCc
Q 008264 513 NGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 558 (572)
Q Consensus 513 ~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~~~~~ 558 (572)
..+|+.+.+.+++..+..+...||+|+|+-+|
T Consensus 433 --------------~~~filF~i~~~~~~i~~~~~lPETkgr~~~e 464 (485)
T KOG0569|consen 433 --------------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYE 464 (485)
T ss_pred --------------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence 25688889999999999999999999988766
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=180.91 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHH
Q 008264 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (572)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~ 99 (572)
+...+..++.....+.+.+.+|.++++++|+|+.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 3444555566666677777777789999999999999999999999999999999999998 999999999999999998
Q ss_pred HHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHH
Q 008264 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (572)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (572)
+++++.. +.+.+++.|+++|++.+. .+...++++|.+|+ ++|+++.+++.
T Consensus 83 ~~~~~~~----------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~r~~~~~~~~ 132 (366)
T TIGR00886 83 WAGLAVQ----------------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK-------KIQGTALGLAA 132 (366)
T ss_pred HHHHHhh----------------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH-------hhhhHHHHHHH
Confidence 8876540 466788999999999665 46678999999988 44899999988
Q ss_pred HHHHHHHHHHhhhhhheec----------ccccchhh-hHHHHHH
Q 008264 180 VFVSASSIVAVTCIVYIQD----------NLGWKVGF-GVPAVIM 213 (572)
Q Consensus 180 ~~~~~g~~~g~~~~~~l~~----------~~~w~~~f-~~~~~~~ 213 (572)
...++|..+++.+++.+.. ..+||+.| +..++..
T Consensus 133 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 133 GWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL 177 (366)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence 8888888888777665543 34899999 4334433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-18 Score=172.11 Aligned_cols=396 Identities=11% Similarity=0.055 Sum_probs=258.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHH
Q 008264 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGF 89 (572)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~ 89 (572)
..+++++|.+++-.. .+.-.+..+...+.+.+++++++|+|+.|.+++..+-.+...+..++-|.+.||+ |.|++...
T Consensus 7 ~~k~~~~~~L~~S~~-af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~ 84 (417)
T COG2223 7 RGKRIARRNLWLSTL-AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTIL 84 (417)
T ss_pred ccccchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHH
Confidence 345667777765333 3333444455567888899999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccccc
Q 008264 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (572)
Q Consensus 90 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (572)
+.++..+-.+..+++...+ +.+.+++.+++.|++-|- +.+..++++.+||+ |
T Consensus 85 s~~l~~IP~~~~~~a~~~~--------------------~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~-------~ 136 (417)
T COG2223 85 SMLLLLIPCLGLAFAVTYP--------------------STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPK-------E 136 (417)
T ss_pred HHHHHHHHHHHHHHHccCC--------------------chHHHHHHHHHHhcccce-ehcccccccccCCh-------h
Confidence 9999999999999877322 346789999999998665 68888999999999 5
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhheecccc---cchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHH
Q 008264 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246 (572)
Q Consensus 170 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (572)
++|.+.+++. ..|+|..+...+++.+....+ |+.+-.+..+.+++..+..++..+..++.++..++...
T Consensus 137 ~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~------- 208 (417)
T COG2223 137 KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP------- 208 (417)
T ss_pred hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-------
Confidence 5899999999 899999999999999988888 99998888888887777776665543322221111000
Q ss_pred HHhhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 008264 247 SFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIW 326 (572)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (572)
++ + +.-.++++.....+...
T Consensus 209 ------------------------------~~---~---------------------------~~v~~~~~~W~lsllY~ 228 (417)
T COG2223 209 ------------------------------AQ---L---------------------------KAVFSNKDTWLLSLLYF 228 (417)
T ss_pred ------------------------------hH---H---------------------------HHHhcCcchHHHHHHHH
Confidence 00 0 00000111111111111
Q ss_pred HHHHHHHHhhccchhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHH
Q 008264 327 STGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIG 406 (572)
Q Consensus 327 ~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG 406 (572)
. ...-++.+. ..+..+...+...+. ..++. .....++...+.-|+..++.|| ++..|...+.
T Consensus 229 ~-tFG~Fvgfs-~~l~~~~~~~fg~~~-----~~Ag~--------~a~~f~~~g~l~Rp~GG~LsDR---~Gg~rv~~~~ 290 (417)
T COG2223 229 A-TFGGFVGFS-AYLPMYLVTQFGLSP-----VTAGL--------IAFLFPLIGALARPLGGWLSDR---IGGRRVTLAV 290 (417)
T ss_pred H-HHHHHHHHH-HHHHHHHHHhcCCCh-----hhHHH--------HHHHHHHHHHHHHhccchhhhh---ccchhHHHHH
Confidence 1 111111111 111111111111111 11222 2223333344444555566666 7777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHH
Q 008264 407 LLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS 486 (572)
Q Consensus 407 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 486 (572)
+..++++.+..+.... .++ ...+....+..++...+..++-....+-.+....|+ +.|.+.|+.
T Consensus 291 f~~~~~~~~~l~~~~~-------~~~--------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~v 354 (417)
T COG2223 291 FVGMALAAALLSLFLT-------GFG--------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIV 354 (417)
T ss_pred HHHHHHHHHHHHcccc-------ccc--------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHH
Confidence 8888888777765430 000 112344444444445555555555566677666665 688899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008264 487 GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 552 (572)
Q Consensus 487 ~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~ 552 (572)
...+.+|++.-|...+...+.++ ++...|+.+..+.+++...++..+.+.+
T Consensus 355 ga~G~lGGf~lp~~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 355 GAIGGLGGFFLPLAFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred HHhccccccchhHHHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88999998888877777665552 3566688888889999888888876543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-18 Score=177.20 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=125.6
Q ss_pred HHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhcc
Q 008264 28 FERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (572)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~ 107 (572)
+|...++.....+.+.+++++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++.+.+ .+.
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~-- 85 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP-- 85 (355)
T ss_pred hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc--
Confidence 34433444334445567889999999999999999999999999999999998 99999999988888877665 333
Q ss_pred CCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHH
Q 008264 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187 (572)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 187 (572)
+...+++.|++.|+|.+...+..+.++.|.+|+ +|+++.++++...++|..
T Consensus 86 ---------------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~ 136 (355)
T TIGR00896 86 ---------------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ--------RVGLMTGLYSMALMGGAA 136 (355)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc--------hhhHHHHHHHHHHHHHHH
Confidence 567788999999999999888888888887753 279999999999999999
Q ss_pred HHhhhhhheeccc--ccchhhhHHHHHHHH
Q 008264 188 VAVTCIVYIQDNL--GWKVGFGVPAVIMLL 215 (572)
Q Consensus 188 ~g~~~~~~l~~~~--~w~~~f~~~~~~~~~ 215 (572)
+++.+++.+.+.. +||+.|.+.++..++
T Consensus 137 i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 137 LAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999988877654 399988776554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-17 Score=174.67 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=136.1
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCcchh-hHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY----VGRYRM-IGFG 90 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Grr~~-~~~~ 90 (572)
+|....++...+...+..+.....++.++++ .|.|.++.+.+. ..... ....++.|.++||+ +||||. +..+
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 3445566667777777777777778888665 499999988862 22333 36889999999994 289885 6677
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccc
Q 008264 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (572)
Q Consensus 91 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (572)
.+...++...+++.. | ..+.+.+.+.+++.+++.+...+...++..|++|+ ++
T Consensus 88 ~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~-------~~ 140 (491)
T PRK11010 88 QLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA-------EE 140 (491)
T ss_pred HHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hh
Confidence 777777777776643 0 12677788889999999999999999999999998 44
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhheec-ccccchhhhHHHHHHHHHHHHHH
Q 008264 171 LQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 171 r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
|+++.++...+.++|..+++.+++++.+ ..|||.+|++.++..++..+..+
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998888 46999999998776665544433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=182.65 Aligned_cols=418 Identities=11% Similarity=0.062 Sum_probs=238.3
Q ss_pred cchHHHHHHHhHh-----cCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhcc
Q 008264 35 GFTPNMILYLCRE-----YNMET--TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (572)
Q Consensus 35 ~~~~~l~~yl~~~-----l~~~~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~ 107 (572)
+....+..++++. ...+. .+.+++.+++.++..+++++.|+++|++ |||++++++.+++.+|.++++++.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 4555555555552 22222 3458999999999999999999999998 999999999999999999999988
Q ss_pred CCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHH
Q 008264 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187 (572)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 187 (572)
+..+++++|++.|+|.|+....++.+++|..|. +.|+...+.++...++|..
T Consensus 141 ---------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 141 ---------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGIL 192 (513)
T ss_pred ---------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999988 5599999999999999999
Q ss_pred HHhhhhhheecc-cccchhhhHHHHHHHHHHHHHHhcCC---ceeccCCCCCCchhHHHHHHHHHhhcccCCCCcccchh
Q 008264 188 VAVTCIVYIQDN-LGWKVGFGVPAVIMLLSALSFFLASP---FYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEM 263 (572)
Q Consensus 188 ~g~~~~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (572)
++..++....+. ++||..+.+..+..++..+. ....| ++.-++.+. .+ .+..+..++... +. +.+
T Consensus 193 ~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~---~~-a~~~l~~l~g~~-~~---~~~-- 261 (513)
T KOG0254|consen 193 LGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRL---EE-AKRSLKRLRGLS-PE---DVE-- 261 (513)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCCh---HH-HHHHHHHHhCCC-Cc---chH--
Confidence 997555444332 58998888776665544444 33322 221111111 11 111111111100 00 000
Q ss_pred cccCCCccccCCCchhhhh--hhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-ch
Q 008264 264 YHHGKGSMRLMPSENLRFL--NKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SS 340 (572)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~ 340 (572)
++...+ +........ .....|+++.. ...+|+....+.+..+.......... .+
T Consensus 262 -------------~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~ 318 (513)
T KOG0254|consen 262 -------------VELELLKIKLLVEAEVA--------EGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYS 318 (513)
T ss_pred -------------HHHHHHHHHHHHhhhcc--------cccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeeh
Confidence 000000 000000000 00001111111 11223332222222222221111111 11
Q ss_pred hhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 008264 341 FLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 420 (572)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~ 420 (572)
..+.+..+.+. +. .........+.+...+ +...+.+|++|| +.+..|...+.+++.+++..
T Consensus 319 ~~if~~~g~~~--------~~-~~~~~~~~~v~~~~t~---~~~~lvd~~gRr-------~lll~s~~~m~~~~~~~~~~ 379 (513)
T KOG0254|consen 319 TTIFKSAGLKS--------DT-FLASIILGVVNFLGTL---VATYLVDRFGRR-------KLLLFGAAGMSICLVILAVV 379 (513)
T ss_pred HHHHHhcCCCC--------ch-HHHHHHHHHHHHHHHH---HHHHHHHHhccH-------HHHHHhHHHHHHHHHHHHHH
Confidence 11222222221 11 1111111111111111 123345664444 78888999999988877765
Q ss_pred HHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008264 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLI 500 (572)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~ 500 (572)
......... .........+....+..........|..+.+..|..|.+.|+.+.++....+++.+.+....
T Consensus 380 ~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~ 450 (513)
T KOG0254|consen 380 GVFALYYPN---------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF 450 (513)
T ss_pred HHHhccCCC---------cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 421110000 00112222233333333333344455555677889999999999999999999999888777
Q ss_pred HHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH-HHHHhhhhccccCCCcCcc
Q 008264 501 MNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL-YYLACCKAYGPFKGRVGTA 561 (572)
Q Consensus 501 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~-~~~~~~~~~~~~~~~~~~~ 561 (572)
.+......+ ....|..+++++.+... +.+++.+|+|+++.||.+.
T Consensus 451 ~~~~~~~~~----------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 451 FPFITEALG----------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHHHHHhcc----------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 666542210 12345666666666666 7888899999999887443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-18 Score=177.00 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=115.3
Q ss_pred HHHHHHhHhcC--CChhHHHHHHHHH-----HHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCC
Q 008264 39 NMILYLCREYN--METTAATNIIFIW-----TAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (572)
Q Consensus 39 ~l~~yl~~~l~--~~~~~~~~i~~~~-----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~ 111 (572)
+...++.+++. .++++.+.+.+.. .+...+++++.|+++||+ ||||++..+.++..++.++++++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-- 90 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT-- 90 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence 45555555543 4455555544432 223346789999999998 9999999999999999998887652211
Q ss_pred CCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhh
Q 008264 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (572)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 191 (572)
........+++.|+++|++.+...+..++++.|.+|+ ++|++..++.+.+..+|..+++.
T Consensus 91 -------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~ 150 (394)
T TIGR00883 91 -------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP-------GKRGFYGSFQQVGAPVGLLLAAL 150 (394)
T ss_pred -------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc-------ccchHHHHHHHHHHHHHHHHHHH
Confidence 0000123578899999999999999999999999988 44899999999999999999998
Q ss_pred hhhhee--------cccccchhhhHHHHHHHHHH
Q 008264 192 CIVYIQ--------DNLGWKVGFGVPAVIMLLSA 217 (572)
Q Consensus 192 ~~~~l~--------~~~~w~~~f~~~~~~~~~~~ 217 (572)
++..+. +.++||+.|++.++..+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 766543 35789999988766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-17 Score=172.35 Aligned_cols=445 Identities=10% Similarity=0.022 Sum_probs=247.5
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCcchhhHHH-HH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADS----YVGRYRMIGFG-CF 92 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr----~~Grr~~~~~~-~~ 92 (572)
+++.+....+.-++++-...+++++|+ +++|.+...++++..+..+...+.+|+.|+++|| + ||||.++.+ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 455566666677777766677888876 6799999999999999999999999999999995 7 999998875 55
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
...++.++++++.+...... .+.............+++..+..++.....+...++++|.+|+++ |+++
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~------~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~-----~~~~ 151 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFG------DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA-----RRTR 151 (477)
T ss_pred HHHHHHHHHHhCchhhhhcc------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh-----HHHH
Confidence 56666666666542211000 000000000011334445555666888888899999999999865 2346
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhe--ecc-------------cccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCc
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYI--QDN-------------LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLL 237 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l--~~~-------------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (572)
.++++.+...++|.++|+.++++. .+. .+.+..|++.++..+++.+......++.+..++++.+
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~- 230 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI- 230 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-
Confidence 899999999999999999988764 111 1578899998888877777766665553321111000
Q ss_pred hhHHHHHHHHHhhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 008264 238 PGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELK 317 (572)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (572)
+++++..++ ..++..+.+. + +.-.+.-|
T Consensus 231 -----------------------~~~~~~~~~-----~~~~~~~~~i--------------------~----~~~~~mP~ 258 (477)
T TIGR01301 231 -----------------------NSEAAPPSK-----HGEEAFFGEL--------------------F----GAFKYLPR 258 (477)
T ss_pred -----------------------hhhcccccc-----cchhhhHHHH--------------------H----HHHHHCCH
Confidence 000000000 0000000000 0 00011112
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-chhhhhhhccCCCCCCCCceeccc-ccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCC
Q 008264 318 ALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSG-SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPC 395 (572)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~ 395 (572)
.+.+.+....+..+-|+.+.. .|-++-+..+-..+-. .-....+ -+.........+...+.+..+.++.+|.++|
T Consensus 259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~-~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~-- 335 (477)
T TIGR01301 259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ-GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG-- 335 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 222333332223222232222 2211222111111000 0000000 0011111111111123333344444443322
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc-ccch-hhHHHHHHHHHHHHHHHHhhhheeeeccc
Q 008264 396 QLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV-VQMS-AMWQLPYLVLSGLAMAFNMIGQTEFYYTE 473 (572)
Q Consensus 396 ~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s-~~~l~~~~~l~g~g~~~~~~~~~~~~~~~ 473 (572)
++.-.++.++.++++....+......+....++. ++.. .... .+..+..+.+.|+..+......++++.+.
T Consensus 336 ----k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~ 408 (477)
T TIGR01301 336 ----KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGD---GESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIR 408 (477)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhhcccccccc---ccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence 2334677777777776666544110000000000 0000 0111 35566777889999999998899999999
Q ss_pred CCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 008264 474 LPK--SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 551 (572)
Q Consensus 474 ~P~--~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~ 551 (572)
.|+ +..|..+|+.|++..+.+.+.....+.+....+.+ ....+.+.++.++++.+..+...|+.
T Consensus 409 ~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~--------------~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 409 SSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG--------------NLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------CeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 885 45699999999999999999998777766554311 12346667777777777777766654
Q ss_pred c
Q 008264 552 G 552 (572)
Q Consensus 552 ~ 552 (572)
+
T Consensus 475 ~ 475 (477)
T TIGR01301 475 R 475 (477)
T ss_pred C
Confidence 3
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-17 Score=172.18 Aligned_cols=172 Identities=13% Similarity=0.142 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
..++....+...+.+ ++...+.+.+++++|+++.+.+++.+.+.+++.++.++.|++.||+ |||+++..+.+++.++.
T Consensus 5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 344444555555554 3444455666899999999999999999999999999999999998 99999999999999998
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
+++..+.. ..+++.+++.|++.|+|.|...+..++++.+..|+ ++|++..++.
T Consensus 83 ~l~~~~~~--------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 135 (410)
T TIGR00885 83 FLFWPAAE--------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE-------STATRRLNLA 135 (410)
T ss_pred HHHHHHHh--------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH-------hHHHHHHHHH
Confidence 88654431 11678889999999999999999999999998877 4478889999
Q ss_pred HHHHHHHHHHHhhhhhheec--------------------------ccccchhhhHHHHHHHHHHHH
Q 008264 179 YVFVSASSIVAVTCIVYIQD--------------------------NLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~--------------------------~~~w~~~f~~~~~~~~~~~~~ 219 (572)
+...++|..+||.+++.+.. ..+||++|++.++..++..+.
T Consensus 136 ~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 136 QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876632 136999998877655544333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-17 Score=168.91 Aligned_cols=156 Identities=17% Similarity=0.069 Sum_probs=120.8
Q ss_pred hHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCcchhh-HHHHHHHHHHHHHHHHhhccCCCC
Q 008264 37 TPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY----VGRYRMI-GFGCFTCLLGMVLLWSTTILPGAK 111 (572)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Grr~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 111 (572)
.....+.+.+++|+|.++.+++... .+...+ .++.|.++||+ +||||.+ +.+.++.++....+++..+
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----- 79 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----- 79 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence 3444455566889999999998655 444444 88999999996 4899974 5667777776666665431
Q ss_pred CCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhh
Q 008264 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (572)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 191 (572)
..+.+.+....++.+++.+...++..+++.|.+|+ ++|+++.++...+.++|..+++.
T Consensus 80 ---------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~ 137 (356)
T TIGR00901 80 ---------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLSGS 137 (356)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHHHH
Confidence 12556666777788899999999999999999988 44899999999999999999999
Q ss_pred hhhheecccc--------cchhhhHHHHHHHHHHHHHH
Q 008264 192 CIVYIQDNLG--------WKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 192 ~~~~l~~~~~--------w~~~f~~~~~~~~~~~~~~~ 221 (572)
+++++.+..+ ||.+|++.++..++..+..+
T Consensus 138 l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 138 LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9998887777 99999998887666554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-15 Score=161.70 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=128.4
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCcch-hhHHHHHHHHHHHH
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY----VGRYR-MIGFGCFTCLLGMV 99 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Grr~-~~~~~~~~~~~g~~ 99 (572)
..+...+.+.-....+|.|++++ |+|.++.|++...... .+..++.|+++||+ +|||| .+..+.++.+++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 44445555555557788888755 9999999999766665 68999999999996 26765 78888888887777
Q ss_pred HHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHH
Q 008264 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (572)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (572)
.+++... ..+.+.+++..++.+...+...++..+++.|.+|+ ++|+++.++..
T Consensus 84 ~l~~~~~--------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~~r~~~~~~~~ 136 (402)
T PRK11902 84 AMAFCPP--------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-------EERGAGAAVKV 136 (402)
T ss_pred HHHhcCc--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhhHHHHHHH
Confidence 7766430 11566677777778888999999999999999988 44899999999
Q ss_pred HHHHHHHHHHhhhhhheecc-cccchhhhHHHHHHHHHHH
Q 008264 180 VFVSASSIVAVTCIVYIQDN-LGWKVGFGVPAVIMLLSAL 218 (572)
Q Consensus 180 ~~~~~g~~~g~~~~~~l~~~-~~w~~~f~~~~~~~~~~~~ 218 (572)
.+.++|..+++.+++++.+. +|||..|++.++..++..+
T Consensus 137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 99999999999998888775 5999999997776655444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=158.95 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=132.9
Q ss_pred hHHHHHHHhHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 008264 37 TPNMILYLCREYNMETTA-ATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (572)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 115 (572)
.++..+|+.+++|++++| .+.+.+.++.++.++.+++|+++||+ |.|+++..+.+.+.+..++..+++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~---------- 113 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT---------- 113 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH----------
Confidence 467788999999999999 99999999999999999999999998 999999999999999999999877
Q ss_pred ccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhh
Q 008264 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (572)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 195 (572)
+...+.+.|++.|++.|... +...++..++|+ ++|+++.++...+.++|.++++.++++
T Consensus 114 -------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 114 -------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999 999999999999 559999999999999999999999998
Q ss_pred eecccccchhhhH---HHHHHHHHHHHH
Q 008264 196 IQDNLGWKVGFGV---PAVIMLLSALSF 220 (572)
Q Consensus 196 l~~~~~w~~~f~~---~~~~~~~~~~~~ 220 (572)
...+|||+-+.+ +.....+++++.
T Consensus 173 -l~s~gWr~y~~Ln~Isl~s~~~a~~~a 199 (511)
T TIGR00806 173 -LVTLGWISYSTLNIISLVFMTFSVFLA 199 (511)
T ss_pred -HHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 456799875544 333344444433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-16 Score=156.51 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=135.7
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCC
Q 008264 47 EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESAT 126 (572)
Q Consensus 47 ~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (572)
+++-+.++.|++..+..+...+..++.|.+.||+ |+|-.+++|++++...++++++..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~--------------------- 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN--------------------- 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 4566778999999999999999999999999998 999999999999999999999977
Q ss_pred cchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhh
Q 008264 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF 206 (572)
Q Consensus 127 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 206 (572)
++++++++|.+||+|.+....+..++++|.||++.+ |+++++..-.+..+|-++||.++|.+.+..|++.+|
T Consensus 158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e------r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE------RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh------hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 778899999999999999999999999999999764 999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 008264 207 GVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~ 224 (572)
++.++..++...+-++..
T Consensus 230 lVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLVI 247 (464)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 998888777766654433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-15 Score=160.53 Aligned_cols=150 Identities=12% Similarity=0.109 Sum_probs=101.2
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcchhh-HHHHHHHHHHHHH
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMI-GFGCFTCLLGMVL 100 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grr~~~-~~~~~~~~~g~~~ 100 (572)
..+...+.+....++++.|+++.+|+++.++|.+.....+...+..|+.|+++||. +||||.. .++.+...+...+
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 44555666666677888999999999999999999999999999999999999994 3777744 5565555544444
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
+.. . +. ++ .........++..++.+++.+...++..++..+..++++ +|.+..++..+
T Consensus 96 ~~~-~--~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------~r~~~~~~r~~ 153 (448)
T PRK09848 96 VFW-V--PT-------DW------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ------SRARLGAARGI 153 (448)
T ss_pred HHh-C--cC-------CC------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH------HHHHHHHHHHH
Confidence 321 1 10 00 000122334445667788888888888888887776643 36776666544
Q ss_pred H-----HHHHHHHHhhhhhhe
Q 008264 181 F-----VSASSIVAVTCIVYI 196 (572)
Q Consensus 181 ~-----~~~g~~~g~~~~~~l 196 (572)
+ .+++..++|.+.+..
T Consensus 154 ~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 154 AASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 3 345666667665543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-15 Score=161.26 Aligned_cols=140 Identities=12% Similarity=0.029 Sum_probs=125.0
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCC
Q 008264 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (572)
Q Consensus 46 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (572)
+....+.....+..+.+.++..+++++.|.++||+ |||+++++++++..++.+..+++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~-------------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP-------------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 56677888889999999999999999999999996 999999999999999999999887
Q ss_pred CcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchh
Q 008264 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVG 205 (572)
Q Consensus 126 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~ 205 (572)
+++.+++.|++.|++.++...+...+++|.+++ +.|+.+.++ ......++.+++..++++.. +||+.
T Consensus 170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~-------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP-------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCc-------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 888899999999999999999999999999999 558999999 77788888888888888876 89999
Q ss_pred hhHHHHHHHHHHHH
Q 008264 206 FGVPAVIMLLSALS 219 (572)
Q Consensus 206 f~~~~~~~~~~~~~ 219 (572)
+++..+..++.++.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 237 FWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 99877766655544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-15 Score=159.32 Aligned_cols=170 Identities=10% Similarity=0.119 Sum_probs=119.3
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCcch-hhHHHHHHHHHHHHH
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADS----YVGRYR-MIGFGCFTCLLGMVL 100 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr----~~Grr~-~~~~~~~~~~~g~~~ 100 (572)
.+...+.+..+..+++.|+++.+|+++.++|.+..+..+.-.+..|+.|+++|| + |||| .++++.+..+++..+
T Consensus 18 ~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 18 DTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHHHH
Confidence 344455555566789999999999999999999999999999999999999999 5 8855 555676777666655
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
+....+.+. ......+++..++.+.+.........++.+|+.++++ +|.+..++...
T Consensus 97 ~f~~p~~~~-----------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~------eR~~l~~~r~~ 153 (444)
T PRK09669 97 TFYTPDFGA-----------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR------ERHSLQSWRFA 153 (444)
T ss_pred HHhCCCCCc-----------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH------HHHHHHHHHHH
Confidence 443221100 1234455556666777666777788899999886643 38888888888
Q ss_pred HHHHHHHHHhhhhhheec-------ccccchhhhHHHHHHHHHHHH
Q 008264 181 FVSASSIVAVTCIVYIQD-------NLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 181 ~~~~g~~~g~~~~~~l~~-------~~~w~~~f~~~~~~~~~~~~~ 219 (572)
..++|..+++.+...+.. ..+|+..+.+.+++.++..+.
T Consensus 154 ~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 154 LSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 888888877764432221 346887777766655544443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-15 Score=158.50 Aligned_cols=379 Identities=11% Similarity=0.028 Sum_probs=219.6
Q ss_pred cchH-HHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----cchhhHH
Q 008264 16 LRTL-PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG-----RYRMIGF 89 (572)
Q Consensus 16 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----rr~~~~~ 89 (572)
++.. ..+....+...+. +.....++.++++++|+|.++.+.+.+...+...+-++ .|.++||+ + ||+.+.+
T Consensus 24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~ 100 (468)
T TIGR00788 24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVL 100 (468)
T ss_pred cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHH
Confidence 4433 3444477888888 77777888999999999999999998888888888666 99999998 8 7777777
Q ss_pred HHHHHH-HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccc
Q 008264 90 GCFTCL-LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (572)
Q Consensus 90 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (572)
+.++.. ++...++... .+.....+.+++.+++.+..-.+..++..|..+ +++
T Consensus 101 ~~~l~~~~~~~~l~~~~----------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---- 153 (468)
T TIGR00788 101 SGLLGSAILYGLLPGKV----------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---- 153 (468)
T ss_pred HHHHHHHHHHHhccccc----------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC----
Confidence 766653 2222222111 133444457889999999999999999999999 443
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCcee-ccCCCCCCchhHHHHHHHH
Q 008264 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYV-KSKANTSLLPGLTQVLVAS 247 (572)
Q Consensus 169 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 247 (572)
+.++...++.+...++|..+|+.++|++.+.++|+..|++.+.+.++..+...+. ++.+ ...++.++...
T Consensus 154 ~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~~~~~~~~~~-------- 224 (468)
T TIGR00788 154 SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERRAFVRPRIGTYLE-------- 224 (468)
T ss_pred CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-ccccccccccccccch--------
Confidence 3356677787888889999999999999988899999998877766664333222 2211 00111000000
Q ss_pred HhhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 008264 248 FKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWS 327 (572)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (572)
. .+.....+......+.... ....-+.+.+.+.+.+..
T Consensus 225 -------~-------------~~~~~~~~~~~~~~~~~~~----------------------l~~~l~~~~i~~~l~fif 262 (468)
T TIGR00788 225 -------M-------------NMALLTLGVLANVKVQILG----------------------LRGAIQLLEIAKPLIFIF 262 (468)
T ss_pred -------h-------------hhhhhhhhHHHHHHHHHHH----------------------HHHHHhcHHHHHHHHHHH
Confidence 0 0000000000000000000 000000111211111111
Q ss_pred HHHHHHHhhcc-chhhhhhhccCCCCCCCCceecccc---cchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHH
Q 008264 328 TGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRM 403 (572)
Q Consensus 328 ~~~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i 403 (572)
.. +...... ...+.+... .++ .++.. ......+..+++..+ .+|+.+| .+.++.+
T Consensus 263 l~--~~~~~~~~~~~f~~~~~----~lG----~s~~~~G~~~~~~~v~~i~g~~~--------~~~~~~~---~~~r~~l 321 (468)
T TIGR00788 263 LS--YANLPGASGSVFCATTQ----CLP----GGPSFSGMSKVVGNLGSLCGVGG--------YDRFLKT---FPYRLLF 321 (468)
T ss_pred HH--HhhcCCCCceeEEEEcc----cCC----CCcchhhhHHHHHHHHHHHHHHH--------HHHHHhh---CCHHHHH
Confidence 10 1111111 111111111 121 22222 222223333333332 3444334 6677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHH
Q 008264 404 GIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIAS 483 (572)
Q Consensus 404 ~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 483 (572)
.++.++.+++........ .+.+ ...+ ..+.+++....++.+++.++...+...++.+.+|++.+|+..
T Consensus 322 ~~~~~l~~~~~~~~~~l~-~~~~--~~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~ 389 (468)
T TIGR00788 322 GVTTLLYTLSSLFDLILV-KRWN--LAFG---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVF 389 (468)
T ss_pred HHHHHHHHHHHhCceeee-eccc--cccC---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHH
Confidence 888888777654432111 0000 0000 012234445567788888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 008264 484 TLSGAGLSAANLVASLIMNAVDDIT 508 (572)
Q Consensus 484 g~~~~~~~ig~~lg~~~~~~i~~~~ 508 (572)
|+.++..++|..+++.+.+.+.+..
T Consensus 390 al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 390 ALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998877776544
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-14 Score=143.73 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHH
Q 008264 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (572)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~ 101 (572)
....-.++.....+....+.+-++...|++..|..++.....++..+++...|.++|++ |||+.+........+...+.
T Consensus 82 ~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is 160 (528)
T KOG0253|consen 82 VAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVIS 160 (528)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhh
Confidence 34445555555556667777777888999999999999999999999999999999998 99999998877776666666
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (572)
+.+. ++..+++.|.+.|+|.|+ .|...++-.|..|... |..-.-+. ..
T Consensus 161 ~~sp-----------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~-------r~~~~V~~-~~ 208 (528)
T KOG0253|consen 161 GASP-----------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH-------RWLLTVMS-FF 208 (528)
T ss_pred cCCC-----------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC-------CCcchhHH-HH
Confidence 6555 667799999999999999 8999999999999844 55555544 77
Q ss_pred HHHHHHHHhhhhhheecccccchhhhHHHH
Q 008264 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAV 211 (572)
Q Consensus 182 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~ 211 (572)
+.+|.+....+.-.+..++||||.......
T Consensus 209 waig~v~ea~law~vm~~~gwr~~l~~~~~ 238 (528)
T KOG0253|consen 209 WAIGQVFEALLAWGVMSNFGWRYLLFTSST 238 (528)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 889999998887777888999997666553
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-14 Score=153.87 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=121.3
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
.....++.+++|-++ ...|+.+.+.++.....++.|.++|.+ |||.+++.+.++..+|+++++.++
T Consensus 64 a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 455678889999875 556899999999999999999999998 999999999999999999999877
Q ss_pred ccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee
Q 008264 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (572)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 197 (572)
+...++.+-.+.|+|.|.... ....++|..|. +.|..+..+.....-+....++.++..+.
T Consensus 130 -----------~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~-------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 -----------NMNTFIAGMVLYGVGAGVQEL-AALAISELVPN-------KWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred -----------cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhccc-------chhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 777799999999999888754 55668999988 44766666655555455556676766666
Q ss_pred cccccchhhhHHHHHHHHHHHHH
Q 008264 198 DNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 198 ~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
.+.+|||.|++.++...++++..
T Consensus 191 ~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 191 AHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred cCCCcchHHHHHHHHHHHHHHHH
Confidence 66799999999888766665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-15 Score=159.92 Aligned_cols=172 Identities=10% Similarity=0.093 Sum_probs=118.5
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hccCc-chhhHHHHHHHHHHHHH
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLAD----SYVGR-YRMIGFGCFTCLLGMVL 100 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr-r~~~~~~~~~~~~g~~~ 100 (572)
.+...+.+..+..+++.|+++.+|+++.++|.+..+..+.-++..|+.|+++| |+ || |+.++++...++++..+
T Consensus 15 ~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~l 93 (473)
T PRK10429 15 AFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLFL 93 (473)
T ss_pred hhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHHH
Confidence 34445555666788999999999999999999999999999999999999999 76 99 55666677777777655
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
+....+.+. ......+++..++.+++.........++..|+.++++ +|.+..++...
T Consensus 94 lf~~p~~~~-----------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~------eR~~l~~~~~~ 150 (473)
T PRK10429 94 LFSAHLFEG-----------------TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR------EREQLVPYPRF 150 (473)
T ss_pred HHcCCCCCc-----------------cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH------HHHHHHHHHHH
Confidence 543211110 1123345555667788888888899999999886543 48888888777
Q ss_pred HHHHHHHHHhhhhhhe----e---cccccchhhhHHHHHHHHHHHHHH
Q 008264 181 FVSASSIVAVTCIVYI----Q---DNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 181 ~~~~g~~~g~~~~~~l----~---~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
..++|..+.+.+...+ . +..+|+....+.++..++..+..+
T Consensus 151 ~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 151 FASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777766655443322 1 122566666655555444443333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=150.03 Aligned_cols=118 Identities=14% Similarity=0.005 Sum_probs=106.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcc
Q 008264 49 NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128 (572)
Q Consensus 49 ~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (572)
+.+..-+|.+-+.|.+...+.++..|.++||+ |||.+++.|++..++...+.+.|.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~----------------------- 119 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR----------------------- 119 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 34556789999999999999999999999999 999999999999999888898887
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec
Q 008264 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (572)
Q Consensus 129 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 198 (572)
+...++++|++.|+.-|-. ....++++|.+++ +.|+.+++.......+|.++||.+++++..
T Consensus 120 ~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~se-------k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSE-------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHHHhhhhccCch-HHHHHHHHhhcCh-------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 6766777899999998875 7778999999999 448999999999999999999999999987
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-14 Score=148.16 Aligned_cols=176 Identities=12% Similarity=-0.085 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHH--HHHHHHHHHHHHHH-HHHhhhccCcchhhHHHHHHH-
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII--FIWTAATNFLPIVG-ALLADSYVGRYRMIGFGCFTC- 94 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~--~~~~~~~~~~~~~~-G~laDr~~Grr~~~~~~~~~~- 94 (572)
...+....+...+.+....+.+|.|++ +.|.|.++.|.+. ........+.+|+. ++.+||+ ||||..++.+.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 344556777777887777788888886 4599999999973 45566666666666 6689997 9999976664332
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.+....++... +. ......++....+.++..+..-+...++..|..++ ++++..
T Consensus 81 ~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-------~~~~~~ 134 (390)
T TIGR02718 81 SACLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG-------RTLAKG 134 (390)
T ss_pred HHHHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhhHH
Confidence 21222222111 00 01122233344445566666666666666665554 346777
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
.+....+..+|..+|+...+++.+.+|||.+|++.++..++..+..+.
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 777778889999999988889988899999999988776655554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-14 Score=145.10 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=119.0
Q ss_pred cchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008264 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (572)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 114 (572)
...-.+.+.+++.++++..|++++..++..++.+++++.|++.+|+ |+|+.++.|+.++++|..+.+=+++
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~-------- 100 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS-------- 100 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh--------
Confidence 3446778888999999999999999999999999999999999998 9999999999999999988864331
Q ss_pred cccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh
Q 008264 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (572)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 194 (572)
..++..++++.++.|.|.+....+++++++...++++. ..-.++.+....+|+.+||.+++
T Consensus 101 ------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a-------~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 101 ------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA-------AFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred ------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH-------HHHHHHHHHhhhhHHHHHHHHHH
Confidence 22788899999999999999999999999999998543 44567788889999999999988
Q ss_pred heec
Q 008264 195 YIQD 198 (572)
Q Consensus 195 ~l~~ 198 (572)
++..
T Consensus 162 ~lil 165 (422)
T COG0738 162 SLIL 165 (422)
T ss_pred HHHH
Confidence 7765
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-13 Score=144.71 Aligned_cols=384 Identities=16% Similarity=0.130 Sum_probs=208.9
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
....++.-+.+-.+.++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||...+||++.+..++..+......
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555556889999876 5899999999999999999999999999999984467777776666655554444
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
.++ +.+.+++..++..+......|...++..+...++ +.-++....-+
T Consensus 87 ~~~-----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~---------~~~YG~iRlwG 134 (400)
T PF03825_consen 87 FSS-----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR---------GKDYGRIRLWG 134 (400)
T ss_pred Hhc-----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc---------cCCCCcchhhh
Confidence 433 4555666677777777888888888888776642 23333333344
Q ss_pred HHHHHHHhhh-hhheeccc---ccchhhhHHHHHHHHHHHHHHhcCCceeccC-CCCCCchhHHHHHHHHHhhcccCCCC
Q 008264 183 SASSIVAVTC-IVYIQDNL---GWKVGFGVPAVIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVASFKNRRTKLPT 257 (572)
Q Consensus 183 ~~g~~~g~~~-~~~l~~~~---~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (572)
++|..++... ++.+.... +..+.+++.+...++... +.+..|+.+.++ .+++..+.
T Consensus 135 SiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~~~~~~~~------------------ 195 (400)
T PF03825_consen 135 SIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAG-FALFLPKTPPKRSAKESVKKL------------------ 195 (400)
T ss_pred hHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH-HHHhCCCCccccccCCCcccc------------------
Confidence 5555554322 12222222 233455555443322221 112222211110 00000000
Q ss_pred cccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008264 258 QATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTIS 337 (572)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (572)
...+.. +-.++.+...-++..+.........++
T Consensus 196 ----------------------~~~~~~-------------------------~llk~~~~~~Fll~~~l~~~~~~~~~~ 228 (400)
T PF03825_consen 196 ----------------------LGLDAL-------------------------KLLKNPRFLVFLLAAFLIGISHAAYYT 228 (400)
T ss_pred ----------------------cchHHH-------------------------HHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000111111111111111222222222
Q ss_pred cchhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 008264 338 QSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAW 417 (572)
Q Consensus 338 q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~ 417 (572)
..+..+....+.... .... ..-...+.|...-...+|+.+| .+.++.+.++.+..++=+...
T Consensus 229 f~~~yl~~~gg~~~~----------~~g~-----~~~l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 229 FFSIYLQELGGYSGS----------TIGI-----LWALGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHHcccchhh----------HHHH-----HHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence 222111111111111 0111 1111222333333334555555 777788888888887776666
Q ss_pred HHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHH-HHHHHHH
Q 008264 418 AIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG-LSAANLV 496 (572)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~ig~~l 496 (572)
+... ++ .......+....++.|+..++...+...++.+.+|++.|++++++++.. ..+|+.+
T Consensus 291 a~~~----------------~~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i 353 (400)
T PF03825_consen 291 AYFS----------------DP-WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI 353 (400)
T ss_pred HHhc----------------CC-cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence 6552 00 0011112233345789999999999999999999999999999998875 5699999
Q ss_pred HHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008264 497 ASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 550 (572)
Q Consensus 497 g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~ 550 (572)
|..+.+.+.+..+.++. -.+..++.+.+++.++..++.++..|+
T Consensus 354 G~~igG~l~~~~g~~~~----------~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 354 GSLIGGWLYDAFGARGM----------FDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHhcchhh----------hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99988777754431110 113345666666666666666666543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-20 Score=201.85 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHH
Q 008264 53 TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMP 132 (572)
Q Consensus 53 ~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (572)
.+.+++.+...++..++++++|+++||+ |||+++..+.++..++.++.+++... .+.+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~ 104 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY--------------------NNFWM 104 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc--------------------ccccc
Confidence 4568899999999999999999999998 99999999999999999999876511 15677
Q ss_pred HHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec---ccccchhhhHH
Q 008264 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---NLGWKVGFGVP 209 (572)
Q Consensus 133 l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~w~~~f~~~ 209 (572)
+.++|+++|+|.|+..+....++.|..|+ +.|+...++.+....+|..++..+...+.. ..+||+.+.+.
T Consensus 105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~-------~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 177 (451)
T PF00083_consen 105 LLIGRFLIGFGIGGAYVVSPIYISEIAPP-------KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG 177 (451)
T ss_pred ccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999988 558999999999999999988877554433 24599999887
Q ss_pred HHHHHHH
Q 008264 210 AVIMLLS 216 (572)
Q Consensus 210 ~~~~~~~ 216 (572)
++..++.
T Consensus 178 ~~~~l~~ 184 (451)
T PF00083_consen 178 AIPSLLV 184 (451)
T ss_pred ccccccc
Confidence 7665433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=154.14 Aligned_cols=354 Identities=13% Similarity=0.091 Sum_probs=219.2
Q ss_pred HHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hccCcchhh-HHHHHHHHHHHHHHHH
Q 008264 29 ERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLAD----SYVGRYRMI-GFGCFTCLLGMVLLWS 103 (572)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Grr~~~-~~~~~~~~~g~~~~~~ 103 (572)
..+.+.....++..|+++.+|+++..++.+..+..+..++..|+.|+++| |+ ||||-. +.|....+++.+++..
T Consensus 13 ~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~llf~ 91 (428)
T PF13347_consen 13 YNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLLFS 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHhhc
Confidence 33444445568899999999999999999999999999999999999999 77 976654 4677788887777764
Q ss_pred hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHH
Q 008264 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (572)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (572)
.. |. + .........+.+..++..++......+..++..|..+++++ |.+..++......
T Consensus 92 ~~--p~-------~------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~------R~~l~~~~~~~~~ 150 (428)
T PF13347_consen 92 PP--PA-------G------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE------RTRLSSWRMIFSM 150 (428)
T ss_pred cc--cc-------h------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh------hhhHHHHHHHHHH
Confidence 31 10 0 00011333456667777899999999999999999887543 8888888888888
Q ss_pred HHHHHHhhhhhheeccc-------ccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCC
Q 008264 184 ASSIVAVTCIVYIQDNL-------GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (572)
Q Consensus 184 ~g~~~g~~~~~~l~~~~-------~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (572)
+|..+...+.+.+.+.. +|++...+.++..++..+......++..++.+++++ +.
T Consensus 151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~---------------~~--- 212 (428)
T PF13347_consen 151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK---------------KI--- 212 (428)
T ss_pred HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc---------------cc---
Confidence 88876665555443211 588888777776666555555444431000000000 00
Q ss_pred CcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008264 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI 336 (572)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (572)
++.+ .++ ...++ |.+...+.. ..+.+...
T Consensus 213 -----------------------~~~~--------------------~~~----~~~~n-r~~~~l~~~---~~~~~~~~ 241 (428)
T PF13347_consen 213 -----------------------SLRD--------------------SLR----SLFRN-RPFRILLLA---FFLQWLAF 241 (428)
T ss_pred -----------------------cccc--------------------chh----hhccc-chHHHHHHH---HHHHHhhh
Confidence 0000 000 00011 112111111 11111111
Q ss_pred cc--chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHH
Q 008264 337 SQ--SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASM 414 (572)
Q Consensus 337 ~q--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~ 414 (572)
.. .....+....+.... ..+.+.....+..++..++ ..++.+|+++ ++.+..+..+.+++.
T Consensus 242 ~~~~~~~~y~~~~vl~~~~------~~~~~~~~~~~~~~v~~~~----~~~l~~r~gk-------~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 242 ALMNTFLPYYFTYVLGNEG------LISIFMLIFFVASIVGSPL----WGRLSKRFGK-------KKVYIIGLLLAALGF 304 (428)
T ss_pred hhhhhHHHHHHHHHhcCch------hhHHHHHHHHHHHHHHHHH----HHHHHHHccc-------eeehhhhHHHHHHHH
Confidence 11 222122222222111 0122222333333444443 3333455433 367888888888887
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCC-------hhhHHHHHHHHH
Q 008264 415 TAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSG 487 (572)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~ 487 (572)
++..+.. ..+.+++.+..++.+++.+...+...+...|..+ ++..|..+|+++
T Consensus 305 ~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~ 364 (428)
T PF13347_consen 305 LLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS 364 (428)
T ss_pred HHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence 7776653 1366777788889999999888888888888776 355799999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcC
Q 008264 488 AGLSAANLVASLIMNAVDDITKR 510 (572)
Q Consensus 488 ~~~~ig~~lg~~~~~~i~~~~~~ 510 (572)
+...++..+++.+.+.+....|.
T Consensus 365 ~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 365 FFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999998888766653
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=148.31 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=102.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcch
Q 008264 50 METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQ 129 (572)
Q Consensus 50 ~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (572)
.++...+.+..+..++..+++++.||++||+ |||+++...++++.+++++++++...+ ...+-
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~----------------~~~~~ 143 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTT----------------SPLGV 143 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCC----------------CCcch
Confidence 5667788999999999999999999999998 999999999999999999777654222 22245
Q ss_pred hHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHH----HHHHhhhhhheec-------
Q 008264 130 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS----SIVAVTCIVYIQD------- 198 (572)
Q Consensus 130 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g----~~~g~~~~~~l~~------- 198 (572)
.+.+.+.|+++|+|.|+-.|.+.+..+|..-+ ++|++..+........| ++++-++...+-.
T Consensus 144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~-------~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~ 216 (538)
T KOG0252|consen 144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANK-------KTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPST 216 (538)
T ss_pred hhHHHHHHHHhhccccCCCcchHHHhhhhhhh-------ccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCC
Confidence 67789999999999999999999999987655 44666666544444444 4444433332211
Q ss_pred --c--cccchhhhHHHHH
Q 008264 199 --N--LGWKVGFGVPAVI 212 (572)
Q Consensus 199 --~--~~w~~~f~~~~~~ 212 (572)
+ .-||..|.+.++.
T Consensus 217 ~~~ld~vWRl~~glg~vp 234 (538)
T KOG0252|consen 217 YPHLDGVWRIIFGLGAVP 234 (538)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 1 2388888766544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-15 Score=163.89 Aligned_cols=199 Identities=15% Similarity=0.243 Sum_probs=148.6
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
+|.+++.+....+-+..+.+........++++++++..+.|++.+.+.+++.++.++.|+++||+ ||||++.++.++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~ 109 (633)
T TIGR00805 31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG 109 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence 44443444445555555667777777888999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhccCCC----------------CCCCcccc-cC---------CccCCC--cchhHHHHHHHHHHHHhcccc
Q 008264 96 LGMVLLWSTTILPGA----------------KPPACDQL-RN---------GCESAT--WSQLMPLYFAFGLMSLGSGGI 147 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~----------------~~~~~~~~-~~---------~~~~~~--~~~~~~l~~~~~l~g~g~g~~ 147 (572)
+|++++++.+.+..- .+..|..= .+ +|.... ...+..++++|+++|+|.+..
T Consensus 110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~ 189 (633)
T TIGR00805 110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI 189 (633)
T ss_pred HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence 999998876421100 01122100 00 000000 113567889999999999999
Q ss_pred chhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheeccc----------------------ccchh
Q 008264 148 RSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL----------------------GWKVG 205 (572)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------~w~~~ 205 (572)
.+...+++.|.+|+ ++|+...++++....+|..+|+++++++.+.+ +|+..
T Consensus 190 ~~~~~~~i~d~~~~-------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~ 262 (633)
T TIGR00805 190 FPLGISYIDDFAKS-------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG 262 (633)
T ss_pred hhcCchhhhccCCc-------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence 99999999999998 44899999999999999999999998876532 26777
Q ss_pred hhHHHHHHHHHHHHHHh
Q 008264 206 FGVPAVIMLLSALSFFL 222 (572)
Q Consensus 206 f~~~~~~~~~~~~~~~~ 222 (572)
|++.+++.++..+.++.
T Consensus 263 Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 263 FLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88877666655444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-14 Score=152.63 Aligned_cols=416 Identities=14% Similarity=0.109 Sum_probs=240.1
Q ss_pred HHHHHHHHhhcchH---HHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHH
Q 008264 25 NEAFERMATVGFTP---NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (572)
Q Consensus 25 ~~~~~~~~~~~~~~---~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~ 101 (572)
..++-++..+++.. .+-..++++++.+..+++|+.++......+..|+.+.+.||+ |.|++.+.|.++..+|.++.
T Consensus 50 a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~ls 128 (509)
T KOG2504|consen 50 ASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLS 128 (509)
T ss_pred hHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHH
Confidence 34444444444432 345566789999999999999999999999999999999998 99999999999999999999
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHH-HHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFA-FGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
++++ +.+.+++. =++.|+|.|+.......++..+|++ +|+.+.++-..
T Consensus 129 sF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k--------kR~lA~Gia~~ 177 (509)
T KOG2504|consen 129 SFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK--------KRALATGIAVS 177 (509)
T ss_pred HHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH--------HHHHHHhhhhc
Confidence 9988 55555444 6678899999999999999977764 48999999888
Q ss_pred HHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCccc
Q 008264 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQAT 260 (572)
Q Consensus 181 ~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (572)
+..+|..+=|.+..++.+.+|||..+++.+.+.+-.++.-...+|...+.++. ...+.. +.....+. ..
T Consensus 178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~--------~~~~~~~~-~~ 246 (509)
T KOG2504|consen 178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLR--------NSAASVES-TP 246 (509)
T ss_pred cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhc--------cccccccc-cc
Confidence 88998888888888999999999999988777765555555555432222221 000000 00000000 00
Q ss_pred chhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCC----CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008264 261 EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSL----CTVEQVEELKALIKVIPIWSTGIMIAVTI 336 (572)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (572)
................ ..-......... ++.....+.+. ++....++. .++.+.....+..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~ll~~~----~fl~~~~~~~~~~~g~ 314 (509)
T KOG2504|consen 247 KPVELRISERDSGLKK--LSLSNLATLKRG------PDKWRNSPLQAFLSMLDLSLLKDP----KFLLLALSNLFAYLGF 314 (509)
T ss_pred cccccccccCCCCCCc--ccccchhhhhhC------CccccccchhhhhhhhhHHHHcCc----hHHHHHHHHHHHHHHH
Confidence 0000000000000000 000000000000 00000000000 001111111 1222222222222222
Q ss_pred ccchhhh--h-hhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 008264 337 SQSSFLV--L-QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTAS 413 (572)
Q Consensus 337 ~q~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~ 413 (572)
..+.+.+ + .....+... .+...+...+.-+++ +++. ..+.+++. ........+++++.+++
T Consensus 315 ~~p~~~l~~~~~~~g~~~~~-------aa~l~Siigi~~i~g-----Ri~~---G~laD~~~-~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 315 NVPFVYLPSYAKSLGLSSND-------AAFLLSIIGVSDIIG-----RIIL---GLLADKPG-IRALVLFLLTLLIAGLA 378 (509)
T ss_pred HHHHHHHHHHHhhcCCChhh-------hHHHHHHHHHhhhhh-----hhhh---hhhcCccc-cchHHHHHHHHHHHHHH
Confidence 2111101 0 111112111 111222222222222 2222 22223320 22334456666666666
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHH
Q 008264 414 MTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAA 493 (572)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig 493 (572)
.++..... +++.++..-+++|+..+...........+..+.+.-..+.|+..+++.++
T Consensus 379 ~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~ 436 (509)
T KOG2504|consen 379 RLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIG 436 (509)
T ss_pred HHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHH
Confidence 64554433 56667777788888888777777777888899999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008264 494 NLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 548 (572)
Q Consensus 494 ~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~ 548 (572)
..+|+.+.+.+.+.+ ++|+..|.+.++..+++....++..
T Consensus 437 ~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 437 ALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 999998876554433 2356667778877777776665555
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-12 Score=139.87 Aligned_cols=157 Identities=13% Similarity=0.081 Sum_probs=121.5
Q ss_pred hcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008264 34 VGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPP 113 (572)
Q Consensus 34 ~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 113 (572)
|++. .....+++++|++..+.+++.+.... ...+.+++|+++||+ |||+++.++.+++.+|+++++++.+...
T Consensus 44 y~fs-v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~i---- 116 (591)
T PTZ00207 44 YAFN-LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEVI---- 116 (591)
T ss_pred HHHH-HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence 4443 45567899999999999998877443 445677889999998 9999999999999999999998631000
Q ss_pred CcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHH-Hhhh
Q 008264 114 ACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV-AVTC 192 (572)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~ 192 (572)
..+.+.+++.|++.|+|.+...+.....+.++||+ +|+++.++.....++|+.+ +++.
T Consensus 117 -------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~--------~RG~a~Gi~~~~~gLGsaI~~~l~ 175 (591)
T PTZ00207 117 -------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS--------NRGAVVAIMKTFTGLGSAILGSIQ 175 (591)
T ss_pred -------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12688899999999999999989999999999974 2899999999999999975 5655
Q ss_pred hhheecccccchhhhHHHHHHHHHHHHH
Q 008264 193 IVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 193 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
.+++. .+|+..|++.++..++..++.
T Consensus 176 ~~l~~--~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 176 LAFFS--DNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHH--HhHHHHHHHHHHHHHHHHHHH
Confidence 55554 357777777666555444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-12 Score=140.59 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=126.4
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccC
Q 008264 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (572)
Q Consensus 45 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (572)
.+++++...+-+.+.+++.++++++.+++|++.||+ .-.+.+....+.+.+-.++.+...
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------- 132 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------- 132 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 357888999999999999999999999999999998 877777777666655554544444
Q ss_pred CCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee------c
Q 008264 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ------D 198 (572)
Q Consensus 125 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~ 198 (572)
+.+.+++.|+++|+..+..+|+...+++.+|.+ ++|+..+++++...++|.++|.++...+. .
T Consensus 133 ----s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~-------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 133 ----SFPGLIALRFLLGLFESGGWPGVVAILGNWYGK-------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred ----hhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh-------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 677799999999999999999999999999999 44899999999999999999999887652 3
Q ss_pred ccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 199 NLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 199 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
..||||.|++.+++.++..++.++..|.
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecC
Confidence 4699999999998877666665555443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-12 Score=130.54 Aligned_cols=338 Identities=13% Similarity=0.103 Sum_probs=225.9
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHh
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~ 104 (572)
+.+=-|...-++ ..+..-+++++|+|.+++|.+.+.-.+...+.++++.+++.|+ |.+|.+..++++.++|..+=...
T Consensus 20 ia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~ 97 (395)
T COG2807 20 IAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG 97 (395)
T ss_pred HHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc
Confidence 334445554444 4555667889999999999999999999999999999999998 99999999999999988765431
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 184 (572)
+...++.+-.+.|.|.+......++++-+.||++ -+..+++|....++
T Consensus 98 ------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~--------~~~mtglYs~sl~~ 145 (395)
T COG2807 98 ------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR--------VGLMTGLYSTSLGA 145 (395)
T ss_pred ------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc--------hhhHHhHHHHHHHH
Confidence 4566889999999999999999999999999973 48889999999999
Q ss_pred HHHHHhhhhhheeccc-ccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcccchh
Q 008264 185 SSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEM 263 (572)
Q Consensus 185 g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (572)
|+.+++.+...+.++. |||..+..-+...+++++.++.-..+.+.....+ .
T Consensus 146 ~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~------------------~---------- 197 (395)
T COG2807 146 GAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIAT------------------K---------- 197 (395)
T ss_pred HHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccc------------------c----------
Confidence 9999999988887776 7999998888887777777654422211000000 0
Q ss_pred cccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhh
Q 008264 264 YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFL 342 (572)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~~~ 342 (572)
.......|+ +...+...+.+-.....+|..+.+ +.+.
T Consensus 198 ----------------------------------~~~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~il 235 (395)
T COG2807 198 ----------------------------------LVSVRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAIL 235 (395)
T ss_pred ----------------------------------ccccccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 000011121 111111122222334555555555 4442
Q ss_pred hhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhh-hhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008264 343 VLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLA-SKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 421 (572)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~ 421 (572)
...+++... ++.+.++..+..+... +..|.. +|. .+.+........++.++++.+.+..
T Consensus 236 --i~~G~sa~~-------aG~llsl~~l~~~~~~-----ll~P~la~R~------~n~r~~~~~~~~~~l~G~~G~~~~P 295 (395)
T COG2807 236 --IDRGLSAAE-------AGSLLSLMQLAQLPTA-----LLIPLLARRS------KNQRPLVVLALLLMLVGLVGLLLAP 295 (395)
T ss_pred --HHcCCCHHH-------hhhHHHHHHHHHHHHH-----HHHHHHHHHh------cccchHHHHHHHHHHHHHHHHHHhh
Confidence 233333322 2222222222222221 233333 332 2333556666667777766665543
Q ss_pred HHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeeccc-CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008264 422 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE-LPKSMSSIASTLSGAGLSAANLVASLI 500 (572)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~-~P~~~rg~~~g~~~~~~~ig~~lg~~~ 500 (572)
.+..++| .+++|+|.+..+|....++... ..++..+..+|+.+..+.+=..+||.+
T Consensus 296 -------------------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l 352 (395)
T COG2807 296 -------------------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL 352 (395)
T ss_pred -------------------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence 0112222 4788999888888888877754 556678889999999999999999999
Q ss_pred HHHhhhhhc
Q 008264 501 MNAVDDITK 509 (572)
Q Consensus 501 ~~~i~~~~~ 509 (572)
++.+.|.+|
T Consensus 353 ~G~lhDa~g 361 (395)
T COG2807 353 FGFLHDATG 361 (395)
T ss_pred HhHHHHhcC
Confidence 999888775
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=136.55 Aligned_cols=386 Identities=9% Similarity=0.020 Sum_probs=213.3
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH--
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC-- 94 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~-- 94 (572)
+..+......++.-+++-...++.+.+++++.|+|.++.|.+.++..+...+.+|+.|.++||. |.||-+++.+.+.
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3445455555555555556679999999999999999999999999999999999999999997 9777655443322
Q ss_pred HHHHHHH-HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHH----HHhccccchhhhhhhhcccCCCCCccccc
Q 008264 95 LLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLM----SLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (572)
Q Consensus 95 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~----g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (572)
..+-+.. .+..-+.. | ++++-++- ++......|..-+++.+.- +
T Consensus 86 l~~pff~~v~~pll~~-------------------n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s---------r 134 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQS-------------------N---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVS---------R 134 (412)
T ss_dssp TCHHHHHHTHHHHHHT-------------------T----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHHHHHH-------------------H---HHHHHHHHHHHHHHHHcccchHHHHHHHHHH---------H
Confidence 2222222 22110000 1 22233332 3333344444444444321 1
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHh
Q 008264 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249 (572)
Q Consensus 170 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (572)
+.+-=++-....+++|..++..++|++.+ .+-+..|++.....++..++.+..++..+++.+..+.
T Consensus 135 ~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~------------- 200 (412)
T PF01306_consen 135 RNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA------------- 200 (412)
T ss_dssp HHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-------------
T ss_pred HhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-------------
Confidence 23334455566678888888888888865 4556788876665544444444433221111000000
Q ss_pred hcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008264 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTG 329 (572)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (572)
.. ...+..+..|.. +..+ .|+++.++.+....
T Consensus 201 -----------------~~-----~~~~~~~~~~~~-------------------------~l~k-~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 201 -----------------LG-----AKKDKVSLKDVL-------------------------SLFK-MRNFWFFVLFVIGV 232 (412)
T ss_dssp -----------------SS-----S------HHHHH-------------------------HHTT-SHHHHHHHHHHHHH
T ss_pred -----------------cc-----cCCCCCcHHHHH-------------------------HHhc-chhHHHHHHHHHHH
Confidence 00 000000000000 0011 12333333333333
Q ss_pred -HHHHHhhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHH
Q 008264 330 -IMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGL 407 (572)
Q Consensus 330 -~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~ 407 (572)
..+....+| +.++.. ..+..- .....+...+.+.+.+=.+ .-...+++.+| .++++.+.++.
T Consensus 233 ~~~Y~vfdqqf~~y~~~---~f~~~~-----~g~~~~G~l~s~~v~~E~~-----~m~~~p~li~r---ig~k~~Lllag 296 (412)
T PF01306_consen 233 AAIYDVFDQQFPIYFAS---FFQSAG-----QGNQMYGYLWSVQVFLEAL-----MMFFSPWLINR---IGAKNLLLLAG 296 (412)
T ss_dssp HHHHHHHHHHHHHHHHH---TSSSHH-----HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH---H-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---Hhcccc-----cChhHHhHHHHHHHHHHHH-----HHHHHHHHHHh---cChHhHHHHHH
Confidence 445555555 444221 111110 1133344444443332222 22222333333 66667787777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHH-
Q 008264 408 LFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS- 486 (572)
Q Consensus 408 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~- 486 (572)
.++.+=....++.+ +++++.+.-.+.++-..+...+..-|+.+.+|++..++...+.
T Consensus 297 ~i~~iRi~~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~ 354 (412)
T PF01306_consen 297 VIMAIRIIGSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGF 354 (412)
T ss_dssp HHHHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Confidence 77777666666554 6677777778899999999999999999999999999998885
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008264 487 GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 550 (572)
Q Consensus 487 ~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~ 550 (572)
++..++|+.+.+.+.+.+.+..| ++..|++++++.++..++..+..++
T Consensus 355 ~~~~~~~~~i~s~~~G~lyd~~G----------------~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 355 QFAKQIGIIILSPLAGYLYDRIG----------------FQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHhhHhhcC----------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence 67888899888888777765442 4567888888777666666555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=139.75 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=121.0
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcchhhH-HHHHHHHHHHHHH
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMIG-FGCFTCLLGMVLL 101 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~-~~~~~~~~g~~~~ 101 (572)
.+...+.+..+..++..|+++.+|+++..+|.+....-+.-++.-|+.|+++||. +||||-.+ ++.+.++++.+++
T Consensus 18 ~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll 97 (460)
T PRK11462 18 DAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA 97 (460)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH
Confidence 3444555555567899999999999999999999999999999999999999972 49876554 5667777776665
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (572)
......+. ......+.+.-++..++.........++.+|+.++.+ +|.+..++...+
T Consensus 98 f~~p~~s~-----------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~------eRt~l~s~r~~~ 154 (460)
T PRK11462 98 YSTPDLSM-----------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT------QRISLQSWRFVL 154 (460)
T ss_pred HhCCCCCc-----------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH------HHHHHHHHHHHH
Confidence 53221000 1123345555666788888888899999999988754 499999999999
Q ss_pred HHHHHHHHhhhhhheecc-------cccchhhhHHHHHHHHHHHH
Q 008264 182 VSASSIVAVTCIVYIQDN-------LGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 182 ~~~g~~~g~~~~~~l~~~-------~~w~~~f~~~~~~~~~~~~~ 219 (572)
.++|..+++.+...+... .+|+....+.++..+++...
T Consensus 155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 999888877664433222 25666655555544444433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.5e-11 Score=126.27 Aligned_cols=363 Identities=14% Similarity=0.085 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH-HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHH
Q 008264 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF-TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLY 134 (572)
Q Consensus 56 ~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (572)
+..+++..+..++..|+-|-++|+. |+||-++.... +..+....+.+.. .++++...
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~---------------------~~~~~~~~ 130 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS---------------------PGQWWLAL 130 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC---------------------cchHHHHH
Confidence 5667888888999999999999998 88777766544 4445555665543 11444445
Q ss_pred HHHHHHHHhccccchhhhhhhhcccCCCCCccc-------------------ccchhhhHHHHHHHHHHHHHHHhhhhhh
Q 008264 135 FAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKS-------------------KGALQSYFSWYYVFVSASSIVAVTCIVY 195 (572)
Q Consensus 135 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-------------------~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 195 (572)
+..++.-++.+......++++.|..++++..++ ...|++..+.-+...++|+++.-++.-.
T Consensus 131 ~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~ 210 (477)
T PF11700_consen 131 VLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLL 210 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 555556678888889999999999888664211 0113777777777788888877766433
Q ss_pred ee-c-------ccccchhhhHHHHHHHHHHHHHHhcCCceeccC--CCCC-CchhHHHHHHHHHhhcccCCCCcccchhc
Q 008264 196 IQ-D-------NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK--ANTS-LLPGLTQVLVASFKNRRTKLPTQATEEMY 264 (572)
Q Consensus 196 l~-~-------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
+. . ....|..+.+.++..++..+-.++..|+.++.+ +... ....-.+.++..+|+
T Consensus 211 ~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~-------------- 276 (477)
T PF11700_consen 211 LVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE-------------- 276 (477)
T ss_pred HHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH--------------
Confidence 21 1 223577777777664433333333332221111 1100 011111111111111
Q ss_pred ccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 008264 265 HHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVL 344 (572)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 344 (572)
..+.|.+.+++.- ..++--.. .+....
T Consensus 277 ------------------------------------------------~~~~~~~~~fLia---~~l~~dg~--~ti~~~ 303 (477)
T PF11700_consen 277 ------------------------------------------------IRKLRQLFLFLIA---YFLYSDGV--NTIISF 303 (477)
T ss_pred ------------------------------------------------HHhChHHHHHHHH---HHHHHHHH--HHHHHH
Confidence 1111222221111 11111111 111111
Q ss_pred hhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCch--HHHHHHHHHHHHHHHHHHH--H
Q 008264 345 QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLK--LRMGIGLLFSTASMTAWAI--V 420 (572)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~--~~i~iG~~~~~i~~~~~~~--~ 420 (572)
...+....++ ++...+..+..+ ..+...+.+.....+.+| ++++ +.+.+...+..+..++..+ .
T Consensus 304 ~~i~a~~~lg----~s~~~l~~~~l~-~~i~a~~Ga~~~g~l~~r-------~g~k~~~~l~~~l~~~~~i~~~g~~G~~ 371 (477)
T PF11700_consen 304 AGIYATEVLG----MSTTQLIVFGLV-VQIVAIIGALLFGWLQDR-------FGPKTKRTLLISLILWIIIPLYGLFGFW 371 (477)
T ss_pred HHHHHHHhcC----cCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------hCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112222222 222222222111 111222222222222333 4444 4444444444222222111 1
Q ss_pred HHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008264 421 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLI 500 (572)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~ 500 (572)
.. ..| ..+.+.+.+.-++.|+..+-..+..-++..+..|++..+...|++.+.+.....+||.+
T Consensus 372 ~~-------~~g---------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll 435 (477)
T PF11700_consen 372 PS-------FFG---------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLL 435 (477)
T ss_pred hc-------ccC---------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 10 000 12344455555678899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008264 501 MNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 550 (572)
Q Consensus 501 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~ 550 (572)
++.+.+.++. ...-++.+.++.++++++.+.+..+
T Consensus 436 ~g~i~~~tg~---------------~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 436 FGLITDATGS---------------QRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHhCC---------------chhHHHHHHHHHHHHHHHHhhccch
Confidence 9999877741 2233566677777777766555433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-11 Score=127.14 Aligned_cols=358 Identities=15% Similarity=0.129 Sum_probs=213.4
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcch-hhHHHHHHHHHHHHHH
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYR-MIGFGCFTCLLGMVLL 101 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~~g~~~~ 101 (572)
.+...+.+-.+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.+.||. +|||| -++++.+.+++...++
T Consensus 21 d~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~ 100 (467)
T COG2211 21 DFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLL 100 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHH
Confidence 3344444445567899999999999999999999999999999999999999974 37755 6666777788877777
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (572)
..+..... ..+....++--.+.+++...+.....++.+++.++.+ +|.+..++...+
T Consensus 101 F~~p~~~~-----------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~------ER~~l~s~R~~~ 157 (467)
T COG2211 101 FITPDFSM-----------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ------ERASLTSWRMVF 157 (467)
T ss_pred HcCCCccc-----------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH------HHHHHHHHHHHH
Confidence 65441110 2245556667888999999999999999999988864 499999999999
Q ss_pred HHHHHHHHhhhhhheec-------ccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccC
Q 008264 182 VSASSIVAVTCIVYIQD-------NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254 (572)
Q Consensus 182 ~~~g~~~g~~~~~~l~~-------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (572)
.++|..+...+.+.+.. ..||+..-.+.++...+..+..+...+|...+..+.++
T Consensus 158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~------------------ 219 (467)
T COG2211 158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT------------------ 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc------------------
Confidence 99997766655544332 23566555444444333333333322221110000000
Q ss_pred CCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008264 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAV 334 (572)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (572)
+.+.++.++... ..+-|.++..+ ....+.+.
T Consensus 220 ---------------------~~~~~~~~~~~~-------------------------~~~Nrp~~~~l---~~~l~~~~ 250 (467)
T COG2211 220 ---------------------GVKLKLKDSFLL-------------------------IFKNRPLLLLL---LMNLLLFI 250 (467)
T ss_pred ---------------------cccccHHHHHHH-------------------------HHccchHHHHH---HHHHHHHH
Confidence 000001111000 00111121111 12222333
Q ss_pred hhcc-chhhhhhhc-cCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 008264 335 TISQ-SSFLVLQAS-SMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTA 412 (572)
Q Consensus 335 ~~~q-~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i 412 (572)
.++. .+...+... .++..- ..+...........+.+.++ .-++.+| ++.++...+|.++..+
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~~-----l~~~~~~~~~~~~~l~~~~~----~p~L~~~-------~gkk~~~~~~~~~~~i 314 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDPE-----LFAYLLLLASGAGLLIGLIL----WPRLVKK-------FGKKKLFLIGLLLLAV 314 (467)
T ss_pred HHHHHhhhhheeEEEEcCChH-----HHHHHHHHHHHHHHHHHHHh----HHHHHHH-------hchHHHHHHHHHHHHH
Confidence 3333 333233222 222211 01111111111111211222 2233344 3444778888888888
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccC-------ChhhHHHHHHH
Q 008264 413 SMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-------PKSMSSIASTL 485 (572)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~-------P~~~rg~~~g~ 485 (572)
+.+.+.+.. ..+.+.++...++.++|.+...+..++.+.+.. -.+..|...|.
T Consensus 315 ~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~ 374 (467)
T COG2211 315 GYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG 374 (467)
T ss_pred HHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence 877666553 124455555667778888888888888777653 56678899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q 008264 486 SGAGLSAANLVASLIMNAVDDITK 509 (572)
Q Consensus 486 ~~~~~~ig~~lg~~~~~~i~~~~~ 509 (572)
.++..-+|.+++..+.+.+....|
T Consensus 375 ~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 375 MTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999888876653
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-10 Score=119.08 Aligned_cols=377 Identities=15% Similarity=0.101 Sum_probs=218.6
Q ss_pred HhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----cch-hhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 44 LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG-----RYR-MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 44 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----rr~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
+..|+++++.-.+.++....+... ..+..|+.||+. + ||. -+..|..++..+..+..++.-.-. ++
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~------~~ 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA------ES 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc------cc
Confidence 346899999988888887766655 688899999997 6 554 344566667776666555431111 00
Q ss_pred ccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee
Q 008264 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (572)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 197 (572)
.. +.............++..+.|+|.+....+..++++|..|| ++|+++.++.+...-+|.+++.++.+.+.
T Consensus 78 ~~-~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 78 GQ-QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-------ERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred cc-ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00 00111112233456668889999999999999999999999 45999999999999999999999988776
Q ss_pred cccccc-hh---hhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcccchhcccCCCcccc
Q 008264 198 DNLGWK-VG---FGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRL 273 (572)
Q Consensus 198 ~~~~w~-~~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (572)
+.++-. .. -.++.+..++.++..+-..++.++..+..++
T Consensus 150 ~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~------------------------------------- 192 (403)
T PF03209_consen 150 DPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAER------------------------------------- 192 (403)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCC-------------------------------------
Confidence 665422 21 1222222333333333222222111100000
Q ss_pred CCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhhhhhccCCCC
Q 008264 274 MPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRH 352 (572)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~ 352 (572)
++..+.+....... + .+.++++.++. .... .++.| ..+-.|-......+
T Consensus 193 ---~~~~f~~a~~~~~~--------------------~--~~a~~f~~fl~--l~t~---a~~~QD~iLEPygg~Vfgms 242 (403)
T PF03209_consen 193 ---PRPPFREAWRQVWA--------------------S--PQARRFFVFLF--LGTL---AFFMQDVILEPYGGEVFGMS 242 (403)
T ss_pred ---CCccHHHHHHHHHh--------------------C--CChhHHHHHHH--HHHH---HHHhhHHHcCCchhHHcCCC
Confidence 00011111111000 0 01122211111 1111 12223 22212222222211
Q ss_pred CCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008264 353 VTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEG 432 (572)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~ 432 (572)
.+ .+..++.......+++..+..+.. .| + .++.+...+|.....+++.......
T Consensus 243 v~-----eTT~Lta~~~~G~L~G~~~~g~~l----~~---~---~~~~~~a~~G~~~~~~~f~lii~a~----------- 296 (403)
T PF03209_consen 243 VG-----ETTRLTAFWGGGTLLGMLLAGFLL----SR---R---LGKKRTAALGCLLGALAFALIILAG----------- 296 (403)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHh----cC---C---CCchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 10 123455555666666666554443 22 1 3444666778888877776655443
Q ss_pred CCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008264 433 ISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGG 512 (572)
Q Consensus 433 ~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~ 512 (572)
..-+.+.+....+++|++.++......+...+..+++..|..+|.+...+.++..++..+.+.+.+...
T Consensus 297 --------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~--- 365 (403)
T PF03209_consen 297 --------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR--- 365 (403)
T ss_pred --------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 122566778888999999999999999999999999999999999999999999999998888776653
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 008264 513 NGGWIPSNINKGHYDYYYWLLTALSMANFLY 543 (572)
Q Consensus 513 ~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~ 543 (572)
++.++-....|..+|.+=++..++++.+
T Consensus 366 ---~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 366 ---ALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred ---HhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 2221111224555665555555555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=134.83 Aligned_cols=176 Identities=10% Similarity=0.034 Sum_probs=133.0
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
++|..+..+.........++.+..++|.|+++++|+++.+++++.+...+...++.+++|+++||+ |||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 334444333333344444455556789999999999999999988888888888999999999998 9999888776555
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.+.......+. +.+.+++.+++.+++.|...+..+++..|.+|+ + |+++
T Consensus 293 ~~~~~~~~~~~-----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~-~g~~ 341 (393)
T PRK15011 293 VCFYAGMLMAH-----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-------Q-AGSA 341 (393)
T ss_pred HHHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C-cchH
Confidence 54443333322 455566778888888777777777888888875 1 6889
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
.++++...++|..++|.++|++.+.+||+.+|.+.++..+++++..+.
T Consensus 342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999888899999999999999999889999999887777766655543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=134.20 Aligned_cols=175 Identities=11% Similarity=0.055 Sum_probs=128.1
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
+.....+...++....+|++..++|.|+++.+|++..+.+++.....++..++.+++|+++||+ |||+++..+.++..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~ 328 (490)
T PRK10642 250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFV 328 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence 3333333344556678888889999999999999999888888888899999999999999998 999999888765444
Q ss_pred HHHHH-HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 97 GMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 97 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
+...+ .... ..+...+++++++.|++.+...+...+++.+.+|+ +.|+++.
T Consensus 329 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~-------~~Rg~~~ 380 (490)
T PRK10642 329 LAIPAFILIN---------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT-------HIRYSAL 380 (490)
T ss_pred HHHHHHHHHh---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------ccchHHH
Confidence 33322 2111 01455677888998888777777888888999998 4589999
Q ss_pred HHHHHHHHHHHHHHhhhhhheeccc-ccchhhhHHHHHHHHHHHHH
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~ 220 (572)
++.+....+++.++|.+.+++.+.. +|+.++++..+..+++++..
T Consensus 381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 9765556677788898988887654 47766665554444444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=133.90 Aligned_cols=174 Identities=12% Similarity=0.025 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
++.+.+..++....++++..++|.|+++++|++..++++......++..++.+++|+++||+ |||+.+.....+..++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHH
Confidence 44455566666667777788999999999999999999999999999999999999999998 99998776554444433
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
.+..... . .+.....+.+++.|+..............|.+|+ +.|+++.++.
T Consensus 339 ~~~~~~~--~-------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-------~~~g~a~gi~ 390 (467)
T PRK09556 339 TLGVYQH--A-------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-------KAIGVANGIK 390 (467)
T ss_pred HHHHHHh--c-------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch-------hhHHHHHHHH
Confidence 2222211 0 1344455677777754433333334566799988 4589999999
Q ss_pred HHHHHH-HHHHHhhhhhheec------------ccccchhhhHHHHHHHHHHHHHH
Q 008264 179 YVFVSA-SSIVAVTCIVYIQD------------NLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 179 ~~~~~~-g~~~g~~~~~~l~~------------~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
+...++ |..++|.+.|++.+ ..||+..|.+..++.+++++..+
T Consensus 391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 999887 77899999999988 56899999888777766655543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=125.06 Aligned_cols=172 Identities=22% Similarity=0.255 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcch-hhHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYR-MIGFGCFTCLL 96 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~ 96 (572)
..+......++............+.|+.+.+|.+..+.+++.....++..++.++.|+++||+ |||+ ++..+..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 344455566667777777778889998888899999999999999999999999999999998 9999 99999999998
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+.+...... +....++..++.|++.+...+...+++.|..|+ ++|++.++
T Consensus 255 ~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 304 (352)
T cd06174 255 GLLLLALAP-----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-------EARGTASG 304 (352)
T ss_pred HHHHHHHhc-----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-------HHHHHHHH
Confidence 888887654 466788899999999999999999999999998 45899999
Q ss_pred HHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
+++...++|..+++.+.+++.+..+|+..|.+.++..+++.+..
T Consensus 305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988999999999888777666554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=128.24 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=131.8
Q ss_pred HHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhcc
Q 008264 28 FERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (572)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~ 107 (572)
+..+++.....+++.|+.+ .|.+ +.+.....+.++..++.++.|+++||+ ||||.+..+..+..++..+.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-- 300 (399)
T PRK05122 227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3455556666778888754 4553 445667778888899999999999998 999999988888888877766544
Q ss_pred CCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHH
Q 008264 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187 (572)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 187 (572)
+...+++.+++.|++.+...|.....+.|.+|+ ++|+++.++++...++|..
T Consensus 301 ---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 301 ---------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSLG 352 (399)
T ss_pred ---------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHH
Confidence 455677788999999998888888888888877 4589999999999999999
Q ss_pred HHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 188 VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 188 ~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
+++.+.|++.++.||++.|++.+++.+++++..+..+++
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999888899999999888777776665554443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-11 Score=125.76 Aligned_cols=159 Identities=11% Similarity=0.101 Sum_probs=128.0
Q ss_pred HHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCC
Q 008264 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (572)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~ 110 (572)
.........++.|+++++|.++.+.+++.........++.+++|+++||+ |||+++..+.++..+........+
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~----- 286 (375)
T TIGR00899 213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN----- 286 (375)
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH-----
Confidence 33344455678899999999999999988887778888899999999998 999999888766555554444433
Q ss_pred CCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHh
Q 008264 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (572)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 190 (572)
+.+.+++.+++.|++.|...+...++..|..|++ ++++.++++...++|..++|
T Consensus 287 ------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~g~ 340 (375)
T TIGR00899 287 ------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR--------AGAATTLYTNTGRVGWIIAG 340 (375)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--------hhHHHHHHHHHHHHHHHHHH
Confidence 4556677788899988888888888888887651 56899999999999999999
Q ss_pred hhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 191 TCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 191 ~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
.+.|++.+..||+..|++.++..+++.+...
T Consensus 341 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 341 SVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 9999999888999999988877776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=128.20 Aligned_cols=193 Identities=12% Similarity=0.072 Sum_probs=144.0
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-
Q 008264 6 LLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCR-EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR- 83 (572)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr- 83 (572)
..+++..+.+||.+++..+..++..+.+....+..-+|+++ +.+-+.+..|+++++..++..+..|..|+...|. |+
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~ 101 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSV 101 (488)
T ss_pred cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCc
Confidence 34444567789999999999999999998888888899876 5788888899999999999999999999999998 84
Q ss_pred chhhHHHHHHHHHHHHHH-HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCC
Q 008264 84 YRMIGFGCFTCLLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG 162 (572)
Q Consensus 84 r~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 162 (572)
|+=+..|.+++.+|.++. +... .| +...+.++++|++.|+|.|.. ...-+|+++.-..+
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~-~~------------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAY-VP------------------NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVE 161 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHh-cc------------------cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCcc
Confidence 555556888999999888 4433 22 226788899999999998874 77889999866664
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee----cc---------cccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 163 DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----DN---------LGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 163 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----~~---------~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
| |.++++....+..+|.++||.+...+. .. .-|..+=++.++..++.++.+....++
T Consensus 162 d-------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 162 D-------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred c-------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 4 788888877777777777777644332 11 123445556655555555555444433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-10 Score=115.23 Aligned_cols=162 Identities=11% Similarity=0.028 Sum_probs=116.8
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
+.+..|..+.+| +...+-|...+|.+.+....+.+-|+.||+ |-|...+++..+.++|..+=..+. .|.+++
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~----- 136 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPP----- 136 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccccc-----
Confidence 456677788888 888889999999999999999999999998 999999999999999998877665 332211
Q ss_pred ccCCccCCCcchhH--HHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhh
Q 008264 118 LRNGCESATWSQLM--PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (572)
Q Consensus 118 ~~~~~~~~~~~~~~--~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 195 (572)
.++ ....+..+.+.+...+...-.-+.+-+|++++ |..+.++-.++..+|..+|.++.+.
T Consensus 137 -----------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q-------ra~A~~~~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 137 -----------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ-------RAIATVLGVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred -----------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch-------hhhhhhHHHhcchHHHHHHhhccce
Confidence 233 56677888887777766666667778888844 8888888777777788777777666
Q ss_pred eecc------cccch--hhhHHHHHHHHHHHHHHhcCC
Q 008264 196 IQDN------LGWKV--GFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 196 l~~~------~~w~~--~f~~~~~~~~~~~~~~~~~~~ 225 (572)
+..+ ..|.. .|+....+..+.+++..+.++
T Consensus 199 lV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~ 236 (480)
T KOG2563|consen 199 LVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFT 236 (480)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6433 34554 344343333333333344333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=128.22 Aligned_cols=169 Identities=12% Similarity=0.126 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
..+...+..++....++++..++|.|+++++|+++.+++.+.+.+.++..++.+++|+++||+ |||+++..+..+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 344445555666667778888999999999999999999999999999999999999999998 9999998877766665
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
..+...+. +...+.+..++.|++.+...+...++..+..|++ +++..+.
T Consensus 285 ~~~~~~~~-----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~ 333 (394)
T PRK03699 285 MYLFVNTD-----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA--------SPKLVNF 333 (394)
T ss_pred HHHHHHcC-----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------CHHHHHH
Confidence 55554333 3444556677888888888888888888776642 3556778
Q ss_pred HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 218 (572)
.....++|..++|.+.|++.+..||+..|++.++..+++.+
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 88888999999999999999989999999887776665544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-11 Score=136.15 Aligned_cols=134 Identities=15% Similarity=0.059 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHH
Q 008264 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYF 135 (572)
Q Consensus 56 ~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (572)
.....+..++..++.+++|+++||+ |||+++.++.++.+++.++++++. +...+++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~ 653 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIA 653 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHH
Confidence 3445566788899999999999998 999999999999998888887755 4455677
Q ss_pred HHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHH
Q 008264 136 AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLL 215 (572)
Q Consensus 136 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~ 215 (572)
.+++.++..++..+...++++|++|. +.|++++++.+....+|+++||.+++++.+. +...+|++.+++.++
T Consensus 654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt-------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll 725 (742)
T TIGR01299 654 LLCLFGGLSIAAWNALDVLTVELYPS-------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALAC 725 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 78888888888899999999999999 5599999999999999999999999877653 456788877776666
Q ss_pred HHHHHH
Q 008264 216 SALSFF 221 (572)
Q Consensus 216 ~~~~~~ 221 (572)
+.++.+
T Consensus 726 ~~ll~~ 731 (742)
T TIGR01299 726 GGLLAL 731 (742)
T ss_pred HHHHHH
Confidence 555444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=125.78 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=129.5
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHh
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~ 104 (572)
..++..+.........+.|. ++++.++.+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.++..++.++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 290 (377)
T TIGR00890 213 SFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFI 290 (377)
T ss_pred HHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHc
Confidence 33333444444444556664 56899999999999999999999999999999998 99999999988888887776654
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 184 (572)
.+. +...+++..++.+++.+...+..++++.|.+|+ ++|++..++++...++
T Consensus 291 ~~~---------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~ 342 (377)
T TIGR00890 291 PML---------------------NDVLFLATVALVFFTWGGTISLFPSLVSDIFGP-------ANSAANYGFLYTAKAV 342 (377)
T ss_pred ccc---------------------hhHHHHHHHHHHHHHhccchhccHHHHHHHhhh-------hhhhhHhHHHHHHHHH
Confidence 310 223344567788888888888888999999988 4489999999999999
Q ss_pred HHHHHhhhhhheecccccchhhhHHHHHHHHHH
Q 008264 185 SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (572)
Q Consensus 185 g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~ 217 (572)
|..++|.+.+++.++.||+++|.+.+++.++++
T Consensus 343 g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 343 AGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999999988999999998876655543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-12 Score=110.96 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHH
Q 008264 60 FIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGL 139 (572)
Q Consensus 60 ~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 139 (572)
+.+.++..++.++.|+++||+ |||+++..+..+..++.+....+. +.+.+.+.+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 60 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARFL 60 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHHH
Confidence 445677888999999999998 999999999988888887776644 56778889999
Q ss_pred HHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHH
Q 008264 140 MSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 140 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 219 (572)
.|++.+...+...+++.|.+|+ ++|++..++.+...++|..++|.+.+++.+..+|++.|++.+...++..+.
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPP-------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCCh-------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 448999999999999999999999999988889999998877766655555
Q ss_pred HHh
Q 008264 220 FFL 222 (572)
Q Consensus 220 ~~~ 222 (572)
...
T Consensus 134 ~~~ 136 (141)
T TIGR00880 134 LAF 136 (141)
T ss_pred Hhh
Confidence 443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=126.18 Aligned_cols=166 Identities=15% Similarity=0.104 Sum_probs=129.6
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETT---AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~---~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
.++.......+.+.++.|+.+..+.... ..+.+.....++..++.+..|+++||+ |||+++..+..+..++.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence 3444445455567778887765443222 245556667778888899999999998 999999998887777766665
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
+.+ +.+.+++.+++.|++.+...|...+++.+..|+ +.|++.+++++...
T Consensus 307 ~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~ 356 (408)
T PRK09874 307 FVQ-----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN-------QIAGRIFSYNQSFR 356 (408)
T ss_pred Hhc-----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc-------ccceeeehHHHHHH
Confidence 543 456677889999999999999999998887776 44899999999999
Q ss_pred HHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
++|..+||.++|++.++.||+..|++.+++.+++.+..+.
T Consensus 357 ~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 357 DIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999899999999988877776665544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-11 Score=128.49 Aligned_cols=174 Identities=8% Similarity=0.008 Sum_probs=132.3
Q ss_pred HHHHHHHHHhhcchHHHHHHHhHhcCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 24 ANEAFERMATVGFTPNMILYLCREYNME--------TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~--------~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
+..++....+.....+.+.|+.+ .|.+ ..+.+.+.+...+...++.++.|+++||+ |||+++..+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~ 292 (418)
T TIGR00889 215 FFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWA 292 (418)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 33444444333344566777754 4543 35668889999999999999999999998 99999999999888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++..+...+... ..+...+++.+++.|++.+...+....++.|.+|+ +.|++++
T Consensus 293 v~~~l~~~~~~~-------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~~~ 346 (418)
T TIGR00889 293 LRFGFFAYGDPE-------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRASAQ 346 (418)
T ss_pred HHHHHHHHcCcc-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHH
Confidence 877666553200 01345577789999999999889999999999998 5599999
Q ss_pred HHHH-HHHHHHHHHHhhhhhheecc------cccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 176 SWYY-VFVSASSIVAVTCIVYIQDN------LGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 176 ~~~~-~~~~~g~~~g~~~~~~l~~~------~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
++++ ...++|..+||.++|++.++ +||+.+|.+.+++.+++++.++...+
T Consensus 347 g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 347 GLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9997 56789999999999998876 46999999887776666665544443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.9e-11 Score=125.82 Aligned_cols=177 Identities=16% Similarity=0.072 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
....+...++..+.+|.+..+++.|+++.+|++......+.........++.++.|+++||+ ||||++..+.++..++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~ 330 (438)
T PRK09952 252 FLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSA 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 33334456666778888888999999999999998766666667777888899999999998 99999998876655544
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
+.+...... ..+...+++..++.+++.+...+...+++.|.+|. +.|+++.++.
T Consensus 331 ~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-------~~r~tg~g~~ 384 (438)
T PRK09952 331 FPFFMALEA-------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA-------SYRYSGAGVG 384 (438)
T ss_pred HHHHHHHHc-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc-------chhHHHHhHH
Confidence 333322100 01233444556667888888888899999999998 4588888885
Q ss_pred HHH-HHHHHHHHhhhhhheeccc--ccchhhhHHHHHHHHHHHHHHh
Q 008264 179 YVF-VSASSIVAVTCIVYIQDNL--GWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 179 ~~~-~~~g~~~g~~~~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
+.. ..+|+.++|.+.+++.+.. +|+.++.+.+++.+++.+..+.
T Consensus 385 ~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 385 YQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 544 4589999999999987633 5888888777776666665543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=125.78 Aligned_cols=166 Identities=13% Similarity=-0.016 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
.+......++....++.+..+++.|+++++|.++.+.+.+.....++..++.+++|+++||+ |||+.+..+..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 45555666777777788888999999999999999999999999999999999999999998 99998876554444333
Q ss_pred -HHH-HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 99 -VLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 99 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
... .... ..+...+++..++.|++.+...+...+++.|.+|++ .|+++.+
T Consensus 300 ~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~ 351 (394)
T TIGR00883 300 VPLLMALLD---------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTE-------VRYTGAS 351 (394)
T ss_pred HHHHHHHhc---------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcc-------ceeeEee
Confidence 222 1211 014455667788889988889999999999999984 4788888
Q ss_pred HH-HHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHH
Q 008264 177 WY-YVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIM 213 (572)
Q Consensus 177 ~~-~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~ 213 (572)
+. .....+|..++|.++|++.++.| |++.++...+..
T Consensus 352 ~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 352 LAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred ehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 74 45567899899999999988887 887776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=124.31 Aligned_cols=162 Identities=7% Similarity=-0.043 Sum_probs=133.0
Q ss_pred hcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008264 34 VGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPP 113 (572)
Q Consensus 34 ~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 113 (572)
+++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++++..+.++..++.++..+..
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------- 310 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------- 310 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc--------
Confidence 45566788899888999999999999999999999999999999997 888888888877777776665433
Q ss_pred CcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhh
Q 008264 114 ACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193 (572)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 193 (572)
+.....+..++.|++.+...+...+++.|..|+ +.|++++++++...++|..+||.+.
T Consensus 311 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 311 ---------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-------EMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 455567778888888888778888999999998 5599999999999999999999999
Q ss_pred hheecccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 194 VYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 194 ~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
|++.+.+|++..++..+...++..++.....++
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 999998899888887776655555544444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.5e-11 Score=127.01 Aligned_cols=160 Identities=8% Similarity=0.013 Sum_probs=127.0
Q ss_pred HHhhcchHHHHHHHhHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhcc
Q 008264 31 MATVGFTPNMILYLCREY---NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (572)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l---~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~ 107 (572)
..+......++.|+.+.+ +.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+.++..++.++.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~-- 313 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT-- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc--
Confidence 333333445677766543 56667888999999999999999999999998 999999999888888887777655
Q ss_pred CCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH-HHHHHHHHH
Q 008264 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASS 186 (572)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~ 186 (572)
+.+.+++.+++.|++.+...+....++.+.+|+ +.|++..+. ++...++|.
T Consensus 314 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 314 ---------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV-------RLSATIYLVGFQFAKQLGA 365 (420)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cceeeeeeehHHHHHHHHH
Confidence 566678889999999888888888899998887 336766655 567788999
Q ss_pred HHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 187 ~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
.++|.+.|++.+.+||+.+|.+.++..++..++.+
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999987776655554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=121.43 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
..+..++..++...+++.+..+.+.|+++ +|.++.+.+.+.+...++..+..++.|++.||+ |+|+++.++.+...+.
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHH
Confidence 34455566677778888888899999965 899999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+..++++ +.+.+++.+++.|+..|...++...++.+. |+ +.|+++.++
T Consensus 284 ~~~~~~~~-----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~-------~~~~~~q~~ 332 (382)
T TIGR00902 284 WAIIGAIE-----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG-------SEIAKLQAL 332 (382)
T ss_pred HHHHHhHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH-------hhHHHHHHH
Confidence 88887765 677788899999999999999999999987 76 347888998
Q ss_pred HH-HHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHH
Q 008264 178 YY-VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 178 ~~-~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 219 (572)
++ ....+|..+|+.++|++.+++|+ ..|.+.+...++++++
T Consensus 333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 76 45789999999999999998886 6677766666655444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=120.31 Aligned_cols=168 Identities=10% Similarity=-0.047 Sum_probs=130.2
Q ss_pred HHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH-
Q 008264 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW- 102 (572)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~- 102 (572)
...++....+++...++++|+++++|.++.+++++...+.++..++.++.|+++||+ |||+++ .+..+..++.....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~l~~ 289 (390)
T PRK03545 212 LLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLLLLP 289 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHHHHH
Confidence 334444455555566788888888999999999999999999999999999999998 987654 45444444443332
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
... +...+++..++.|++.+...+...+.+.+..|+ .|+++.+++....
T Consensus 290 ~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~ 338 (390)
T PRK03545 290 AAN-----------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD--------ATDVAMALFSGIF 338 (390)
T ss_pred Hhc-----------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC--------cHHHHHHHHHHHH
Confidence 222 456677788888998888778888888877653 2788999999999
Q ss_pred HHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcC
Q 008264 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
++|..+||.++|++.+++|++..|.+.+.+.+++++......
T Consensus 339 ~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 339 NIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999998888777777665443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=120.22 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=122.9
Q ss_pred HHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCC
Q 008264 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (572)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~ 110 (572)
+.+.....++|.|+++ .|.++++.+.+.+...++..++.++.|+++||+ |||+++..+..+..++..... ..
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~~----- 285 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-SQ----- 285 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-hh-----
Confidence 3333444667888865 699999999999999999999999999999998 999999888877777665432 11
Q ss_pred CCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHh
Q 008264 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (572)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 190 (572)
...+...++.|++.+...|...+.+.|..|++ +++...+.+....++|..+||
T Consensus 286 --------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~lG~~igp 338 (381)
T PRK03633 286 --------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHH-------ELVAMNQALLLSYTVGSLLGP 338 (381)
T ss_pred --------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 12344667778877778899999999888773 366777777888899999999
Q ss_pred hhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 191 TCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 191 ~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
.++|++.++++|++.|.+.+.+.++..+..+.
T Consensus 339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 339 SFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887777655544443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-10 Score=121.17 Aligned_cols=164 Identities=11% Similarity=-0.039 Sum_probs=126.1
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhh
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT 105 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~ 105 (572)
.++.....+.+..++|.|+++ .|.++.+.+.+...+.++..++.++.|+++||+ |||+.+..+.+...++.+......
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~ 306 (406)
T PRK11551 229 YFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAAP 306 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333344555666678888764 799999999999999999999999999999998 999999887666666655554332
Q ss_pred ccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHH
Q 008264 106 ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185 (572)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 185 (572)
+.+.+.+..++.|++.++..+...++..|.+|+ +.|+++.++.+...++|
T Consensus 307 -----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g 356 (406)
T PRK11551 307 -----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT-------QVRGTGVGAAVAVGRLG 356 (406)
T ss_pred -----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch-------hhhhhhhhHHHHhhhHH
Confidence 344456667778888877888899999999998 44899999999999999
Q ss_pred HHHHhhhhhheeccc-ccchhhhHHHHHHHHHHHHHH
Q 008264 186 SIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 186 ~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~ 221 (572)
..+||.+.|++.++. +|...+++...+.+++.+..+
T Consensus 357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999987764 466666666555554444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-10 Score=120.19 Aligned_cols=175 Identities=10% Similarity=0.008 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
.+.+.....+...+++++..+++.|+++ +|.+..+++.+.+.+.++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 3344445555667778888899999976 799999999999999999999999999999998 99999998887777776
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
.+..... . +...+ ..++.|++.+...|.......+.++++ +.|++.+++.
T Consensus 285 ~~~~~~~---~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~------~~~g~~~g~~ 334 (393)
T PRK09705 285 CGFIWLP---L-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP------AIAGKLVAFM 334 (393)
T ss_pred HHHHHcc---c-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH------HHHHHHHHHH
Confidence 5544222 0 11112 234568888888888877777777542 3489999999
Q ss_pred HHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHHHhcCC
Q 008264 179 YVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
+...+++..++|.+.|++.+..| |+..|.+.++..++..+..+...+
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998775 888888877766666555554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=122.49 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHH-HH
Q 008264 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL-LW 102 (572)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~-~~ 102 (572)
....+.....+....+++.|+.+++|++..+.+++.....++..++.++.|+++||+ |||+.+..+.++..+.... ..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 323 (405)
T TIGR00891 245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFA 323 (405)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHH
Confidence 333444444556667889999999999999999999999999999999999999998 9999998887655333222 22
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
... +.+.+.+..++.+...+...+..++++.|.+|+ ++|++++++.+...
T Consensus 324 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~ 373 (405)
T TIGR00891 324 IGA-----------------------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT-------DQRAAGLGFTYQLG 373 (405)
T ss_pred hCC-----------------------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCc-------chhHHHhhHHHHHH
Confidence 111 344556666777777777788888999999988 44899999999999
Q ss_pred HHHHHHHhhhhhheecccc-cchhhhH
Q 008264 183 SASSIVAVTCIVYIQDNLG-WKVGFGV 208 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~-w~~~f~~ 208 (572)
++|..++|.+.|++.++.| |+.+|..
T Consensus 374 ~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 374 NLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999888 8776654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=125.13 Aligned_cols=149 Identities=12% Similarity=0.099 Sum_probs=115.6
Q ss_pred cchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008264 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (572)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 114 (572)
....++|.|+++++|++..+++++.+...++..++.+++|+++||+ |||+++..+.++..++.++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 3457889999989999999999999999999999999999999998 999999888766665554433221
Q ss_pred cccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh
Q 008264 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (572)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 194 (572)
..+.+...+..++.+....+..+..++++.|.+|+ ++|++.+++++...++|..+||.++|
T Consensus 363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT-------EQRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH-------HHhhcccchhhhhhhHHHHHHHHHHH
Confidence 01333333444444433334456777888999988 45899999999999999999999999
Q ss_pred heecccccchhhhHHHHH
Q 008264 195 YIQDNLGWKVGFGVPAVI 212 (572)
Q Consensus 195 ~l~~~~~w~~~f~~~~~~ 212 (572)
++.+.+||+..+.+.+..
T Consensus 424 ~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 424 LIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHhccCChHHHHHHHHHH
Confidence 999999999887655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=120.60 Aligned_cols=160 Identities=13% Similarity=0.133 Sum_probs=129.2
Q ss_pred HHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccC
Q 008264 29 ERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILP 108 (572)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~ 108 (572)
..+.+..+..+.+.|+++ .+.+. .+.....+.++..++.++.|++.||+ ||||.+..+..+..++.++...+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~--- 300 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP--- 300 (392)
T ss_pred HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc---
Confidence 344555556677778764 45553 45566677788889999999999998 999999999888888877766543
Q ss_pred CCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHH
Q 008264 109 GAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188 (572)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 188 (572)
+....++..++.|++.+...|...+.+.|.+|+ ++|+++.++++...++|..+
T Consensus 301 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 301 --------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIAYGV 353 (392)
T ss_pred --------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999998888888888998887 55999999999999999999
Q ss_pred HhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 189 g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
+|.+.+++.++.||+..|.+.+.+.+++++..+.
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988877766665543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-10 Score=118.21 Aligned_cols=175 Identities=17% Similarity=0.062 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhh-HHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI-GFGCFTCLL 96 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~~~~~~~ 96 (572)
..+...+..++....++.+..+++.|+++.+|.++.+.+++.....++..++.+++|+++||+ |||+.. ........+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHH
Confidence 344555666777777778888999999999999999999999999999999999999999998 998621 111111111
Q ss_pred HHH---HHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 97 GMV---LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 97 g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
+.+ +.....+. ..+....+....+.+.+.+ ..+...+++.|.+|+ +.|++
T Consensus 295 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~g~ 347 (399)
T TIGR00893 295 AGLVLSLLMFATNY-------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPG-------NIAGL 347 (399)
T ss_pred HHHHHHHHHHHhcc-------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh-------hHHHH
Confidence 111 11111100 0022223333333344444 789999999999998 45899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHH
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~ 220 (572)
+.++.+...++|..++|.+.+++.+..| |+..|++.++..+++.+..
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888 9999988877766665544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-09 Score=108.86 Aligned_cols=129 Identities=15% Similarity=-0.017 Sum_probs=87.4
Q ss_pred cchHHHHHHHhHhcCC---Ch----hHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHH-HHHHHHHHHHHHhhc
Q 008264 35 GFTPNMILYLCREYNM---ET----TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC-FTCLLGMVLLWSTTI 106 (572)
Q Consensus 35 ~~~~~l~~yl~~~l~~---~~----~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~-~~~~~g~~~~~~~~~ 106 (572)
..+.++|+|+++..+- ++ +..+...++..+..++..|+-|.++|+. |+||-.+... .+-.+....++++.+
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~ 111 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP 111 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 3457889999986654 33 3345566777888889999999999998 8877665543 344444455555431
Q ss_pred cCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHH
Q 008264 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (572)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 186 (572)
..++....+...+..++........++++.+..++++. ++..++-+....+|+
T Consensus 112 --------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~-------~riS~lg~~~gylgs 164 (438)
T COG2270 112 --------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNM-------GRISGLGWALGYLGS 164 (438)
T ss_pred --------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCcccc-------Ccccccccccccccc
Confidence 13566677778888899999999999999999888653 333444444445555
Q ss_pred HHHhh
Q 008264 187 IVAVT 191 (572)
Q Consensus 187 ~~g~~ 191 (572)
.+.-+
T Consensus 165 ~i~li 169 (438)
T COG2270 165 VILLI 169 (438)
T ss_pred hHHHH
Confidence 54443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=122.75 Aligned_cols=173 Identities=16% Similarity=0.096 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--chhh-HHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR--YRMI-GFGCFTCL 95 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr--r~~~-~~~~~~~~ 95 (572)
++...+..++.....++...++|.|++++.|++..+++.+...+.++..++.+++|+++||+ ++ |+.. .....+..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHHHH
Confidence 34444555555666778888999999999999999999999889999999999999999996 54 3322 22222333
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.+...... . .+....++..++.|.+..........+..|.+|+ +.|+++.
T Consensus 334 ~~~~~~~~~~--~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~ 385 (452)
T PRK11273 334 IATIVYWLNP--A-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAA 385 (452)
T ss_pred HHHHHHHHhc--c-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-------hhhhhHH
Confidence 3333322211 0 1233334444455544333223334566788888 4589999
Q ss_pred HHHHHHHHHHHHH-HhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008264 176 SWYYVFVSASSIV-AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 176 ~~~~~~~~~g~~~-g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
++.+...++|+.+ +|.+.|++.++.||+..|.+.+...+++++..
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999888888654 79999999998999999988777666655544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.3e-10 Score=119.41 Aligned_cols=151 Identities=11% Similarity=0.007 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHH-HHHH
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV-LLWS 103 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~-~~~~ 103 (572)
..++....++++..++|.|+++.+|++..+++++...+.++..++.+++|+++||+ |||+++..+.++..+... ....
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777888899999988999999999998889999999999999999998 999998876544433221 1111
Q ss_pred hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHH
Q 008264 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (572)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (572)
.... .+.....+..++.+++.+...+....++.|.+|+ +.|++++++.+...+
T Consensus 325 ~~~~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~-------~~rg~~~g~~~~~~~ 377 (434)
T PRK15075 325 LVAA--------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPA-------EVRTAGFSLAYSLAT 377 (434)
T ss_pred HHcC--------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC-------CccchheeHHHHHHH
Confidence 1100 0222333445556677777777777889999998 448999988554444
Q ss_pred -HHHHHHhhhhhheecccccc
Q 008264 184 -ASSIVAVTCIVYIQDNLGWK 203 (572)
Q Consensus 184 -~g~~~g~~~~~~l~~~~~w~ 203 (572)
+++.++|.+.+++.++.|++
T Consensus 378 ~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 378 AIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHhhhHHHHHHHHHHhcCCc
Confidence 45777999999998887764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=120.14 Aligned_cols=170 Identities=11% Similarity=0.037 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhHHHH--HHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY-VGRYRMIGFGC--FTCL 95 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~--~~~~ 95 (572)
.+..+...++..++++....+++.|++ ++|+++.+++++.+...++..++.+++|+++||. .++|+...++. ++..
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 344444556667777777888899986 4799999999999999999999999999999984 13444444333 3333
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.+++..+. +.+.+++.+++.|++.+...++..+++.|.+|+ +++++.+
T Consensus 322 l~~ll~~~~~-----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-------~~~g~~~ 371 (455)
T TIGR00892 322 LTHLLCALAG-----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-------QRFSSAV 371 (455)
T ss_pred HHHHHHHHhc-----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-------HHHhhHH
Confidence 3333443333 566678889999999999999999999999988 4489999
Q ss_pred HHHHHHHHHHHHHHhhhhhheeccc-ccchhhhHHHHHHHHHHHH
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~ 219 (572)
++++...++|..+||.++|++.+.. +|++.|++.++..+++.+.
T Consensus 372 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 372 GLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred hHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999999999999999998876 5999999988776655543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=115.82 Aligned_cols=174 Identities=13% Similarity=0.056 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhH-HHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-FGCFTCLLG 97 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~~g 97 (572)
.+...+..++....++++..++|.|++ ++|++..+.+.+.....++..++.++.|+++||+ |||+.+. .+.+...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence 344445566677778888889998885 5899999999999999999999999999999998 9998764 333333333
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+.+...... ...+....++..++.|++.+...+ ..+...+..|+ +|+++.++
T Consensus 302 ~~~l~~~~~~------------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~--------~~g~~~g~ 354 (402)
T TIGR00897 302 TLALYYIPQH------------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK--------HKGAAMSV 354 (402)
T ss_pred HHHHHHHHHc------------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc--------hhHHHHHH
Confidence 3333221100 001445566778888888777654 34555664332 38999999
Q ss_pred HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
++...++|..++|.+.+++.+..||..+|++.+++.+++.+...
T Consensus 355 ~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 355 LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999989999999988877666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=119.42 Aligned_cols=172 Identities=11% Similarity=0.076 Sum_probs=126.7
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHH-HHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHh
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIF-IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~-~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~ 104 (572)
.++.....+......++|+.+++|+++.+.+++.. ...++..++.+++|+++||+ ||||.+..+.++..++.+.....
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555667888888889999999999874 55679999999999999998 99998877666555544333211
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 184 (572)
.... .+...+.+..++..++.|...++..++..+..+++ .+++.+++.+...++
T Consensus 310 ~~~~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~-------~~~t~~gl~~s~~~l 363 (491)
T PRK11010 310 SITD-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS-------FSATQFALLSALSAV 363 (491)
T ss_pred Hhcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------CcHHHHHHHHHHHHH
Confidence 1000 13333444566656566666677788888888873 468889999999999
Q ss_pred HHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcC
Q 008264 185 SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 185 g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
|..+++.+.|++.+.+||+..|.+.+++.+.+++.....+
T Consensus 364 g~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 364 GRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888999999989999999998888887776665544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-08 Score=106.94 Aligned_cols=358 Identities=16% Similarity=0.098 Sum_probs=208.4
Q ss_pred HHHHHHHHHHhhcch---HHHHHHHhHhcCCChh-HHHHHHHHH----HHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 23 IANEAFERMATVGFT---PNMILYLCREYNMETT-AATNIIFIW----TAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~l~~yl~~~l~~~~~-~~~~i~~~~----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
....+.+.++++... .....+.....+.+.. ..+...... .+...+.++.-|.++||+ |||..+...++..
T Consensus 24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~ 102 (463)
T KOG2816|consen 24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGT 102 (463)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHH
Confidence 334455555544444 4555555554443332 222233333 567888899999999998 9999999998888
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHH--HhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMS--LGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
.+..+...+.. +.+++ +.+ -+.+.+.....++++|...+ +.|.
T Consensus 103 ~l~~~~~~~~~-------------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~-------~~R~ 147 (463)
T KOG2816|consen 103 ILPALCLLFQG-------------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSE-------EERS 147 (463)
T ss_pred HHhHHHHHHHH-------------------------HHHhh---hcccccchhhhhhhhhhheeeccch-------hHHH
Confidence 88776666522 22222 433 35556778888999998888 4599
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcc
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (572)
..+++.+.....+..++|.+++++.+..|.-.+|.++++..++..+..+...|+...++.+++. ..+
T Consensus 148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~-------------~~~ 214 (463)
T KOG2816|consen 148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDA-------------TLR 214 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccc-------------ccc
Confidence 9999999999999999999999999999999999999998888888777666653332222100 000
Q ss_pred cCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008264 253 TKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMI 332 (572)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (572)
...++ ..+.....+..+.... .+..|..+..+.. .....
T Consensus 215 ~~~~~--------------~~~~~~~~~~~~~~~~-------------------------~~~~r~~l~l~l~--~~~~~ 253 (463)
T KOG2816|consen 215 ELTPG--------------SLDSSHVADAFQSLTK-------------------------VGPDRLLLLLLLV--AFLSS 253 (463)
T ss_pred ccCCC--------------cccchhhhhhhhhhcc-------------------------cCCCccchHHHHH--HHHHH
Confidence 00000 0000000011111100 0011111111111 11111
Q ss_pred HHhhcc-c-hhhhhhhccCCCCCCCCceec-ccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHH
Q 008264 333 AVTISQ-S-SFLVLQASSMDRHVTPNFEIP-SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLF 409 (572)
Q Consensus 333 ~~~~~q-~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~ 409 (572)
..-..+ . ...++ .+..++ |+.. -+.+.........+... +..+...+. ....+.+..|+..
T Consensus 254 ~~~~~~~~~~~~~y----l~~~f~--w~~~~~s~~~~~~~~~~~i~~l----~~~~~l~~~------l~~~~~i~lGl~~ 317 (463)
T KOG2816|consen 254 LPEAGGASDVLLLY----LKAKFG--WNKKEFSDLLSLVSILGIISQL----LLLPLLSSI------LGEKRLISLGLLS 317 (463)
T ss_pred HHHhcCceeEEEEE----EeeecC--cCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------HhhhhHhhHHHHH
Confidence 111111 1 11111 222221 1111 11122222222222222 223233332 2223578889988
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHH
Q 008264 410 STASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 489 (572)
Q Consensus 410 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 489 (572)
-.+..++.++.. ..|... ...+......+..|...+++...+.++.+|+.+++....
T Consensus 318 ~~~~~~~~af~~----------------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i 374 (463)
T KOG2816|consen 318 EFLQLLLFAFAT----------------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI 374 (463)
T ss_pred HHHHHHHHHHhc----------------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence 888888888765 333333 334455566778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 008264 490 LSAANLVASLIMNAVDDITK 509 (572)
Q Consensus 490 ~~ig~~lg~~~~~~i~~~~~ 509 (572)
..+.+.+++.+.+.+...+.
T Consensus 375 ~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 375 EGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHHhhhhhHHHHHHHHHHHH
Confidence 99999999999888876664
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-09 Score=107.71 Aligned_cols=82 Identities=9% Similarity=-0.092 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecc--------
Q 008264 128 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------- 199 (572)
Q Consensus 128 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------- 199 (572)
.++..++++.++.|.|.+...++.++++++..+++ ++.+..++...+..+|.++||.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~-------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~ 80 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIE-------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ 80 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc-------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence 37888999999999999999999999999998884 378889999999999999999999876521
Q ss_pred --------cccchhhhHHHHHHHHH
Q 008264 200 --------LGWKVGFGVPAVIMLLS 216 (572)
Q Consensus 200 --------~~w~~~f~~~~~~~~~~ 216 (572)
.+|++++++.+...++.
T Consensus 81 ~~~~~~~~~~~~~~yl~ia~~~~~~ 105 (310)
T TIGR01272 81 VATANAEAAKVHTPYLLLAGALAVL 105 (310)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36899988655543333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=117.33 Aligned_cols=168 Identities=13% Similarity=0.041 Sum_probs=118.8
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
....+++.+++|.+..++++......++..++.+++|+++||+ |||+.+..+.++..++.+++.+......
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 374 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-------- 374 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--------
Confidence 3444455567899998899999999999999999999999998 9999999998888887777663220000
Q ss_pred ccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee
Q 008264 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (572)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 197 (572)
.......+...+....+..+.......+...++..|.+|+ +.|+++.++.+...++|..++|.+.+++.
T Consensus 375 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 375 ----TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL-------SLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred ----CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000122222222222222223346677788999998 45899999999999999999999999998
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 198 DNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 198 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
++.+|++.|++.+++.+++.+..+...+
T Consensus 444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 444 ESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HhcCccceehhHHHHHHHHHHHHheecc
Confidence 8889999999887776666665544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=116.08 Aligned_cols=169 Identities=16% Similarity=-0.009 Sum_probs=110.7
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHH-h
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS-T 104 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~-~ 104 (572)
.++....+|++..++|.|+++++|.+..+++...+...+...++.++.|+++||+ |||+++..+.++..+....... .
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677888889999999999999999999888888888889999999999998 9999887765544333322211 1
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 184 (572)
.+. .+....+....+...+.+...+...++.+|.+|+ +.|+++.++.+...++
T Consensus 331 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~-------~~r~t~~g~~~~~g~~ 383 (432)
T PRK10406 331 QNV--------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPA-------QVRALGVGLSYAVANA 383 (432)
T ss_pred HcC--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CccchhhhHHHHHHHH
Confidence 100 0112111112222233334445677888999999 5599999997766554
Q ss_pred -HHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 185 -SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 185 -g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
++..+|.+.+++.+...|...+++.++..+++++..+.
T Consensus 384 ~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 384 LFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34457777776644333666666655555555554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=117.22 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-chhh-HHHHHHHHHH
Q 008264 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-YRMI-GFGCFTCLLG 97 (572)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~-~~~~~~~~~g 97 (572)
+.+.+..++....++++..++|.|+++++|++..+++...+.+.++..++.+++|+++||+.+| |+.. ....+...+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~ 325 (434)
T PRK11663 246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence 3334445555556666777899999889999999999999999999999999999999997222 2232 2111111111
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
........ . .+........++.|++............+|.+|+ +.|+++.++
T Consensus 326 ~~~~~~~~---~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~ 377 (434)
T PRK11663 326 VGSLWLMP---F------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-------EAAGAATGF 377 (434)
T ss_pred HHHHHHcc---c------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-------hhHHhHHHH
Confidence 11111111 0 0222233333444443222222334566787776 458999999
Q ss_pred HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
.+...++|..++|.+.+++.+..||+.+|++.+++.+++.+..+.
T Consensus 378 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 378 VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999899999999888777666555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-08 Score=107.31 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=118.0
Q ss_pred HHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc--cC--cchhhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008264 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY--VG--RYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (572)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~--~G--rr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 114 (572)
....|+++++|+++++.+.+.+...+-.. .-++.|.++|.+ .| ||.-++++.++..++...++.....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 45568899999999998776665554444 456778999986 23 5555566666665555555543211
Q ss_pred cccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh
Q 008264 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (572)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 194 (572)
..+.....+..++..+|....-....+++.|...++.. .|+...+..+....+|.+++..+.|
T Consensus 83 ------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-----~~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 83 ------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE-----SRGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred ------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11445566677888899999999999999998877653 3788999999999999999999999
Q ss_pred heecccccchhhhHHHHHHHHHHHHHHhcC
Q 008264 195 YIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 195 ~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
.+.+..+++..|.+.+++.++.++..+...
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~ 175 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIVALFLL 175 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHHHHHhh
Confidence 999989999999988777666655444333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=117.57 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
.....+...++...++.......+.|++..+|.++.+++++.....++..++.++.|+++||+ |||+++..+..+..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 344455566666677665556778888888999999999999888888888999999999998 9999999888877777
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
..++.+.. . ..+...+.+..++.|++.+...+..+++..+..|+ +.|+.++++
T Consensus 341 ~~~~~~~~---~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~ 393 (471)
T PRK10504 341 SLLFMLVA---L-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD-------NLASSGNSL 393 (471)
T ss_pred HHHHHhcc---c-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-------HhccchHHH
Confidence 66655422 0 01333344567778888888888999999999888 448999999
Q ss_pred HHHHHHHHHHHHhhhhhheeccccc
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGW 202 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w 202 (572)
++....+|..+|+.+++.+.+..++
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998887665554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=110.36 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=137.9
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchhhHHH-HHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV-GRYRMIGFG-CFTC 94 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~~-~~~~ 94 (572)
|.++++.+..++--+.-|++..+.|.|+.+..|.|..++.+..+.+=.+...++++.||+|||++ |||...-+. ++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 56777888888888888999999999999999999999999999999999999999999999998 777655433 3333
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.++......+. ..+..+..+..+.+|+-.-+-.-..-....|..|. +.-|++
T Consensus 332 ~~~~~~~w~~~---------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK-------~AaGtA 383 (448)
T COG2271 332 TASLVLYWLAP---------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK-------KAAGTA 383 (448)
T ss_pred HHHHHHHHcCC---------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH-------hhccch
Confidence 33444444332 22566677777777765544434444556677777 446999
Q ss_pred HHHHHHHHHH-HHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhc
Q 008264 175 FSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (572)
Q Consensus 175 ~~~~~~~~~~-g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 223 (572)
.++...+..+ |+.++....+++.+.+||...|.+..+..+++.+++...
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999988 999999999999998999999998777777666655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-09 Score=109.81 Aligned_cols=178 Identities=14% Similarity=0.024 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
+.++...+.+++.-.++|....++.+++++..|+|.+..+++...|.++..++.+++|+++|| +.|+++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 346667778888888999999999999999999999999999999999999999999999999 788888888788777
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
..+.+.+..+ +.+...+..++.|++..........-.++..|+ .++.+.+
T Consensus 289 ~~l~l~~~~~----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~--------~~~~a~s 338 (394)
T COG2814 289 ALLALTFTGA----------------------SPALALALLFLWGFAFSPALQGLQTRLARLAPD--------AADLAGS 338 (394)
T ss_pred HHHHHHHhcc----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC--------chHHHHH
Confidence 7777665441 445555556666666665555555555553333 2688999
Q ss_pred HHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
++....|+|..+|..++|.+.+++|+....++.+++.++++++.+...+.
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888888777665543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-09 Score=114.74 Aligned_cols=181 Identities=17% Similarity=0.156 Sum_probs=145.8
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc--hhhHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY--RMIGFGCFTC 94 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~~~ 94 (572)
|.+..-++..++.+-+...+......|.++++|++..+...+....++...+++++.|++.||+ |.| +++..+++++
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILW 359 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Confidence 4444445566777778788888999999999999999999999999999999999999999998 999 8988887776
Q ss_pred HHHHHHHHH--hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 95 LLGMVLLWS--TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 95 ~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
.+-.+.-.+ ..+. .+..+.+.+++.-++.|+..|...+..-++.+++.|+++ .+
T Consensus 360 ~~i~~~g~~G~~~~~-----------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~-------e~ 415 (477)
T PF11700_consen 360 IIIPLYGLFGFWPSF-----------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR-------EA 415 (477)
T ss_pred HHHHHHHHHHhhhcc-----------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-------hh
Confidence 443222221 1100 112266778888899999999999999999999999944 68
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHHHh
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~ 222 (572)
..+++|....-..+.+||++.+.+.+..| -|+.+....++.++++++++.
T Consensus 416 efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 416 EFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887665 888888777777777766543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=117.12 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
..+.+++..++..++++......+.|.+..++ ++.+.+++.....++..++.++.++++||+ |||+++..+.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 34445556666666666555555556655566 566777788888899999999999999998 9999999998888888
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+...+.. .+.+.+++..++.|++.+...+...++++|..+.++...+++.++.++++
T Consensus 301 ~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 358 (437)
T TIGR00792 301 YLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV 358 (437)
T ss_pred HHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence 77665422 14455677788899999999999999999998765432223557999999
Q ss_pred HHHHHHHHHHHHhhhhhheecccccc
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWK 203 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~ 203 (572)
++....+|..+++.+.|++.+..||.
T Consensus 359 ~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 359 RTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999887766664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=111.02 Aligned_cols=184 Identities=14% Similarity=0.057 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|..|.+.+..+..-=++.++...++.|++++++.++.+++.+...+.+...+..++||+++||+ |.+|+.++....+++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 4566666666666556677888999999999999999999999999999999999999999998 999999999888888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+..+......... ...+....++..+.+++..|.-...+..++...+|++ -+.+.+
T Consensus 297 ~~~~l~~~~~~~~----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~--------~G~v~G 352 (417)
T COG2223 297 AAALLSLFLTGFG----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE--------TGAVTG 352 (417)
T ss_pred HHHHHHccccccc----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh--------hhHHHH
Confidence 8887776431110 0124455555566677777777778888888888773 478889
Q ss_pred HHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHHHhcCC
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
+.....++|+..-|...+...+..| ++..|++.....+++.+..+..+.
T Consensus 353 ~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 353 IVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888887776665 999999888888877776544443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-10 Score=109.28 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=109.0
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
.-+-++.+.+.+++.++..++.+.|+.-..+.+.++|++.||.+|-|..-.+-++...+|.++.+.-- .
T Consensus 64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg-i---------- 132 (459)
T KOG4686|consen 64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG-I---------- 132 (459)
T ss_pred hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-H----------
Confidence 34456667778888888999999999999999999999999998887765555556667777765422 0
Q ss_pred ccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee
Q 008264 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (572)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 197 (572)
....+++.++|++.|+|.-....+-+.+...+|.. ++.+.+++++.....+|...-..+-+++.
T Consensus 133 ---------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG-------KELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 133 ---------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG-------KELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred ---------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecC-------ccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 11678899999999999988888999999999988 44899999999999999987777777776
Q ss_pred cc
Q 008264 198 DN 199 (572)
Q Consensus 198 ~~ 199 (572)
+.
T Consensus 197 ~~ 198 (459)
T KOG4686|consen 197 DT 198 (459)
T ss_pred HH
Confidence 54
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-09 Score=111.14 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHhhcch-HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFT-PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
........++....+++.. ...|.|.++.+|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 3344445555555555555 6677777777999999999999999999999999999999998 9999998887777777
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.....+.. . +.+.+++..++.|++.+...+...+++.|.+|+ +.|++..++
T Consensus 291 ~~~~~~~~---------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~ 341 (365)
T TIGR00900 291 ILVVGLTP---------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-------ELLGRVFGA 341 (365)
T ss_pred HHHHHhhc---------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHH
Confidence 66665533 0 256677889999999999999999999999998 559999999
Q ss_pred HHHHHHHHHHHHhhhhhheecccc
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLG 201 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~ 201 (572)
++...++|..++|.++|++.+.+|
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998877543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=113.98 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH---
Q 008264 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG--- 97 (572)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g--- 97 (572)
...+..++.....+++..++|.|+++..|+++.+++++...+.++..++.+++|+++||+ |+++....+.....+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~ 333 (438)
T TIGR00712 255 YIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIA 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHH
Confidence 333445555566678888999999998999999999999999999999999999999998 8655333343222221
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+.+.... ..+.+...+..++.|.+..+..........|.+|+ +.|+++.++
T Consensus 334 ~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~ 385 (438)
T TIGR00712 334 VIVYWMNP---------------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAGF 385 (438)
T ss_pred HHHHHhcC---------------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh-------hheeeehhh
Confidence 11111100 00223333344445544333222333456788887 448999999
Q ss_pred HHHHHHHH-HHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcC
Q 008264 178 YYVFVSAS-SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 178 ~~~~~~~g-~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
.+...++| ..++|.+.|++.++.||..+|++..+..+++++..+...
T Consensus 386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 386 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 98888876 468999999999988999999887766666665554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=116.94 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=130.2
Q ss_pred ccccccCCCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 008264 4 EPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR 83 (572)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr 83 (572)
+|+.+.+..| .|......+..++...++++...+++.|+++.+|.++.+++.....+.++..++.+++|++.||+ ||
T Consensus 248 ~p~~~~~lf~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~ 324 (495)
T PRK14995 248 RPMIDMRLFT--HRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GL 324 (495)
T ss_pred CCCcCHHHhC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence 3444444333 23344444566666667777778899999999999999999999999999999999999999998 99
Q ss_pred chhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCC
Q 008264 84 YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGD 163 (572)
Q Consensus 84 r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 163 (572)
|+.+..+.++..++.+.+.... .. .+.+..+...++.|+|.|...+.....+.+..|+
T Consensus 325 ~~~~~~g~~~~~~~~~~l~~~~-~~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-- 382 (495)
T PRK14995 325 RLVATGGMALSALSFYGLAMTD-FS-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPP-- 382 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-CC-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH--
Confidence 9999989888888776665432 00 1334456678889999999999888888888887
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHhhhhhheec
Q 008264 164 GTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (572)
Q Consensus 164 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 198 (572)
++++.+.++++...++|..+|+.+.+.+.+
T Consensus 383 -----~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 383 -----EKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred -----HhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448999999999999999999999887754
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-09 Score=109.30 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
.+..++..++....+.....+++.|+. +.|.++.+.+.+.+...++..+..++.|++.||+ |+|+++..+.++..++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence 333444455555666666678888985 5899999999999988899999999999999998 99999999988888887
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
++.+.++ +.+.+++..++.|++.+...+....++.+. ++ +++++..+++
T Consensus 285 ~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~ 333 (382)
T PRK11128 285 GLMGSTT-----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG-------SEVIRLQALY 333 (382)
T ss_pred HHHHhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH-------hhhHHHHHHH
Confidence 7766544 677788889999999998888888887775 33 2257788876
Q ss_pred H-HHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHH
Q 008264 179 Y-VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (572)
Q Consensus 179 ~-~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~ 217 (572)
. ....+|..+||.++|++.+.+|+ ..|+..+++.++++
T Consensus 334 ~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 334 SALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 5 55677889999999999998887 45665555544443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=107.64 Aligned_cols=169 Identities=11% Similarity=-0.050 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
.+...+.....+.+....|.|+.+++|.++.+.++.......+..++.++.|+++||+ |||+.+..+.++..++.++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~ 299 (406)
T PRK15402 221 ALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAA 299 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455556678888889999999999888878888889999999999998 999999999888888777766
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
...... ..+...++++.++.|+|.+...+......... ++ ++|++..+.++...
T Consensus 300 ~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~-------~~~g~~~~~~~~~~ 353 (406)
T PRK15402 300 LATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SD-------VSKGTVSAAMGMLS 353 (406)
T ss_pred HHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cc-------ccccHHHHHHHHHH
Confidence 533110 11455567788889999988777766655433 22 23899999999999
Q ss_pred HHHHHHHhhhhhheecccccchhhhHHHHHHHHHHH
Q 008264 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 218 (572)
.+|..+|+.+.+++.+..++....+...+..++.+.
T Consensus 354 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 354 MLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 999999999999998877766555554444444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=116.24 Aligned_cols=154 Identities=12% Similarity=0.030 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
.....+..++..+.+++...++|.|+++.+|.++.+++++.....++..++.++.|++.||+ |||+++..+..+..++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~ 335 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF 335 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence 33445556666677788888899999999999999999999999999999999999999998 99999999988888887
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
.+....... ..+...++...++.|+|.+...+.......+.+|+ ++|+++.+++
T Consensus 336 ~~~~~~~~~-------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~ 389 (485)
T TIGR00711 336 YWRAFTFTP-------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-------HKIARGSSLS 389 (485)
T ss_pred HHHhccCCC-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHhHHHHHH
Confidence 766532100 11445566678889999998888888888888877 4589999999
Q ss_pred HHHHHHHHHHHhhhhhheecc
Q 008264 179 YVFVSASSIVAVTCIVYIQDN 199 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~~ 199 (572)
+...++|..+|+.+.+.+.++
T Consensus 390 ~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 390 NFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.4e-09 Score=109.39 Aligned_cols=175 Identities=15% Similarity=0.036 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTA-ATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
.+..+...++...+......+.+.|+.+ .|+++++.+++...... ...++.+++|++.||+ |+||++..+.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3334445556666666666777888865 79999999998887754 6667789999999998 9999998877665333
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
........+... ..+...++....+.+++.|...+...+...+..+++ +.+++.+++
T Consensus 288 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~~ 344 (390)
T TIGR02718 288 ALLWFAQAAFWL-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG------DQAGTDVTA 344 (390)
T ss_pred HHHHHHHHHccc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------cchHHHHHH
Confidence 322221110000 012333444455666777777788888877776552 337999999
Q ss_pred HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 218 (572)
++...++|..+||.++|++.+..||+..|++.+++.+++.+
T Consensus 345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999989999999887766555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-09 Score=111.97 Aligned_cols=163 Identities=11% Similarity=-0.042 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhh-HHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCR-EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI-GFGCFTCLL 96 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~~~~~~~ 96 (572)
.+...+..++....++++..++|.|+++ ..+.+..+++.+.....++..++.+++|+++||+ |||+.. ....++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~ 322 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAA 322 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHH
Confidence 3445556667777788888999999977 3578888999999999999999999999999998 987753 333333333
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+..+... . + +....+++..+.++|.....+.......|.+|+ ++|+++++
T Consensus 323 ~~~~~~~-~--~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~a~g 372 (412)
T TIGR02332 323 GWLLASA-T--D--------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-------QARAIAIA 372 (412)
T ss_pred HHHHHHh-c--C--------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-------HHHHHHHH
Confidence 3322211 1 0 111122222333334333334444444566666 55999999
Q ss_pred HHHHHHHHHHHHHhhhhhheeccc-ccchhhhHHHHH
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVI 212 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~ 212 (572)
+.+...++|..++|.+.+.+.+.. +|++.|++.++.
T Consensus 373 ~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 373 VINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999988876 499998876554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-09 Score=109.76 Aligned_cols=164 Identities=10% Similarity=0.043 Sum_probs=122.3
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHH
Q 008264 25 NEAFERMATVGFTPNMILYLCREY---NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~ 101 (572)
..++....+.......+.|+.+.+ +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++..++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~ 301 (396)
T TIGR00882 223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGS 301 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHH
Confidence 333333444444456778877665 55666778888888888999999999999998 99999999988888877665
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH-HHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYV 180 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~ 180 (572)
..+. +.+.+++.+++.|++.+........+..+..++ +.+++..+. ++.
T Consensus 302 ~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~at~~~~~~~~ 351 (396)
T TIGR00882 302 SFAT-----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV-------RLSATIYLIGFQF 351 (396)
T ss_pred HhcC-----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------ceEEEeehHHHHH
Confidence 5544 556677788888888766555555566665555 346666665 567
Q ss_pred HHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHH
Q 008264 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 181 ~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 219 (572)
...+|..+++.++|++.+..||+.+|.+.+++.++..+.
T Consensus 352 ~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 352 AKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 889999999999999999889999999877776655543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.1e-09 Score=112.22 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHH
Q 008264 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (572)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~ 101 (572)
++...++..+....+...+|.+.++.+|.++...|++.+++.++..++.++.+++.+|+ ++++.+..+.++++++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33444444455455556788888999999999999999999999999999999999997 99999999998888888888
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (572)
+++. +.+..++..++.|++........++.+....|+ +.||+.+++++..
T Consensus 302 al~~-----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~-------~~~GRv~si~~~~ 351 (524)
T PF05977_consen 302 ALSP-----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD-------WVRGRVFSIYQMV 351 (524)
T ss_pred hcch-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHhHHHHHHHHH
Confidence 8765 677778888999999999888899999999998 6699999999999
Q ss_pred HHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 182 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
...+..+|..+.|.+.+.+|-+..+.++++..+++.++.+
T Consensus 352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888776665555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=110.07 Aligned_cols=155 Identities=9% Similarity=0.035 Sum_probs=111.7
Q ss_pred HHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCC
Q 008264 42 LYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG 121 (572)
Q Consensus 42 ~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 121 (572)
+++.+++|.+....++......+...++.+++|+++||+ |||+++..+.++..++.++++.....+.
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------------ 361 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------------ 361 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc------------
Confidence 344567898888777777778888999999999999998 9999999999998888877765331000
Q ss_pred ccCCCcchhHHHHHHHHHHHHhccc-cchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh------
Q 008264 122 CESATWSQLMPLYFAFGLMSLGSGG-IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV------ 194 (572)
Q Consensus 122 ~~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~------ 194 (572)
.......+.++.+.+.+. ..|...++++|.+|. +.|+++.++.+...++|..+++.+.+
T Consensus 362 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~ 427 (479)
T PRK10077 362 -------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNS 427 (479)
T ss_pred -------ccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh-------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 111222334444444443 347788999999987 55999999999988888888865544
Q ss_pred heecccccchhhhHHHHHHHHHHHHHHhc
Q 008264 195 YIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (572)
Q Consensus 195 ~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 223 (572)
++.+.++|++.|++.++..+++.+..+..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 428 WLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred chhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 44467889989988776666555554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=106.82 Aligned_cols=163 Identities=12% Similarity=0.077 Sum_probs=113.3
Q ss_pred HHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhc
Q 008264 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (572)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~ 106 (572)
++.....+....++++|+.+.+|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+..+..++.++.....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (382)
T PRK10091 209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFFFGG 287 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455677888888999999999999999999999999999999998 9999999988887777755543220
Q ss_pred cCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHH
Q 008264 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (572)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 186 (572)
+.+...+..++.+.|.++..+.......+..+++ +.++.+ ..+...++|.
T Consensus 288 ----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~g~ 337 (382)
T PRK10091 288 ----------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGG------ELLGAA--GGQIAFNLGS 337 (382)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc------hHHHHH--HHHHHHHHHH
Confidence 2333445555566665544444443333333221 223433 3356678999
Q ss_pred HHHhhhhhheecc-cccchhhhHHHHHHHHHHHHH
Q 008264 187 IVAVTCIVYIQDN-LGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 187 ~~g~~~~~~l~~~-~~w~~~f~~~~~~~~~~~~~~ 220 (572)
.+||.++|++.+. .+|++.+.+.++..++....+
T Consensus 338 ~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 338 AIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 9999999998874 689999998876666555444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=107.34 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=105.2
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWT-AATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 116 (572)
...+.|+.+++|+++++.+++..... .+..++.+++|++.||+ |||+.+..+.++..+..+.+......+.
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~~------- 301 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTPK------- 301 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 34556777889999999999886654 56889999999999998 9999888777666655443322110111
Q ss_pred cccCCccCCCcchhHHHHHHH----HHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhh
Q 008264 117 QLRNGCESATWSQLMPLYFAF----GLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (572)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 192 (572)
+.+.+++.. +..|++.+...+....++.+.+|.+ ..+++....++|...++.+
T Consensus 302 ------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 302 ------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT-----------QYALLSALASVGRVYVGPT 358 (402)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 334444444 3455556666677777777766652 2355555567777766668
Q ss_pred hhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 193 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
+|++.+..||+..|.+.+++.+++++..+
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877776655543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-08 Score=106.94 Aligned_cols=205 Identities=17% Similarity=0.284 Sum_probs=149.1
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|..+.++....+.+-.+.+.......-+.+.++++.++.|++.+.+-++..+...+..|++-|. =|-|.+-+|.+++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 3344444455555555557778888889999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCC--------------------------CCcccccCCcc--CCCcc-hhHHHHHHHHHHHHhcccc
Q 008264 97 GMVLLWSTTILPGAKP--------------------------PACDQLRNGCE--SATWS-QLMPLYFAFGLMSLGSGGI 147 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~--~~~~~-~~~~l~~~~~l~g~g~g~~ 147 (572)
|++++++-+.+..-+. +.|+.=..++. ..+.. -+.+++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 9999886421111000 11111100111 11111 2336788899999999999
Q ss_pred chhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecc------------------c-ccchhhhH
Q 008264 148 RSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN------------------L-GWKVGFGV 208 (572)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------------------~-~w~~~f~~ 208 (572)
++...+|+=|-..+++ -...+++.+....+|.++|.+++++.... . .|...|++
T Consensus 255 ~tlGisYiDDnvk~~~-------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKN-------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred ccCCCccccccccccC-------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 9999999988776643 68899999999999999999988875321 1 37778888
Q ss_pred HHHHHHHHHHHHHhcCCceec
Q 008264 209 PAVIMLLSALSFFLASPFYVK 229 (572)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~ 229 (572)
.+.+.++..+-++...+++++
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHHHHhCcccCcc
Confidence 888877777766665554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.6e-09 Score=108.23 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH--HHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF--TCLL 96 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~--~~~~ 96 (572)
++.+.+..++.....+++..+.+.|+++.+|.++.+++.+...+.++..++.++.|+++||+.+||+....... ...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 33444455555666667778899999999999999999999999999999999999999986244443322211 1111
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+...... . + ..+.....+..++.|.......+....+..|.+|+ +.|+++.+
T Consensus 298 ~~~~~~~-~--~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g 349 (379)
T TIGR00881 298 SLLVYWL-N--P------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-------KAAGTAAG 349 (379)
T ss_pred HHHHHhc-C--c------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-------chhHHHHH
Confidence 1111111 0 0 01334445556666765555566667788999888 45899999
Q ss_pred HHHHHHHHHHHHHhhhhhheecccccchhh
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGF 206 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 206 (572)
+++...++|..++|.+.|++.+++||++.|
T Consensus 350 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 350 FVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 999999999999999999999999998765
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=97.68 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=130.6
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH-H
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF-T 93 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~-~ 93 (572)
+....+.+.++.++.-++.+=+...-+.++++++|+|+..++.+.+.....+....++.|.++||+ ||+-....+.. .
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACIL 340 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHH
Confidence 345667777777777777776667778899999999999999999999999999999999999998 99887777654 4
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 94 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
..++...+.++. +.-+++..++|+...+...+...+++...|| ++.|+
T Consensus 341 tl~~H~~l~Ft~-------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE-------~qLGT 388 (459)
T KOG4686|consen 341 TLLGHSGLFFTF-------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPE-------EQLGT 388 (459)
T ss_pred HHHHhhhHHhhh-------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-------HHhcc
Confidence 555666666654 1135677788888888777788888888888 55899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccc---cchhhhHHHHH
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAVI 212 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~---w~~~f~~~~~~ 212 (572)
+++..+...|+|..+-|++.|.+.++-| |--+|.+....
T Consensus 389 aygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 389 AYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred hHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 9999999999999999999999987544 43455544333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=108.80 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=105.4
Q ss_pred hcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008264 34 VGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPP 113 (572)
Q Consensus 34 ~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 113 (572)
+.+...+|.|+++ .|.++.+.+.+.+...++..++.++.|+++||+ |||+++..+.++..++.+...... .
T Consensus 248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---~---- 318 (426)
T PRK12307 248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---Q---- 318 (426)
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc---c----
Confidence 3455678888875 599999999999999999999999999999998 999999988877666554443221 0
Q ss_pred CcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhh
Q 008264 114 ACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193 (572)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 193 (572)
.....+.+..+..+.+..+..+..+.++.|.+|+ +.|+++.++.+...++|..++|.+.
T Consensus 319 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~~~~~gp~~~ 377 (426)
T PRK12307 319 --------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL-------EVRGLGTGLIYNLAATSGTFNSMAA 377 (426)
T ss_pred --------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH-------HHHhhhhhHHHHHHhHHHHHHHHHH
Confidence 0112122222222233333446677888999998 5589999999999999999999999
Q ss_pred hheecccccchhhh
Q 008264 194 VYIQDNLGWKVGFG 207 (572)
Q Consensus 194 ~~l~~~~~w~~~f~ 207 (572)
+++.+.+|+.....
T Consensus 378 g~l~~~~g~~~~~~ 391 (426)
T PRK12307 378 TWLGITMGLGAALT 391 (426)
T ss_pred HHHHHcccHHHHHH
Confidence 99998888665433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=104.55 Aligned_cols=149 Identities=12% Similarity=0.112 Sum_probs=117.3
Q ss_pred HhhcchHHHHHHHhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCC
Q 008264 32 ATVGFTPNMILYLCRE--YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPG 109 (572)
Q Consensus 32 ~~~~~~~~l~~yl~~~--l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (572)
.-.++..+++.|+.+. +|+++.+++...+.+..+..++.+++++++||+ |+||++.++..+..++.++.....
T Consensus 155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~~~~l~~~~~---- 229 (310)
T TIGR01272 155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVLLSIGAALTH---- 229 (310)
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 3345567899999854 799999999999999999999999999999998 999999988888777765554422
Q ss_pred CCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHH
Q 008264 110 AKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVA 189 (572)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 189 (572)
+.. ...+.++.|++.+..+|...++..+.+|++. +.+.++. ....+|+.+.
T Consensus 230 -------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~--------~~asai~-~~~~~Gg~i~ 280 (310)
T TIGR01272 230 -------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT--------SQGSGIL-CLAIVGGAIV 280 (310)
T ss_pred -------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------hhhHHHH-HHHHhcchHH
Confidence 111 2345668999999999999999999888743 3334443 5677999999
Q ss_pred hhhhhheecccccchhhhHHHHHHH
Q 008264 190 VTCIVYIQDNLGWKVGFGVPAVIML 214 (572)
Q Consensus 190 ~~~~~~l~~~~~w~~~f~~~~~~~~ 214 (572)
|.+.|.+.+..|.+.+|++..++.+
T Consensus 281 P~l~G~lad~~g~~~a~~v~~~~~~ 305 (310)
T TIGR01272 281 PLLQGSLADCLGIQLAFALPVPCYL 305 (310)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999998899999886655433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=111.23 Aligned_cols=161 Identities=10% Similarity=0.029 Sum_probs=106.7
Q ss_pred HHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcch-----hhH--HHHHHHHHHHHHHHH
Q 008264 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYR-----MIG--FGCFTCLLGMVLLWS 103 (572)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~-----~~~--~~~~~~~~g~~~~~~ 103 (572)
...+.+..+++.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+ ... ...++..+..++...
T Consensus 266 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~~~~~~ 344 (476)
T PLN00028 266 GVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFCIWLGR 344 (476)
T ss_pred HHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence 33345556788999989999999999999999999999999999999998 8762 222 222222122222221
Q ss_pred hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHH
Q 008264 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (572)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (572)
.. +....++..++.+++.+...+...+++.+..| +.|+...++.+...+
T Consensus 345 ~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~g~ 393 (476)
T PLN00028 345 AN-----------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR--------RSLGVISGLTGAGGN 393 (476)
T ss_pred cc-----------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh--------hhchhhhhhhhcccc
Confidence 11 33344445555666555555555566665543 237889998877778
Q ss_pred HHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcC
Q 008264 184 ASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 184 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
+|+.++|.+.+ .....+|+.+|++.+++.+++.+..++.+
T Consensus 394 lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 394 VGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 88887776654 22345799999998877777766655443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=107.41 Aligned_cols=143 Identities=12% Similarity=-0.017 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHH
Q 008264 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (572)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~ 101 (572)
.....++....++....+++ ++.+++|.++.+.+.+.....++..++.+++|+++||+ |||+.+....+.......+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (398)
T TIGR00895 255 LWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVLVG 332 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666 66778999999999999999999999999999999998 99855544433333332222
Q ss_pred HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH
Q 008264 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (572)
.... +....++..++.|++.+...+...+++.|.+|+ +.|+++.++++..
T Consensus 333 ~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~ 382 (398)
T TIGR00895 333 STLF-----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT-------AIRATGVGWAIGI 382 (398)
T ss_pred HHhh-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-------HHHHHHHHHHHHH
Confidence 2112 445567778899999999999999999999998 5599999999999
Q ss_pred HHHHHHHHhhhhhhe
Q 008264 182 VSASSIVAVTCIVYI 196 (572)
Q Consensus 182 ~~~g~~~g~~~~~~l 196 (572)
.++|..+||.++|++
T Consensus 383 ~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 383 GRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhHHhc
Confidence 999999999998875
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=108.13 Aligned_cols=172 Identities=12% Similarity=0.075 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhH--hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCR--EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
.+...+..++..+.+..+....+.|+.. +.+.+....+.+...+........++.|++.||+ |||+.+..+.++..+
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~ 286 (395)
T PRK10054 208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI 286 (395)
T ss_pred ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence 3444445555555554444556666643 4566677778888888777778888999999998 999999999888888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+.....++. .+.+.+.++.++.++|.+...|...+++.+..|+ +.|++.++
T Consensus 287 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~-------~~~~~~~~ 337 (395)
T PRK10054 287 GLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP-------GMKASYFS 337 (395)
T ss_pred HHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc-------ccceehHh
Confidence 877665432 1455567788899999998889999999998887 34788887
Q ss_pred HHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
.+. ...+|..+||.++|++.++.|....|++.+....++.+...
T Consensus 338 ~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 338 AQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 654 56689999999999999999988888876555554444444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-07 Score=90.98 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=110.6
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccC
Q 008264 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (572)
Q Consensus 45 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (572)
-+++|++..|.+.+.........+..++.|.++||+ ||||.-+..+++..++.+.-- +.
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~~------------------- 119 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-SS------------------- 119 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-cc-------------------
Confidence 368999999999999999999999999999999998 999999988888887775432 22
Q ss_pred CCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHH-HHHHHHHHHHhhhhhheeccccc-
Q 008264 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGW- 202 (572)
Q Consensus 125 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~w- 202 (572)
++..++++|++-|++......+--+.......+.+-++ +..+.-++... ....+-++.+.+++.++.+..+.
T Consensus 120 ----~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~--~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 120 ----NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ--EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 67889999999999999999988887765433222111 22344444333 22233445555555566655544
Q ss_pred -chhhhHHHHHHHHHHHHHHhcCC
Q 008264 203 -KVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 203 -~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
..+|..+.++.+++.+......+
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHhccc
Confidence 78999888877777666554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=110.97 Aligned_cols=167 Identities=17% Similarity=0.057 Sum_probs=108.7
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATN------------IIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~------------i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
..++..+.+|++..+.|.+++ +.|++..+++. ......++..++.+++++++||+ |||++++.+..
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence 334455677888777888875 66876543221 12233445666888999999998 99999988887
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
+..++..+.++..+... +...+...-+....+..+..+....+.+|.+|. +.|+
T Consensus 374 ~~~~~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~-------~~R~ 427 (502)
T TIGR00887 374 ILTVLFFVLGFAYNHLS-------------------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPT-------RYRS 427 (502)
T ss_pred HHHHHHHHHHHHHHhcc-------------------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCch-------hHHH
Confidence 77776666554320000 111111111122222223345667778999999 5699
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecc----------cccchhhhHHHHHHHHHHHH
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDN----------LGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~~w~~~f~~~~~~~~~~~~~ 219 (572)
++.++.+....+|+.++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 428 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 428 TAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988763 34556777766665555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-08 Score=106.91 Aligned_cols=163 Identities=11% Similarity=0.013 Sum_probs=121.9
Q ss_pred HHHHHHHHHhhcchHHHHHHH-hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 24 ANEAFERMATVGFTPNMILYL-CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
+..++.....++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ ||||++..+.++.+++..+..
T Consensus 265 l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~ 343 (438)
T PRK10133 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISA 343 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566778885 567899999999999999999999999999999998 999999988777766655544
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
+.. +. ..+....+.|+|.+...|...+...+.++++. +.+.++... .
T Consensus 344 ~~~-----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~--------~~as~l~~~-~ 390 (438)
T PRK10133 344 FAG-----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT--------KYGSSFIVM-T 390 (438)
T ss_pred HcC-----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh--------ccchhHHhH-H
Confidence 322 11 12456778999999999999999999887632 334444433 4
Q ss_pred HHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHH
Q 008264 183 SASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~ 220 (572)
.+|+.++|.+.|++.+..| -+..|+++.++.+......
T Consensus 391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~~ 429 (438)
T PRK10133 391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_pred hccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 4677788888898888887 7888988776665554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.2e-09 Score=110.86 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|......+..++...+++......+.|+++.+|.++...++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3344445555666666666666677788888898877666655555677888999999999998 999999999988888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+.+...+.. ..+.+.+++..++.|+|.+...+...++.+|..|.++...+++.++..++
T Consensus 307 ~~~~~~~~~---------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~ 365 (448)
T PRK09848 307 GYLLFFWVS---------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS 365 (448)
T ss_pred HHHHHHHcC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence 877766422 11455667778889999999999999999999887654333345688899
Q ss_pred HHHHHHHHHHHHHhhhhhheeccccc
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w 202 (572)
++.....+|..+|+.+.+.+.+..||
T Consensus 366 ~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 366 LFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998877554454
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=104.01 Aligned_cols=155 Identities=10% Similarity=0.015 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
.+.+.+...+....++++..++|.|+++ .|.++.+.+.+.+...++..++.++.|+++||+-+||+++..+.++..++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 3334444555566777777889999875 799999999999999999999999999999997235556677777777777
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
..+.+.. +.... ...++.|++.|...|...+.+.+..+++ ++++...++.
T Consensus 278 ~~~~~~~-----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~~~ 327 (355)
T TIGR00896 278 CGLLFAP-----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQA------AQAAALSAMA 327 (355)
T ss_pred HHHHHhh-----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH------HHHHHHHHHH
Confidence 6665432 11111 2456789999999998888777655442 3368888888
Q ss_pred HHHHHHHHHHHhhhhhheecccc-cch
Q 008264 179 YVFVSASSIVAVTCIVYIQDNLG-WKV 204 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~~~~-w~~ 204 (572)
+...++|..++|.+.|++.++.| |.+
T Consensus 328 ~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 328 QSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88889999999999999987665 543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=105.89 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=136.7
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|....+++..++..++........+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+||++..+.++..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 44556677788888888777778888888888877 5667788889999999999999999998 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+.++..+.. ..+.+.+++..++.|++.+...+...++++|..+.++...++++.+..++
T Consensus 303 ~~~~~~~~~---------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 303 GFLLLFFLG---------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHH---------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 988877754 12678889999999999999999999999999988765544466788899
Q ss_pred HHHHHHHHHHHHHhhhhhheecccccc
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGWK 203 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w~ 203 (572)
.+.....+|..+++.+.+.+.+..||.
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999888776544444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.4e-08 Score=100.96 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=112.8
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHh
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~ 104 (572)
...+....++......+.|+++++|.++.+.+.+.....++..++.++.|+++||+ |||+.+..+..+..++..++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 214 IYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEIT 292 (385)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666778888889999999999999999999999999999999998 99999998888877777666554
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 184 (572)
...+ ......++...++.|++.+...+.......|..|+ +|+++.++++.....
T Consensus 293 ~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~ 346 (385)
T TIGR00710 293 AILG------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH--------VAGTASALFGTLRLV 346 (385)
T ss_pred HHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--------cchHHHHHHHHHHHH
Confidence 3111 01334455567778899998888888888887653 278888987777654
Q ss_pred -HHHHHhhhhhheecccccchhhhH
Q 008264 185 -SSIVAVTCIVYIQDNLGWKVGFGV 208 (572)
Q Consensus 185 -g~~~g~~~~~~l~~~~~w~~~f~~ 208 (572)
|...++.+ +.+.+..+|...+..
T Consensus 347 ~g~i~~~~~-~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 347 LGAIVGYLV-SLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHH-HhccccChHHHHHHH
Confidence 56656654 455554455444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-08 Score=101.52 Aligned_cols=158 Identities=10% Similarity=0.036 Sum_probs=114.9
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH-HHHHHHh
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG-MVLLWST 104 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g-~~~~~~~ 104 (572)
.++....+++...++++++.+++|+++.+.+.+...+.++..++.++.|++.||. +|+..+. +..+..+. .++....
T Consensus 225 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~~~~~l~~~~ 302 (394)
T PRK10213 225 IFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAVSALVLTLWG 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHHHHHHHHHHh
Confidence 3343444455555654555567899999999999999999999999999999995 5544444 43333333 3333222
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 184 (572)
. +.+.+.++.++.|++.+...+..++++.+..|++ +++..+.+....++
T Consensus 303 ~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l 351 (394)
T PRK10213 303 S-----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ--------AEKAGSIQVAVIQL 351 (394)
T ss_pred h-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc--------HHHHHHHHHHHHHH
Confidence 2 4556777888899999999999998998887752 34566677778899
Q ss_pred HHHHHhhhhhheecccccchhhhHHHHHHHHH
Q 008264 185 SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 216 (572)
Q Consensus 185 g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~ 216 (572)
|..+|+.++|++.+..|++..++..++..++.
T Consensus 352 g~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 352 ANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 99999999999999899998888876654433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-08 Score=104.63 Aligned_cols=176 Identities=11% Similarity=-0.035 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhh--------HH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI--------GF 89 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~--------~~ 89 (572)
.++...+..++....++.+..++|.|+++.+|.+..+.+++.+...++..++.+++|+++||+ ++|+.. ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHH
Confidence 345556677777788888888999999999999999999999999999999999999999997 655422 11
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccccc
Q 008264 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (572)
Q Consensus 90 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (572)
+......+........ .. .+....++...+.+.+.++..+.......|..| +
T Consensus 341 ~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~ 392 (465)
T TIGR00894 341 GIGGLGPGIFAYALPY-LS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP--------R 392 (465)
T ss_pred HHHHHHHHHHHHHHHH-cC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh--------h
Confidence 1111111111111111 00 022333444445555555554554444445444 3
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhheecc---cccchhhhHHHHHHHHHHHHHHh
Q 008264 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDN---LGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 170 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
.++.+.++.+...++|+.++|.+.+++.+. .+|+.+|.+.++..+++.+....
T Consensus 393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 489999999999999999999999988764 34888998887777776655543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-08 Score=118.68 Aligned_cols=156 Identities=11% Similarity=0.079 Sum_probs=125.0
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHh
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETT-AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~-~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~ 104 (572)
.++.....+.+...++.|+++.+|++.. +.+++.+...++..++.++.|+++||+ ++|+++.++.++.+++.+++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~ 319 (1146)
T PRK08633 241 LSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLPTA 319 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHHHh
Confidence 3333444455667889999999999999 999999999999999999999999998 99999988888887777777654
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 184 (572)
. +.+.+++..++.|++.++..+...+++.+..|+ +.|++++++.+...++
T Consensus 320 ~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~rg~~~~~~~~~~~l 369 (1146)
T PRK08633 320 P-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE-------KELGKVLAANNFLQNV 369 (1146)
T ss_pred h-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc-------cchhhhhHHHHHHHHH
Confidence 4 556677788999999999999999999999988 4489999999999999
Q ss_pred HHHHHhhhhhheec-ccccchhhhHHHHH
Q 008264 185 SSIVAVTCIVYIQD-NLGWKVGFGVPAVI 212 (572)
Q Consensus 185 g~~~g~~~~~~l~~-~~~w~~~f~~~~~~ 212 (572)
|..+++.+++.+.. .+++...|++.+.+
T Consensus 370 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 370 GMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99888877766543 23455556554443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-10 Score=123.96 Aligned_cols=195 Identities=15% Similarity=0.261 Sum_probs=3.0
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhh
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT 105 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~ 105 (572)
..+.+...++.......-++++|+++.+++|++.+.+-++..+..++..++++|. -|-|.+.+|.+++++|++++++-+
T Consensus 11 ~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 11 LGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccH
Confidence 3333466777777788888999999999999999999999999999999999997 899999999999999999988543
Q ss_pred ccCCCC---------------CCCccc----c-cC-------CccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcc
Q 008264 106 ILPGAK---------------PPACDQ----L-RN-------GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 158 (572)
Q Consensus 106 ~~~~~~---------------~~~~~~----~-~~-------~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~ 158 (572)
.+...+ ...|+. . ++ +.......-...++++.++.|+|....++...+|+=|.
T Consensus 90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn 169 (539)
T PF03137_consen 90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN 169 (539)
T ss_dssp --------------------------------------------------------------SSS---------------
T ss_pred hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence 222111 111200 0 00 00111112346788999999999999999999999998
Q ss_pred cCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecc---------------------c-ccchhhhHHHHHHHHH
Q 008264 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN---------------------L-GWKVGFGVPAVIMLLS 216 (572)
Q Consensus 159 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------------------~-~w~~~f~~~~~~~~~~ 216 (572)
.++++ -+...++++....+|..+|.++++...+. . .|-..|++.+.+.++.
T Consensus 170 v~~~~-------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 170 VSKKN-------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 88844 57888999999999999999888765421 1 2666777766665555
Q ss_pred HHHHHhcCCcee
Q 008264 217 ALSFFLASPFYV 228 (572)
Q Consensus 217 ~~~~~~~~~~~~ 228 (572)
.+-++...++.+
T Consensus 243 aipl~~FPk~lp 254 (539)
T PF03137_consen 243 AIPLFFFPKKLP 254 (539)
T ss_dssp ------------
T ss_pred HHHHHcCCccCC
Confidence 544444444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=100.99 Aligned_cols=158 Identities=11% Similarity=-0.030 Sum_probs=119.7
Q ss_pred HHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCC
Q 008264 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (572)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~ 110 (572)
.........++.|+++.+|.++.+.|.+.....++..++.++.+++.||+ ++|+++..+.. ..+......+..
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~----- 291 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH----- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh-----
Confidence 33344445667788889999999999999999999999999999999998 99998887753 333333333332
Q ss_pred CCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHh
Q 008264 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (572)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 190 (572)
+.+...+..++.|++.+...+...+.+.+..|++ ..++++.++.+...++|..++.
T Consensus 292 ------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~------~~~g~~~a~~~~~~~~~~~~~~ 347 (393)
T PRK11195 292 ------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVL------VGAGHSIAVQNFNENLAMLLML 347 (393)
T ss_pred ------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCccc------ccchhHHHHHhHHHHHHHHHHH
Confidence 4455666777889999988888888888754431 2279999999999999999999
Q ss_pred hhhhheecccccchhhhHHHHHHHHHHHHH
Q 008264 191 TCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 191 ~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
.+.+.+ +.+|-+..+.+.....++.....
T Consensus 348 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 348 GLYSLL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 998866 45787877777666655554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-08 Score=103.60 Aligned_cols=153 Identities=14% Similarity=0.043 Sum_probs=111.4
Q ss_pred chHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 008264 36 FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (572)
Q Consensus 36 ~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 115 (572)
....+|.|+++..+ ++.+.+++.+...+.........+++.||.++.++.+..+.++..++.++++.+.
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------- 295 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------- 295 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence 34567888876555 7778888887777766655555566665543767777788878888877766544
Q ss_pred ccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhh
Q 008264 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (572)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 195 (572)
+...+++..++.++|.+...|...+++.+..|+ ++|+++++++....++|..+||.++|+
T Consensus 296 -------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 296 -------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA-------RARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc-------ccchhhhhHHHHHHHHHHHhcccchHH
Confidence 455566667788888888889999999999998 448999999999999999999999999
Q ss_pred eeccc---c-cchhhhHHHHHHHHHHHH
Q 008264 196 IQDNL---G-WKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 196 l~~~~---~-w~~~f~~~~~~~~~~~~~ 219 (572)
+.++. + ...+|++.++..++..+.
T Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 356 LFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 97753 2 345555544444444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.1e-08 Score=102.24 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
.+.+.++.++---++.++..++|.|+++.+. ............+...+..|++|+++||+ |+||++.++.++..++.
T Consensus 254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS 330 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence 4444444444333444555688899888763 33333334456788899999999999998 99999999988777766
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcc------------
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK------------ 166 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~------------ 166 (572)
....... |. .+..+...+.+..+...++.|.-..++..++.+.+|++...+
T Consensus 331 ~~~~l~l--p~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~ 393 (462)
T PRK15034 331 ALLFLTL--PG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQ 393 (462)
T ss_pred HHHHHHh--cc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHh
Confidence 4433221 11 011256666666666667777777888888888887511000
Q ss_pred --cccchhhhHHHHHHHHHHHHHHHhhhhhheecc-cccchhhhHHHHHHHHHHHHHHhcC
Q 008264 167 --SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 167 --~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
.+++-+.+.++......+|+.+-|.+.+...+. .++...|++..+..++++++.+...
T Consensus 394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 001356777788888888888888776665544 4588889888888887777665543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-08 Score=116.89 Aligned_cols=183 Identities=10% Similarity=-0.026 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
++..++..++..+..+++...+|.|+++.+|.++.+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 305 (1140)
T PRK06814 227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFG 305 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHH
Confidence 44444445555566666777899999999999999999999999999999999999999987 77777776666665555
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
+.+.++..... ..+. +...-.......+.+.++++.++.|++.+...+...+++.+..|+ +.|+++++.+
T Consensus 306 ~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~G~v~g~~ 375 (1140)
T PRK06814 306 LDLAFASSSVP-AEPA--QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP-------AHRARVIAAN 375 (1140)
T ss_pred HHHHhcccccc-cccc--cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc-------ccceeeeHHH
Confidence 54443200000 0000 000000000002456677888899999999999999999999999 4489999999
Q ss_pred HHHHHHHHHHHhhhhhheec-ccccchhhhHHHHH
Q 008264 179 YVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVI 212 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~-~~~w~~~f~~~~~~ 212 (572)
+...++|..+++.+.+.+.. ..++...|++.+.+
T Consensus 376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999888763 44666666554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.2e-08 Score=99.97 Aligned_cols=143 Identities=9% Similarity=0.026 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWT-AATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
.+.+.+..++..++++.....++.|+++ +|+++.+.+.+..+.. ++..++.+++|+++||+ |||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 4445555666778888888899999987 8999999998887665 57789999999999998 9999999888887776
Q ss_pred HHHHHHhh-ccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 98 MVLLWSTT-ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
..+..+.. +... ...+..+.+.++...++.+++.+...+...+++.+.+|+ ++|++.++
T Consensus 289 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g 348 (356)
T TIGR00901 289 NAGFVWLASNGHH-------------DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP-------KFGATQMA 348 (356)
T ss_pred HHHHHHHHhcCcc-------------cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-------CccHHHHH
Confidence 66554421 1100 000001446677778889999999999999999999999 55899999
Q ss_pred HHHHHHH
Q 008264 177 WYYVFVS 183 (572)
Q Consensus 177 ~~~~~~~ 183 (572)
+++...+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 9877654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.2e-08 Score=104.76 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--chhhHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR--YRMIGFGCFTC 94 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr--r~~~~~~~~~~ 94 (572)
+..+..++...+..++++....+++.|.. .++.+..+++.+.++......++.++.|+++|+. .. +.+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 44555666777788888888888888877 8899999999999999999999999999999997 73 33444555556
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
.++...+.+.. ++..+++.-++.|+..|.........+.|..+. ++...+
T Consensus 376 gl~~~~~p~~~-----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-------~~l~~a 425 (509)
T KOG2504|consen 376 GLARLFLPFAT-----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-------EKLSNA 425 (509)
T ss_pred HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-------hhcchH
Confidence 66665666544 677888899999999999988888899999988 448999
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHHHhcC
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
+++......++.++||.+.|++.+..+ |...|+..++..+++...++..+
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999988776 99999999988888876655544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-08 Score=106.15 Aligned_cols=141 Identities=12% Similarity=0.019 Sum_probs=102.9
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCC
Q 008264 47 EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESAT 126 (572)
Q Consensus 47 ~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (572)
.++.+.. +......+....+.+++++++||+ |||+++.++.++..++.+++.+..+
T Consensus 352 ~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~-------------------- 407 (505)
T TIGR00898 352 NLGGNIY---LDLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV-------------------- 407 (505)
T ss_pred ccCCChH---HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------
Confidence 4454433 233345667778889999999998 9999999998888888777665331
Q ss_pred cchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhh
Q 008264 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF 206 (572)
Q Consensus 127 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 206 (572)
......++..++.+++.+...+..+++.+|.+|+ +.|+++.++.+....+|..++|.+.+ +. ..++..++
T Consensus 408 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~ 477 (505)
T TIGR00898 408 -DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT-------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPL 477 (505)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHH
Confidence 0123344455666677777788899999999998 55999999999999999999999888 43 35666777
Q ss_pred hHHHHHHHHHHHHHH
Q 008264 207 GVPAVIMLLSALSFF 221 (572)
Q Consensus 207 ~~~~~~~~~~~~~~~ 221 (572)
.+.++..+++.+..+
T Consensus 478 ~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 478 VLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666555544443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=96.94 Aligned_cols=172 Identities=15% Similarity=0.175 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
.+..-++..++.+=+..........|-..++|++..+..++....++...+++++.|++.||+ |.|+++..++++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 333334455555555566677788898899999999999999999999999999999999998 9999999999888776
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+..-+.. ....+++.-++.|...|+..+.+-++.++..|+++ -++.+++
T Consensus 332 ~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k-------~~~fFgl 381 (438)
T COG2270 332 ALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK-------EGRFFGL 381 (438)
T ss_pred HHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc-------ccceeeh
Confidence 65554432 23346666788999999999999999999999965 4889999
Q ss_pred HHHHHHHHHHHHhhhhhheeccc-ccchhhhHHHHHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~ 220 (572)
|.......+.+||.+.+.+.+.. +-|..+....++.+++++.+
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 99999999999999988776543 46776665555555555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-07 Score=95.65 Aligned_cols=167 Identities=13% Similarity=-0.016 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc---hhhHH-HHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY---RMIGF-GCF 92 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr---~~~~~-~~~ 92 (572)
|..+.+.+..++....+|++..++|.|+++ .|++.. ++.......+... +..++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 345566677888888899999999999965 677765 5555444444444 4457888886 554 33232 333
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
+.++.....+.+. +....++...+.+++.....+...++.+|.+|+ +.|+
T Consensus 266 ~~a~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~rg 315 (368)
T TIGR00903 266 LIAAFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK-------ELHG 315 (368)
T ss_pred HHHHHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch-------hhcC
Confidence 3333333333222 222334445566677777778888999999999 5599
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
++.++.+...++|+..+|.+.+.+.. +.+..|.+.++..+++.+..+
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988876653 666777777666666555543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=101.29 Aligned_cols=160 Identities=11% Similarity=0.047 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHH
Q 008264 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (572)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~ 100 (572)
.+++..++...+........+.|.+..++ +++..+.+.....+...++.++.++++||+ |+|+.+..+.++..++...
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~ 310 (444)
T PRK09669 233 IMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSAL 310 (444)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence 33334444444433222333333333333 333444556666777888889999999998 9999999887666554433
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
..+.. ..+.+.+++..++.|++.+...+...++++|..+.++...+++..+..++.+..
T Consensus 311 ~~~~~---------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~ 369 (444)
T PRK09669 311 IFFIP---------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLF 369 (444)
T ss_pred HHHhC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHH
Confidence 32211 115666777888999999999999999999998865543333456778889999
Q ss_pred HHHHHHHHHhhhhhheecccccc
Q 008264 181 FVSASSIVAVTCIVYIQDNLGWK 203 (572)
Q Consensus 181 ~~~~g~~~g~~~~~~l~~~~~w~ 203 (572)
...+|..+|+.++|++.+..||.
T Consensus 370 ~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 370 AIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999998887766663
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-07 Score=101.56 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=119.8
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|....+++..++...+.+......+.|.+..++ +....+.+.....+...++.++.++++||+ |||+++.++..+..+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 445555666666667666665555544443444 556666777777788899999999999998 999999988877776
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+.+......-.+ ..+.+.+++.-++.|++.+...+...++++|..+.++-..+++..+..++
T Consensus 309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 665554321000 11455667777889999999999999999999886543333345677888
Q ss_pred HHHHHHHHHHHHHhhhhhheeccccc
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w 202 (572)
...+...+|..+|+.+.|++.+..||
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998887665555
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-06 Score=93.08 Aligned_cols=140 Identities=8% Similarity=-0.005 Sum_probs=91.2
Q ss_pred chHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 008264 36 FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (572)
Q Consensus 36 ~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 115 (572)
+....+.|+++++|+++.+.+.+.....++..++.++.|++.||+ |||+++..+..+..++.+...+..
T Consensus 222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---------- 290 (392)
T PRK10473 222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP---------- 290 (392)
T ss_pred HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 334556778889999999999999999999999999999999998 999999999888888887776644
Q ss_pred ccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhh
Q 008264 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (572)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 195 (572)
+....+....+.+.|.+...+... ..+..|.+++ -+.+.+ ...++..+|+.++++
T Consensus 291 -------------~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~------~g~~~~----~~~~~~~~g~~~~~~ 345 (392)
T PRK10473 291 -------------SHAVSLFGITLICAGFSVGFGVAM--SQALGPFSLR------AGVASS----TLGIAQVCGSSLWIW 345 (392)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhHHHH--HHHhccCccc------ccHHHH----HHHHHHHHHHHHHHH
Confidence 222233334444444443333322 2333343221 233333 344566666666666
Q ss_pred eecccccchhhhHHHH
Q 008264 196 IQDNLGWKVGFGVPAV 211 (572)
Q Consensus 196 l~~~~~w~~~f~~~~~ 211 (572)
+.+..|+.....+.+.
T Consensus 346 l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 346 LAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHhccchhHHHHHH
Confidence 6666677654444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-06 Score=91.10 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHh
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~ 104 (572)
...+...+.+.+....+.++.+.+|.++.+.+.+.....++..++.+++|+++||+ |||+++..+..+..+..+.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 280 (377)
T PRK11102 202 ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVVS 280 (377)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555667778888999999999999999999999999999999998 99999998877654433332221
Q ss_pred hccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH-HH
Q 008264 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF-VS 183 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~ 183 (572)
...+ .+.+...++..+.+.+.+...+.....+.|..|+ .++++.+..... ..
T Consensus 281 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~ 333 (377)
T PRK11102 281 ALLD-------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH--------MAGTASSLAGTLRFG 333 (377)
T ss_pred HHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc--------cchHHHHHHHHHHHH
Confidence 1000 0233344444455555555566666666666553 267777775544 35
Q ss_pred HHHHHHhhhhh
Q 008264 184 ASSIVAVTCIV 194 (572)
Q Consensus 184 ~g~~~g~~~~~ 194 (572)
+|..+++.+++
T Consensus 334 ~g~~~g~~~~~ 344 (377)
T PRK11102 334 IGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHh
Confidence 67777776544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-07 Score=95.19 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHH
Q 008264 22 IIANEAFERMATVGFTPNMILYLCREYNME-TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (572)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~ 100 (572)
.+...+...+.++....+++.|+.+++|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+..........++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence 344444455566667788999999999999 89999999999999999999999999998 9988888887777776666
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
+..... ..+....++..++.|++.+...+...+++.|.+|+ ++|+++.++++.
T Consensus 290 ~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~ 342 (352)
T PF07690_consen 290 LLLLPF--------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP-------EYRGTAFGLFNS 342 (352)
T ss_dssp HCCSHH--------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-------CHHHHHHHHHHH
T ss_pred HHHHHH--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence 544331 11445566678889999999999999999999988 559999999999
Q ss_pred HHHHHHHHHh
Q 008264 181 FVSASSIVAV 190 (572)
Q Consensus 181 ~~~~g~~~g~ 190 (572)
..++|..+||
T Consensus 343 ~~~~~~~igP 352 (352)
T PF07690_consen 343 IGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=93.26 Aligned_cols=189 Identities=13% Similarity=0.026 Sum_probs=134.1
Q ss_pred CCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHH
Q 008264 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (572)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 93 (572)
..++.....+...+..+++..-...+....+-++-|++..++.+.+........+..+++.++.||+ |||+.++.+..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~ 344 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL 344 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 3445566666777777777666666667777778899999999999999999999999999999998 999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhH-HHHHHHHHHH--HhccccchhhhhhhhcccCCCCCcccccc
Q 008264 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLM-PLYFAFGLMS--LGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (572)
Q Consensus 94 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (572)
+.+..+++..+..+... . ..... ..+++.++-. .+.| ..|...-+.+|.+|.+.
T Consensus 345 ~~~~~~~~~~~~~l~~~-----------~----~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~------- 401 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNS-----------F----GSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSA------- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHH-----------h----hhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccc-------
Confidence 88888777665422210 0 00011 1233444433 3333 25788889999999944
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCce
Q 008264 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFY 227 (572)
Q Consensus 171 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 227 (572)
|.+++++.+....+...+-......+.+..|= +.|++..+...+..+..+...|+.
T Consensus 402 R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 402 RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 89999988887777777666666777776664 566666666666666666655543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-06 Score=89.64 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=104.4
Q ss_pred HHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCC
Q 008264 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (572)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~ 110 (572)
..++.+....|.|++ ++|.++.+.++......++..++.++++++.||+ |||+++....+...++.+.+.......
T Consensus 217 ~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (401)
T PRK11043 217 AAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLS-- 292 (401)
T ss_pred HHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 344455566777765 5799999999888888888999999999999998 999987666655555544333222000
Q ss_pred CCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHh
Q 008264 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (572)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 190 (572)
..+....++...+.|++.+...|...+...+..|+ .|+++.++++.....++..++
T Consensus 293 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~g~~~~~~~~~~~~~~ 348 (401)
T PRK11043 293 ----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ--------ATGKAAALQNTLQLGLCFLAS 348 (401)
T ss_pred ----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc--------cChHHHHHHHHHHHHHHHHHH
Confidence 01334455667778888898889888887776653 279999999888888888888
Q ss_pred hhhhheecccccch
Q 008264 191 TCIVYIQDNLGWKV 204 (572)
Q Consensus 191 ~~~~~l~~~~~w~~ 204 (572)
.+.+.+.+......
T Consensus 349 ~~~g~l~~~~~~~~ 362 (401)
T PRK11043 349 LLVSALISTPLLTT 362 (401)
T ss_pred HHHHHccCCChhHH
Confidence 88887766443433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.4e-07 Score=90.09 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=116.3
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhc-----------------C--CChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY-----------------N--METTAATNIIFIWTAATNFLPIVGALLA 77 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-----------------~--~~~~~~~~i~~~~~~~~~~~~~~~G~la 77 (572)
|..+.+..+.+.+++.||++.-......+... + .+...--.=..+.++....+.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 34455677899999999998754443333211 1 1111111123446778889999999999
Q ss_pred hhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhc
Q 008264 78 DSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 157 (572)
Q Consensus 78 Dr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~ 157 (572)
||+ |||+++..+.+++++..+++....+ . .....+++.+|+... +.+.+++.|-.|
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~------------------r-n~~tvllf~arafis----g~fqvaYvYtPE 461 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT------------------R-NAYTVLLFTARAFIS----GAFQVAYVYTPE 461 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC------------------c-chhHHHHHHHHHHHh----chheEEEEecCc
Confidence 997 9999999999999988877765330 0 112334566677664 345677899999
Q ss_pred ccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008264 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 158 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
.+|. ..|+.+.+.-.....+|+++.|.++ +....+-..+..+.+.+++++.+...
T Consensus 462 VyPT-------avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavc 516 (528)
T KOG0253|consen 462 VYPT-------AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVC 516 (528)
T ss_pred ccch-------hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHhe
Confidence 9999 5589999998889999999999888 33334444455555555565555543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-06 Score=89.28 Aligned_cols=176 Identities=11% Similarity=0.046 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHH
Q 008264 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (572)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~ 100 (572)
..++..++...++-....+.+.|+++.-|.+....+.+.+...+.-.+.-...+++..|+ |-|+++.++.+..++=..+
T Consensus 211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 334455555665555567788898766557888888888888888999999999999998 9999999999998887777
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
.+...+ |. ............+.|+..|....+...++.+..|+ +.|+++.+++..
T Consensus 290 ~a~~~~-~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~-------~~~at~Q~l~~~ 344 (400)
T PF03825_consen 290 YAYFSD-PW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP-------ELRATAQGLYSA 344 (400)
T ss_pred HHHhcC-Cc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-------cchHHHHHHHHH
Confidence 776520 00 00112233345679999999999999999999999 558999999877
Q ss_pred H-HHHHHHHHhhhhhheecccccc------hhhhHHHHHHHHHHHHHHh
Q 008264 181 F-VSASSIVAVTCIVYIQDNLGWK------VGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 181 ~-~~~g~~~g~~~~~~l~~~~~w~------~~f~~~~~~~~~~~~~~~~ 222 (572)
. ..+|..+|..++|++.+++|-+ ..+.++++..++..+.++.
T Consensus 345 ~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 345 LSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5 5799999999999999877644 4455555554444444443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.6e-06 Score=89.71 Aligned_cols=159 Identities=10% Similarity=-0.049 Sum_probs=113.9
Q ss_pred HHHHHHHHhhcchHHHHHHHhHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHH
Q 008264 25 NEAFERMATVGFTPNMILYLCRE-YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~-l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~ 103 (572)
..++.-....+...+++.|+++. .+.+...++...+.+.....++.+++|+++||+ ++||++.++.++..+..++...
T Consensus 240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~ 318 (410)
T TIGR00885 240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIF 318 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333345557788888653 355666666677777788999999999999998 9999998888887777766665
Q ss_pred hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHH
Q 008264 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (572)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (572)
.. +.. ..+..++.|+..+.++|...++..+..+++. .. +.+.... ..
T Consensus 319 ~~-----------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~-~s~~l~~-~~ 365 (410)
T TIGR00885 319 AG-----------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KY-GAAGLVM-AI 365 (410)
T ss_pred cC-----------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hh-hHHHHHH-HH
Confidence 33 112 3566778889999999999999999988732 22 2222222 33
Q ss_pred HHHHHHhhhhhheeccc------ccchhhhHHHHHHHHHH
Q 008264 184 ASSIVAVTCIVYIQDNL------GWKVGFGVPAVIMLLSA 217 (572)
Q Consensus 184 ~g~~~g~~~~~~l~~~~------~w~~~f~~~~~~~~~~~ 217 (572)
+|+.+.|.+.|++.+.. +.+..|+++.++.+...
T Consensus 366 ~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (410)
T TIGR00885 366 IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIF 405 (410)
T ss_pred hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHHH
Confidence 99999999999998853 58889998877665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=90.82 Aligned_cols=137 Identities=11% Similarity=0.086 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHH
Q 008264 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (572)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~ 100 (572)
.+.+..++.....+.+..+++.|+++.+|.++.+++.+.....+...++.+++|+++||+ |||+.+..+..+...+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~ 307 (366)
T TIGR00886 229 ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAFL 307 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHHH
Confidence 334444455555667778899999999999999999999999999999999999999998 9999888887776666666
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
+.+.... ..+....++...+.+++.|...+...+++++..|+ .++++.++.+.
T Consensus 308 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~g~~~g~~~~ 360 (366)
T TIGR00886 308 VVLGLVS-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR--------ATGAVSGLVGA 360 (366)
T ss_pred HHhcCCC-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh--------hcccHHHHHHH
Confidence 5543200 00344444555556666666667777788887763 27888988877
Q ss_pred HHHHH
Q 008264 181 FVSAS 185 (572)
Q Consensus 181 ~~~~g 185 (572)
..++|
T Consensus 361 ~~~~g 365 (366)
T TIGR00886 361 IGNLG 365 (366)
T ss_pred hccCC
Confidence 77665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-06 Score=89.90 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=130.0
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|....+++..++...+.......++.|.+..+|.++....+.......+..++.++..++.+|+ |+|+++.++.++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence 4444555566677666666667778888888899999988888888888889899999999998 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+.+...+.. ..+..+.++..++.++|.+...+...++++|..+.+|-..+++.-|..++
T Consensus 315 ~~~~~~f~~---------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s 373 (467)
T COG2211 315 GYLLLYFTP---------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYS 373 (467)
T ss_pred HHHHHHhhc---------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHH
Confidence 999988754 22678888999999999999999999999998877665444455566677
Q ss_pred HHHHHHHHHHHHHhhhhhheecccc
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLG 201 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~ 201 (572)
.+....=+|..++..+.|++....|
T Consensus 374 ~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 374 GMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7777777788877777666544333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-05 Score=80.93 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=87.8
Q ss_pred hhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhe
Q 008264 388 SKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQT 467 (572)
Q Consensus 388 ~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~ 467 (572)
.|+.+| ++..+.+..|+.+..+=++..++++ ++|.+.+.-++.|+..+..+.+..
T Consensus 427 ~klI~k---iGHv~v~~lgLa~~~~Rf~~~S~L~----------------------n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 427 FKLIEK---IGHVNVMYLGLACNVGRFLYYSYLQ----------------------NPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred HHHHHH---hcccceeeehhhHHHHHHHHHHHhc----------------------CchheeeHHHHHHHHHHHHHHHHH
Confidence 344444 6666778888888888888888775 777777778999999999999999
Q ss_pred eeecccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008264 468 EFYYTELPKSMSSIASTLSGAG-LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA 546 (572)
Q Consensus 468 ~~~~~~~P~~~rg~~~g~~~~~-~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~ 546 (572)
+|+...+|+++|.+++++.... ..+|-.+|+.+.+.+....+ ---.|..+++.+++.+++...
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------------~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------------ARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh----------------hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764 34666666666555543221 123466677777766665554
Q ss_pred hhh
Q 008264 547 CCK 549 (572)
Q Consensus 547 ~~~ 549 (572)
.-+
T Consensus 546 iq~ 548 (618)
T KOG3762|consen 546 IQL 548 (618)
T ss_pred hhh
Confidence 433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=81.60 Aligned_cols=166 Identities=15% Similarity=0.101 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHH
Q 008264 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (572)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~ 99 (572)
+.+.+..=+..+.+|.+..++|.++. +.|+|+.++|++.+..++......+...++++|.--+|+........+.+|..
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~ 289 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV 289 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 34444444567788999999999986 55999999999999999999999999999999875677777777888888887
Q ss_pred HHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHH
Q 008264 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (572)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (572)
.+.+.. . +...+. -+++|+|.|+.+|....++.+..++.+. -++..++.+
T Consensus 290 G~~~~P---~-------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~------Aa~LSgmaQ 339 (395)
T COG2807 290 GLLLAP---G-------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI------AAALSGMAQ 339 (395)
T ss_pred HHHHhh---h-------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH------HHHHHHHhh
Confidence 776543 1 223233 4899999999999999999988776432 455555666
Q ss_pred HHHHHHHHHHhhhhhheeccc-ccchhhhHHHHHHHHH
Q 008264 180 VFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLS 216 (572)
Q Consensus 180 ~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~ 216 (572)
-...+=+..||.+.|++.|.. +|+..+..-+...++.
T Consensus 340 g~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m 377 (395)
T COG2807 340 GVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM 377 (395)
T ss_pred hhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence 666666777899999997754 6988776655444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-06 Score=89.87 Aligned_cols=161 Identities=7% Similarity=0.022 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
...++...++..+...........|.+..+|. +...+.+...+.++..++.+++++++||+ |+|+++..+..+..+..
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~ 307 (460)
T PRK11462 230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS 307 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 33333344444444443334444444434443 33445677778888899999999999998 99998876555444433
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
.+..+.. . .+...+++..++.|++.+...+...++++|..+.++-..+++.-+..++..
T Consensus 308 ~~~~~~~---~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~ 366 (460)
T PRK11462 308 LAMFFVP---M------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGT 366 (460)
T ss_pred HHHHHhc---h------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHH
Confidence 3332211 0 123334455566788888877777889998877654322223334556777
Q ss_pred HHHHHHHHHHHhhhhhheeccccc
Q 008264 179 YVFVSASSIVAVTCIVYIQDNLGW 202 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~~~~w 202 (572)
.....+|..+|+.+.|++.+..||
T Consensus 367 ~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 367 LFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788889999998888776554454
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-05 Score=83.22 Aligned_cols=137 Identities=10% Similarity=0.063 Sum_probs=97.7
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
...+.|+++.+|.++.+.+++......+..++.++.+++.||+ ||+... +.....++.+...... ..
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~-~~--------- 294 (394)
T PRK11652 228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPG-WF--------- 294 (394)
T ss_pred HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH-Hh---------
Confidence 3456677888999999999998888888888999999999998 743322 3222222222221111 00
Q ss_pred ccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee
Q 008264 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (572)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 197 (572)
...+.+.+++..++.++|.+...|...++..|.+|+ .+++..++.+...++|..+++.+++++.
T Consensus 295 --------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 295 --------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY--------LAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------cchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 011345567778899999999999999999888764 2688889998889999999999998886
Q ss_pred cccccc
Q 008264 198 DNLGWK 203 (572)
Q Consensus 198 ~~~~w~ 203 (572)
+...+.
T Consensus 359 ~~~~~~ 364 (394)
T PRK11652 359 QTGQFS 364 (394)
T ss_pred CCchHH
Confidence 654443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.5e-06 Score=89.49 Aligned_cols=186 Identities=10% Similarity=0.070 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhH----HHHHHHHHHHHHHHHHHHHHH----HhhhccCcchhh--H
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTA----ATNIIFIWTAATNFLPIVGAL----LADSYVGRYRMI--G 88 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~----~~~i~~~~~~~~~~~~~~~G~----laDr~~Grr~~~--~ 88 (572)
.+.+++...+....+......++.|.++..+.+... .+++.+...+...+.+++-.+ +.||..+.+... .
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 334455555666776667777888887765544222 567777777777777776554 444411333333 6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccc
Q 008264 89 FGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (572)
Q Consensus 89 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (572)
+|.++..++....+++..... .....+.+.++...++.++|.....|..++++.+..|+
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~------- 412 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFAD--------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ------- 412 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------
Confidence 678888888777665321100 00123788899999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 169 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
+.|++.+++++....+|..+++.+........+|...|...++..++..++++...|
T Consensus 413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 559999999999999999999988887666667888887777666655555544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00033 Score=74.41 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHH
Q 008264 59 IFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFG 138 (572)
Q Consensus 59 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (572)
..+......+.+++++-+.|+. |.|..+.++...+..-.+..-+- |-..+++.-+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfssa 110 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSSA 110 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHHH
Confidence 6777888999999999999997 99999999977766544433321 5667899999
Q ss_pred HHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhh
Q 008264 139 LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193 (572)
Q Consensus 139 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 193 (572)
+.|+|.+..+..--.++.+..++ +.+++-.++.-.....+.++|..+.
T Consensus 111 llG~Gaallw~GqG~ylt~~st~-------~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 111 LLGFGAALLWTGQGGYLTSNSTR-------ETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred HhhhhHHheecccceehhhcCCh-------hhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 99999999999999999988777 4467777776666677777665443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.5e-06 Score=87.63 Aligned_cols=178 Identities=13% Similarity=0.058 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------chhhHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-------YRMIGFG 90 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-------r~~~~~~ 90 (572)
.++.+.+..+++.++++.+..++|.|+.+.+|++-.+.|++.+.-.+.+.+..+++|+++||. -+ +|-+.-+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHHh
Confidence 355677899999999999999999999999999999999999999999999999999999997 33 1222222
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccc
Q 008264 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (572)
Q Consensus 91 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (572)
......+..+...+. .+. + ........+.++..+.|+..++.. .-..|..| +.
T Consensus 338 i~~~~~ai~l~~l~~-~~~------~--------~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~ap--------q~ 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAF-TSD------E--------HRLLAVILLTIAIGLSGFNISGFY----KNHQDIAP--------QH 390 (466)
T ss_pred HHHHHHHHHHHeeee-cCC------C--------cchHHHHHHHHHHHHcccchhhhH----hhhhhccc--------hH
Confidence 222222322222221 110 0 000112222222222333222221 21222222 33
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhheecc---cccchhhhHHHHHHHHHHHHHHhc
Q 008264 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDN---LGWKVGFGVPAVIMLLSALSFFLA 223 (572)
Q Consensus 171 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~ 223 (572)
-+..+++.+...++...++|.+.+.+.++ ..|+++|++.++..+++.+.+.+.
T Consensus 391 a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 57888999999999999999999988742 379999999998888887666544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=79.13 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=111.5
Q ss_pred HHHHHHhHhcCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 008264 39 NMILYLCREYNMET--TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (572)
Q Consensus 39 ~l~~yl~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 116 (572)
..+.+ ..+++.+. .+.+++.+.+.+...++.++.|+++||+ |||+.+..+.....++.+++++..+
T Consensus 24 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------- 91 (338)
T COG0477 24 ALPLL-LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------- 91 (338)
T ss_pred HHHHH-HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc----------
Confidence 34444 34555555 5788999999999999999999999998 9999988888766666666665441
Q ss_pred cccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH-HHHHHHHHHhhhhhh
Q 008264 117 QLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV-FVSASSIVAVTCIVY 195 (572)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~ 195 (572)
.+...+++.|..+|++.+...+...+++.|.+|+ . +.|+...+.... ...+|..+++.+++.
T Consensus 92 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T COG0477 92 -----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-----TERGLAVGLVTLGAGALGLALGPLLAGL 154 (338)
T ss_pred -----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1577889999999999999999999999999887 2 237888888777 578888888877766
Q ss_pred eecc--cccchhhhHHHHHH
Q 008264 196 IQDN--LGWKVGFGVPAVIM 213 (572)
Q Consensus 196 l~~~--~~w~~~f~~~~~~~ 213 (572)
+... .+|++.|.+.....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 155 LLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHhcchHHHHHHHHHHH
Confidence 5543 57888666655443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-05 Score=74.90 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=72.2
Q ss_pred HHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccC
Q 008264 41 ILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120 (572)
Q Consensus 41 ~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 120 (572)
..|+.+++|....+.+.+..+......+...+.|-++|+- ||||.- +.+++.+++++.+...|+
T Consensus 60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKrac----vtycitYiLsCiTKhSpq----------- 123 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRAC----VTYCITYILSCITKHSPQ----------- 123 (454)
T ss_pred eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccce----eeehHHHHHHHHhhcCCc-----------
Confidence 4566678999999999988888888888888889999997 999964 455677777777764454
Q ss_pred CccCCCcchhHHHHHHHHHHHHhccccchhhhhhhh
Q 008264 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 156 (572)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~ 156 (572)
+-.++++|++-|+.....+.+--+...
T Consensus 124 ---------YkVLmVGR~LGGiaTsLLFSaFEsWli 150 (454)
T KOG4332|consen 124 ---------YKVLMVGRVLGGIATSLLFSAFESWLI 150 (454)
T ss_pred ---------eEEEeehhhhhhHHHHHHHHHHHHHHH
Confidence 444899999999999988888776544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-05 Score=75.96 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHH
Q 008264 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (572)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~ 102 (572)
..++.+.... |.+ +.....+++.+|+|++|...+..+..++..++ ++.|.+.|++ |++.++.+|.+...+|+..++
T Consensus 9 ~~v~~~~Gt~-Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~ 84 (250)
T PF06813_consen 9 IWVQLCSGTT-YTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLW 84 (250)
T ss_pred HHHHHhcCcc-cch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHH
Confidence 3344444322 444 46677889999999999999999999999874 8889999998 999999999999999999888
Q ss_pred HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
.+-.-. ....+.+.+.+..++.|.|......++.....+.||++ ||++.++.-...
T Consensus 85 l~~~~~----------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~--------RG~vvgilk~~~ 140 (250)
T PF06813_consen 85 LAVSGR----------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS--------RGTVVGILKGFF 140 (250)
T ss_pred HHHhCc----------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc--------cCceehhhhHHH
Confidence 765111 11125677777777777777666566556666788862 799999876666
Q ss_pred HHHHHHH
Q 008264 183 SASSIVA 189 (572)
Q Consensus 183 ~~g~~~g 189 (572)
.+++.+=
T Consensus 141 GLSaai~ 147 (250)
T PF06813_consen 141 GLSAAIF 147 (250)
T ss_pred HhHHHHH
Confidence 6655543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-07 Score=94.29 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=114.9
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 008264 361 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 440 (572)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (572)
.+.++....+..+++.|+.+.+ ++| +++++.+.+|..+..++.+..++..
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyL--------adr---yNR~~v~~vG~~iW~~Av~~~~fs~------------------- 119 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYL--------ADR---YNRKRVIAVGIFIWTLAVFASGFSN------------------- 119 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHH--------Hhh---cCcceEEeeHHHHHHHHHHHHHHHH-------------------
Confidence 4456666666666666654443 344 6777899999999999988888765
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCC
Q 008264 441 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN 520 (572)
Q Consensus 441 ~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~ 520 (572)
.+|.+.+.-.+.|+||+...|...+++.+.+|.+.|+.+.+++++...+|..+|......+...+ +
T Consensus 120 ---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------~----- 185 (493)
T KOG1330|consen 120 ---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------F----- 185 (493)
T ss_pred ---HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc------c-----
Confidence 67778888899999999999999999999999999999999999999999888877765554322 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCc
Q 008264 521 INKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 558 (572)
Q Consensus 521 ~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~~~~~ 558 (572)
.|.+-|+..+++.++..++..++.++-.++.+++
T Consensus 186 ----~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 186 ----WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred ----ceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 2455578888888888888877776655433333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=84.11 Aligned_cols=174 Identities=10% Similarity=0.066 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcC---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYN---METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
..+.+.+....-...|+.+-...+.|.+..++ .+....|.+.+.-.+.-.+...+..++-+|+ |.|+.++++..++
T Consensus 221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~ 299 (412)
T PF01306_consen 221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHH
Confidence 34443333333334444444556777775443 3445568888888888999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
++=.+.+++++ +++.+.+.+.+.|+-.+....+..-++++.+|+ |..++.
T Consensus 300 ~iRi~~~~~~~-----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~-------rlsAt~ 349 (412)
T PF01306_consen 300 AIRIIGSGFAT-----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK-------RLSATL 349 (412)
T ss_dssp HHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-------GGHHHH
T ss_pred HHHHHHHhhhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hHHHHH
Confidence 88888888776 788899999999999999999999999999998 445677
Q ss_pred HHH-HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 175 FSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 175 ~~~-~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
+.+ ++....+|..+.+.++|++.++.|++..|++-+...+...++...
T Consensus 350 y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 350 YLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 776 456778999999999999999999999888766655544444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-05 Score=69.05 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=82.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCCh
Q 008264 397 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476 (572)
Q Consensus 397 ~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 476 (572)
.++++.+..+..+..++.+...... +.+......++.+++.....+....++.|..|+
T Consensus 25 ~g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 25 FGRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 3444667777777777665554432 455566677888899888888889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008264 477 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 548 (572)
Q Consensus 477 ~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~ 548 (572)
+.|++++++.++...++..+++.+.+.+.+.. ++...|++.+.+.++..+..+...
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GWRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------chHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999998877654211 234556666666666655554443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.2e-05 Score=81.56 Aligned_cols=169 Identities=15% Similarity=0.059 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
++...+...+....++.+....|.|+++.+|.++.+.++.......+..++..+.+++.++. +++|.+.....+..+|.
T Consensus 220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~ 298 (413)
T PRK15403 220 FLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGL 298 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHH
Confidence 33344445555666666667788899999999999999988778888888777777766554 55555544444444554
Q ss_pred HHHHHhhc-cCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 99 VLLWSTTI-LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+...... .+. +....+++.++.++|.+...|+..+..- .+.+. .++++.++
T Consensus 299 ~l~~~~~~~~~~-------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~------~~G~a~a~ 351 (413)
T PRK15403 299 ALLIVGNLLWPH-------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNL------PKGTVSAS 351 (413)
T ss_pred HHHHHHHHHccc-------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCC------CCcHHHHH
Confidence 44433210 011 3333567888889999998888885332 22222 15778888
Q ss_pred HHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 216 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~ 216 (572)
+......+...++...+++..+ +=+++|.+..++..+.
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 352 LNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 8888778888888888887654 5566776655544433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.9e-05 Score=83.20 Aligned_cols=148 Identities=12% Similarity=0.067 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchh
Q 008264 55 ATNIIFIWTAATNFLPIVG----ALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130 (572)
Q Consensus 55 ~~~i~~~~~~~~~~~~~~~----G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (572)
.+++.+...+...+..++. +++.||+ +.++.+.+|.++.+++.+.++.+.+... + .+..+.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~l~f~~l~~~~~~~~-----------~---~~~vs~ 382 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCSGAFLVLPLGAKFAN-----------D---AGIVSV 382 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhcC-----------C---CCccCH
Confidence 4555666666666666666 5556665 6668889999999999988877652211 0 012245
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee----------ccc
Q 008264 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----------DNL 200 (572)
Q Consensus 131 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----------~~~ 200 (572)
+.++...+++|+|.+...|...+++.+..|+ +.|++.++.+.....+|..++..+.+... ...
T Consensus 383 ~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~-------~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~ 455 (500)
T PRK09584 383 NWLIASYGLQSIGELMISGLGLAMVAQLVPQ-------RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLE 455 (500)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhh
Confidence 6788899999999999999999999999999 56999999888777777777766654221 112
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcC
Q 008264 201 GWKVGFGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 201 ~w~~~f~~~~~~~~~~~~~~~~~~ 224 (572)
++.+.|...++..++..++++...
T Consensus 456 ~~~~~f~~~~~~~~~~a~~~~~~~ 479 (500)
T PRK09584 456 VYGRVFLQIGIATAVIAVLMLLTA 479 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777776665554444443333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0033 Score=65.88 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=109.8
Q ss_pred hHHHHHHHhHh-cCCChhHHH-HHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008264 37 TPNMILYLCRE-YNMETTAAT-NIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (572)
Q Consensus 37 ~~~l~~yl~~~-l~~~~~~~~-~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 114 (572)
-+++..|+.+. .|++..|.. -+.-..+-.+....++...+.|.. |-|++++++.+...+...++-+..
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~--------- 92 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT--------- 92 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence 36889999987 899999875 444455666677888889999986 999999999888777777777665
Q ss_pred cccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh
Q 008264 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (572)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 194 (572)
+...+-+.-+.-|++.+. ..+.++++-...|+ ++-.++.+....+.-+|-.++.+++-
T Consensus 93 --------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~-------~~yq~vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 93 --------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDK-------EHYQKVTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred --------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888877776 46666666666655 33556666666677777777776666
Q ss_pred heec--ccccchhhhHHHHHHHHHHHHHHh
Q 008264 195 YIQD--NLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 195 ~l~~--~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
.+.+ ..+++..+.++.....+++++.++
T Consensus 151 llvs~~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 151 LLVSFGGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 345777777776666666555433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1e-05 Score=82.68 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=108.9
Q ss_pred hhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHH
Q 008264 383 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 462 (572)
Q Consensus 383 ~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~ 462 (572)
+.|+...+.+| ++.+..+.+|+.++..+..++++.. +++.++++-.+.|+|.++.
T Consensus 122 vnp~~G~l~~~---iGy~ipm~~Gl~vmf~sTilFafg~----------------------sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 122 VNPFFGNLIDR---IGYKIPMVAGLFVMFLSTILFAFGN----------------------SYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred hcccchhhHHH---hccccHHHHHHHHHHHHHHHHHHcc----------------------hhHHHHHHHHHhhhhHHHH
Confidence 44444444444 6666889999999999999999876 7778899999999999999
Q ss_pred hhhheeeecccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 008264 463 MIGQTEFYYTELPKSM-SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 541 (572)
Q Consensus 463 ~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~ 541 (572)
.+...+.+.+.+|++. ||.++|+.-.+.++|-.+|+.+.+.+++..| +...|.++++++++..
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G----------------k~aPFlVL~~v~Lld~ 240 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG----------------KSAPFLVLAIVLLLDG 240 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC----------------CcCcHHHHHHHHHHHH
Confidence 9999999999999887 5999999999999999999999988886654 2345899999999988
Q ss_pred HHHHHhhhhccccC
Q 008264 542 LYYLACCKAYGPFK 555 (572)
Q Consensus 542 ~~~~~~~~~~~~~~ 555 (572)
.+-.++.+.++..+
T Consensus 241 ~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 241 ALQLLVIEPTEMDP 254 (464)
T ss_pred HHHHheeCccccCc
Confidence 88777766554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0001 Score=80.32 Aligned_cols=175 Identities=12% Similarity=0.100 Sum_probs=116.1
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChh----HHHHHHHHHHHHHHHHHHHHHHHhhhccCcchh-------hHHHHHHH
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETT----AATNIIFIWTAATNFLPIVGALLADSYVGRYRM-------IGFGCFTC 94 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~----~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~-------~~~~~~~~ 94 (572)
..+....+......++.|.++..+.+.. ..+++.+...+...+..|+.|++.||+ |||+. +.+|.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 4445555565656777787753322110 224455555666777888889999998 99984 77788887
Q ss_pred HHHHHHHHHhhc-cCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 95 LLGMVLLWSTTI-LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 95 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
.++.+..+.... ... .....+.+.++..-+++|+|.+...|...+++.+..|+ +.++.
T Consensus 357 ~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~-------~~~g~ 415 (489)
T PRK10207 357 SLGFLTAAAAGMWFAD--------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ-------HLMGF 415 (489)
T ss_pred HHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH-------HHHHH
Confidence 777655432110 000 00112566677889999999999999999999999998 55899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheec----------ccccchhhhHHHHHHHHHHHHHHh
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQD----------NLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~----------~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
+.++++...++|..+|..++.+... ...+.+.|...++..+++.++++.
T Consensus 416 ~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 416 ILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877754421 112455666655555444444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.5e-05 Score=84.66 Aligned_cols=146 Identities=8% Similarity=-0.153 Sum_probs=112.3
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccC
Q 008264 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (572)
Q Consensus 45 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (572)
++.+|.++.+.|.+.....++..++....+++.+|+ +.|+++.++.++..++.........-.. ..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~-------------~~ 345 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWN-------------LA 345 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccc-------------cc
Confidence 457899999999999999999999999999999997 9999999999888887755431110000 00
Q ss_pred CCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccc---
Q 008264 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--- 201 (572)
Q Consensus 125 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--- 201 (572)
.+..+.......-++.+++.+....+...++.+..|++. +++.++++....++|..+++.+++++.++.|
T Consensus 346 ~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~-------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~ 418 (468)
T TIGR00788 346 FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC-------ESSVFALLASILHLGSSVSGFLGVLLMETIGITC 418 (468)
T ss_pred cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc-------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 000122334555778888888888999999999999844 7999999999999999999999999988776
Q ss_pred --cchhhhHHHH
Q 008264 202 --WKVGFGVPAV 211 (572)
Q Consensus 202 --w~~~f~~~~~ 211 (572)
++..+.+..+
T Consensus 419 ~~~~~~~~~i~i 430 (468)
T TIGR00788 419 DNSNNLWLLILG 430 (468)
T ss_pred ccccchHHHHHH
Confidence 6655554333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00026 Score=73.34 Aligned_cols=156 Identities=16% Similarity=0.211 Sum_probs=127.0
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
..+=+|--+.||++..+.+.++..+..+..++....|++..|..+++++..+++.+..++..+..++.. .
T Consensus 229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~-~--------- 298 (403)
T PF03209_consen 229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP-L--------- 298 (403)
T ss_pred HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-c---------
Confidence 344455556799999999999999999999999999999886669999999999998888877777652 1
Q ss_pred ccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee
Q 008264 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (572)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 197 (572)
.+.+.+..+.++.|+|.|.+.....+..-|..++++ -+...+.+.....+...+|..++|.+.
T Consensus 299 ----------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~-------aG~~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 299 ----------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR-------AGLFMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred ----------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 267889999999999999999999999999988743 689999999888888888888777653
Q ss_pred c----------ccccchhhhHHHHHHHHHHHHH
Q 008264 198 D----------NLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 198 ~----------~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
| ..+|-.+|.+-++.+++++.+.
T Consensus 362 D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 362 DLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2 2368888888877777666554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00021 Score=77.06 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=139.3
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHh-cCCChh------H----HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-YNMETT------A----ATNIIFIWTAATNFLPIVGALLADSYV 81 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~~~~------~----~~~i~~~~~~~~~~~~~~~G~laDr~~ 81 (572)
+..+|.+..+++.+++..++++.+..+.+.|+.++ ++-++. + ..+....+.+...+.+++--++.+|+
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~- 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW- 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 34456777889999999999999988888988763 443221 1 12333445555556667778889997
Q ss_pred Cc-chhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccC--CccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcc
Q 008264 82 GR-YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN--GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 158 (572)
Q Consensus 82 Gr-r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~ 158 (572)
|+ |++...+.++.+++.....+..+.++=. +++.+ +-...+.+..+..++...+.|+..+.....-++++++.
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~ 408 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNS----RYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIR 408 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhcc----ccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence 95 6777888888888777666544211100 00000 00001111246677778899999999999999999999
Q ss_pred cCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccc--cchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 159 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
.++++ ++.|..+++++.+..+..++..+..|.+.+.+| -.+++.+.++..+++.+..+...|+
T Consensus 409 ~~~~~-----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 409 SSNLG-----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred ccccC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 98643 346999999999999999998877776544333 5678888888888888777666554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.5e-05 Score=81.56 Aligned_cols=157 Identities=8% Similarity=0.017 Sum_probs=126.5
Q ss_pred HHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 008264 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (572)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (572)
.++--++ ++++-.+.--|........+-++.-++.+++..|+ |+-+++..+++.+++=.+..+..+
T Consensus 392 tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~------------ 457 (618)
T KOG3762|consen 392 TFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ------------ 457 (618)
T ss_pred HHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc------------
Confidence 3444444 45565555556555556667778889999999998 999999999999888887777766
Q ss_pred ccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHH-HHHHHHHHhhhhhhe
Q 008264 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF-VSASSIVAVTCIVYI 196 (572)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l 196 (572)
|+|+.+-.-+++|+..+.++.++.+|+++..|+ +.|.++.++.... -.+|-.+|.+++|.+
T Consensus 458 -----------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp-------~l~at~Q~l~~g~f~GlG~g~GslIGG~~ 519 (618)
T KOG3762|consen 458 -----------NPWMVLPIEILQGITHALIWAAIISYASHVAPP-------GLRATAQGLLQGIFHGLGKGLGSLIGGFV 519 (618)
T ss_pred -----------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC-------cchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence 788888889999999999999999999999999 5588888875554 488999999999999
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 197 QDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 197 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
.+.+|-|..|.+.++.+++.++.+....++
T Consensus 520 v~~fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 520 VERFGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred heeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999888888777766554443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.6e-05 Score=58.69 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=55.2
Q ss_pred HHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 008264 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (572)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 94 (572)
.++.--+.-.+.++++.|+++ .|+++.+.|.+.++..+...+++++.|+++||+ ||+|.++....++
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 333444445566889999874 899999999999999999999999999999998 9999888765443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0058 Score=64.05 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHH
Q 008264 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYF 135 (572)
Q Consensus 56 ~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (572)
+.+..+-.+-..+.-++..++.+|+ --+.=+....++..+|.++.+++. +.+.-++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~-----------------------~v~~~l~ 117 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP-----------------------SVWVRLL 117 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc-----------------------chhHHHH
Confidence 3455566667777778888888887 433333445567778888887755 5666778
Q ss_pred HHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec-ccccchhhhHHHHHHH
Q 008264 136 AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVIML 214 (572)
Q Consensus 136 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~w~~~f~~~~~~~~ 214 (572)
+.++.++++|.....-.++.. .+++ ...+-+..+...++++|+..-..+.+ ..+.|..+++...+.+
T Consensus 118 Gv~las~ssg~GE~tfL~lt~-~y~~-----------~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~ 185 (402)
T PF02487_consen 118 GVVLASLSSGLGEVTFLSLTH-FYGK-----------SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPA 185 (402)
T ss_pred HHHHHhhhhhhhHHHHHHHHH-hcCc-----------cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 899999999998888888755 4554 12344444555566666644333333 2344666766655544
Q ss_pred HHHHHHH
Q 008264 215 LSALSFF 221 (572)
Q Consensus 215 ~~~~~~~ 221 (572)
+-++.++
T Consensus 186 ~~~~~~f 192 (402)
T PF02487_consen 186 IFLLSYF 192 (402)
T ss_pred HHHHHHH
Confidence 3333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=74.92 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcchhhHHH-HH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMIGFG-CF 92 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~~~-~~ 92 (572)
+.++.+..+.+.-++++-.=..++++|++ ++|.+.+..+.+-.+.-+...+.+|+.|..+||. +||||-++.. ..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 44555555666666665555678888875 7899999988888888999999999999999975 5998866654 55
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
..+++.++..++..+... .||| .+.....-....++++.-+.=++.-......-++.+|....+++ ++|
T Consensus 111 ~i~~~l~Lig~aaDig~~---lgd~---~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~----~~~- 179 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLL---LGDN---ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK----KTR- 179 (498)
T ss_pred HHHHHHhhhhhHhhhhHH---hcCC---cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh----hhc-
Confidence 667777777776544321 1121 11111122344556666666677778888899999999887663 223
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhe
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYI 196 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l 196 (572)
+.+++.....+|..+|+.++++.
T Consensus 180 -Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 180 -ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred -cchhHHHHHHhcceeeeeccccc
Confidence 89999999999999999888754
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.054 Score=57.72 Aligned_cols=184 Identities=10% Similarity=-0.030 Sum_probs=95.5
Q ss_pred HHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHh
Q 008264 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (572)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~ 104 (572)
..++.++.-=++-...+.|+.+-+.-+---.+..-..-.+...+..+.-|...||. -|.+++..+++..-++..+.+..
T Consensus 10 sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~~s~~~ 88 (432)
T PF06963_consen 10 SHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVAASCAL 88 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHHHHHHH
Confidence 33333443333344566677666544444444555556677778888889999998 99999998887766655443322
Q ss_pred hccCCCCCCCcccccCCccCC-CcchhHHHHHHHHHH-HHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHH
Q 008264 105 TILPGAKPPACDQLRNGCESA-TWSQLMPLYFAFGLM-SLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (572)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~-g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (572)
- ..-+.. + .... +......+++...+. .+..=.......+.=-|+...-.. +.++.+.+.++...=.=
T Consensus 89 ~-~~l~~~------~--~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~-~~~~~La~~NA~mRRID 158 (432)
T PF06963_consen 89 F-LLLLSY------P--SSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAG-GDPGALARMNATMRRID 158 (432)
T ss_pred H-HHHHhC------C--ccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcC-CChhhHHHHHHHHHHHH
Confidence 1 000000 0 0000 001111122222222 122111122222222344322110 11144666666655555
Q ss_pred HHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHH
Q 008264 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 183 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 219 (572)
-+.-++||++.|.+.+..+.+....+.+..-+++...
T Consensus 159 L~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 159 LFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 6688899999999988788877666665555555443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=78.46 Aligned_cols=161 Identities=16% Similarity=0.087 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCcchhhHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADS----YVGRYRMIGFGCFTC 94 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr----~~Grr~~~~~~~~~~ 94 (572)
++...+..++.....|++..++|.|+++..|.|..+++.+...+.++..++.++.|+++|| . .+|..+.....++
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCLY 353 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence 4456778889999999999999999999777999999999999999999999999999999 5 6666666655544
Q ss_pred HH-HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 95 LL-GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 95 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
.+ |...+...+ .......+......+.+...++......+....+. +|-+
T Consensus 354 ~~~g~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~------k~~~ 404 (495)
T KOG2533|consen 354 AIIGAISLLAAA-----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT------KALT 404 (495)
T ss_pred HHHHHHHHHhhc-----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH------HhHH
Confidence 43 323333222 12223333333444555555666666666664432 3555
Q ss_pred hHHHHHHHHHH-HHHHHhhhhhheecccccchhhhHH
Q 008264 174 YFSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVP 209 (572)
Q Consensus 174 ~~~~~~~~~~~-g~~~g~~~~~~l~~~~~w~~~f~~~ 209 (572)
..+.+..+.+. |.+.+++..+.....++|.+.|...
T Consensus 405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 405 TVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 55555555544 4444444455556667888888543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00076 Score=74.10 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=109.9
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
+..+|.....+....+.+++.+-...+....+.+..|.+... .+...+..+...++..++.++.||+ |||+.++.|..
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 334566666677777777777555555555556666776543 4455556777778888889999998 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchh
Q 008264 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (572)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (572)
.+.++.++++.......... ..........+...-+.......+..|....+.+|.+|. +.|+
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~-------~~r~ 430 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYP----------NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL-------RLRS 430 (513)
T ss_pred HHHHHHHHHHHHHHHhccCC----------CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH-------hHHh
Confidence 99999988877642221000 000011111122222222222233345555788999999 5578
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHH-HHHhcCCc
Q 008264 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL-SFFLASPF 226 (572)
Q Consensus 173 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~-~~~~~~~~ 226 (572)
++.++-.....+...+--.......+..++...|.+.+....+... ..+...|+
T Consensus 431 ~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pE 485 (513)
T KOG0254|consen 431 KGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPE 485 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEccc
Confidence 8777644333332222121222222222234455555444444444 44444443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00028 Score=79.33 Aligned_cols=135 Identities=11% Similarity=-0.019 Sum_probs=88.4
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------
Q 008264 361 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI----------- 429 (572)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~----------- 429 (572)
.+.+.+...+...+..++.+. +.+| .++++.+.+|.++++++.++.+..+-.......
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~----~~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSY----FGTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHH----hhcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 344555555555555544333 3444 344478999999999998887765411000000
Q ss_pred --hcCCCC--------------Cccccc--cchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHH
Q 008264 430 --NEGISD--------------DLRAVV--QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLS 491 (572)
Q Consensus 430 --~~~~~~--------------~~~~~~--~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 491 (572)
+...+. ++.... ...+..+++.-++.|+|++...+....++.|.+|++.|+.+.|+.+....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000000 000000 11244566778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 008264 492 AANLVASLIMNAVDD 506 (572)
Q Consensus 492 ig~~lg~~~~~~i~~ 506 (572)
+|..+|+.+.+.+.+
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999988877654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00068 Score=74.59 Aligned_cols=161 Identities=10% Similarity=-0.006 Sum_probs=115.0
Q ss_pred cccccccCCCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008264 3 TEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETT---AATNIIFIWTAATNFLPIVGALLADS 79 (572)
Q Consensus 3 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~---~~~~i~~~~~~~~~~~~~~~G~laDr 79 (572)
++|+...+..|. +|.....+++.+++...+|.+..+.|.....-++.++. ..+++...+.++...+..+.|.+.-+
T Consensus 297 ~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ 375 (599)
T PF06609_consen 297 KDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK 375 (599)
T ss_pred CCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH
Confidence 467777655543 46666667788888888888888888877777777663 56788888888888888999999987
Q ss_pred ccCcchhh-HHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcc
Q 008264 80 YVGRYRMI-GFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 158 (572)
Q Consensus 80 ~~Grr~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~ 158 (572)
+ +|-|.. +++..++.++...++... ..+....+...++.|+|.|...........-.
T Consensus 376 i-r~~Kw~li~~~~~~ta~~Gama~~~---------------------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~ 433 (599)
T PF06609_consen 376 I-RHIKWQLIFGSVLMTAFCGAMAAVR---------------------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLI 433 (599)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHcc---------------------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEee
Confidence 6 886665 456666665555444332 11334456667788898888776666666655
Q ss_pred cCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhh
Q 008264 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193 (572)
Q Consensus 159 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 193 (572)
.|+ +..+.+.++....-.+|+.+|..+.
T Consensus 434 ~p~-------~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 434 VPD-------EDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred eCc-------hHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 566 3489999988888888888887754
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.66 E-value=6e-07 Score=96.67 Aligned_cols=184 Identities=13% Similarity=0.164 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
+.....+.+..+..+..+....+...++.+..+.+.. -.......+...++.+++.++.||+ |||++++.+.++.++
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence 3444444455555455444444455555566677776 2233344566667778888999998 999999999888887
Q ss_pred HHHHHH-HhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhcc-ccchhhhhhhhcccCCCCCcccccchhhh
Q 008264 97 GMVLLW-STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSG-GIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (572)
Q Consensus 97 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (572)
..+.++ .....+. +. ...+.. .++...+...+.+ +..+....+.+|.+|. +.|+++
T Consensus 329 ~~~~~~~~~~~~~~-----------~~---~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt-------~~R~~~ 386 (451)
T PF00083_consen 329 CSLILGIIFFLGVS-----------SS---SWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPT-------KVRSTG 386 (451)
T ss_pred cccccccccccccc-----------cc---cccccc-cceeeeeccccccccccccccccccccccc-------cccccc
Confidence 776664 1110000 00 000111 1122222222222 3446666888999999 558999
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 175 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
.++.+....++..+++.+..++.+..+-...|.+.+.+.++..+..+...|
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp 437 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP 437 (451)
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence 999888889999999988888877666344555555555555555444444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00081 Score=69.30 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=110.3
Q ss_pred hHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 008264 37 TPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (572)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 116 (572)
..+++.|+.+..|++..+++...+.+..+.+++..++.++-.|+ -..|.+.+......+-.+..+++.
T Consensus 256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~----------- 323 (422)
T COG0738 256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG----------- 323 (422)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 36889999888999999999999999999999999999999997 888888877654444444444433
Q ss_pred cccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhe
Q 008264 117 QLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196 (572)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 196 (572)
+ ..-+.+.++.|+..+.++|+..++..+..|++.+ .+ |..-....+|+.+-|.+.|++
T Consensus 324 ------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts------~~---s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 324 ------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS------VG---SGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred ------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc------cc---ceeeeeheecchHHHHHHHHH
Confidence 2 2234567889999999999999999999996553 22 222234567888889999999
Q ss_pred ecccccchhhh-HHHHHHHHH
Q 008264 197 QDNLGWKVGFG-VPAVIMLLS 216 (572)
Q Consensus 197 ~~~~~w~~~f~-~~~~~~~~~ 216 (572)
.++.|-...+. ++.++.+..
T Consensus 382 ~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 382 ADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 99988777766 444444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0031 Score=67.17 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=75.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCCh
Q 008264 397 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476 (572)
Q Consensus 397 ~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 476 (572)
.+.++.+.++.+...+..++.++.. +...+.+.-+++|++|+... +.+.++++-+|+
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~ 145 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP 145 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH
Confidence 4555888888888888888777765 67778888899999999999 999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008264 477 SMSSIASTLSGAGLSAANLVASLIMNAV 504 (572)
Q Consensus 477 ~~rg~~~g~~~~~~~ig~~lg~~~~~~i 504 (572)
++|++++|+.+....+|.++++.+.+.+
T Consensus 146 kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 146 SRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998873
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=71.30 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=84.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCCh
Q 008264 397 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476 (572)
Q Consensus 397 ~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 476 (572)
.++++.+.+|.++..++.++.++... .....+.+.+.+..++.|+|++...+.....+.+.+|
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~~----------------~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp- 150 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTFQ----------------EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP- 150 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhc----------------ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-
Confidence 55668899999999999887776520 0012366777778889999999888888888888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008264 477 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 549 (572)
Q Consensus 477 ~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~ 549 (572)
+.||.++|+......+|.++.+.+...+.. .++...|++++++.++..++.+.+.+
T Consensus 151 ~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 151 SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 579999999999999999875555444331 11345566677666666555555443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0024 Score=69.26 Aligned_cols=113 Identities=9% Similarity=0.051 Sum_probs=74.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChh
Q 008264 398 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 477 (572)
Q Consensus 398 ~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 477 (572)
++++.+.+|.++.+++.+.++... .+...+.....+..+|.++..+...+++.+.+|++
T Consensus 74 Grrr~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~ 132 (493)
T PRK15462 74 GNRMAVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT 132 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCC
Confidence 444778889888888865544221 01122333444555666776677777888888875
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 008264 478 --MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC 547 (572)
Q Consensus 478 --~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~ 547 (572)
.|+++.++.....++|..+++.+.+.+.+.. +++..|.+.++..+++++.++..
T Consensus 133 ~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l~li~~~~~ 188 (493)
T PRK15462 133 DPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIAGLVIFLCG 188 (493)
T ss_pred CccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999987764322 24666776665555555554433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.34 Score=52.29 Aligned_cols=164 Identities=8% Similarity=-0.005 Sum_probs=99.6
Q ss_pred CcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCC-----ChhHHHHHHHHHHHHHHHH-HHHHHHHhhhccCcchhhH
Q 008264 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNM-----ETTAATNIIFIWTAATNFL-PIVGALLADSYVGRYRMIG 88 (572)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~-----~~~~~~~i~~~~~~~~~~~-~~~~G~laDr~~Grr~~~~ 88 (572)
.+|.++...++.++--+.|+... -+++.+.. ..+...++.+...+.+.+. .++-+++++|+ +|++++.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~ 78 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence 35566666666666666655333 34666655 3356677777666665555 78889999998 9999998
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcccc-cCCccC-----CCcc--------hhHHHHHHHHHHHHhccccch-hhhh
Q 008264 89 FGCFTCLLGMVLLWSTTILPGAKPPACDQL-RNGCES-----ATWS--------QLMPLYFAFGLMSLGSGGIRS-SSLA 153 (572)
Q Consensus 89 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~--------~~~~l~~~~~l~g~g~g~~~~-~~~~ 153 (572)
+....+..-..+.++.- .| ..|.+ ++...+ .+.. +.|...+.-+...+=.-...+ .-.+
T Consensus 79 ~~~~~F~~~f~lF~~vl-~p-----~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~ 152 (472)
T TIGR00769 79 TVISPFLGFFALFAFVI-YP-----LSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWG 152 (472)
T ss_pred HHHHHHHHHHHHHHHHH-hc-----chhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766666665542 11 11211 110000 0000 011111222223332222333 6778
Q ss_pred hhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhee
Q 008264 154 FGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (572)
Q Consensus 154 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 197 (572)
+++|.++.++ -.|.+++++.+.|+|..+|+.+..++.
T Consensus 153 fandi~t~~q-------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 153 FANQITTIDE-------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHhcCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999855 578999999999999999998877765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00034 Score=73.00 Aligned_cols=179 Identities=18% Similarity=0.100 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHH--------HHHHH-HHHHHHHHHHHHHHhhhccCcchhh
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATN--------IIFIW-TAATNFLPIVGALLADSYVGRYRMI 87 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~--------i~~~~-~~~~~~~~~~~G~laDr~~Grr~~~ 87 (572)
+.++-.....+...+++|+.--+...-++ .+|..+.+... ...+. .+++..+..++.++.|++ |||+.-
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 44555667888888899988766665554 34444433222 11112 222233556667789997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccc
Q 008264 88 GFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKS 167 (572)
Q Consensus 88 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 167 (572)
+.+.+++.+-.+.++...+-. + -..+-.....+..++.-+|=+ ...-.+-+|.||.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~~--------------~-~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FPa------ 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQL--------------E-NTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPA------ 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCcccc--------------c-ccCceeehHHHHHHHHhcCCC---ceeEEeehhhchH------
Confidence 999999998888887644210 0 001111122222333333333 3333445689998
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhhhheec-----ccccchhhhHHHHHHHHHHHHHHh
Q 008264 168 KGALQSYFSWYYVFVSASSIVAVTCIVYIQD-----NLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 168 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
+.|++..++...+.=+|+++|.....++.+ ..+.+++|++.+.+.+++.+..++
T Consensus 438 -rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 438 -RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred -HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 779999999999999999999999999988 779999999988887777665443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0046 Score=49.72 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=60.5
Q ss_pred cchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhh
Q 008264 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT 105 (572)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~ 105 (572)
.+++ +.+.++++.++|.++++++.+...+++.++.+...++.++. .+++.+..++++.++..+.+++.+
T Consensus 10 ayTp-lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 10 AYTP-LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHh-HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 44567889999999999999999999999999999999997 889999999999999998888765
|
Note that many members are hypothetical proteins. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.19 Score=51.81 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=99.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-----hccCcchh
Q 008264 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLAD-----SYVGRYRM 86 (572)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD-----r~~Grr~~ 86 (572)
.|+.++.+.++++..+.-.+. +|....+|..++ .-|.|-++.+....+ ..=...-++...+.| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~a--y~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFA--YWPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhh--hhHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 455567777777777776665 556565555555 557787776544322 222334466677777 87 99998
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcc
Q 008264 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (572)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 166 (572)
-++= .-+.+|.+...++...+ +--|++.... +...+....++.-+.++.+=.++....-.+..+++
T Consensus 101 Wvvp-~q~llG~~mllLs~~v~--------~~~g~ng~~p--~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--- 166 (510)
T KOG3574|consen 101 WVVP-CQYLLGLFMLLLSYLVD--------RGLGGNGGLP--NVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--- 166 (510)
T ss_pred eeee-hHHHHHHHHHHHhhCCC--------cccccCCCCc--chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh---
Confidence 7653 24455666665555222 1112222221 22334445667778888888888888888887744
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhhhhhe
Q 008264 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYI 196 (572)
Q Consensus 167 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 196 (572)
.+-+.....++.+.|..+|..+.-.+
T Consensus 167 ----lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 167 ----LGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred ----cCchhHHHHHHHhhhHHhhcceeeEe
Confidence 66677777778888888887664433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.029 Score=51.00 Aligned_cols=107 Identities=9% Similarity=0.121 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHH
Q 008264 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYF 135 (572)
Q Consensus 56 ~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (572)
..-.++......+.+++++.+.+++ |.|+.+.+|.+.+.+-...... . +.+.++.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-~-----------------------~~~~l~~ 94 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-P-----------------------NSYTLYP 94 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-h-----------------------hHHHHHH
Confidence 3344556677788888889999997 9999999998777653332221 1 5677899
Q ss_pred HHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh
Q 008264 136 AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (572)
Q Consensus 136 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 194 (572)
+-++.|+|.+..+.+...++.+..++ +.|++-.+++....+.+.+.|.++.-
T Consensus 95 ~s~l~G~~~a~lW~aqg~ylt~~s~~-------~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 95 ASALLGFGAALLWTAQGTYLTSYSTE-------ETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHhhhhHHhhHhhhHHHHHcCCH-------HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987666 34777778777777777777765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0074 Score=64.96 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=113.2
Q ss_pred cchHHHH-HHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHH-HHhhhccCcchhhHHHHHH
Q 008264 16 LRTLPFI-IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA-LLADSYVGRYRMIGFGCFT 93 (572)
Q Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G-~laDr~~Grr~~~~~~~~~ 93 (572)
.|..+.+ +...+......-+-.-.+..|+...+++++.+.+.+.+..+....++.++.. .+.-+ +|-|+++..|++.
T Consensus 239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~ 317 (463)
T KOG2816|consen 239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLS 317 (463)
T ss_pred CccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHH
Confidence 3444433 3333333333333332446788889999999999999999999999888887 55655 4999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 94 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
..+.....++++ +.++.+....+.++. +...|...++++.+.+.++ +++
T Consensus 318 ~~~~~~~~af~~-----------------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e-------~g~ 366 (463)
T KOG2816|consen 318 EFLQLLLFAFAT-----------------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE-------QGK 366 (463)
T ss_pred HHHHHHHHHHhc-----------------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc-------ccc
Confidence 999999999987 556666666655554 4567999999999888844 899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhe
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYI 196 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l 196 (572)
.+++.+....+...++|.+-+.+
T Consensus 367 v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 367 VFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hhhHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999886655
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.02 Score=63.98 Aligned_cols=101 Identities=11% Similarity=0.014 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC---------CCCCCCC
Q 008264 447 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKR---------GGNGGWI 517 (572)
Q Consensus 447 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~---------~~~~~~~ 517 (572)
.++++.++.|+|+.-.++...+|+.|.+.++..+.+.|+..++..+|=++|-.+.+......-. ...+.|+
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 4667788999999999999999999999999999999999999999988888877766533210 1123343
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008264 518 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 553 (572)
Q Consensus 518 ~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~ 553 (572)
|.|+.-|++.+.+.++..+.++++.++..+
T Consensus 319 ------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 319 ------GAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 345555888888888888877777665543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.035 Score=61.00 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=92.2
Q ss_pred HHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHH
Q 008264 374 IWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLV 453 (572)
Q Consensus 374 ~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 453 (572)
++..+...+..++.++++|| +.+..++++..++-+..++.. +++.+.+.-+
T Consensus 129 ~G~~vG~~i~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a~----------------------~~~~~~~~Rf 179 (521)
T KOG0255|consen 129 LGVLVGSLIFGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFAP----------------------NYWMFLIFRF 179 (521)
T ss_pred HHHHHHHhhheehHhhcccH-------HHHHHHHHHHHHHHHHHHHhC----------------------cHHHHHHHHH
Confidence 33444444456666775444 677777777777665555543 7788888889
Q ss_pred HHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHH
Q 008264 454 LSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLL 533 (572)
Q Consensus 454 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 533 (572)
+.|++..........+..|..+++.|+.++.+ ....+.++.+++.....+.. +|.+.+++.
T Consensus 180 l~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------------~Wr~~~~~~ 240 (521)
T KOG0255|consen 180 LSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------------DWRWLFWII 240 (521)
T ss_pred HHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHH
Confidence 99999999999999999999999999999999 77778888888877666541 346677777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 008264 534 TALSMANFLYYLACCKA 550 (572)
Q Consensus 534 ~~~~lv~~~~~~~~~~~ 550 (572)
.....+.+++ +++.+|
T Consensus 241 ~~~~~~~~~~-~~l~~E 256 (521)
T KOG0255|consen 241 SIPSGLFLLL-WFLPPE 256 (521)
T ss_pred HHHHHHHHHH-HHccCc
Confidence 7666666555 444433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.033 Score=59.72 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=97.2
Q ss_pred cccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 008264 362 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 441 (572)
Q Consensus 362 ~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (572)
++......+...+..|.++.+. .|. .+-++-+..|.+++.+|-++...++.. +
T Consensus 74 G~viaa~slg~~i~~liF~~Ws--------~k~--~~~k~Pli~s~ii~~~g~llY~~l~~~-----------------~ 126 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWS--------NKT--GSVKKPLIVSFLIAIIGNLLYLALAYV-----------------P 126 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccc--------ccc--CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence 3444445556666666555442 221 222456899999999998877555411 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 008264 442 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 521 (572)
Q Consensus 442 ~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~ 521 (572)
.-..+++..+.++.|+|.+-. ...=.|+.+..-.+.|.++++..+....+|..+||.+.+.+..+..++ ..|+++ .
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~~-~ 202 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILPG-L 202 (488)
T ss_pred cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcCc-c
Confidence 115677788889999986532 334455555444555777777777777888888888766654333221 123331 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008264 522 NKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 554 (572)
Q Consensus 522 ~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~ 554 (572)
+-..|...-|+.+.+.++.++...+..+|..+.
T Consensus 203 ~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 203 IFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred eEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 112234445667788888888877777765443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.052 Score=55.87 Aligned_cols=131 Identities=10% Similarity=0.088 Sum_probs=102.7
Q ss_pred HHHHHH-hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 008264 39 NMILYL-CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG-RYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (572)
Q Consensus 39 ~l~~yl-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-rr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 116 (572)
+...++ .+.+|.++.|.|-+.+...+.+.+.+..-....||..| -+.....++.++.-..++.+.+.
T Consensus 282 ~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~----------- 350 (451)
T KOG2615|consen 282 NTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR----------- 350 (451)
T ss_pred hhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc-----------
Confidence 333444 46799999999999888888888888888888888722 45566666666666666665444
Q ss_pred cccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhe
Q 008264 117 QLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196 (572)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 196 (572)
....++.+..+-.+..+...++...++....|. ++||+..++......++=.+||+++|.+
T Consensus 351 ------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~-------~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 351 ------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ-------SQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred ------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc-------ccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 345688889999999999999999999999888 4489999999999999999999999887
Q ss_pred ecc
Q 008264 197 QDN 199 (572)
Q Consensus 197 ~~~ 199 (572)
..+
T Consensus 412 ~~W 414 (451)
T KOG2615|consen 412 FSW 414 (451)
T ss_pred EEE
Confidence 653
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.68 Score=52.30 Aligned_cols=314 Identities=8% Similarity=-0.098 Sum_probs=188.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcc
Q 008264 49 NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128 (572)
Q Consensus 49 ~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (572)
+...........++.....+..+.....+|...|+-..+..-+....++.+...+.. ++.. ....
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a~--------------~~~~ 80 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGAI--------------PSSG 80 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hccC--------------cccc
Confidence 334445666778888889999999999999997777777777777777776666544 1110 0111
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccc-cch---
Q 008264 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKV--- 204 (572)
Q Consensus 129 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~--- 204 (572)
......+..+.+.++.++..++.+++.++.....++ +++.+..+.+++..+.+.+ |.+++..+..... +..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~----~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg 155 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE----RQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFG 155 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc----cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc
Confidence 123345677778899999999999999999887654 6777899999998888877 5556666655432 321
Q ss_pred ----hhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCCCcccchhcccCCCccccCCCchhh
Q 008264 205 ----GFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLR 280 (572)
Q Consensus 205 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (572)
-++..++.+++.++.++.....++..++.......+.++........+
T Consensus 156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~---------------------------- 207 (654)
T TIGR00926 156 CQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR---------------------------- 207 (654)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH----------------------------
Confidence 233555666666666666655444333332211112222211111000
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc----cCCCCCC
Q 008264 281 FLNKACMAKHPEQDLTPDGRASNPNSLC--TVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQAS----SMDRHVT 354 (572)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~----~~~~~l~ 354 (572)
... ... ..+....|.+. .+...++.+...+.+.++...+.+++.+.+. -.+.. .+++..
T Consensus 208 --~~~---~~~------~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~---~Q~~s~~~~qa~~m~- 272 (654)
T TIGR00926 208 --KRF---STR------SEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALF---DQQGSRWTLQATRMD- 272 (654)
T ss_pred --Hhh---ccC------CcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHhc-
Confidence 000 000 00000112111 1122345677777778777667667666421 11111 122222
Q ss_pred CCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008264 355 PNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 428 (572)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~ 428 (572)
+.+...+.....++.+..++.+++...+..++..++.++ ..+.+.+.-+.+.+.++.+.+..+.......-
T Consensus 273 ~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 273 GDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred CccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 133333445677788888888888877777888987555 56777888888888888888888775555555
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.27 Score=53.96 Aligned_cols=168 Identities=11% Similarity=0.027 Sum_probs=94.2
Q ss_pred HHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHH--HH-HHHHHHHH
Q 008264 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT--CL-LGMVLLWS 103 (572)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~--~~-~g~~~~~~ 103 (572)
++..++..+.-....-.+..-+|-+..+.+.+++.+.++..++..++++++++- -|+ ....-+.+ .. +...++..
T Consensus 24 f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~-~~~~e~~i~l~~~~~~~ll~~ 101 (521)
T PRK03612 24 FVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAG-FVAVELLLALLGGLSALILYA 101 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333444333334455555667899999999999999999999999999887543 222 22211111 11 11111111
Q ss_pred hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHH
Q 008264 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (572)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (572)
..... ......++...++.++..|+..|....+..+...+ .-++..+..|....
T Consensus 102 ~~~~~------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~--------~~g~~~g~ly~~nt 155 (521)
T PRK03612 102 AFAFQ------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ--------HLGHNVATVLAADY 155 (521)
T ss_pred HHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------chhhhhhhhHhHHh
Confidence 11000 00112233445567778888888877766543221 13556777888889
Q ss_pred HHHHHHhhhhhhee-ccccc-chhhhHHHHHHHHHHHHHHh
Q 008264 184 ASSIVAVTCIVYIQ-DNLGW-KVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 184 ~g~~~g~~~~~~l~-~~~~w-~~~f~~~~~~~~~~~~~~~~ 222 (572)
+|+++|.++.+++. ..+|- +..+++..+..+++++..+.
T Consensus 156 lGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 156 LGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877653 45664 34444444444444444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.0023 Score=70.35 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=2.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----c--------CCC
Q 008264 445 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT----K--------RGG 512 (572)
Q Consensus 445 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~----~--------~~~ 512 (572)
.+.++++.++.|+|..-..+...+|+.|.++++..+.+.|+......+|-++|-.+.+...... . ...
T Consensus 141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~ 220 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPS 220 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCC
Confidence 3456778899999999999999999999999999999999999999998888877766554321 1 112
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 008264 513 NGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 551 (572)
Q Consensus 513 ~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~ 551 (572)
.+.|+ |.|+.-|.+.+.+.++..+....+.++.
T Consensus 221 dp~Wv------GAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 221 DPRWV------GAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ---------------------------------------
T ss_pred CccHH------HHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 33444 3344446667777776666665555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.25 Score=48.68 Aligned_cols=93 Identities=9% Similarity=0.059 Sum_probs=66.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCCh
Q 008264 397 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476 (572)
Q Consensus 397 ~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 476 (572)
.++...+.+|.+...+|......... ......+.|.+.....+.+.+..+...+...-..+.+|+
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~---------------~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~ 127 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVS---------------GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR 127 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh---------------CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence 66777889999999998876654430 111234666676666677777777666666666688886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008264 477 SMSSIASTLSGAGLSAANLVASLIMNAVD 505 (572)
Q Consensus 477 ~~rg~~~g~~~~~~~ig~~lg~~~~~~i~ 505 (572)
.||++.|+.-....+++++-..+...+.
T Consensus 128 -~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 128 -SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred -ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 6999999999988888888777665544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.43 Score=51.04 Aligned_cols=172 Identities=14% Similarity=0.085 Sum_probs=107.0
Q ss_pred HHHHhhcchHHHHHHHhHhcCCC----hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc-------hhhHHHHHHHHHH
Q 008264 29 ERMATVGFTPNMILYLCREYNME----TTAATNIIFIWTAATNFLPIVGALLADSYVGRY-------RMIGFGCFTCLLG 97 (572)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l~~~----~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr-------~~~~~~~~~~~~g 97 (572)
....+--....+..|..+.-+.+ +-...+..+...+.-.+..|+..++--+. +|+ .-+.++++++..+
T Consensus 296 FW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~ 374 (498)
T COG3104 296 FWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLG 374 (498)
T ss_pred HHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHH
Confidence 33333333355666655432211 11223455566677777777888887774 554 2355667777777
Q ss_pred HHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH
Q 008264 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (572)
.+++..+... . .| ..+..+.+.++..-+++++|.=+..|...+++....|+ .-.+..+++
T Consensus 375 fl~l~~~~~~-~---------~~---~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~-------~~~s~~ma~ 434 (498)
T COG3104 375 FLILLLAGIW-F---------GG---PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP-------ALKSFIMAM 434 (498)
T ss_pred HHHHHHHHHh-h---------cC---CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH-------HHHHHHHHH
Confidence 7666554100 0 00 02344788899999999999999999999999999998 446778888
Q ss_pred HHHHHHHHHHHHhhhhhh------eecccccchhhhHHHHHHHHHHHHHH
Q 008264 178 YYVFVSASSIVAVTCIVY------IQDNLGWKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 178 ~~~~~~~g~~~g~~~~~~------l~~~~~w~~~f~~~~~~~~~~~~~~~ 221 (572)
+......|..++..+.+. ..+.......|+..+...++..+...
T Consensus 435 wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 435 WFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred HHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 888888888877766662 12223455566666555444444433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.15 Score=53.72 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=90.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcch-hhHHHHHHHHHH-HHHHHHhhccCCCCCCCcccccCCccCC
Q 008264 48 YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYR-MIGFGCFTCLLG-MVLLWSTTILPGAKPPACDQLRNGCESA 125 (572)
Q Consensus 48 l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (572)
-|.+...+|.+......++.++..+.|.++||. ...| ++........++ +.+..++. .
T Consensus 296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~~~~l~~~t~-~------------------ 355 (480)
T KOG2563|consen 296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVGTLMLLTCTL-F------------------ 355 (480)
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhc-c------------------
Confidence 355667889999999999999999999999998 5544 444444444444 22233222 1
Q ss_pred CcchhHHHHHHHHHHHHhccccchhhhhhhhccc-CCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccc---
Q 008264 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQL-DKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--- 201 (572)
Q Consensus 126 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--- 201 (572)
......++.--.+.|...-+..|...-+..|.. |+.| +...++.....++-+++=..+-+...+.++
T Consensus 356 -~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E--------~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~ 426 (480)
T KOG2563|consen 356 -LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE--------GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPG 426 (480)
T ss_pred -CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC--------cccceeEEeehhHHHHHHHHHHHHHhhccCCCC
Confidence 113344556666777777778888888877765 5544 334455445555544444445555555554
Q ss_pred -cchhhhHHHHHHHHHHHHHHhcCCceec
Q 008264 202 -WKVGFGVPAVIMLLSALSFFLASPFYVK 229 (572)
Q Consensus 202 -w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 229 (572)
|...-+......++.+++..+.++.+++
T Consensus 427 ~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 427 NTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 3333333344455555555566655543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=94.73 E-value=7.5 Score=41.94 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008264 448 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLI 500 (572)
Q Consensus 448 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~ 500 (572)
++...++..+..-..+.+..++-.+.+.+..-|++|.+.|+..++|+---..+
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~ 460 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTF 460 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHH
Confidence 45567888888888889999999999999999999999999999998655544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.18 Score=52.88 Aligned_cols=125 Identities=7% Similarity=-0.019 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChh---
Q 008264 401 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS--- 477 (572)
Q Consensus 401 ~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--- 477 (572)
+.+.+|.++..+|.+++..... .... ....+...+..++.+.++|.+..-|....+..++++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~-------~~~~------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAI-------PPSL------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHT-------SSSC------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHh-------cchh------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 4577888888888877554430 0000 01234456778888999999999999999999998776
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008264 478 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 554 (572)
Q Consensus 478 ~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~ 554 (572)
.|..+...+....++|..++..+.+.+.+. .+++..|.+.++.++++.+.++...++++.+
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 455566667777778888877665554311 2356678888888888777766665555544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.84 E-value=2.5 Score=45.19 Aligned_cols=140 Identities=11% Similarity=-0.002 Sum_probs=103.3
Q ss_pred cchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008264 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (572)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 114 (572)
++-..+..|+... |+++...|..-+...+....+..+..++-+|+ |..|+=++++........++..+-..+.-.
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~--- 350 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSP--- 350 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCC---
Confidence 4456788888877 99999999999999999999999999999998 999999999887776655554443222200
Q ss_pred cccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh
Q 008264 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (572)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 194 (572)
. ...+...++.+.++.=+|.=++=-+..-++.|..|+ ++|+...+......++.-.+...+.-
T Consensus 351 --------~--~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~-------~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 351 --------F--SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE-------SERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred --------c--hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH-------HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 112344444444444456666667788888888888 45999999999999998888876644
Q ss_pred he
Q 008264 195 YI 196 (572)
Q Consensus 195 ~l 196 (572)
.+
T Consensus 414 i~ 415 (432)
T PF06963_consen 414 IF 415 (432)
T ss_pred cc
Confidence 33
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.83 Score=49.02 Aligned_cols=115 Identities=21% Similarity=0.178 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeeccc---CChh
Q 008264 401 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE---LPKS 477 (572)
Q Consensus 401 ~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~---~P~~ 477 (572)
.-+.+|.++..++...++.... ...+.......+++..+|.++.....-....|. -|.+
T Consensus 60 ~Y~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 60 PYMIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 4467777766655555554330 012333444555667778887777776666654 4666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008264 478 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 550 (572)
Q Consensus 478 ~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~ 550 (572)
+|..++.......+|+.++..+.+...+.. ++...|.+.+.+.++..+..+.+.+|
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 889999999999999999988876654222 12333555666666666555666665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.24 Score=52.25 Aligned_cols=163 Identities=13% Similarity=-0.046 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHhhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCC
Q 008264 319 LIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 397 (572)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~ 397 (572)
+.+...+.....+.|..-.+ .+- +.+..+..... ....+...++..++.+|+.+..+|+--.|++||+
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tP-yl~~lGvphk~-------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR--- 102 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTP-YLQSLGVPHKW-------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR--- 102 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccH-HHHHcCCCccc-------ccccccccccccceeccccccccccccccccccc---
Confidence 33444444444555555444 333 44555555554 4456666777788888888888887777877663
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc-cccchhhHHHHHHHHHHHHHHHHhhhheeeecccCCh
Q 008264 398 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA-VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476 (572)
Q Consensus 398 ~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 476 (572)
.-+.++....+++++.+++...... .+.+|.++ .-.-+....++.+.+.=++.-....+.-++..+..-.
T Consensus 103 ---PfI~~~s~~i~~~l~Lig~aaDig~------~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~ 173 (498)
T KOG0637|consen 103 ---PFILAGSLLIAVSLFLIGYAADIGL------LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG 173 (498)
T ss_pred ---chHHHhhHHHHHHHhhhhhHhhhhH------HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC
Confidence 5678888888888887776653322 23333332 1222334445555566666666666667777777655
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHH
Q 008264 477 SMSSI-ASTLSGAGLSAANLVASLIM 501 (572)
Q Consensus 477 ~~rg~-~~g~~~~~~~ig~~lg~~~~ 501 (572)
+.+-+ +++.+.++..+||.+|-.+.
T Consensus 174 d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 174 DAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred hhhhhccchhHHHHHHhcceeeeecc
Confidence 55666 99999999999998886653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.18 E-value=2.4 Score=38.52 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=67.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCCh
Q 008264 397 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 476 (572)
Q Consensus 397 ~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 476 (572)
.++++.+.+|.+...+-..... . ...+.+.+.-++.|++.++.+.+.-.+..+...+
T Consensus 64 lg~K~sm~lg~~~y~~y~~~~~--~---------------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 64 LGPKWSMILGSLGYAIYIASFF--Y---------------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH--h---------------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 4555778888777765433222 1 2456677788899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008264 477 SMSSIASTLSGAGLSAANLVASLIMNAVD 505 (572)
Q Consensus 477 ~~rg~~~g~~~~~~~ig~~lg~~~~~~i~ 505 (572)
+.+++..+++....+.+..+|..+.-.+.
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887755543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.11 E-value=3.8 Score=44.04 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHH---hhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccC--CccCCCcchhHHHHHHHHH
Q 008264 65 ATNFLPIVGALL---ADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN--GCESATWSQLMPLYFAFGL 139 (572)
Q Consensus 65 ~~~~~~~~~G~l---aDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l 139 (572)
+..++....+.+ .+++ ||++++..+..+..++.++.-.+. |...+ ++. +.+.....+.....+.-++
T Consensus 291 g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~~--p~dap-----~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 291 GEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLSF--PNDAP-----LRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhccc--cccCC-----CCCCcccccccccchhHHHHHHHH
Confidence 333444444444 4666 999999999988888877765433 22110 000 0111111134445566788
Q ss_pred HHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhh
Q 008264 140 MSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (572)
Q Consensus 140 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 194 (572)
.|++-+......+.++++.+|++ |..+++++-.-..++..++-...+
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~~~~--------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLYPDD--------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999552 677777766666666655443333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=89.63 E-value=31 Score=36.60 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008264 444 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 505 (572)
Q Consensus 444 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~ 505 (572)
+..++-..-++.|++.+. -.+-++++++.+|++.--++.+......-+|.+++..+...+.
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666777777664 5567789999999999889998888888888888888877665
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.73 E-value=40 Score=35.57 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008264 444 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLI 500 (572)
Q Consensus 444 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~ 500 (572)
+-+|.+....++|+..+-.......++.+.+|++++..+..+....-..|-+.|..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 556677777889999999888899999999999999988888888777777777665
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.09 E-value=20 Score=37.07 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCC
Q 008264 444 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 523 (572)
Q Consensus 444 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~ 523 (572)
.+|+.-..++++.....+..+.....+.+....+.-|...|++++..-+ +=+.+.-++.+..+-+ ++-...-
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g~~-----L~ir~Q~ 396 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDDRGLG-----LDIRTQF 396 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcccccC-----CCcceeE
Confidence 5777777888888877777777766666666677777777776544332 2222222222211100 0000000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008264 524 GHYDYYYWLLTALSMANFLYYLACCKA 550 (572)
Q Consensus 524 ~~~~~~f~~~~~~~lv~~~~~~~~~~~ 550 (572)
--+..+|.+++++.++.....+..+++
T Consensus 397 ~~Y~~Yf~v~~~i~~~~~~~~~~~~~~ 423 (433)
T KOG3810|consen 397 VVYSSYFIVLGVIFLIGFGIEYLMCRR 423 (433)
T ss_pred EEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 124556888999999887776555543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.37 E-value=18 Score=36.01 Aligned_cols=139 Identities=10% Similarity=0.083 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcch---hhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHH
Q 008264 56 TNIIFIWTAATNFLPIVGALLADSYVGRYR---MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMP 132 (572)
Q Consensus 56 ~~i~~~~~~~~~~~~~~~G~laDr~~Grr~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (572)
|.+.+.+.++..+++-+..++..|- |.+ .+.+..++......+...+.+. +.+..++..
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~Lpilt~~v----------------sP~kes~~~ 346 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALLLPILTSSV----------------SPSKESPSE 346 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHHHHHHHhcc----------------CCCcCCchH
Confidence 6777777777777777776666653 333 2333332222222221111111 011235555
Q ss_pred HHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHH
Q 008264 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 212 (572)
Q Consensus 133 l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~ 212 (572)
-.++.++.-.+.|.++|...-+=....|+ +.|++.++++.+-.|+-.-++-...-.=..-.+-|..|.++.+.
T Consensus 347 s~i~F~~~E~cvGlfwPSimkmRsqyIPE-------earstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~ 419 (454)
T KOG4332|consen 347 SLIGFCLFEACVGLFWPSIMKMRSQYIPE-------EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF 419 (454)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHhhCCH-------HHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence 67888899999999999999999999999 44899999998888876664331100000113567788888777
Q ss_pred HHHHHHH
Q 008264 213 MLLSALS 219 (572)
Q Consensus 213 ~~~~~~~ 219 (572)
..++.+.
T Consensus 420 ~~~a~i~ 426 (454)
T KOG4332|consen 420 LFVASIL 426 (454)
T ss_pred HHHHHHH
Confidence 6665443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.78 E-value=82 Score=34.11 Aligned_cols=166 Identities=10% Similarity=0.003 Sum_probs=98.2
Q ss_pred CCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCC---hhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCcchhhHH
Q 008264 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNME---TTAATNIIFIWTA-ATNFLPIVGALLADSYVGRYRMIGF 89 (572)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~---~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~ 89 (572)
..++..+.+.++.++-.+.+. +.--+++.+.++ +.....+-...-+ .+.+..++-+++.+++ -|.+++..
T Consensus 24 ~E~~kflpl~Ll~f~I~~ny~-----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~ 97 (509)
T COG3202 24 YELKKFLPLALLFFCILFNYN-----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYI 97 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHH
Confidence 344556666666555555433 222345555444 4555666666666 6778888889999997 99999988
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccc-cC---------Ccc-CCCcc----hhHHHHHHHHHHHH-hccccchhhhh
Q 008264 90 GCFTCLLGMVLLWSTTILPGAKPPACDQL-RN---------GCE-SATWS----QLMPLYFAFGLMSL-GSGGIRSSSLA 153 (572)
Q Consensus 90 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---------~~~-~~~~~----~~~~l~~~~~l~g~-g~g~~~~~~~~ 153 (572)
-+..+....+++++.- . |.||-+ ++ +++ ...+. +.|..-+.-+..-+ |.-...-.-..
T Consensus 98 ~~~~F~~fF~LFa~Vi-~-----P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~ 171 (509)
T COG3202 98 ILGFFLGFFALFAFVI-Y-----PYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQ 171 (509)
T ss_pred HHHHHHHHHHHHHHHH-h-----ccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777777654 2 334433 32 222 10000 11211111111111 11111113345
Q ss_pred hhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec
Q 008264 154 FGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (572)
Q Consensus 154 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 198 (572)
...|.+..++ -.|.+++++.+.|++..++..+..++.+
T Consensus 172 faNeitt~~e-------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 172 FANEITTIEE-------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHhhhHHH-------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677777744 5789999999999999999988888765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 572 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 3e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 572 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 6e-93 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 1e-14 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 6e-93
Identities = 85/546 (15%), Positives = 186/546 (34%), Gaps = 62/546 (11%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY------NMETTAATNIIFIWTAATNFLP 70
R +P+IIA+EA ER + G + +L + A ++ + F P
Sbjct: 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71
Query: 71 IVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130
++G +AD + G+Y I + +G L + +
Sbjct: 72 LLGGWIADRFFGKYNTILWLSLIYCVGHAFL----------------------AIFEHSV 109
Query: 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190
Y L++LGSGGI+ +F +Q D+ + + ++ A F +Y ++ S A
Sbjct: 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSFFAS 165
Query: 191 TCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKN 250
+ + N G V FG+P V+M ++ + F+L Y+ G V+ ++
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225
Query: 251 RRTKLPTQ----ATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+ A + + + L A + +
Sbjct: 226 KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK 285
Query: 307 LCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFN 365
V+ ++++++++ +++ Q +S +LQA+ M +
Sbjct: 286 SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFEPAMMQ 341
Query: 366 IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARR 425
L + + I + + P ++ K + +MG G+ + S ++
Sbjct: 342 ALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMM- 397
Query: 426 SIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 485
+S WQ+ L EF Y++ PK+M +
Sbjct: 398 ------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF 445
Query: 486 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 545
++ NL L +V T + + ++ + +++ ++ + +
Sbjct: 446 WTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFA 500
Query: 546 ACCKAY 551
++Y
Sbjct: 501 LYARSY 506
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 33/218 (15%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYN-----METTAATNIIFIWTAATNFLPI 71
L + E +ER + G ++ Y+ + + A +I+ I+ +
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 72 VGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLM 131
+G +AD +G + +G +LG ++L A
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVL-----------------------ALPFGAS 109
Query: 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191
L+ + L+ +G+G ++ + D+ D + G FS + ++ + +A
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG-----FSIFVFGINLGAFIAPL 164
Query: 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK 229
+ Q+ G+ V F + A+ M + L ++ +
Sbjct: 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.89 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.35 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.25 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.14 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.65 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.12 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.4e-31 Score=282.44 Aligned_cols=445 Identities=16% Similarity=0.198 Sum_probs=294.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCcc
Q 008264 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADS-YVGRY 84 (572)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr-~~Grr 84 (572)
..+.++|..+.+.+..+++++++|++...++.|++++ +|++..+.+++.+.+.++..++.+++|+++|| + |||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r 85 (491)
T 4aps_A 7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR 85 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence 3455678888888999999999999999999999998 99999999999999999999999999999999 8 999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCC
Q 008264 85 RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG 164 (572)
Q Consensus 85 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 164 (572)
+++..+.++..++.+++++++ +.+.++++|+++|+|.+...++..++++|++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~- 141 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT-
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc-
Confidence 999999999999999988765 66779999999999999999999999999999855
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccC---CCCC-CchhH
Q 008264 165 TKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK---ANTS-LLPGL 240 (572)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ 240 (572)
+.|+.++++++...++|..++|.+++++.+..|||++|++.++..+++++.++...+++.+++ ++.+ +..+.
T Consensus 142 ----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4aps_A 142 ----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEV 217 (491)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHH
T ss_pred ----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchh
Confidence 347889999999999999999999999998899999999987777766665544433322211 1111 11111
Q ss_pred HHH---------------HHHHHhhcccCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCC
Q 008264 241 TQV---------------LVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305 (572)
Q Consensus 241 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (572)
.+. +.... ....+.. +........ .......+... ...+
T Consensus 218 ~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~------~~~~~~~~~~~--~~~~--------------- 271 (491)
T 4aps_A 218 KPLLVKVSLAVAGFIAIIVVMNL-VGWNSLP--AYINLLTIV------AIAIPVFYFAW--MISS--------------- 271 (491)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHH-HSSCCTT--HHHHHHHHH------HHHHHHHHHHH--HC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccCcccc--cchhhhhHH------HHHHHHHHHHH--Hhhc---------------
Confidence 110 00000 0000000 000000000 00000000000 0000
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-hhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhh
Q 008264 306 SLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-S-SFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAV 383 (572)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 383 (572)
. .....++++......++.....++..+.+ . .+..+.....+... ...+.....+.+..++..++.+++
T Consensus 272 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l- 342 (491)
T 4aps_A 272 --V-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWL- 342 (491)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHH-
T ss_pred --c-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHHHHHH-
Confidence 0 00011222222334444445555555555 2 22222222223221 335667777777777777765554
Q ss_pred hhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 008264 384 LPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNM 463 (572)
Q Consensus 384 ~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~ 463 (572)
.+|+++|+ ....+.+.+|..+.+++++.+...... .+ .....+.+++++.+++.+++++...
T Consensus 343 ---~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~l~g~~~~~~~ 404 (491)
T 4aps_A 343 ---WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-------YG------TSGKVSPLWLVGSWALVILGEMLIS 404 (491)
T ss_dssp ---HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-------CC------CCTTCCTHHHHHHHHHHHHHHHTTT
T ss_pred ---HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-------cC------CCCCccHHHHHHHHHHHHHHHHHHh
Confidence 45655553 455677788888888887776654311 00 0112466777888899999999999
Q ss_pred hhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 008264 464 IGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY 543 (572)
Q Consensus 464 ~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~ 543 (572)
+..+.++.+.+|++.||+++|+.++...+|+.+++.+.+.+.+. ++...|+++++++++..++
T Consensus 405 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 405 PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987665421 2345677788888888777
Q ss_pred HHHhhhhcccc
Q 008264 544 YLACCKAYGPF 554 (572)
Q Consensus 544 ~~~~~~~~~~~ 554 (572)
.+...++.+++
T Consensus 468 ~~~~~~~~~~~ 478 (491)
T 4aps_A 468 LVFLSKRIQGL 478 (491)
T ss_dssp HHHC-------
T ss_pred HHHHHHHHHHH
Confidence 77776665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=285.72 Aligned_cols=470 Identities=19% Similarity=0.298 Sum_probs=285.4
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchh
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN------METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~ 86 (572)
+.++|.++.+.+..++.++++|++...++.|+++++| +++.+++++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4456677778889999999999999999999999999 9999999999999999999999999999995599999
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcc
Q 008264 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (572)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 166 (572)
+..+.++..++.++++++. .+.+.++++|++.|++.+...|+..++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-- 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT--
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch--
Confidence 9999999999998887643 1467788999999999999999999999999998552
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHH
Q 008264 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246 (572)
Q Consensus 167 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (572)
.++...+++++...++|..++|.+++++.+..||+++|++.++..+++++.++...++.+++++++++..+..+.+..
T Consensus 144 --~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 144 --SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 112445666999999999999999999988889999999988877766666555544433322222221121112212
Q ss_pred HHhhcccCCCCcccchh----------cccCCCccccC--------------CCchhhh--hhhhhcccCCCCCCCCCCC
Q 008264 247 SFKNRRTKLPTQATEEM----------YHHGKGSMRLM--------------PSENLRF--LNKACMAKHPEQDLTPDGR 300 (572)
Q Consensus 247 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~~ 300 (572)
..+++..+.+ ..... ......+ ... ......| .+.....
T Consensus 222 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 286 (524)
T 2xut_A 222 ALLTKVEGKG--NIGLVLALIGGVSAAYALVNIP-TLGIVAGLCCAMVLVMGFVGAGASLQLERARKS------------ 286 (524)
T ss_dssp -----CTTHH--HHHHHHHHHHHHHHHHTGGGTT-TTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCS------------
T ss_pred HHhhhhcccC--ccchhhhhhhhhhhhhhhcccc-hhhhhhhhhhhhhhhhcccccchhhHHhhhhcc------------
Confidence 2221110000 00000 0000000 000 0000000 0000000
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHH
Q 008264 301 ASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLY 379 (572)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 379 (572)
.+....++.++.......+.....++..+.+ .+....+...++... + .+.+.+...+.+..++..++.
T Consensus 287 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 355 (524)
T 2xut_A 287 -------HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFN 355 (524)
T ss_dssp -------CCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGT
T ss_pred -------ccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHH
Confidence 0000112233444444555445555666666 443333333333221 1 134555566666666666666
Q ss_pred hhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHH
Q 008264 380 DRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAM 459 (572)
Q Consensus 380 ~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~ 459 (572)
+++..+..+|.+++ .+..+++.+|+++.+++++.++..... . +.....+.+++++.+++.++++
T Consensus 356 ~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~l~g~~~ 419 (524)
T 2xut_A 356 NFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM----------M---DGGSALSIFWQILPYALLTFGE 419 (524)
T ss_dssp TTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT----------T---TTTCCCCSHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH----------h---cCCCCcCHHHHHHHHHHHHHHH
Confidence 66555555554333 556677888888888877665543200 0 0001236677788889999999
Q ss_pred HHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC-CCCCcchhHHHHHHHHHHH
Q 008264 460 AFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSM 538 (572)
Q Consensus 460 ~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~l 538 (572)
+...+..++++.+.+|++.||+++|+.++..++|+.+++.+.+.+.+..+ .+|..+ +. +.....|++.+++++
T Consensus 420 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~ 493 (524)
T 2xut_A 420 VLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAI 493 (524)
T ss_dssp HHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887764221 122210 00 001223777788888
Q ss_pred HHHHHHHHhhhhccccCC
Q 008264 539 ANFLYYLACCKAYGPFKG 556 (572)
Q Consensus 539 v~~~~~~~~~~~~~~~~~ 556 (572)
++.++++++.+++++++.
T Consensus 494 ~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 494 LAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHhccchh
Confidence 888777777666655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=238.67 Aligned_cols=398 Identities=10% Similarity=-0.005 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHH
Q 008264 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (572)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g 97 (572)
.+..+.+..++..+..+.+.+.++. +.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHH
Confidence 3444555666666666666555554 45677 9999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHH----hhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 98 MVLLWS----TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 98 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
.+++++ +. +.+.++++|+++|++.+...++..++++|.+|+ ++|++
T Consensus 106 ~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~ 155 (451)
T 1pw4_A 106 MLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGG 155 (451)
T ss_dssp HHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHH
T ss_pred HHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhhhH
Confidence 999988 66 567799999999999999999999999999998 45999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcc
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (572)
++++.+...++|..++|.+++++.+..| ||++|++.++..++..+..+...++.++.....++
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 219 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI---------------- 219 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh----------------
Confidence 9999999999999999999998888888 99999998877666555544443332111100000
Q ss_pred cCCCCcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008264 253 TKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMI 332 (572)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (572)
.+... + ..++ ..++ + .....++........+.+.+...... ..+.
T Consensus 220 ~~~~~-~------~~~~-----~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 264 (451)
T 1pw4_A 220 EEYKN-D------YPDD-----YNEK-----------A---------EQELTAKQIFMQYVLPNKLLWYIAIA---NVFV 264 (451)
T ss_dssp TTTCC-C--------------------------------------------CCTHHHHHHTSSCHHHHHHHHH---HHHH
T ss_pred hhhcc-c------cccc-----chhh-----------h---------hcccccccchHHHHHcCHHHHHHHHH---HHHH
Confidence 00000 0 0000 0000 0 00000000000000001122111111 1111
Q ss_pred HHhhccchhhhhhhccCCCCCCCCceecc---cccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHH
Q 008264 333 AVTISQSSFLVLQASSMDRHVTPNFEIPS---GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLF 409 (572)
Q Consensus 333 ~~~~~q~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~ 409 (572)
...+.. ...+....+....+ .+. +.......+..+++..+ ...+.+|+.+ ++++.+.++..+
T Consensus 265 ~~~~~~--~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~~~~-----~~~~~~~~~~~~ 329 (451)
T 1pw4_A 265 YLLRYG--ILDWSPTYLKEVKH----FALDKSSWAYFLYEYAGIPGTLL----CGWMSDKVFR-----GNRGATGVFFMT 329 (451)
T ss_dssp HHHHHH--HHHHHHHHBTTBSC----CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTST-----TCHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc-----CCchhHHHHHHH
Confidence 111111 00111111222121 112 22333333333333333 3333455300 233555555555
Q ss_pred HH-HHHHHHHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHHHH
Q 008264 410 ST-ASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA 488 (572)
Q Consensus 410 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 488 (572)
.. ++++...... ..+.+.+....++.+++.....+....++.+..|++.||+++|+.++
T Consensus 330 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 330 LVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 44 4443332211 12445566666778888888888888899999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008264 489 GLSA-ANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 550 (572)
Q Consensus 489 ~~~i-g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~ 550 (572)
...+ |+.+++.+.+.+.+.. ++...|++.+++.+++.+..+...++
T Consensus 390 ~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 390 FGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 9999999988776432 24667788888888877776665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-24 Score=225.67 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=147.5
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHH
Q 008264 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (572)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 92 (572)
+.+++.+..+.+..++..+......+. .+++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 334455555566666676666655444 4457889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHH---HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCccccc
Q 008264 93 TCLLGMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (572)
Q Consensus 93 ~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (572)
+.+++.+++ +++. +++.++++|+++|+|.+...++..++++|.+|+ +
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~ 149 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------S 149 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------T
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------h
Confidence 999999988 5544 788899999999999999999999999999998 4
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhee-cccc-------------------------cchhhhHHHHHHHHHHHHHH
Q 008264 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG-------------------------WKVGFGVPAVIMLLSALSFF 221 (572)
Q Consensus 170 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~~-------------------------w~~~f~~~~~~~~~~~~~~~ 221 (572)
+|+++.++++...++|..++|.+++++. +..+ ||+.|++.+...++..+.++
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999887 5544 99999877665554444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=239.54 Aligned_cols=410 Identities=12% Similarity=0.027 Sum_probs=224.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhH
Q 008264 52 TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLM 131 (572)
Q Consensus 52 ~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (572)
..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++++++........+ .......-..+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----DNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----SSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhHHHHHHhhhHH
Confidence 45678899999999999999999999998 99999999999999999999864311000000 0000001123788
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheec--------ccccc
Q 008264 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD--------NLGWK 203 (572)
Q Consensus 132 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--------~~~w~ 203 (572)
.++++|+++|+|.|+..+..+++++|..|+ ++|++..++.+....+|..+++.++..+.. ..+||
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 899999999999999999999999999998 569999999999999999999887665432 23577
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCceec---cCCCCCCchhHHHHHHHHHhhcccCCCCcccchhcccCCCccccCCCchhh
Q 008264 204 VGFGVPAVIMLLSALSFFLASPFYVK---SKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLR 280 (572)
Q Consensus 204 ~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (572)
+.+.+..+..++.++.. ...|+-++ .+.+.++ ..+.+.....+.. ..++. .+..+
T Consensus 201 ~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~---a~~~l~~~~~~~~------~~~~~------------~~~~~ 258 (491)
T 4gc0_A 201 YMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQ---AEGILRKIMGNTL------ATQAV------------QEIKH 258 (491)
T ss_dssp HHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHH---HHHHHHHHHHHHH------HHHHH------------HHHHH
T ss_pred HHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhH---HHHhHHHhcCCch------hHHHH------------HHHHH
Confidence 77766555444333322 22222111 1111111 1111100000000 00000 00000
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH--HHHhhccchhhhhhhccCCCCCCCCce
Q 008264 281 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIM--IAVTISQSSFLVLQASSMDRHVTPNFE 358 (572)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~~~~~~~~~l~~~~~ 358 (572)
..+..+.... .......++.........+... ......+.+. .......+.
T Consensus 259 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------- 311 (491)
T 4gc0_A 259 SLDHGRKTGG-------------------RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPE-VFKTLGAST------- 311 (491)
T ss_dssp HHHHHHHHTT-------------------HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSSCCH-------
T ss_pred HHHhhhhhhh-------------------HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchH-HHHhcCCCc-------
Confidence 0000000000 0000001111111111110000 0000000111 111111000
Q ss_pred ecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 008264 359 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 438 (572)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (572)
...........+..++... +...+.+|+++| +.+..+...+.++++..+.....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~----~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~--------------- 365 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTV----LAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT--------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred cchhhHHHHHHHHHHHHHH----HHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc---------------
Confidence 0011111122222222222 233445665444 67777877777777666544310
Q ss_pred ccccchhhHHHHHHHHHHHH-HHHHhhhheeeecccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 008264 439 AVVQMSAMWQLPYLVLSGLA-MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 517 (572)
Q Consensus 439 ~~~~~s~~~l~~~~~l~g~g-~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~~~ 517 (572)
....+..+....+...+ .....|..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+.+... .
T Consensus 366 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~-------~ 435 (491)
T 4gc0_A 366 ---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW-------L 435 (491)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH-------H
T ss_pred ---ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 01111222222222222 222345566788899999999999999999999999999988887653211 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCcCccc
Q 008264 518 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAF 562 (572)
Q Consensus 518 ~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~~~ 562 (572)
.. .......|++++++++++.++.+++.||+|+|++||-++.
T Consensus 436 ~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 436 VA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred Hh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 00 0012345788899999999999999999999999985443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=208.42 Aligned_cols=166 Identities=15% Similarity=0.176 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHH
Q 008264 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (572)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~ 100 (572)
.+....++..++.....+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 3455566666666666666665 4678999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHH
Q 008264 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (572)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (572)
+++++ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++++++++.
T Consensus 82 ~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 131 (375)
T 2gfp_A 82 AVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------TQLRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCCSHHHHHHH
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------HHHHHHHHHHHH
Confidence 98877 788899999999999999999999999999998 348999999999
Q ss_pred HHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHH
Q 008264 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (572)
Q Consensus 181 ~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 218 (572)
..++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999987766554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=207.38 Aligned_cols=169 Identities=9% Similarity=-0.015 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|..+.+....++...++....++++.|+++++|+++.+++++.+.+.++..++++++|+++||+ ||||++..+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4444455555566666666678999999999999999999999999999999999999999998 999999998877655
Q ss_pred HHHHH---HHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 97 GMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 97 g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
+.... .++... ...++.++++.+++.|...+...+...+..++.. ++|+.
T Consensus 86 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNF 138 (417)
T ss_dssp CHHHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHTC
T ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhccc
Confidence 32111 121100 0012344555555555444444444444443311 23566
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHH
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIML 214 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~ 214 (572)
.++..+...++|..++|.+++++.+ .+|++.|++.++..+
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL 178 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 6777777789999999999998876 589999987765533
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-12 Score=134.28 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=147.1
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CcchhhHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV--GRYRMIGFGCFTC 94 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Grr~~~~~~~~~~ 94 (572)
|.++...+..++....++++..+++.|+++.+|.++.+++++.+...++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 445566667777888888888999999998899999999999999999999999999999999 5 8888888777665
Q ss_pred H-HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 95 L-LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 95 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
. ++.+++.+.. ..+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 5 5554443321 11456677788889999999999999999999998 45999
Q ss_pred hHHHHHHHHHH-HHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHh
Q 008264 174 YFSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (572)
Q Consensus 174 ~~~~~~~~~~~-g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 222 (572)
++++++...++ |..++|.+.+++.+..||+.+|++.+++.+++.+..+.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999899999999888777766665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-11 Score=126.52 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=136.6
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHH-HhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILY-LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 95 (572)
|..+...+..++.....+++..+++.| +++.+|.++.+++.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 344555556666777777788899999 8888899999999999999999999999999999998 99999999998888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
++.++..+.. +... ++..++.|++.+...|...++..|.+|+ + ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8877776643 3333 3445888999999999999999998886 2 56666
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccc-cchhhhHHHHHHHHHHHH
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALS 219 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~ 219 (572)
++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 6555 567999999999999999888 999999876655544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=127.62 Aligned_cols=165 Identities=8% Similarity=0.038 Sum_probs=124.9
Q ss_pred HHHhhcchHHHHHHHhHhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhc
Q 008264 30 RMATVGFTPNMILYLCREYNM---ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (572)
Q Consensus 30 ~~~~~~~~~~l~~yl~~~l~~---~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~ 106 (572)
...++.+...++.|+++.++. +..+.+.+.+...++..++.+++|+++||+ |||+++..+.++..++.++.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~- 310 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 334444445678888766653 244556777777788888999999999998 999999988888777765554332
Q ss_pred cCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHH-HHHHHHHH
Q 008264 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSAS 185 (572)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g 185 (572)
+.+.+++..++.+++.+...+...+++.|.+|+ +.|+++.++ ++...++|
T Consensus 311 ----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 311 ----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp ----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhHH
Confidence 455566677777887777777788999999998 558998888 47778899
Q ss_pred HHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 186 ~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
..++|.++|++.+..|++..|.+.++..+++.+..+...+
T Consensus 362 ~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999988888999998887777766665544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-10 Score=121.21 Aligned_cols=185 Identities=10% Similarity=0.002 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhH-----HHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-----FGCFT 93 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~~ 93 (572)
...+.+..++....++.....++.|.++.++.+..+.+++.....++..++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44455556666677777788899999998888877788888889999999999999999998 9987665 67777
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhh
Q 008264 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (572)
Q Consensus 94 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (572)
..++.+++........ .....+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------AFNSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------TCSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHHH
Confidence 7777666554321100 00112456677788899999999999999999999999 44899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 174 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
+.++++...++|..+++.+.+++.+ .++.+.|.+.+...+++.+..+...++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 467778888777766666665555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-08 Score=105.78 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~ 98 (572)
.........+..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 33334444444444444444555666778888888888888888899999999999999998 99999999988888887
Q ss_pred HHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHH
Q 008264 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (572)
+.++....... ........+.....+.+. +..|....+.+|.+|. +.|+++.++.
T Consensus 357 ~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt-------~~R~~~~g~~ 411 (491)
T 4gc0_A 357 FSLGTAFYTQA-----------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN-------AIRGKALAIA 411 (491)
T ss_dssp HHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT-------TTHHHHHHHH
T ss_pred HHHHHHHhccc-----------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH-------hHHHHHHHHH
Confidence 77665431111 001111222222223333 3346778899999999 5599999999
Q ss_pred HHHHHHHHHHHhhhhhheec------ccccchhhhHHHHHHHHHHHHHHhcCCc
Q 008264 179 YVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 179 ~~~~~~g~~~g~~~~~~l~~------~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
+....+|..+++.+.+.+.+ ..++...|++.+++.+++.+..++..||
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999998888776643 2456677888777777777766666554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-09 Score=108.13 Aligned_cols=160 Identities=8% Similarity=-0.039 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHH-HHHH
Q 008264 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT-CLLG 97 (572)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~g 97 (572)
.+...+..++....++++..+++.|+++.+|.++.+++.+.....++..++.++.|+++||+ || + +..+... ...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~~~~ 277 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCLLAG 277 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHHHHH
Confidence 44455566677777777778888898888999999999999999999999999999999998 87 2 2333322 2222
Q ss_pred HH--HHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhH
Q 008264 98 MV--LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (572)
Q Consensus 98 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (572)
.. ...... ..+.+.+++..++.|++.+...+...+++.|.+| ++ |+++.
T Consensus 278 ~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~-------~g~~~ 328 (375)
T 2gfp_A 278 LLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL-------AGTAG 328 (375)
T ss_dssp SSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH-------HHHHH
T ss_pred HHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc-------cchHH
Confidence 22 111110 0145556778889999999999999999999987 32 89999
Q ss_pred HHHHHHHHHHHHHHhhhhhheecccccchhhhHHH
Q 008264 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 210 (572)
Q Consensus 176 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 210 (572)
++.+...++|..++|.+.+.+.+..+|+..+.+.+
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999887778887776643
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=94.53 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhccCcc----hhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCC
Q 008264 55 ATNIIFIWTAATNFLPIVGALLA----DSYVGRY----RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESAT 126 (572)
Q Consensus 55 ~~~i~~~~~~~~~~~~~~~G~la----Dr~~Grr----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (572)
.+.+.....++..+..++.+++. ||. ||| +.+..+.++..++.+++++...... ...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~ 401 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD--------------GGS 401 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT--------------TTC
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCC
Confidence 44454444455555555555553 444 432 4566677777666665544220000 001
Q ss_pred cchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhheeccc--cc--
Q 008264 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--GW-- 202 (572)
Q Consensus 127 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--~w-- 202 (572)
..+.+.+++..++.|++.+...+...+++.|..|+ +.|+++.++++...++|..++|.+.+++.+.. +|
T Consensus 402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~ 474 (524)
T 2xut_A 402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK-------AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIV 474 (524)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT-------TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 12556677788999999999999999999999998 44899999999999999999999999887632 23
Q ss_pred -------chhhhHHHHHHHHHHHHHHhcCCc
Q 008264 203 -------KVGFGVPAVIMLLSALSFFLASPF 226 (572)
Q Consensus 203 -------~~~f~~~~~~~~~~~~~~~~~~~~ 226 (572)
+..|++.+.+.+++.+..+...++
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 475 QTGMSVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333666666666555555444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.18 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.16 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=9.7e-26 Score=236.10 Aligned_cols=161 Identities=11% Similarity=0.014 Sum_probs=136.4
Q ss_pred hHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 008264 37 TPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (572)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 116 (572)
...+.++++ ++|+|.+|.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.++++++.....
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------- 114 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------- 114 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS-------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh-------
Confidence 345566776 5899999999999999999999999999999998 9999999999999999988877542222
Q ss_pred cccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHHHHHHHHHHHHhhhhhhe
Q 008264 117 QLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196 (572)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 196 (572)
+...+++.|++.|++.|...++..++++|.+|+ ++|++++++++.+.++|..++|.+++.+
T Consensus 115 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 115 ------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp ------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hcccccccccccccchhhhhhhhhhhhH
Confidence 567799999999999999999999999999998 5599999999999999999999888876
Q ss_pred ecc-cccchhhhHHHHHHHHHHHHHHhcCC
Q 008264 197 QDN-LGWKVGFGVPAVIMLLSALSFFLASP 225 (572)
Q Consensus 197 ~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~ 225 (572)
... .+||+.|++.+...++..+..+...+
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 554 48999999887776655555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.6e-23 Score=212.94 Aligned_cols=400 Identities=10% Similarity=-0.016 Sum_probs=235.5
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|..+.+.+..++..++.....++++.|+++++|+|+++.|++.+++.++..++.++.|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5566677777777788777788999999999999999999999999999999999999999998 999999999988888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
+..+.....+.+. .....++.+.+.+.+.+...........+..++++ +++....+
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 141 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNFEFG 141 (417)
T ss_dssp THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH-----HHHSCCHH
T ss_pred HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh-----hhhHHHHH
Confidence 8877776541111 12223444555555555544444444444333322 23555667
Q ss_pred HHHHHHHHHHHHHhhhhhheecccccchhhhHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcccCCC
Q 008264 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (572)
Q Consensus 177 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (572)
........+..+++.+++.+.+. +|+..+........+..+..+...++.++.+.+.++ ++.. .
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~- 205 (417)
T d1pv7a_ 142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA-------------VGAN-H- 205 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-------------HHSC-C-
T ss_pred HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhh-------------hhhh-c-
Confidence 77778888999999998888764 555555555544444444444433322211111000 0000 0
Q ss_pred CcccchhcccCCCccccCCCchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008264 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI 336 (572)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (572)
. ........+. ...+...................
T Consensus 206 ----------~-------~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 239 (417)
T d1pv7a_ 206 ----------S-------AFSLKLALEL-----------------------------FRQPKLWFLSLYVIGVSCTYDVF 239 (417)
T ss_dssp ----------C-------CCCHHHHHHH-----------------------------TTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------c-------cccccccccc-----------------------------cccccccchhhhhHHHHHHHHhh
Confidence 0 0000000000 00000001111111111111111
Q ss_pred ccchhhhhhhccCCCCCCCCceecccccchhhHHHHHHHHHHHhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHH
Q 008264 337 SQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTA 416 (572)
Q Consensus 337 ~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~iG~~~~~i~~~~ 416 (572)
.. ........... ... .+.... ........+...+......++.+| .++++.+.++.++.+++.+.
T Consensus 240 ~~-~~~~~~~~~~~-~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r-------~~~~~~~~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 240 DQ-QFANFFTSFFA-TGE----QGTRVF-GYVTTMGELLNASIMFFAPLIINR-------IGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp HH-HHHHHHTTSSS-CHH----HHHHHH-HHHHHHHHHHHHHHHTTHHHHHHH-------HCHHHHHHHHHHHHHHHHHH
T ss_pred hc-ccccccccccc-ccc----cchhhh-cccccccccccccchhhhhhhhcc-------cccccchhhhHHHHHHhhhc
Confidence 10 00011111111 110 011111 111111122222222233333344 45557788888888777666
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccccchhhHHHHHHHHHHHHHHHHhhhheeeecccCChhhHHHHHHHH-HHHHHHHHH
Q 008264 417 WAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANL 495 (572)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~~ 495 (572)
.... .+.+.+....++.+++.+...+....++.+.+|++.||++.|+. ++...+|..
T Consensus 306 ~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 363 (417)
T d1pv7a_ 306 SSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHTC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred cccc----------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 5543 25667777788899999999999999999999999999999985 567789999
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 008264 496 VASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 555 (572)
Q Consensus 496 lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~lv~~~~~~~~~~~~~~~~ 555 (572)
+++.+.+.+.+..+ +...|++.+++.++..++.++..++.++.+
T Consensus 364 i~~~~~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 364 FMSVLAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred HHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 99999888765442 466788888888888777777766554443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.2e-10 Score=119.88 Aligned_cols=178 Identities=16% Similarity=0.071 Sum_probs=137.6
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHH
Q 008264 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (572)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 96 (572)
|.++......++.....+++..+.+.|+.+.++.+..+.++......+...++.+++|+++||+ +||+..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 3445556667777777788888999999999999999999999999999999999999999998 987755544443333
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCccCCCcchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHH
Q 008264 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (572)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (572)
......... . ....+.+..++..++.|++.++..+....+..|.+|+ +.|+++.+
T Consensus 328 ~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g 382 (447)
T d1pw4a_ 328 VTIATIVYW-M-----------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAG 382 (447)
T ss_dssp HHHHHHHTT-S-----------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHHHHH
T ss_pred HHHHHHHHH-h-----------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence 322222211 0 0122566677778888999988899999999999998 55899999
Q ss_pred HHHHHHHH-HHHHHhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008264 177 WYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (572)
Q Consensus 177 ~~~~~~~~-g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 220 (572)
+.+...++ |.+++|.+.+++.+.+||+..|++.+.+.+++.++.
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 98888877 567789999999999999999988776666555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.7e-11 Score=123.62 Aligned_cols=147 Identities=8% Similarity=0.024 Sum_probs=123.5
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCccCCC
Q 008264 47 EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESAT 126 (572)
Q Consensus 47 ~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (572)
+.+.+....+.......++..++.++.+++.||+ |||+++..+.++..++.+...+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 310 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT--------------------- 310 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC---------------------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc---------------------
Confidence 3455666777788888889999999999999998 999999999999988888887654
Q ss_pred cchhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCcccccchhhhHHHHH-HHHHHHHHHHhhhhhheecccccchh
Q 008264 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGWKVG 205 (572)
Q Consensus 127 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~w~~~ 205 (572)
+.+.+++..++.|++.+...+...+++.|.+|+ +.|+++.++.+ ....+|..++|.+.|++.+..||+.+
T Consensus 311 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~ 381 (417)
T d1pv7a_ 311 --SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred --ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 677788889999999999999999999999998 55899999754 55679999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 008264 206 FGVPAVIMLLSALSFFLAS 224 (572)
Q Consensus 206 f~~~~~~~~~~~~~~~~~~ 224 (572)
|++.+++.++..++..+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 382 YLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9988777666655544433
|