Citrus Sinensis ID: 008293

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-
MASNPSTLLIISLFLLLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVDHYRKLPSTSYLSTIRALEDCSLLAGMNVDSLSHASNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFYSISLALVIHGWFSGMKNGRWLTERKHLLSNTRPGINGDHLPLKMSSRDRRIYESVTGRKLLQANDDQFVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS
cccccHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEccccccccccHHHHHHHcccccccccccEEEEEEEcEEEEEEEEEccccccEEEEEcccccEEEEEccccccccccccEEEEEEEEccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEccccccccccccEEEEccEEEEEccEEEccccEEEEccEEEEEccccccccEEEEccccccccccEEEEEccEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHccHHHHHccccccccccccccccccc
MASNPSTLLIISLFLLLFFSLSLADDFATSlfsstldpickftphpdfckanlpgnkpgtvhdygrysVHQSLSVARKFQSLVDHyrklpstsylSTIRALEdcsllagmnvdslshasntinstntlhslqADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAplqngakfYSISLALVIHGWFsgmkngrwLTERKHLlsntrpgingdhlplkmssrdrRIYESVTGrkllqanddqfvdnvSVDQMVvvnpngtadytTISDavaaapnstdsssngYYLIYVAAGVYEEYVSipkqkknlmmigagkgltvitgnrsyvdgwttfntATFAVVGQGFVAVNITfrntagptkhqAVAVrngadkstfyscsfegyQDTLYAHSLRQFYrdcdiygtidfIFGNAAVVFqncnmyprrpldnqfnaitaqgrtdpnqntgisihnctiKAADDLANSINATQtylgrpwkeysRTVYMQSFMDslidpagwkewsgdfalnttyyaefsntgpgsdttnrvtwpgyhvindtdaecftvssfiegdawlpetgvpfdgdlls
MASNPSTLLIISLFLLLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVDHYRKLPSTSYLSTIRALEDCSLLAGMNVDSLSHASNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFYSISLALVIHGWFSGMKNGRWLTERKHLLsntrpgingdhlplkmssRDRRIYESVtgrkllqanddqfvdnVSVDQMVVVNPNGTADYTTISDAVAAapnstdsssngYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATqtylgrpwkeYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFsntgpgsdttnRVTWPGYHVINDTDAECFTVSSFIegdawlpetgvpfdgdlls
MASNPSTlliislflllffslslADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVDHYRKLPSTSYLSTIRALEDCSLLAGMNVDSLSHASNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFYSISLALVIHGWFSGMKNGRWLTERKHLLSNTRPGINGDHLPLKMSSRDRRIYESVTGRKLLQANDDQFvdnvsvdqmvvvnPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS
******TLLIISLFLLLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVDHYRKLPSTSYLSTIRALEDCSLLAGMNVDSLSHASNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFYSISLALVIHGWFSGMKNGRWLTERKHLLSN********************IYESVTGRKLLQANDDQFVDNVSVDQMVVVNPNGTADYTTISDAV***********NGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQ*******NTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVPF******
*****STLLIISLFLLLFFSLS****************ICKFTPHPDFCK***************RYSVHQSLSVARKFQ*******************ALEDCSLLAGMNVDSLSHAS*************ADDLHTLLSALLTNQQTCLDGLLETAS************QNGAKFYSISLALVIHGW******************************LKMSSRDRRIYESVTGRKLL**NDDQFVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS
MASNPSTLLIISLFLLLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVDHYRKLPSTSYLSTIRALEDCSLLAGMNVDSLSHASNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFYSISLALVIHGWFSGMKNGRWLTERKHLLSNTRPGINGDHLPLKMSSRDRRIYESVTGRKLLQANDDQFVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS
***NPSTLLIISLFLLLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVDHYRKLPSTSYLSTIRALEDCSLLAGMNVDSLSHASNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFYSISLALVIHGWFSG*************************LPL**SSRDRRIYESV*GRKLLQ*N***FVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVPFDG****
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASNPSTLLIISLFLLLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVDHYRKLPSTSYLSTIRALEDCSLLAGMNVDSLSHASNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFYSISLALVIHGWFSGMKNGRWLTERKHLLSNTRPGINGDHLPLKMSSRDRRIYESVTGRKLLQANDDQFVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query571 2.2.26 [Sep-21-2011]
Q8RXK7573 Probable pectinesterase/p yes no 0.978 0.975 0.565 0.0
Q9SRX4579 Probable pectinesterase/p no no 0.973 0.960 0.555 1e-177
O22256560 Probable pectinesterase/p no no 0.963 0.982 0.546 1e-171
Q94CB1619 Probable pectinesterase/p no no 0.903 0.833 0.466 1e-144
Q9FF77624 Probable pectinesterase/p no no 0.908 0.831 0.470 1e-142
Q43062522 Pectinesterase/pectineste N/A no 0.777 0.850 0.463 1e-115
O04887510 Pectinesterase 2 OS=Citru no no 0.882 0.988 0.427 1e-110
Q9LXK7527 Probable pectinesterase/p no no 0.898 0.973 0.423 1e-110
P09607550 Pectinesterase 2.1 OS=Sol N/A no 0.886 0.92 0.420 1e-108
P85076321 Pectinesterase OS=Actinid N/A no 0.534 0.950 0.625 1e-108
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function desciption
 Score =  635 bits (1639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/578 (56%), Positives = 409/578 (70%), Gaps = 19/578 (3%)

Query: 8   LLIISLFLLLFFSLSLADDFATS---LFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDY 64
           +L + LFL+  F LSL   F  S   L S++   ICK TP P FCK+  P    G V +Y
Sbjct: 1   MLSLKLFLVTLF-LSLQTLFIASQTLLPSNSSSTICKTTPDPKFCKSVFPQTSQGDVREY 59

Query: 65  GRYSVHQSLSVARKFQSLVDHYRKLPSTSY-LSTIRALEDCSLLAGMNVDSLSHASNTIN 123
           GR+S+ +SL+ +RKF   +D Y K  +     S + AL+DC  LA +  D L  +  T+N
Sbjct: 60  GRFSLRKSLTQSRKFTRTIDRYLKRNNALLSQSAVGALQDCRYLASLTTDYLITSFETVN 119

Query: 124 ---STNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASAS-RITQALLAPLQNGAKFYS 179
              S+ TL   +AD++ TLLSA LTN+QTCLDG+   AS+S  I   +  PL N  K +S
Sbjct: 120 ITTSSKTLSFSKADEIQTLLSAALTNEQTCLDGINTAASSSWTIRNGVALPLINDTKLFS 179

Query: 180 ISLALVIHGWFSGMKNG----RWLTERKHLLSNTRP--GINGDHLPLKMSSRDRRIYESV 233
           +SLAL   GW    K       W    K+  S+T+P        LPLKM+   R +YES+
Sbjct: 180 VSLALFTKGWVPKKKKQVASYSW-AHPKNTHSHTKPFRHFRNGALPLKMTEHTRAVYESL 238

Query: 234 TGRKLLQANDDQFVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVA 293
           + RKL  A+DD  V+ V V  +V VN NGT ++TTI++AV +APN TD ++ GY++IYV 
Sbjct: 239 SRRKL--ADDDNDVNTVLVSDIVTVNQNGTGNFTTITEAVNSAPNKTDGTA-GYFVIYVT 295

Query: 294 AGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNIT 353
           +GVYEE V I K K+ LMMIG G   TV+TGNR+ VDGWTTFN+ATFAV    FVAVN+T
Sbjct: 296 SGVYEENVVIAKNKRYLMMIGDGINRTVVTGNRNVVDGWTTFNSATFAVTSPNFVAVNMT 355

Query: 354 FRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGN 413
           FRNTAGP KHQAVA+R+ AD S FYSCSFE YQDTLY HSLRQFYR+CDIYGT+DFIFGN
Sbjct: 356 FRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGN 415

Query: 414 AAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTY 473
           AAVVFQ+CN+YPR+P+ NQFNAITAQGRTDPNQNTGISIHNCTIK ADDL +S    +TY
Sbjct: 416 AAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTY 475

Query: 474 LGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWP 533
           LGRPWKEYSRTV+MQS++D +++P GW+EW+GDFAL+T YYAE++NTG GS TT+RV WP
Sbjct: 476 LGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWP 535

Query: 534 GYHVINDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS 571
           GYHVIN TDA  FTV +F+ GD W+ ++GVP+   LLS
Sbjct: 536 GYHVINSTDANNFTVENFLLGDGWMVQSGVPYISGLLS 573
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function description
>sp|O22256|PME20_ARATH Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1 Back     alignment and function description
>sp|P09607|PME21_SOLLC Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2 Back     alignment and function description
>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query571
255542796 923 Pectinesterase-2 precursor, putative [Ri 0.987 0.611 0.656 0.0
255564230566 Pectinesterase-2 precursor, putative [Ri 0.912 0.920 0.661 0.0
224123846567 predicted protein [Populus trichocarpa] 0.936 0.943 0.654 0.0
359479963556 PREDICTED: probable pectinesterase/pecti 0.942 0.967 0.618 0.0
224128446560 predicted protein [Populus trichocarpa] 0.968 0.987 0.614 0.0
224068368558 predicted protein [Populus trichocarpa] 0.973 0.996 0.613 0.0
255542794548 Pectinesterase-2 precursor, putative [Ri 0.931 0.970 0.643 0.0
356536715559 PREDICTED: probable pectinesterase/pecti 0.971 0.992 0.621 0.0
356505590556 PREDICTED: probable pectinesterase/pecti 0.908 0.933 0.637 0.0
356572750555 PREDICTED: probable pectinesterase/pecti 0.908 0.935 0.635 0.0
>gi|255542796|ref|XP_002512461.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223548422|gb|EEF49913.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/574 (65%), Positives = 437/574 (76%), Gaps = 10/574 (1%)

Query: 1   MASNPSTLLIISLFL-LLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPG 59
           MA N S L  ISLFL L+ FS  LA+ F+TS  S      C FTPHP FCK++LP NK G
Sbjct: 1   MAFNLSILSAISLFLFLILFSPCLAN-FSTST-SGAPQTFCNFTPHPSFCKSSLPSNKSG 58

Query: 60  TVHDYGRYSVHQSLSVARKFQSLVDHYRKLPSTSY-LSTIRALEDCSLLAGMNVDSLSHA 118
            +HDYGR+S+HQ+LS ARK  SLV ++ +LPS  +  STI AL+DC  L  +N+DSLS+ 
Sbjct: 59  NIHDYGRFSIHQTLSHARKLLSLVQYFLRLPSIVFPSSTIGALQDCKFLTQLNIDSLSYT 118

Query: 119 SNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFY 178
             +IN TNTL SL+A DL TLLSA LTN QTCLDGL  +  AS I  +LL  L NG K  
Sbjct: 119 LRSINYTNTLQSLEASDLQTLLSASLTNLQTCLDGLQVSRPASGIIDSLLGSLSNGTKHC 178

Query: 179 SISLALVIHGWFSGMKNGRWL-TERKHLLSNTRPGINGDHLPLKMSSRDRRIYESVTGRK 237
           SISLA   HGW    K GR+L +ER+H  SN R  IN D LPL+MS +D+ IY+SV  RK
Sbjct: 179 SISLAFFTHGWIPATKKGRFLLSEREHTFSNLRNSIN-DGLPLRMSKQDQEIYQSVNKRK 237

Query: 238 LLQANDDQFVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVY 297
           LLQA  +    +V V+Q+V+V+  G+ ++TTI+DAVAAAPN+TD S  GY+LIYV  G Y
Sbjct: 238 LLQATVNT---SVLVNQVVIVDRKGSGNFTTINDAVAAAPNNTDLSG-GYFLIYVKQGQY 293

Query: 298 EEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNT 357
           +EYVSIP  KKN+MMIG G G T ITGNRS VDGWTTFN+ATFAVVGQGFVAVNITFRNT
Sbjct: 294 KEYVSIPSNKKNIMMIGDGIGRTEITGNRSVVDGWTTFNSATFAVVGQGFVAVNITFRNT 353

Query: 358 AGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVV 417
           AG  KHQAVAVRNGAD S FYSC FEGYQDTLY HSLRQFYRDC+IYGTID+IFGNAAVV
Sbjct: 354 AGAIKHQAVAVRNGADMSAFYSCGFEGYQDTLYTHSLRQFYRDCEIYGTIDYIFGNAAVV 413

Query: 418 FQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRP 477
           FQNC +  R PL+NQFNAITAQGRTDPNQNTGISI NC+IK A DLA S    +TYLGRP
Sbjct: 414 FQNCRINSRLPLNNQFNAITAQGRTDPNQNTGISIQNCSIKEAKDLATSNLTIKTYLGRP 473

Query: 478 WKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHV 537
           WKEYSRT++MQS++ SLIDPAGW  WSGDFAL T YYAEF+NTG GS T NRVTW GYHV
Sbjct: 474 WKEYSRTIFMQSYIASLIDPAGWTPWSGDFALATLYYAEFNNTGVGSRTDNRVTWAGYHV 533

Query: 538 INDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS 571
           IN TDA  FTV+ F++GD+WL  TGVP+ G L+S
Sbjct: 534 INATDAANFTVTKFVQGDSWLQATGVPYSGGLIS 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564230|ref|XP_002523112.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223537674|gb|EEF39297.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224123846|ref|XP_002330223.1| predicted protein [Populus trichocarpa] gi|222871679|gb|EEF08810.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359479963|ref|XP_002268492.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128446|ref|XP_002320332.1| predicted protein [Populus trichocarpa] gi|222861105|gb|EEE98647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068368|ref|XP_002302726.1| predicted protein [Populus trichocarpa] gi|222844452|gb|EEE81999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255542794|ref|XP_002512460.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223548421|gb|EEF49912.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356536715|ref|XP_003536881.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356505590|ref|XP_003521573.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356572750|ref|XP_003554529.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query571
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 0.914 0.932 0.569 5e-163
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.943 0.940 0.563 6.3e-163
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.943 0.930 0.546 5.1e-154
TAIR|locus:2175334624 AT5G04970 [Arabidopsis thalian 0.542 0.496 0.633 8.7e-132
TAIR|locus:2103212619 AT3G10720 [Arabidopsis thalian 0.915 0.844 0.465 1.9e-129
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.537 0.582 0.576 1.7e-103
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.523 0.585 0.574 2.5e-100
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.523 0.5 0.576 5.3e-100
TAIR|locus:2078047543 AT3G05620 [Arabidopsis thalian 0.516 0.543 0.564 2.6e-98
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.907 0.882 0.417 5.8e-98
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
 Identities = 304/534 (56%), Positives = 380/534 (71%)

Query:    39 ICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVD-HYRKLPSTSYLST 97
             IC+F P P +C++ LP N+PG ++ YGR S+ +SLS AR+F S++D    +    +  ST
Sbjct:    38 ICRFAPDPSYCRSVLP-NQPGDIYSYGRLSLRRSLSRARRFISMIDAELDRKGKVAAKST 96

Query:    98 IRALEDCSLLAGMNVDSLSHASNTINSTNTLHSLQADDLHTLLSALLTNQQTCLDGLLET 157
             + ALEDC  LA + +D L  +S T +ST TL   +A+D+HT LSA +TN+QTCL+GL  T
Sbjct:    97 VGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDVHTFLSAAITNEQTCLEGLKST 156

Query:   158 ASASRITQALLAPLQNGAKFYSISLALVIHGWFSGMKNGRWLTERKHLLSNTRPGINGDH 217
             AS +     L   L N  K Y +SLAL   GW    +  R + + +        G     
Sbjct:   157 ASEN----GLSGDLFNDTKLYGVSLALFSKGWVPRRQRSRPIWQPQARFKKFF-GFRNGK 211

Query:   218 LPLKMSSRDRRIYESVTGRKLLQANDDQFXXXXXXXXXXXXXPNGTADYTTISDAVAAAP 277
             LPLKM+ R R +Y +VT RKLLQ++ D                NGT ++TTI+ A+AAAP
Sbjct:   212 LPLKMTERARAVYNTVTRRKLLQSDAD----AVQVSDIVTVIQNGTGNFTTINAAIAAAP 267

Query:   278 NSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNT 337
             N TD S NGY+LIYV AG+YEEYV +PK K+ +MMIG G   TVITGNRS VDGWTTFN+
Sbjct:   268 NKTDGS-NGYFLIYVTAGLYEEYVEVPKNKRYVMMIGDGINQTVITGNRSVVDGWTTFNS 326

Query:   338 ATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQF 397
             ATF + G  F+ VNIT RNTAGPTK QAVA+R+G D S FYSCSFE YQDTLY HSLRQF
Sbjct:   327 ATFILSGPNFIGVNITIRNTAGPTKGQAVALRSGGDLSVFYSCSFEAYQDTLYTHSLRQF 386

Query:   398 YRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTI 457
             YR+CD+YGT+DFIFGNAAVV QNCN+YPR+P   Q N +TAQGRTDPNQNTG +IH CTI
Sbjct:   387 YRECDVYGTVDFIFGNAAVVLQNCNLYPRQPRKGQSNEVTAQGRTDPNQNTGTAIHGCTI 446

Query:   458 KAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEF 517
             + ADDLA S    +TYLGRPWKEYSRTV MQ+++D  ++P+GW  WSGDFAL+T YYAE+
Sbjct:   447 RPADDLATSNYTVKTYLGRPWKEYSRTVVMQTYIDGFLEPSGWNAWSGDFALSTLYYAEY 506

Query:   518 SNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS 571
             +NTGPGSDTTNRVTWPGYHVIN TDA  FTV++F+ G+ W+ +TGVPF G L++
Sbjct:   507 NNTGPGSDTTNRVTWPGYHVINATDASNFTVTNFLVGEGWIGQTGVPFVGGLIA 560
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078047 AT3G05620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXK7PME41_ARATH3, ., 1, ., 1, ., 1, 10.56570.97890.9755yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query571
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 0.0
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-163
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-158
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-156
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-156
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-154
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-152
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-152
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-147
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-143
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-142
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-140
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-132
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-120
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-120
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-117
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-117
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-109
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-108
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-73
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 6e-70
PLN02773317 PLN02773, PLN02773, pectinesterase 8e-68
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-65
PLN02304379 PLN02304, PLN02304, probable pectinesterase 4e-61
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 5e-56
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-55
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 5e-54
PLN02634359 PLN02634, PLN02634, probable pectinesterase 4e-53
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-52
PLN02176340 PLN02176, PLN02176, putative pectinesterase 4e-49
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 9e-38
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 4e-18
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 6e-18
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-13
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 3e-08
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  890 bits (2301), Expect = 0.0
 Identities = 379/573 (66%), Positives = 431/573 (75%), Gaps = 9/573 (1%)

Query: 1   MASNPSTLLIISLFLLLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGT 60
           M+S    L  ++L LLLFFS S A D   S   S    IC  TP P FCK+ LP N+PG 
Sbjct: 1   MSSKLILLTTLALLLLLFFSSSSASDPPPSTPVSP-STICNTTPDPSFCKSVLPHNQPGN 59

Query: 61  VHDYGRYSVHQSLSVARKFQSLVDHYRKLPST-SYLSTIRALEDCSLLAGMNVDSLSHAS 119
           V+DYGR+SV +SLS +RKF SLVD Y K  ST    S IRALEDC  LAG+N+D L  + 
Sbjct: 60  VYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLSSF 119

Query: 120 NTINSTN-TLHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALLAPLQNGAKFY 178
            T+NS++ TL   QADD+ TLLSA+LTNQQTCLDGL   +SA  +   L  PL N  K Y
Sbjct: 120 ETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLAVPLSNDTKLY 179

Query: 179 SISLALVIHGWFSGMKNGRWLTERKHLLSNTRPGINGDHLPLKMSSRDRRIYESVTGRKL 238
           S+SLAL   GW    K GR  T+RK      R   NG  LPLKM+ + R +YESV+ RKL
Sbjct: 180 SVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAFRNG-RLPLKMTEKTRAVYESVSRRKL 238

Query: 239 LQANDDQFVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYE 298
           L  +     + V V  +V VN NGT ++TTI+DAVAAAPN+TD S NGY++IYV AGVYE
Sbjct: 239 LDGD----ANAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGS-NGYFVIYVTAGVYE 293

Query: 299 EYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTA 358
           EYVSIPK KK LMMIG G   TVITGNRS VDGWTTFN+ATFAVVGQ FVAVNITFRNTA
Sbjct: 294 EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTA 353

Query: 359 GPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVF 418
           GP KHQAVA+R+GAD STFYSCSFE YQDTLY HSLRQFYR+CDIYGT+DFIFGNAAVVF
Sbjct: 354 GPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVF 413

Query: 419 QNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPW 478
           QNCN+YPR P+  QFN ITAQGRTDPNQNTG SI NCTIKAADDLA+S    +TYLGRPW
Sbjct: 414 QNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPW 473

Query: 479 KEYSRTVYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVI 538
           KEYSRTV MQS++D LIDPAGW  WSGDFAL+T YYAE++NTGPGSDTTNRVTWPGYHVI
Sbjct: 474 KEYSRTVVMQSYIDGLIDPAGWMPWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVI 533

Query: 539 NDTDAECFTVSSFIEGDAWLPETGVPFDGDLLS 571
           N TDA  FTVS+F+ GD WLP+TGVPF   L+S
Sbjct: 534 NATDAANFTVSNFLLGDGWLPQTGVPFTSGLIS 566

Length = 566
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 571
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.93
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.93
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.9
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.31
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.65
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.61
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.57
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.08
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.07
KOG1777 625 consensus Putative Zn-finger protein [General func 96.59
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.53
PRK10531422 acyl-CoA thioesterase; Provisional 96.5
PLN02793443 Probable polygalacturonase 96.36
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.14
PLN02218431 polygalacturonase ADPG 96.06
PLN02773317 pectinesterase 95.96
PLN02682369 pectinesterase family protein 95.88
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.65
PLN02671359 pectinesterase 95.57
PLN02634359 probable pectinesterase 95.32
PLN02480343 Probable pectinesterase 95.22
PLN02176340 putative pectinesterase 95.19
PLN02497331 probable pectinesterase 94.77
PLN02665366 pectinesterase family protein 94.7
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.69
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.67
PLN02304379 probable pectinesterase 94.66
PLN03003456 Probable polygalacturonase At3g15720 94.62
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.34
PLN02432293 putative pectinesterase 94.3
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 94.11
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 94.09
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.89
PLN03010409 polygalacturonase 93.88
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.79
smart00656190 Amb_all Amb_all domain. 93.73
PLN02916502 pectinesterase family protein 93.72
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.65
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.65
PLN02197588 pectinesterase 93.25
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.17
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.01
PLN02416541 probable pectinesterase/pectinesterase inhibitor 92.99
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.94
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.93
PLN02301548 pectinesterase/pectinesterase inhibitor 92.9
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 92.84
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.63
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.46
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 92.34
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.75
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 91.75
PLN02155394 polygalacturonase 91.74
PLN02170529 probable pectinesterase/pectinesterase inhibitor 91.59
PLN02314586 pectinesterase 91.06
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 89.44
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 88.33
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 85.17
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 84.84
PLN02188404 polygalacturonase/glycoside hydrolase family prote 82.71
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=3.6e-143  Score=1177.25  Aligned_cols=550  Identities=67%  Similarity=1.059  Sum_probs=483.9

Q ss_pred             HHHHHHHHHHhhccccccCCCCccchhcccCCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008293           11 ISLFLLLFFSLSLADDFATSLFSSTLDPICKFTPHPDFCKANLPGNKPGTVHDYGRYSVHQSLSVARKFQSLVDHYRKLP   90 (571)
Q Consensus        11 ~~~l~ll~~~~~~~~~~~~~~~~~~V~~~C~~T~yp~lC~ssL~s~~~~dp~~L~~~av~~a~~~a~~a~~~i~~ll~~~   90 (571)
                      ..|||||+|+.+.++.+.+ ..+..++++|+.|+||++|+++|++....+|++|++++|+++++++..+...++++....
T Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~C~~T~YP~~C~ssLs~s~~~d~~~l~~aaL~~tl~~a~~a~~~vs~L~~~~   89 (566)
T PLN02713         11 LALLLLLFFSSSSASDPPP-STPVSPSTICNTTPDPSFCKSVLPHNQPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRN   89 (566)
T ss_pred             HHHHHHHhcchhhhcCCCc-CCCCCCccccCCCCChHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4456777777777765432 234578899999999999999998755678999999999999999999999999886543


Q ss_pred             CC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccccChhhHHHHHHHHhhhHHHHHhhhcCCccchhhhHhhh
Q 008293           91 ST-SYLSTIRALEDCSLLAGMNVDSLSHASNTINSTNT-LHSLQADDLHTLLSALLTNQQTCLDGLLETASASRITQALL  168 (571)
Q Consensus        91 ~~-~d~~~k~AL~DC~ely~daid~L~~S~~~l~~~~~-~~~~~~~Dv~twLSAAlT~q~TC~DgF~e~~~~~~~~~~l~  168 (571)
                      +. .+++++.||+||+|||++++|+|++++.+|+.... .+....+|+|||||||||||+||+|||.+.+.+..+++.|.
T Consensus        90 ~~~~~~r~k~AL~DC~ELlddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~~k~~v~  169 (566)
T PLN02713         90 STLLSKSAIRALEDCQFLAGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLA  169 (566)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhhhhccccchhHHHHHH
Confidence            22 38899999999999999999999999999984322 23567899999999999999999999987654445778899


Q ss_pred             hhhhhHHHHHHHHHHhhhccccccccCC-ccc---ccccccccCCCCCCCCCCCCcccccccccceeccccccccccCCc
Q 008293          169 APLQNGAKFYSISLALVIHGWFSGMKNG-RWL---TERKHLLSNTRPGINGDHLPLKMSSRDRRIYESVTGRKLLQANDD  244 (571)
Q Consensus       169 ~~l~~~~~L~SNaLAiv~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~r~ll~~~~~  244 (571)
                      ..+.++++|+||+|||++..+....... ...   ...|++++.     ..++||+||+..|+++++.+.+||||+... 
T Consensus       170 ~~l~nvt~LtSNaLAlv~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~P~w~~~~d~~~~~~~~~R~ll~~~~-  243 (566)
T PLN02713        170 VPLSNDTKLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAF-----RNGRLPLKMTEKTRAVYESVSRRKLLDGDA-  243 (566)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccccccccccccccccchhcc-----ccCCCCcCccccccccccccccchhhcCcc-
Confidence            9999999999999999996321111110 000   012334431     124699999999999999999999998643 


Q ss_pred             cccccccccceEEEcCCCCCCcccHHHHHHhCcCCCCCCCCCeEEEEEeceEEeeeEEeeccCcceEEeecCCCceEEec
Q 008293          245 QFVDNVSVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITG  324 (571)
Q Consensus       245 ~~~~~~~~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~~r~~I~I~~G~Y~E~v~i~~~~~~itl~G~g~~~tiI~~  324 (571)
                         ....+..+++|++||+|+|+|||+||+++|.++.. +++|++||||||+|+|+|.|++.|+||||+|+|+++|||+|
T Consensus       244 ---~~~~~~~~~~Va~dGsG~f~TIq~Av~a~p~~~~~-~~~~~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~  319 (566)
T PLN02713        244 ---NAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDG-SNGYFVIYVTAGVYEEYVSIPKNKKYLMMIGDGINQTVITG  319 (566)
T ss_pred             ---ccccCCceEEECCCCCCCCCCHHHHHHhhhcccCC-CCceEEEEEcCcEEEEEEEecCCCceEEEEecCCCCcEEEc
Confidence               11234457999999999999999999999987432 35789999999999999999999999999999999999999


Q ss_pred             cccccCCcccccceeEEEEcCcEEEEEeEeecCCCCCccceeeeecCCCceEEEeceeecccceeeccCCceeeeecEEe
Q 008293          325 NRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIY  404 (571)
Q Consensus       325 ~~~~~~g~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTl~~~~~r~~~~~c~I~  404 (571)
                      ++++.+|++|++||||.|.|++|+++||||+|++|+.++||||||+++|+++||+|+|+|||||||+|.+|||||+|+|+
T Consensus       320 ~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~  399 (566)
T PLN02713        320 NRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIY  399 (566)
T ss_pred             CCcccCCCccccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccceeeccceEEEeeceeeecCCCCCCceeEEecCCCCCCCCeEEEEEcCEEeecCCccccccccceEeeccccCCCcE
Q 008293          405 GTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRT  484 (571)
Q Consensus       405 G~vDfIfG~~~avf~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~  484 (571)
                      |+||||||+|++|||||+|++|+|++++.|+||||||++|++++||||+||+|++++++.+.....++||||||++||||
T Consensus       400 GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~  479 (566)
T PLN02713        400 GTVDFIFGNAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRT  479 (566)
T ss_pred             cccceecccceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCcceE
Confidence            99999999999999999999999988889999999999999999999999999999887666566789999999999999


Q ss_pred             EEeccCCCCccCCCCCCCCCCCCCCcccEEEEeccccCCCCCCCcccCCCCCcCCHHHHccccccccccCCCCCCCCCCC
Q 008293          485 VYMQSFMDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVINDTDAECFTVSSFIEGDAWLPETGVP  564 (571)
Q Consensus       485 v~~~s~l~~~i~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~l~~~ea~~~t~~~fi~g~~W~p~~~~p  564 (571)
                      |||+|+|+++|+|+||.+|+++++++|+||+||+|+|||+++++||+|+++|+|+.+||.+||+.+||+|++|+|.+|||
T Consensus       480 V~~~s~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~s~Rv~w~g~~~l~~~ea~~ft~~~fi~g~~Wl~~~gvp  559 (566)
T PLN02713        480 VVMQSYIDGLIDPAGWMPWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLLGDGWLPQTGVP  559 (566)
T ss_pred             EEEecccCCeecccccCCCCCCCCCCceEEEEecccCCCCCcCCCccccceeecCHHHhhhccHhheeCCCCcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 008293          565 FDGDLLS  571 (571)
Q Consensus       565 ~~~~~~~  571 (571)
                      |++||+.
T Consensus       560 ~~~gl~~  566 (566)
T PLN02713        560 FTSGLIS  566 (566)
T ss_pred             cccccCC
Confidence            9999963

>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query571
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 9e-98
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-95
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 6e-21
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 6e-21
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 5e-20
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-18
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  354 bits (908), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 173/306 (56%), Positives = 210/306 (68%), Gaps = 5/306 (1%)
Query: 261 NGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLT 320
           +GT DY T+++AVAAAP+ + +     Y+IYV  G Y+E V +   K NLM++G G   T
Sbjct: 10  DGTGDYQTLAEAVAAAPDKSKTR----YVIYVKRGTYKENVEVASNKMNLMIVGDGMYAT 65
Query: 321 VITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSC 380
            ITG+ + VDG TTF +AT A VGQGF+  +I  +NTAGP K QAVA+R GAD S    C
Sbjct: 66  TITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRC 125
Query: 381 SFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNAITAQG 440
             + YQDTLYAHS RQFYRD  + GT+DFIFGNAAVVFQ C +  R+P   Q N +TAQG
Sbjct: 126 RIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQG 185
Query: 441 RTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLIDPAGW 500
           RTDPNQ TG SI  C I A+ DL   +    TYLGRPWKEYSRTV M+S++  LI+PAGW
Sbjct: 186 RTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGW 245
Query: 501 KEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVIND-TDAECFTVSSFIEGDAWLP 559
            EW GDFAL T YY EF N GPG+ T+ RV WPGYHVI D   A  FTV+  I+G +WL 
Sbjct: 246 AEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLR 305
Query: 560 ETGVPF 565
            TGV +
Sbjct: 306 STGVAY 311
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query571
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-174
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-173
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-133
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-127
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-107
1x91_A153 Invertase/pectin methylesterase inhibitor family p 2e-19
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 9e-19
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  493 bits (1271), Expect = e-174
 Identities = 176/315 (55%), Positives = 212/315 (67%), Gaps = 5/315 (1%)

Query: 256 VVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGA 315
            VV  +GT DY T+++AVAAAP+     S   Y+IYV  G Y+E V +   K NLM++G 
Sbjct: 5   AVVAQDGTGDYQTLAEAVAAAPDK----SKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60

Query: 316 GKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKS 375
           G   T ITG+ + VDG TTF +AT A VGQGF+  +I  +NTAGP K QAVA+R GAD S
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120

Query: 376 TFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNA 435
               C  + YQDTLYAHS RQFYRD  + GT+DFIFGNAAVVFQ C +  R+P   Q N 
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNM 180

Query: 436 ITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLI 495
           +TAQGRTDPNQ TG SI  C I A+ DL   +    TYLGRPWKEYSRTV M+S++  LI
Sbjct: 181 VTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI 240

Query: 496 DPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVI-NDTDAECFTVSSFIEG 554
           +PAGW EW GDFAL T YY EF N GPG+ T+ RV WPGYHVI +   A  FTV+  I+G
Sbjct: 241 NPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQG 300

Query: 555 DAWLPETGVPFDGDL 569
            +WL  TGV +   L
Sbjct: 301 GSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query571
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.95
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.95
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.94
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.63
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.41
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.57
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.24
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.83
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.39
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.39
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.38
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.18
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.12
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.09
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.02
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 96.96
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.81
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.8
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.77
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.74
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.67
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.64
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.6
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.47
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.43
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.33
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.24
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.21
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.99
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.94
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.72
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.65
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.26
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.2
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.96
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.79
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.51
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.43
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.01
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 87.98
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 87.37
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 86.19
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 85.76
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 85.64
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 84.72
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 81.61
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 81.57
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=9e-96  Score=757.10  Aligned_cols=314  Identities=56%  Similarity=0.940  Sum_probs=300.1

Q ss_pred             cceEEEcCCCCCCcccHHHHHHhCcCCCCCCCCCeEEEEEeceEEeeeEEeeccCcceEEeecCCCceEEeccccccCCc
Q 008293          253 DQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVDGW  332 (571)
Q Consensus       253 ~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~~r~~I~I~~G~Y~E~v~i~~~~~~itl~G~g~~~tiI~~~~~~~~g~  332 (571)
                      +++++|++||+|+|+|||+||+++|+++    ++|++|+|+||+|+|+|.|++.|++|||+|+|+++|+|+++.+..+|.
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~----~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~   77 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKS----KTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGS   77 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSC----SSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTC
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCC----CceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCC
Confidence            4689999999999999999999999984    468999999999999999999999999999999999999999888899


Q ss_pred             ccccceeEEEEcCcEEEEEeEeecCCCCCccceeeeecCCCceEEEeceeecccceeeccCCceeeeecEEeeccceeec
Q 008293          333 TTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFG  412 (571)
Q Consensus       333 ~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTl~~~~~r~~~~~c~I~G~vDfIfG  412 (571)
                      +|++++||.|.+++|+++||||+|++|+.++|||||++.+|+++||||+|+|||||||++.+||||++|+|+|+||||||
T Consensus        78 ~t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG  157 (317)
T 1xg2_A           78 TTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFG  157 (317)
T ss_dssp             CSGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             cccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcC
Confidence            99999999999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEeeceeeecCCCCCCceeEEecCCCCCCCCeEEEEEcCEEeecCCccccccccceEeeccccCCCcEEEeccCCC
Q 008293          413 NAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMD  492 (571)
Q Consensus       413 ~~~avf~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~s~l~  492 (571)
                      ++++|||+|+|+++++++++.++||||||+++.+++||||+||+|++++++.+.....++||||||++|+|+|||+|+|+
T Consensus       158 ~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~  237 (317)
T 1xg2_A          158 NAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLG  237 (317)
T ss_dssp             CCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEEC
T ss_pred             CceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccC
Confidence            99999999999999988788899999999999999999999999999987765545568999999999999999999999


Q ss_pred             CccCCCCCCCCCCCCCCcccEEEEeccccCCCCCCCcccCCCCCcCC-HHHHccccccccccCCCCCCCCCCCCCCCCC
Q 008293          493 SLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVIN-DTDAECFTVSSFIEGDAWLPETGVPFDGDLL  570 (571)
Q Consensus       493 ~~i~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~l~-~~ea~~~t~~~fi~g~~W~p~~~~p~~~~~~  570 (571)
                      ++|+|+||.+|++++++++++|+||+|+|||+++++||+|+++|+|+ ++||++||+.+||+|++|+|.++|||.+||.
T Consensus       238 ~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          238 GLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             TTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             CcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCcccccccc
Confidence            99999999999999999999999999999999999999999988885 6899999999999999999999999999985
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 571
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-147
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-93
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 4e-19
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 8e-14
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  423 bits (1089), Expect = e-147
 Identities = 175/315 (55%), Positives = 221/315 (70%), Gaps = 5/315 (1%)

Query: 256 VVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGA 315
           VVV  +G+ DY T+S+AVAAAP      S   Y+I + AGVY E V +PK+KKN+M +G 
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPED----SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGD 64

Query: 316 GKGLTVITGNRSYVDGWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKS 375
           G+  T+IT +++  DG TTFN+AT A VG GF+A +ITF+NTAG  KHQAVA+R G+D S
Sbjct: 65  GRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLS 124

Query: 376 TFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNMYPRRPLDNQFNA 435
            FY C    YQD+LY HS RQF+ +C I GT+DFIFGNAAVV Q+C+++ RRP   Q N 
Sbjct: 125 AFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNM 184

Query: 436 ITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSFMDSLI 495
           +TAQGRTDPNQNTGI I    I A  DL    ++  TYLGRPWKEYSRTV MQS + ++I
Sbjct: 185 VTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVI 244

Query: 496 DPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVI-NDTDAECFTVSSFIEG 554
           +PAGW  W G+FAL+T YY E+ NTG G+ T+ RVTW G+ VI + T+A+ FT  SFI G
Sbjct: 245 NPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAG 304

Query: 555 DAWLPETGVPFDGDL 569
            +WL  T  PF   L
Sbjct: 305 GSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query571
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.93
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.93
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.01
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.72
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.79
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.57
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.48
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.29
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.23
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 95.83
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.63
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.41
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.32
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.23
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.08
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.28
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.06
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 93.43
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 92.73
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 89.53
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 86.51
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=8.2e-99  Score=774.73  Aligned_cols=315  Identities=55%  Similarity=0.930  Sum_probs=302.1

Q ss_pred             cccceEEEcCCCCCCcccHHHHHHhCcCCCCCCCCCeEEEEEeceEEeeeEEeeccCcceEEeecCCCceEEeccccccC
Q 008293          251 SVDQMVVVNPNGTADYTTISDAVAAAPNSTDSSSNGYYLIYVAAGVYEEYVSIPKQKKNLMMIGAGKGLTVITGNRSYVD  330 (571)
Q Consensus       251 ~~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~~r~~I~I~~G~Y~E~v~i~~~~~~itl~G~g~~~tiI~~~~~~~~  330 (571)
                      .++++++|++||+|+|+|||+||+++|.++    +.|++|+|+||+|+|+|.|++.|++|||+|+|++.|+|+++.+..+
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~----~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~   79 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDS----KTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQD   79 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSC----SSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCC----CCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccC
Confidence            478899999999999999999999999873    5689999999999999999999999999999999999999998889


Q ss_pred             CcccccceeEEEEcCcEEEEEeEeecCCCCCccceeeeecCCCceEEEeceeecccceeeccCCceeeeecEEeecccee
Q 008293          331 GWTTFNTATFAVVGQGFVAVNITFRNTAGPTKHQAVAVRNGADKSTFYSCSFEGYQDTLYAHSLRQFYRDCDIYGTIDFI  410 (571)
Q Consensus       331 g~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTl~~~~~r~~~~~c~I~G~vDfI  410 (571)
                      +.+|+.++||.|.+++|+++||||+|++|+.++|||||++.+||++||+|+|+|||||||++.+||||++|+|+|+||||
T Consensus        80 ~~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFI  159 (319)
T d1gq8a_          80 GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFI  159 (319)
T ss_dssp             TCCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCE
T ss_pred             CCccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEE
Confidence            99999999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             eccceEEEeeceeeecCCCCCCceeEEecCCCCCCCCeEEEEEcCEEeecCCccccccccceEeeccccCCCcEEEeccC
Q 008293          411 FGNAAVVFQNCNMYPRRPLDNQFNAITAQGRTDPNQNTGISIHNCTIKAADDLANSINATQTYLGRPWKEYSRTVYMQSF  490 (571)
Q Consensus       411 fG~~~avf~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~s~  490 (571)
                      ||+++++||+|+|+++++..++.++||||+|+++.+++||||++|+|++++++.+.....++||||||++|+||||++|+
T Consensus       160 fG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~  239 (319)
T d1gq8a_         160 FGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS  239 (319)
T ss_dssp             EESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCE
T ss_pred             ecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecc
Confidence            99999999999999998888888999999999999999999999999999987666566789999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCcccEEEEeccccCCCCCCCcccCCCCC-cCCHHHHccccccccccCCCCCCCCCCCCCCCC
Q 008293          491 MDSLIDPAGWKEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYH-VINDTDAECFTVSSFIEGDAWLPETGVPFDGDL  569 (571)
Q Consensus       491 l~~~i~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~-~l~~~ea~~~t~~~fi~g~~W~p~~~~p~~~~~  569 (571)
                      |+++|.|+||.+|++.+++++++|+||+|+|||+++++||+|++++ +|+++||.+||.++||+|++|+|.++|||.+||
T Consensus       240 l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             ECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999999999999999999999999999999999999864 679999999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure