Citrus Sinensis ID: 008335

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MEHIETGRVPLRSVNSRDSEVPCKHKKCGLAILFFILEAVSVVLDIFEKSKGASLAAFLFSAFGFAMTIYVCFLERTFTAIKPQADRQLGILDIAFSVLQLIATLIHLILLVSDAKYNYNASVLFPLAFAIIAVLFVFKERDTSTDSSRQDLSPSANDSLLSTPFELYLSGITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKRTEKNLWRRNNC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEEEEEEccccccccccccccccEEEEccccccEEEEEEEEcccccccccEEEEEEcccccccccHHHHHHHHHHHcccEEEEEEEEEcccccccccccEEEEEEccEEEEEccccEEEEEEEccccEEEEEccccccEEEEEEccccccccccccccccccEEEcHHccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEccccccccccHHHccccccEEEEEccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEcccccccccccccccEEEEEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccEccccccccccccccEEEcccccccEEccccccccccccEEEEEEcccccEEEEcccccccEEEEcccccEEEEEEEEccccccccccEEEEEEcccccEcccHHHHHHHHHHHHcccEEEEEEEEccccccccHHHHHHEHccccEEEEccccEEEEEEEccccEEEEccccccEEEEEEEccccEccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHEEcccccccccccHcccccccEEEEEEcccccccccccHccccEEEccccccccccccccEEEEEEEEEEEcccccccccccccEEEEEEEEcccccccccccccEEEEEEEEccccccccccccccHHccccccc
Coil and Loop (DISEMBL)
mehietgrvplrsvnsrdsevpckhkkcGLAILFFILEAVSVVLDIFEKSKGASLAAFLFSAFGFAMTIYVCFLERtftaikpqadrqlGILDIAFSVLQLIATLIHLILLVSDakynynasvLFPLAFAIIAVLFVFkerdtstdssrqdlspsandsllstpFELYLSgitvegdnsennlrlsgqvqegpgiekfriigeakpggkllgypvngttlsTFQWIRFLeddtrhsiegatepeyvvtaDDINKLIALEhttiddeghegkLVTVFANehskikcdpdmqskvDMHISRGQAAFRVLLLINssentwepatlsftqsrfhvkinstdvvisegdlfniieieipiglsRQFILRRldgeshyfitnndRMRDTLVLTMRTFrrmvlpptvaafiptdTELVTYHLMNKVSARSYEQLDRFIKdielydyepselsslayhsghdkkYFFTRlsqpartvnrqaqggywrktgmpsyvndkdgdavaTKTSLtyfkkqdptskpekTHWLMKEYMLLKsqqpnqndetpwtLCVLYDFqrkrregpfkrteknlwrrnnc
Flexible Loop (DISEMBL)
mehietgrvplrsvnsrdsevpcKHKKCGLAILFFILEAVSVVLDIFEKSKGASLAAFLFSAFGFAMTIYVCFLERTFTAIKPQADRQLGILDIAFSVLQLIATLIHLILLVSDAKYNYNASVLFPLAFAIIAVLFVFKERDTstdssrqdlspsandsllstPFELYLSGITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIRFLEDDTRHSiegatepeyvvtaDDINKLIALEHttiddeghEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWEPATlsftqsrfhvkINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDGEshyfitnndrmrdTLVLTMRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFtrlsqpartvnrqaqggywrktgmpsyvndKDGDAVATKTsltyfkkqdptskpeKTHWLMKEYMLLKSqqpnqndetpWTLCVLYDfqrkrregpfkrteknlwrrnnc
Low Complexity Region (SEG)
MEHIETGRVPLRSVNSRDSEVPCKHKKCGLAILFFILEAVSVVLDIFEKSKgaslaaflfsafgfaMTIYVCFLERTFTAIKPQADRQLGILDIAFSVLQLIATLIHLILLVSDAKYNYNASVLFPLAFAIIAVLFVFKERDTSTDSSRQDLSPSANDSLLSTPFELYLSGITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKRTEKNLWRRNNC
Disordered region (IsUnstruct)
**********************CKHKKCGLAILFFILEAVSVVLDIFEKSKGASLAAFLFSAFGFAMTIYVCFLERTFTAIKPQADRQLGILDIAFSVLQLIATLIHLILLVSDAKYNYNASVLFPLAFAIIAVLFVFK************************PFELYLSGITV*******************GIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCD*****KVDMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQPARTVNRQAQGGYWRKTGMPSYV***************Y*************HWLMKEYMLL**********TPWTLCVLYDFQ*********************
Disordered Region (DISOPRED)
******G*VPL**********PCKHKKCGLAILFFILEAVSVVLDIFEKSKGASLAAFLFSAFGFAMTIYVCFLERTFTAIKPQADRQLGILDIAFSVLQLIATLIHLILLVSDAKYNYNASVLFPLAFAIIAVLFV*******************************************************PGIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDG**************************VLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEY***************WTLCVL*************************
Disordered Region (DISEMBL)
MEHIETGRVPLR***********KHKKCGLAILFFILEAVSVVLDIFEKSKGASLAAFLFSAFGFAMTIYVCFLERTFTAIKPQADRQLGILDIAFSVLQLIATLIHLILLVSDAKYNYNASVLFPLAFAIIAVLFVFKER***************NDSLLSTPFELYLSGITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFK*********KTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKRTEK********
Disordered Region (DISPRO)
******************SEVPCKHKKCGLAILFFILEAVSVVLDIFEKSKGASLAAFLFSAFGFAMTIYVCFLERTFTAIKPQADRQLGILDIAFSVLQLIATLIHLILLVSDAKYNYNASVLFPLAFAIIAVLFVFKER*********************TPFELYLSGITVEGDNSE*NLRLSGQVQEGPGIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQR********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEHIETGRVPLRSVNSRDSEVPCKHKKCGLAILFFILEAVSVVLDIFEKSKGASLAAFLFSAFGFAMTIYVCFLERTFTAIKPQADRQLGILDIAFSVLQLIATLIHLILLVSDAKYNYNASVLFPLAFAIIAVLFVFKERDTSTDSSRQDLSPSANDSLLSTPFELYLSGITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKRTEKNLWRRNNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	569	2.2.26 [Sep-21-2011]
Q9FMR3	235	NAC domain-containing pro	no	no	0.202	0.489	0.320	8e-13
Q93VY3	297	NAC domain-containing pro	no	no	0.256	0.491	0.337	1e-12
Q9LDY8	317	NAC domain-containing pro	no	no	0.261	0.470	0.318	3e-11
Q9FWX2	395	NAC domain-containing pro	no	no	0.265	0.382	0.313	3e-11
Q9C932	317	NAC domain-containing pro	no	no	0.261	0.470	0.325	4e-11
Q39013	289	NAC domain-containing pro	no	no	0.267	0.525	0.341	4e-11
Q7GCL7	489	NAC domain-containing pro	no	no	0.231	0.269	0.295	1e-10
Q9SK55	275	Transcription factor JUNG	no	no	0.235	0.487	0.344	1e-10
Q7F2L3	303	NAC domain-containing pro	no	no	0.265	0.498	0.313	3e-10
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.265	0.452	0.291	7e-10

>sp|Q9FMR3|NAC90_ARATH NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 16/131 (12%)

Query: 403 FIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLA--YHSGHDKKYFF- 459
           F PT+ ELV+++L N++  RS + + R I  +++++ EPS L ++A     G  +++FF 
Sbjct: 11  FYPTEEELVSFYLRNQLEGRSDDSMHRVIPVLDVFEVEPSHLPNVAGVRCRGDAEQWFFF 70

Query: 460 -------TRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSK 512
                   R  +P+RT       GYW+ TG P  V  KD   +  K ++ ++  + PT +
Sbjct: 71  VPRQEREARGGRPSRTTG----SGYWKATGSPGPVFSKDNKMIGAKKTMVFYTGKAPTGR 126

Query: 513 PEKTHWLMKEY 523
             KT W M EY
Sbjct: 127 --KTKWKMNEY 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 11/157 (7%)

Query: 393 RMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSG 452
           ++ LPP    F PTD EL+  +L  KV+   Y    + I DI+LY ++P +L S A   G
Sbjct: 11  QLSLPPGFR-FYPTDEELLVQYLCRKVAG--YHFSLQVIGDIDLYKFDPWDLPSKALF-G 66

Query: 453 HDKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
             + YFF+   R        NR A  GYW+ TG    +   DG  V  K +L ++  + P
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIT-ADGRRVGIKKALVFYAGKAP 125

Query: 510 TSKPEKTHWLMKEYMLLKSQQPNQNDE-TPWTLCVLY 545
             K  KT+W+M EY L++  + + + +   W LC +Y
Sbjct: 126 --KGTKTNWIMHEYRLIEHSRSHGSSKLDDWVLCRIY 160

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 11/160 (6%)

Query: 393 RMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSG 452
           ++ LPP    F PTD EL+  +L  K +   +    + I +I+LY ++P  L S A   G
Sbjct: 11  QLSLPPGFR-FYPTDEELMVEYLCRKAAGHDFSL--QLIAEIDLYKFDPWVLPSKALF-G 66

Query: 453 HDKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
             + YFF+   R        NR A  GYW+ TG    ++  +G  V  K +L ++  + P
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIS-TEGRRVGIKKALVFYIGKAP 125

Query: 510 TSKPEKTHWLMKEYMLLKSQQPNQNDE-TPWTLCVLYDFQ 548
             K  KT+W+M EY L++  + N + +   W LC +Y  Q
Sbjct: 126 --KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 163

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 18/169 (10%)

Query: 396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
           +PP    F PTD ELV Y+L  KV+++  E +D FIKDI+LY  EP +L  L    GH++
Sbjct: 7   VPPGFR-FHPTDEELVDYYLRKKVASKRIE-ID-FIKDIDLYKIEPWDLQELC-KIGHEE 62

Query: 456 K---YFFTRLSQPART---VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
           +   YFF+   +   T    NR  + G+W+ TG    +  +    +  + +L ++K + P
Sbjct: 63  QSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHS-LIGMRKTLVFYKGRAP 121

Query: 510 TSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKR 558
               +K+ W+M EY  L++ +     E  W +C ++    K+R    +R
Sbjct: 122 NG--QKSDWIMHEYR-LETDENGTPQEEGWVVCRVF----KKRLAAVRR 163

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C932|NAC19_ARATH NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 11/160 (6%)

Query: 393 RMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSG 452
           ++ LPP    F PTD EL+  +L  K  A  Y+   + I +I+LY ++P  L + A   G
Sbjct: 11  QLSLPPGFR-FYPTDEELMVQYLCRK--AAGYDFSLQLIAEIDLYKFDPWVLPNKALF-G 66

Query: 453 HDKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
             + YFF+   R        NR A  GYW+ TG    ++  +G  V  K +L ++  + P
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS-TEGQRVGIKKALVFYIGKAP 125

Query: 510 TSKPEKTHWLMKEYMLLKSQQPNQNDE-TPWTLCVLYDFQ 548
             K  KT+W+M EY L++  + N + +   W LC +Y  Q
Sbjct: 126 --KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 163

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39013|NAC2_ARATH NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 21/173 (12%)

Query: 394 MVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGH 453
           + LPP    F PTD ELV ++L  K +++S       I +I+LY Y+P EL  LA + G 
Sbjct: 5   LQLPPGFR-FHPTDEELVMHYLCRKCASQSIAV--PIIAEIDLYKYDPWELPGLALY-GE 60

Query: 454 DKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPT 510
            + YFF+   R        NR A  GYW+ TG    +       V  K +L ++  + P 
Sbjct: 61  KEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGLP--KPVGIKKALVFYAGKAP- 117

Query: 511 SKPEKTHWLMKEYMLL---KSQQPNQN----DETPWTLCVLYDFQ-RKRREGP 555
            K EKT+W+M EY L    +S +  +N    D+  W LC +Y+ +    R GP
Sbjct: 118 -KGEKTNWIMHEYRLADVDRSVRKKKNSLRLDD--WVLCRIYNKKGATERRGP 167

Arabidopsis thaliana (taxid: 3702)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 388 MRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSL 447
           M + R MVLPP    F P DTEL++++L  K+  +  E     I ++++Y +EP +L + 
Sbjct: 1   MESLRDMVLPPGFG-FHPKDTELISHYLKKKIHGQKIEY--EIIPEVDIYKHEPWDLPAK 57

Query: 448 AYHSGHDKKYFF----TRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTY 503
                 D K+ F     R        NR    GYW+ TG    +       + TK +L +
Sbjct: 58  CDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAIK-MGKQTIGTKKTLVF 116

Query: 504 FKKQDPTSKPEKTHWLMKEYML 525
            + + PT +  +T W+M EY +
Sbjct: 117 HEGRPPTGR--RTEWIMHEYYI 136

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SK55|NAC42_ARATH Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 17/151 (11%)

Query: 403 FIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRL 462
           F PTD EL+ Y+L  KV  ++ +     IK I++Y Y+P +L  ++   G  + YFF   
Sbjct: 24  FHPTDEELLGYYLRRKVENKTIKL--ELIKQIDIYKYDPWDLPRVS-SVGEKEWYFFCMR 80

Query: 463 SQPARTV---NRQAQGGYWRKTGM--PSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTH 517
            +  R     NR    G+W+ TG+  P Y N    D V  K SL Y+       K  KT 
Sbjct: 81  GRKYRNSVRPNRVTGSGFWKATGIDKPVYSNL---DCVGLKKSLVYYLGS--AGKGTKTD 135

Query: 518 WLMKEYML---LKSQQPNQNDETPWTLCVLY 545
           W+M E+ L    K+  P Q  E  WTLC ++
Sbjct: 136 WMMHEFRLPSTTKTDSPAQQAEV-WTLCRIF 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F2L3|NAC48_ORYSJ NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 15/166 (9%)

Query: 388 MRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSL 447
           M   + + LPP    F PTD ELV ++L  + +          I +I+LY ++P +L  +
Sbjct: 1   MSGGQDLQLPPGFR-FHPTDEELVMHYLCRRCAGLPIAV--PIIAEIDLYKFDPWQLPRM 57

Query: 448 AYHSGHDKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYF 504
           A + G  + YFF+   R        NR A  GYW+ TG    V       VA K +L ++
Sbjct: 58  ALY-GEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGSPK--PVAIKKALVFY 114

Query: 505 KKQDPTSKPEKTHWLMKEYMLL----KSQQPNQNDETPWTLCVLYD 546
             + P  K EKT+W+M EY L      +++ N      W LC +Y+
Sbjct: 115 AGKAP--KGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYN 158

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
           LPP    F PTD EL+T++L +K+       +   I +++L   EP EL  +A   G  +
Sbjct: 22  LPPGFR-FHPTDEELITFYLASKIFHGGLSGIH--ISEVDLNRCEPWELPEMA-KMGERE 77

Query: 456 KYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYV-NDKDGDAVATKTSLTYFKKQDPTS 511
            YF++   R        NR    GYW+ TG    V +   G  V  K +L ++K + P  
Sbjct: 78  WYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAP-- 135

Query: 512 KPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRR 552
           +  KT W+M EY L          +  W +C +++    R+
Sbjct: 136 RGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKTGDRK 176

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	569
449487556	484	PREDICTED: uncharacterized protein LOC10	0.353	0.415	0.549	5e-58
449432366	536	PREDICTED: uncharacterized protein LOC10	0.360	0.382	0.538	6e-58
145338065	521	uncharacterized protein [Arabidopsis tha	0.362	0.395	0.535	8e-58
297833026	519	hypothetical protein ARALYDRAFT_477601 [	0.358	0.393	0.550	1e-56
356503123	607	PREDICTED: uncharacterized protein LOC10	0.362	0.339	0.521	1e-54
224124032	243	predicted protein [Populus trichocarpa]	0.355	0.831	0.541	5e-54
297744805	268	unnamed protein product [Vitis vinifera]	0.369	0.783	0.528	4e-53
255566034	510	hypothetical protein RCOM_1516730 [Ricin	0.332	0.370	0.531	1e-49
255563252	1603	Disease resistance protein RPS5, putativ	0.362	0.128	0.456	1e-45
242093892	525	hypothetical protein SORBIDRAFT_10g02704	0.356	0.386	0.469	2e-44

>gi|449487556|ref|XP_004157685.1| PREDICTED: uncharacterized protein LOC101226515 [Cucumis sativus]

 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 149/204 (73%), Gaps = 3/204 (1%)

Query: 191 EGPGIEKFRIIGEAKPGGKLL--GYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVT 248
           EGP IE F+I+GEA PG +LL  GYP  GT+L  FQW+  LED TR  IEGAT PEYVV 
Sbjct: 270 EGPSIENFQIVGEATPGSRLLACGYPTRGTSLCIFQWVWHLEDGTRQYIEGATNPEYVVG 329

Query: 249 ADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLL 308
           ADD++KLIA+E   +DD+GH+G LV +FAN+ +KI+CDPDMQ ++D ++S+GQA F VLL
Sbjct: 330 ADDVDKLIAVECIPMDDKGHQGDLVKLFANDQNKIRCDPDMQLEIDTYLSKGQATFNVLL 389

Query: 309 LINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDG 368
           LI+SSEN WEPA++S  +S + +K+ +T+ V+        + ++IP G+S QF+L   DG
Sbjct: 390 LIDSSEN-WEPASISLRRSGYQIKMGNTEAVVIAEKYSRELSLKIPSGISTQFVLTCSDG 448

Query: 369 ESHYFITNNDRMRDTLVLTMRTFR 392
            S  F T + RMRDTLVLTMR F+
Sbjct: 449 SSLPFNTYDVRMRDTLVLTMRMFQ 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432366|ref|XP_004133970.1| PREDICTED: uncharacterized protein LOC101207305 [Cucumis sativus]

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 150/208 (72%), Gaps = 3/208 (1%)

Query: 191 EGPGIEKFRIIGEAKPGGKLL--GYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVT 248
           EGP IE F+I+GEA PG +LL  GYP  GT+L  FQW+  LED TR  IEGAT PEYVV 
Sbjct: 322 EGPSIENFQIVGEATPGSRLLACGYPTRGTSLCIFQWVWHLEDGTRQYIEGATNPEYVVG 381

Query: 249 ADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLL 308
           ADD++KLIA+E   +DD+GH+G LV +FAN+ +KI+CDPDMQ ++D ++S+GQA F VLL
Sbjct: 382 ADDVDKLIAVECIPMDDKGHQGDLVKLFANDQNKIRCDPDMQLEIDTYLSKGQATFNVLL 441

Query: 309 LINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLDG 368
           LI+SSEN WEPA++S  +S + +K+ +T+ V+        + ++IP G+S QF+L   DG
Sbjct: 442 LIDSSEN-WEPASISLRRSGYQIKMGNTEAVVIAEKYSRELSLKIPSGISTQFVLTCSDG 500

Query: 369 ESHYFITNNDRMRDTLVLTMRTFRRMVL 396
            S  F T + RMRDTLVLTMR F+   +
Sbjct: 501 SSLPFNTYDVRMRDTLVLTMRMFQSKAM 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338065|ref|NP_187006.2| uncharacterized protein [Arabidopsis thaliana] gi|332640436|gb|AEE73957.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 152/209 (72%), Gaps = 3/209 (1%)

Query: 190 QEGPGIEKFRIIGEAKPGGKLLG--YPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVV 247
           +EGPGI+ F+IIG+A PG K+LG  +PV GTTL  FQW+R LED TR  IEGAT PEY+V
Sbjct: 306 EEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHPEYIV 365

Query: 248 TADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVL 307
           TADD++KLIA+E   +DD+G +G+LV +FAN+ +KI+CD +MQ+++D +ISRGQA+F V 
Sbjct: 366 TADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQTEIDTYISRGQASFNVQ 425

Query: 308 LLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLD 367
           LL++SSE +WEPAT+   +S + +K N+T+ V+        ++I +P G S QF+L   D
Sbjct: 426 LLMDSSE-SWEPATVVLKRSSYQIKTNTTEAVVISEKYSKELQIRVPSGESTQFVLISYD 484

Query: 368 GESHYFITNNDRMRDTLVLTMRTFRRMVL 396
           G SH   T N RMRDTLVLTMR  +   L
Sbjct: 485 GSSHPISTLNVRMRDTLVLTMRMLQSKAL 513

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833026|ref|XP_002884395.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] gi|297330235|gb|EFH60654.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata]

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/209 (55%), Positives = 154/209 (73%), Gaps = 5/209 (2%)

Query: 190 QEGPGIEKFRIIGEAKPGGKLLG--YPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVV 247
           +EGPGI+ F+IIG+A PG K+LG  +PV GTTL  FQW+R LED TR  IEGAT PEYVV
Sbjct: 306 EEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHPEYVV 365

Query: 248 TADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVL 307
           TADD++KLIA+E   +DD+G +G+LV +FAN+ +KI+CD +MQ+++D +ISRGQA+F V 
Sbjct: 366 TADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQAEIDTYISRGQASFNVQ 425

Query: 308 LLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLD 367
           LL++SSE +WE AT+   +S + +K N+T+ VISE      ++I++P G S QF+L   D
Sbjct: 426 LLMDSSE-SWETATVILKRSSYQIKTNTTE-VISE-KYSKELQIKVPCGFSTQFVLISYD 482

Query: 368 GESHYFITNNDRMRDTLVLTMRTFRRMVL 396
           G SH   T N RMRDTLVLTMR  +   L
Sbjct: 483 GSSHPISTLNVRMRDTLVLTMRMLQSKAL 511

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503123|ref|XP_003520361.1| PREDICTED: uncharacterized protein LOC100813936 [Glycine max]

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/209 (52%), Positives = 148/209 (70%), Gaps = 3/209 (1%)

Query: 190 QEGPGIEKFRIIGEAKPGGKLLG--YPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVV 247
           ++GPGIE F++ G+A PG KLLG  YPV GT+L  FQW+R LED TR  IEGAT PEYVV
Sbjct: 392 EDGPGIENFQVSGDAIPGEKLLGCGYPVRGTSLCMFQWVRHLEDGTRQYIEGATNPEYVV 451

Query: 248 TADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVL 307
           TADD++KLIA+E   +DD+G +G+LV +FAN+ +KI CD +M+ ++  ++S+G+A F VL
Sbjct: 452 TADDVDKLIAVECIPMDDKGRQGELVKLFANDQNKITCDSEMKHEIGTNLSKGEATFSVL 511

Query: 308 LLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLD 367
           LL +SSEN WE ATL   +S + +KIN T+  + +      + I++P GLS QF+L   +
Sbjct: 512 LLRDSSEN-WEQATLFLRRSGYQIKINGTEATVVDEKFSKELSIKVPCGLSAQFVLTSSN 570

Query: 368 GESHYFITNNDRMRDTLVLTMRTFRRMVL 396
           G SH   T + RMRDTLVLTMR F+   L
Sbjct: 571 GSSHPLSTYSVRMRDTLVLTMRLFQSKAL 599

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124032|ref|XP_002319228.1| predicted protein [Populus trichocarpa] gi|222857604|gb|EEE95151.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 112/207 (54%), Positives = 147/207 (71%), Gaps = 5/207 (2%)

Query: 193 PGIEKFRIIGEAKPGGKLLG--YPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTAD 250
           PGIE F+IIG+A PG KLLG  +PV GT+L  FQW+  LED TR  IEGAT PEY+VTAD
Sbjct: 31  PGIEGFQIIGDATPGEKLLGCGFPVRGTSLCMFQWVHHLEDGTRQYIEGATNPEYIVTAD 90

Query: 251 DINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLI 310
           D++KLIA+E   +DD+G +G+LV +FAN+ +KIKCDPDMQ ++D +IS+G+A F VLLL 
Sbjct: 91  DVDKLIAVECIPMDDQGRQGELVRLFANDQNKIKCDPDMQREIDTYISKGEATFSVLLLT 150

Query: 311 NSSENTWEPATLSFTQSRFHVKINS-TDVVISEGDLFNIIEIEIPIGLSRQFILRRLDGE 369
           +SSEN W+  TL   +S + +K +   +VVI+E      + I+IP GLS QF+L   +G 
Sbjct: 151 DSSEN-WDSTTLVLRRSGYQIKSDGRGNVVIAE-KFSKDLSIKIPAGLSTQFVLTCSNGS 208

Query: 370 SHYFITNNDRMRDTLVLTMRTFRRMVL 396
           SH   T + RMRDTLVL MR F+   L
Sbjct: 209 SHPLSTYDVRMRDTLVLAMRMFQSKAL 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744805|emb|CBI38073.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 113/214 (52%), Positives = 146/214 (68%), Gaps = 4/214 (1%)

Query: 186 SGQVQEGPGIEKFRIIGEAKPGGKLL--GYPVNGTTLSTFQWIRFLEDDTRHSIEGATEP 243
           S   +E PGI+ F+IIG+AKPG  LL  G+PV GT+L  FQWIR L+D T   IEGAT P
Sbjct: 48  SSDSEEHPGIDGFQIIGDAKPGCGLLACGFPVRGTSLCIFQWIRHLQDGTLQYIEGATNP 107

Query: 244 EYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAA 303
           EYVVTADD++KLI++E   +DD G +G+LV  FAN+ +KI CDP+MQ  +D HIS+G A 
Sbjct: 108 EYVVTADDVDKLISVECVPMDDNGRQGELVKRFANDQNKITCDPEMQLMIDSHISKGHAM 167

Query: 304 FRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFIL 363
           F VLLL++S +N WE ATL   +S + VK+NST+      +    + I+IP GLS QF+L
Sbjct: 168 FSVLLLMDSLDN-WEAATLILRRSSYQVKVNSTETSQIAENFSKHLSIKIPSGLSAQFVL 226

Query: 364 RRLDGESHYFITNND-RMRDTLVLTMRTFRRMVL 396
              DG S+ F   ND  MRDT+VLTMR F+   L
Sbjct: 227 TCSDGSSYPFNAYNDVGMRDTIVLTMRMFQSRAL 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566034|ref|XP_002524005.1| hypothetical protein RCOM_1516730 [Ricinus communis] gi|223536732|gb|EEF38373.1| hypothetical protein RCOM_1516730 [Ricinus communis]

 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 134/192 (69%), Gaps = 3/192 (1%)

Query: 190 QEGPGIEKFRIIGEAKPGGKLLG--YPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVV 247
           +EGPGIE F+IIG+A PGGKLLG  YPV GT+L  FQW+R LED TR  IEGAT PEYVV
Sbjct: 276 EEGPGIEGFQIIGDAVPGGKLLGCGYPVRGTSLCMFQWVRHLEDGTRQYIEGATNPEYVV 335

Query: 248 TADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVL 307
           TADD++KLIA+E   +DD+G +G+LV  FAN+ +KIKCDPDMQ  +DM+IS+G+A F + 
Sbjct: 336 TADDVDKLIAVECIPMDDQGRQGELVKRFANDQNKIKCDPDMQHAIDMYISKGEATFSIQ 395

Query: 308 LLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFILRRLD 367
           LL ++S+  W+ +TL   +S + +K  S D+ +        + I+IP GLS QF+L    
Sbjct: 396 LLTDASDK-WKSSTLILRRSGYQIKTISDDIELIAEKYSKNLSIKIPSGLSTQFVLACSS 454

Query: 368 GESHYFITNNDR 379
           G SH   T N R
Sbjct: 455 GSSHPLNTYNVR 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 135/219 (61%), Gaps = 13/219 (5%)

Query: 173  TVEGDNSENNLRLSGQVQ----------EGPGIEKFRIIGEAKPGGKLLG--YPVNGTTL 220
            T   D S  N R  G             E PGIE  +IIG+A PG +L+G  YPV GT+L
Sbjct: 1386 TSSSDKSNANAREEGMAMHLRHPTSTHVEEPGIEGIQIIGDAIPGERLIGCGYPVGGTSL 1445

Query: 221  STFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEH 280
              FQW+R LED ++  I GATEP YVVTADD++KLI++E   +DD+GH+GKL+ +FAN+ 
Sbjct: 1446 CMFQWVRHLEDGSKQYIVGATEPHYVVTADDVDKLISVECIPLDDQGHQGKLMRLFANDQ 1505

Query: 281  SKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVI 340
             KI+CD  MQ K+D + S  +A F VLL+++S +N WEPA L   Q+ + +K  S + V+
Sbjct: 1506 KKIQCDAGMQRKIDTYSSICEATFGVLLMMDSFDN-WEPANLVLRQAGYQIKGKSEENVV 1564

Query: 341  SEGDLFNIIEIEIPIGLSRQFILRRLDGESHYFITNNDR 379
                    + I+IP GLS+QFIL   DG SH   T + R
Sbjct: 1565 IAEKFSKELLIKIPYGLSKQFILECFDGSSHTLSTYDSR 1603

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093892|ref|XP_002437436.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] gi|241915659|gb|EER88803.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor]

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/213 (46%), Positives = 135/213 (63%), Gaps = 10/213 (4%)

Query: 193 PGIEKFRIIGEAKPGGKL--LGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTAD 250
           PGIE F+I GE +PG +L   G+P NGTTL  FQW+R LE+ TR SIEGAT  +YVVTAD
Sbjct: 306 PGIEGFQIAGEPRPGFQLTACGFPTNGTTLCNFQWVRHLENGTRQSIEGATMYDYVVTAD 365

Query: 251 DINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLI 310
           D+  L+A++ T +DD G +G LVT FAN  +KI CDP+MQS +D ++S G+A F VL+L 
Sbjct: 366 DVGTLLAVDCTPMDDNGRQGDLVTEFANNGNKITCDPEMQSHIDAYVSTGRAEFEVLVLA 425

Query: 311 NSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGLSRQFIL----RRL 366
            S E  WE ATL  T+  + +K   T  VI +      ++++IP G + QF+L      L
Sbjct: 426 YSPEE-WELATLVLTRPNYQIKFTKTGEVIIDEKYSQSLQMKIPNGRTTQFVLVTAGATL 484

Query: 367 DGESHYFITNND---RMRDTLVLTMRTFRRMVL 396
              +H    N D   R+RD +VL MRTF++  L
Sbjct: 485 PFNTHGISENEDYNVRLRDLIVLVMRTFQKKAL 517

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	569
TAIR|locus:2096434	521	AT3G03560 [Arabidopsis thalian	0.384	0.420	0.515	1.4e-55
TAIR|locus:2154468	729	AT5G23490 "AT5G23490" [Arabido	0.421	0.329	0.367	4.8e-31
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.272	0.411	0.339	4e-14
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.251	0.455	0.335	4.2e-14
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.270	0.421	0.333	1e-13
TAIR|locus:2155046	292	NAC105 "NAC domain containing	0.277	0.541	0.311	1.1e-13
TAIR|locus:2176372	235	NAC090 "NAC domain containing	0.209	0.506	0.330	1.7e-13
TAIR|locus:2089764	246	NAC057 "NAC domain containing	0.216	0.5	0.362	2.1e-13
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.279	0.528	0.325	2.8e-13
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.281	0.405	0.310	2.9e-13

TAIR|locus:2096434 AT3G03560 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 115/223 (51%), Positives = 156/223 (69%)

Query:   177 DNSENNLRLSGQV-QEGPGIEKFRIIGEAKPGGKLLG--YPVNGTTLSTFQWIRFLEDDT 233
             D    N   +  V +EGPGI+ F+IIG+A PG K+LG  +PV GTTL  FQW+R LED T
Sbjct:   292 DAYNGNEEFASHVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGT 351

Query:   234 RHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKV 293
             R  IEGAT PEY+VTADD++KLIA+E   +DD+G +G+LV +FAN+ +KI+CD +MQ+++
Sbjct:   352 RQYIEGATHPEYIVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQTEI 411

Query:   294 DMHISRGQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEI 353
             D +ISRGQA+F V LL++SSE+ WEPAT+   +S + +K N+T+ V+        ++I +
Sbjct:   412 DTYISRGQASFNVQLLMDSSES-WEPATVVLKRSSYQIKTNTTEAVVISEKYSKELQIRV 470

Query:   354 PIGLSRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFRRMVL 396
             P G S QF+L   DG SH   T N RMRDTLVLTMR  +   L
Sbjct:   471 PSGESTQFVLISYDGSSHPISTLNVRMRDTLVLTMRMLQSKAL 513

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2154468 AT5G23490 "AT5G23490" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 4.8e-31, P = 4.8e-31
 Identities = 97/264 (36%), Positives = 146/264 (55%)

Query:   141 RDTSTDSSRQDLSPSANDSLLSTPFELYLSGITVEGDNSENNLRLSGQVQEGPGIEKFRI 200
             ++ S  S+  D S S+N  LLS  FE   S  +  GD  ++ L         PGIE  +I
Sbjct:   468 QNPSYGSAFDDPS-SSNSPLLSPVFEEPSSSFSEGGD--DDPL---------PGIEDLQI 515

Query:   201 IGEAKPGGKL--LGYPVNGTTLSTFQWIRFLEDDTRHSIEGATEPEYVVTADDINKLIAL 258
              GE  PG +L   GY +NGTT   F+W+  LED + + I+GA +P Y+VTADD++  +A+
Sbjct:   516 SGEPYPGHELQACGYSINGTTSCNFEWVCHLEDGSVNYIDGAKQPNYLVTADDVDLYLAI 575

Query:   259 EHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWE 318
             E   +DD   +G+LV VFAN++ KI C PDMQS ++  +  G A+++V L +   +  WE
Sbjct:   576 EVQPLDDRNRKGELVKVFANDNRKIACHPDMQSNIEKTLHTGHASYKVSLAVGFVD-IWE 634

Query:   319 PATLSFTQSRFHVKINSTDVVISEGDLFNI-IEIEIPIGLSRQFILRRLDGESHYFITNN 377
              ATLS  +  + +K  S D+ I+E   F+    + IP G   + ++   DG  H    +N
Sbjct:   635 AATLSIKREGYSIKCIS-DLTIAEK--FSASTTVTIPFGQPAELVIIGSDGSEHSLRADN 691

Query:   378 ---DRM--RDTLVLTMRTFRRMVL 396
                D +  RD +VLT+R F +  L
Sbjct:   692 GSPDLIGSRDEIVLTLRLFIKRAL 715

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 58/171 (33%), Positives = 89/171 (52%)

Query:   396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
             +PP    F PTD ELV Y+L  KV+++  + LD  I+DI+LY  EP +L   +   G+++
Sbjct:    10 VPPGFR-FHPTDEELVGYYLRKKVASQKID-LD-VIRDIDLYRIEPWDLQE-SCRIGYEE 65

Query:   456 K---YFFTRLSQ--PART-VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
             +   YFF+   +  P  T  NR    G+W+ TG    V DK    +  + +L ++K + P
Sbjct:    66 RNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKS-KLIGMRKTLVFYKGRAP 124

Query:   510 TSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKRTE 560
                 +KT W+M EY L +S +     E  W +C    F++K   G  K TE
Sbjct:   125 NG--QKTDWIMHEYRL-ESDENAPPQEEGWVVCRA--FKKKPMTGQAKNTE 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 52/155 (33%), Positives = 85/155 (54%)

Query:   396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
             LPP    F PTD EL+T++L  KVS   +    + + D++L   EP +L + A   G  +
Sbjct:     5 LPPGFR-FHPTDEELITHYLCRKVSDIGFT--GKAVVDVDLNKCEPWDLPAKA-SMGEKE 60

Query:   456 KYFFTRLSQPART---VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSK 512
              YFF++  +   T    NR  + GYW+ TG    +  + G  V  K +L ++K + P  K
Sbjct:    61 WYFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIY-RSGVLVGMKKTLVFYKGRAP--K 117

Query:   513 PEKTHWLMKEYMLLKSQQP-NQNDETPWTLCVLYD 546
              EK++W+M EY L +S+QP N  ++  W +C +++
Sbjct:   118 GEKSNWVMHEYRL-ESKQPFNPTNKEEWVVCRVFE 151

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 57/171 (33%), Positives = 88/171 (51%)

Query:   396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
             +PP    F PTD ELV Y+L  K++++  + LD  I+DI+LY  EP +L       G+++
Sbjct:     9 VPPGFR-FHPTDEELVGYYLRKKIASQKID-LD-VIRDIDLYRIEPWDLQEQC-RIGYEE 64

Query:   456 K---YFFTRLSQ--PART-VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
             +   YFF+   +  P  T  NR    G+W+ TG    V DK    +  + +L ++K + P
Sbjct:    65 QNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKT-KLIGMRKTLVFYKGRAP 123

Query:   510 TSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKRTE 560
               K  K+ W+M EY L +S +     E  W +C  +   +KR  G  K TE
Sbjct:   124 NGK--KSDWIMHEYRL-ESDENAPPQEEGWVVCRAF---KKRATGQAKNTE 168

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2155046 NAC105 "NAC domain containing protein 105" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 56/180 (31%), Positives = 93/180 (51%)

Query:   396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
             +PP    F PTD ELV Y+L  K++++  + LD  I++I+LY  EP +L       G+++
Sbjct:    12 IPPGFR-FHPTDEELVGYYLKKKIASQRID-LD-VIREIDLYKIEPWDLQERC-RIGYEE 67

Query:   456 K---YFFTRLSQ--PART-VNRQAQGGYWRKTGMPS--YVNDKDGDAVATKTSLTYFKKQ 507
             +   YFF+   +  P  T  NR    G+W+ TG     Y+N K    +  + +L +++ +
Sbjct:    68 QTEWYFFSHRDKKYPTGTRTNRATVAGFWKATGRDKAVYLNSK---LIGMRKTLVFYRGR 124

Query:   508 DPTSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKRTEKNLWRRN 567
              P    +K+ W++ EY  L+S Q +   E  W +C  +   +KR   P KR  + LW  N
Sbjct:   125 APNG--QKSDWIIHEYYSLESHQNSPPQEEGWVVCRAF---KKRTTIPTKR--RQLWDPN 177

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2176372 NAC090 "NAC domain containing protein 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 42/127 (33%), Positives = 70/127 (55%)

Query:   403 FIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLA--YHSGHDKKYFF- 459
             F PT+ ELV+++L N++  RS + + R I  +++++ EPS L ++A     G  +++FF 
Sbjct:    11 FYPTEEELVSFYLRNQLEGRSDDSMHRVIPVLDVFEVEPSHLPNVAGVRCRGDAEQWFFF 70

Query:   460 -TRLSQPAR--TVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKT 516
               R  + AR    +R    GYW+ TG P  V  KD   +  K ++ ++  + PT +  KT
Sbjct:    71 VPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKDNKMIGAKKTMVFYTGKAPTGR--KT 128

Query:   517 HWLMKEY 523
              W M EY
Sbjct:   129 KWKMNEY 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2089764 NAC057 "NAC domain containing protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 49/135 (36%), Positives = 71/135 (52%)

Query:   396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
             LPP    F PTD ELV Y+L  K++ +  E LD  I +++LY  EP +L+  ++    D 
Sbjct:     6 LPPGFR-FHPTDEELVNYYLKRKINGQEIE-LD-IIPEVDLYKCEPWDLAEKSFLPSRDP 62

Query:   456 K-YFF----TRLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPT 510
             + YFF     +     RT NR  +GGYW+ TG    V  +   A+  K +L Y+K + P 
Sbjct:    63 EWYFFGPRDRKYPNGFRT-NRATRGGYWKSTGKDRRVTSQSR-AIGMKKTLVYYKGRAPQ 120

Query:   511 SKPEKTHWLMKEYML 525
                 +T W+M EY L
Sbjct:   121 GI--RTDWVMHEYRL 133

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 57/175 (32%), Positives = 96/175 (54%)

Query:   394 MVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGH 453
             M LPP    F PTD ELV Y+L  KV+ ++ E L+  I +++LY  EP +L   ++  G+
Sbjct:     4 MSLPPGFR-FHPTDEELVAYYLDRKVNGQAIE-LE-IIPEVDLYKCEPWDLPEKSFLPGN 60

Query:   454 DKKYFF--TRLSQ-P--ARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQD 508
             D +++F  TR  + P  +RT NR  + GYW+ TG    V  K    +  K +L Y++ + 
Sbjct:    61 DMEWYFYSTRDKKYPNGSRT-NRATRAGYWKATGKDRTVESKKMK-MGMKKTLVYYRGRA 118

Query:   509 PTSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLY--DFQRKRREGPFKRTEK 561
             P     +T+W+M EY L  +  P+ + +  + LC ++  + Q  +R+G  +  E+
Sbjct:   119 PHGL--RTNWVMHEYRL--THAPSSSLKESYALCRVFKKNIQIPKRKGEEEEAEE 169

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 55/177 (31%), Positives = 91/177 (51%)

Query:   396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
             +PP    F PTD ELV Y+L  KV+++  E +D FIKDI+LY  EP +L  L    GH++
Sbjct:     7 VPPGFR-FHPTDEELVDYYLRKKVASKRIE-ID-FIKDIDLYKIEPWDLQELC-KIGHEE 62

Query:   456 K---YFFTRLSQ--PART-VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
             +   YFF+   +  P  T  NR  + G+W+ TG    +  +    +  + +L ++K + P
Sbjct:    63 QSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHS-LIGMRKTLVFYKGRAP 121

Query:   510 TSKPEKTHWLMKEYMLLKSQQPNQNDETPWTLCVLYD--FQRKRREGPFKRTEKNLW 564
                 +K+ W+M EY L ++ +     E  W +C ++       RR G +  +  + W
Sbjct:   122 NG--QKSDWIMHEYRL-ETDENGTPQEEGWVVCRVFKKRLAAVRRMGDYDSSPSH-W 174

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	569
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	5e-25

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =   99 bits (250), Expect = 5e-25
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 403 FIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRL 462
           F PTD ELV Y+L  KV  +    L   I ++++Y +EP +L       G  + YFF+  
Sbjct: 7   FHPTDEELVVYYLKRKVLGKP-LPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWYFFSPR 65

Query: 463 SQPART---VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWL 519
            +        NR    GYW+ TG    V  K G+ V  K +L ++K + P  K EKT W+
Sbjct: 66  DRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAP--KGEKTDWV 123

Query: 520 MKEY 523
           M EY
Sbjct: 124 MHEY 127

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	569
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=3.5e-37  Score=275.88  Aligned_cols=126  Identities=33%  Similarity=0.625  Sum_probs=93.9

Q ss_pred             CCCcccccCCChHHHHHHHHHHHHcCCCCCccCCcceeccCCCCCCCccchhhcccCCCeEEEEEecCC---CCCccccc
Q 008335          396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQ---PARTVNRQ  472 (569)
Q Consensus       396 LppgvfRF~PTDEELV~~YLrpKI~G~plP~~~~vI~evDVY~~ePWdLP~~~~~~ge~eWYFFSpR~r---kGrR~nRt  472 (569)
                      |||| |||+|||+|||.+||++|+.|++++ ..++|+++|||++|||+|+.... .++++||||+++.+   +++|.+|+
T Consensus         1 LP~G-~rF~PtD~ELi~~yL~~k~~g~~~~-~~~~i~~~Diy~~~P~~L~~~~~-~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPG-FRFRPTDEELINHYLRPKILGEPLP-CEDVIHDVDIYSAHPWELPAKFK-GGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TT-EEE---HHHHHHCTHHHHHTT-HHC-S-CHSEE--GGGS-GGGCHHHSS-S-SSEEEEEEE----------S-EE
T ss_pred             CCCc-eEecCChHHHHHHHHHHHhcCCCCC-cccceeecccCccChHHhhhhcc-CCCceEEEEEecccccCCccccccc
Confidence            7999 9999999999999999999999876 35789999999999999995322 25569999999875   36788999


Q ss_pred             cccceEEecCCCeeeeCCCCCEEEEEEEEEEEeccCCCCCCCccCeEEEEEEeC
Q 008335          473 AQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEYMLL  526 (569)
Q Consensus       473 tggGyWKatGk~K~I~d~~G~iVG~KKtLvFyegr~P~gkg~KTgWVMhEYrL~  526 (569)
                      +++|+||++|+.+.|.+.+|.++|+|++|+||.++.+  ++.+|+|+||||+|.
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~--~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSP--NGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTT--S-EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCC--CCCcCCeEEEEEEeC
Confidence            9999999999999999878899999999999987655  578999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	569
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		6e-12
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		6e-12
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-09

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 393 RMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSG 452
           ++ LPP    F PTD EL+  +L  K  A  Y+   + I +I+LY ++P  L + A   G
Sbjct: 14  QLSLPPGFR-FYPTDEELMVQYLCRK--AAGYDFSLQLIAEIDLYKFDPWVLPNKALF-G 69
Query: 453 HDKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
             + YFF+   R        NR A  GYW+ TG    ++  +G  V  K +L ++  + P
Sbjct: 70  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAP 128
Query: 510 TSKPEKTHWLMKEYMLLKSQQPNQNDE-TPWTLCVLYDFQ 548
             K  KT+W+M EY L++  + N + +   W LC +Y  Q
Sbjct: 129 --KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 393 RMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSG 452
           ++ LPP    F PTD EL+  +L  K  A  Y+   + I +I+LY ++P  L + A   G
Sbjct: 17  QLSLPPGFR-FYPTDEELMVQYLCRK--AAGYDFSLQLIAEIDLYKFDPWVLPNKALF-G 72
Query: 453 HDKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
             + YFF+   R        NR A  GYW+ TG    ++  +G  V  K +L ++  + P
Sbjct: 73  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAP 131
Query: 510 TSKPEKTHWLMKEYMLLKSQQPNQNDE-TPWTLCVLYDFQ 548
             K  KT+W+M EY L++  + N + +   W LC +Y  Q
Sbjct: 132 --KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
           LPP    F PTD ELV ++L  K + +        I +++LY ++P +L   A   G  +
Sbjct: 15  LPPGFR-FHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYKFDPWDLPERALF-GARE 70
Query: 456 KYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSK 512
            YFFT   R        NR A  GYW+ TG    V  + G  +  K +L ++  + P  +
Sbjct: 71  WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAP--R 127
Query: 513 PEKTHWLMKEYMLLKSQQPNQNDETP------WTLCVLYD 546
             KT W+M EY L  + +     +        W LC LY+
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	569
4dix_A	230	Plectin-related protein; PH domain, IG domain, mal	2e-30
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-24
1ut7_A	171	No apical meristem protein; transcription regulati	5e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Length = 230

 Score =  118 bits (296), Expect = 2e-30
 Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 17/210 (8%)

Query: 191 EGPGIEKFRIIGEAKPGGKL----LGYPVNGTTLSTFQWIRF-LEDDTRHSIEGATEPEY 245
           E      + I G    G  L            +  T QW R   +   +  I GAT+  Y
Sbjct: 8   EENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVY 67

Query: 246 VVTADDINKLIALEHTTIDDEGHEGKLVTVFANEHSKIKCDPDMQSKVDMHISRGQAAFR 305
                D+ +++  +        ++G  +++      KI     + S V+  + +    F 
Sbjct: 68  APEPFDVGRVLHADII------YDGHSLSLSTV--GKIDPAAGLGSYVEALVRKHDVDFN 119

Query: 306 VLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLFNIIEIEIPIGL----SRQF 361
           V++   S E+    +   F   +  +K+     VI++    + +++    G     ++  
Sbjct: 120 VVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLCGVRGGGNAAAQAL 179

Query: 362 ILRRLDGESHYFITNNDRMRDTLVLTMRTF 391
             +   G S      ++R R+  ++  R F
Sbjct: 180 YWQAKKGVSFVIAFESERERNAAIMLARRF 209

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 99.3 bits (248), Expect = 2e-24
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 403 FIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRL 462
           F PTD ELV ++L  K + +        I +++LY ++P +L   A     +  YFFT  
Sbjct: 21  FHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYKFDPWDLPERALFGARE-WYFFTPR 77

Query: 463 SQPART---VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWL 519
            +        NR A  GYW+ TG    V  + G  +  K +L ++  + P  +  KT W+
Sbjct: 78  DRKYPNGSRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAP--RGVKTDWI 134

Query: 520 MKEYMLL------KSQQPNQNDETPWTLCVLYDFQRKRREGP 555
           M EY L          +        W LC LY    K+ E  
Sbjct: 135 MHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY---NKKNEWE 173

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 98.1 bits (245), Expect = 5e-24
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 403 FIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRL 462
           F PTD EL+  +L  K +   +    + I +I+LY ++P  L + A     +  YFF+  
Sbjct: 23  FYPTDEELMVQYLCRKAAGYDFSL--QLIAEIDLYKFDPWVLPNKALFGEKE-WYFFSPR 79

Query: 463 SQPART---VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWL 519
            +        NR A  GYW+ TG    ++ + G  V  K +L ++  + P  K  KT+W+
Sbjct: 80  DRKYPNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAP--KGTKTNWI 136

Query: 520 MKEYMLL-KSQQPNQNDETPWTLCVLYDFQRKRREGP 555
           M EY L+  S++        W LC +Y   +K+    
Sbjct: 137 MHEYRLIEPSRRNGSTKLDDWVLCRIY---KKQSSAQ 170

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 71/470 (15%), Positives = 131/470 (27%), Gaps = 140/470 (29%)

Query: 2   EHIETGRVPLRSVNSRDSEVPC--KHKKCGLAILFFILEAV--SVVLDIFE---K----S 50
           +H    ++ + S+ +    +     ++ C L     +L  V  +   + F    K    +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILLTT 272

Query: 51  KGASLAAFLFSAFGFAMTIYVC--FLERTFTAIKPQADRQLG-ILDIAFSVLQLIATLIH 107
           +   +  FL      A T ++       T T    +    L   LD     L       +
Sbjct: 273 RFKQVTDFL----SAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 108 LILLVSDAKYNYNASVLFPLAFAIIAVLFVFKERDTSTDSSRQDLSPSANDSLLSTPFEL 167
                             P   +IIA       RD     +  D     N   L+T  E 
Sbjct: 327 ------------------PRRLSIIAESI----RD---GLATWDNWKHVNCDKLTTIIES 361

Query: 168 YLSGITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPGGKLLGYPVNGTTLSTFQWIR 227
            L+ +           R           ++  +              +    LS   W  
Sbjct: 362 SLNVL------EPAEYR--------KMFDRLSVFPP--------SAHIPTILLSLI-WFD 398

Query: 228 FLEDDTRHSIEGATE--------PEYVVTADDINKLIALEHTTIDDEGHEGKLVTVFANE 279
            ++ D    +    +         E  ++   I  L        +   H   +V  + N 
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHR-SIVDHY-NI 455

Query: 280 HSKIKCDPDMQSKVDM--------HISRGQAA-----FRVLLLINSSENTWEPATLSFTQ 326
                 D  +   +D         H+   +       FR++ L              F +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-----------DFRFLE 504

Query: 327 SRFHVKINSTDVVI-SEGDLFNIIEIEIPIGLSRQFILRRLDGESHY--FITNNDRMRDT 383
                KI        + G + N               L++L     Y  +I +ND   + 
Sbjct: 505 Q----KIRHDSTAWNASGSILNT--------------LQQLK---FYKPYICDNDPKYER 543

Query: 384 LVLTMRTFRRMVLPPTVAAFIPTD-TELVTYHLMNKVSA---RSYEQLDR 429
           LV  +  F    LP      I +  T+L+   LM +  A    +++Q+ R
Sbjct: 544 LVNAILDF----LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 37/226 (16%), Positives = 67/226 (29%), Gaps = 62/226 (27%)

Query: 373 FITNNDRMRDTL-----VLTMRTFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQL 427
           F+ N D  +D       +L+      +++          D    T  L   + ++  E +
Sbjct: 29  FVDNFD-CKDVQDMPKSILSKEEIDHIIMSK--------DAVSGTLRLFWTLLSKQEEMV 79

Query: 428 DRFIKDIELYDYE------------PSELSSLAYHSGHDK---------KYFFTRLSQPA 466
            +F++++   +Y+            PS + +  Y    D+         KY  +RL QP 
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRL-QPY 137

Query: 467 RTVNRQA-----QGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSK---PEKTHW 518
             + RQA             G+        G   + KT +          +     K  W
Sbjct: 138 LKL-RQALLELRPAKNVLIDGVL-------G---SGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 519 L-MKEYMLLKSQQPNQNDETPWTLCVLYDFQRKRREGPFKRTEKNL 563
           L +K         P    E    L    D     R       +  +
Sbjct: 187 LNLKNC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	569
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0
4dix_A	230	Plectin-related protein; PH domain, IG domain, mal	99.93

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=3.7e-46  Score=353.18  Aligned_cols=148  Identities=32%  Similarity=0.623  Sum_probs=128.3

Q ss_pred             cCCCCcccccCCChHHHHHHHHHHHHcCCCCCccCCcceeccCCCCCCCccchhhcccCCCeEEEEEecCC---CCCccc
Q 008335          394 MVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQ---PARTVN  470 (569)
Q Consensus       394 maLppgvfRF~PTDEELV~~YLrpKI~G~plP~~~~vI~evDVY~~ePWdLP~~~~~~ge~eWYFFSpR~r---kGrR~n  470 (569)
                      ..|||| |||+|||||||.|||++|+.|.++|  .++|+++|||++|||+||+.+.. ++.+||||+++.+   +|.|++
T Consensus        13 ~~LPpG-fRF~PTDeELV~~YL~~K~~g~~~~--~~~I~evDvy~~~Pw~Lp~~~~~-g~~ewYFFs~r~~ky~~g~R~n   88 (174)
T 3ulx_A           13 LNLPPG-FRFHPTDDELVEHYLCRKAAGQRLP--VPIIAEVDLYKFDPWDLPERALF-GAREWYFFTPRDRKYPNGSRPN   88 (174)
T ss_dssp             TTCCTT-CCCCCCHHHHHHHTHHHHHHTCCCS--SSCCEECCGGGSCGGGSGGGCSS-CSSEEEEEEECCC-----CCSC
T ss_pred             cCCCCc-ceeCCCHHHHHHHHHHHHhcCCCCC--cCeeeecccccCCchhhhhhhcc-CCceEEEEeccccccCCCCCce
Confidence            469999 9999999999999999999999887  68999999999999999998653 5679999999876   468899


Q ss_pred             cccccceEEecCCCeeeeCCCCCEEEEEEEEEEEeccCCCCCCCccCeEEEEEEeCCCCCCC------CCCCCCeEEEEE
Q 008335          471 RQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEYMLLKSQQPN------QNDETPWTLCVL  544 (569)
Q Consensus       471 RttggGyWKatGk~K~I~d~~G~iVG~KKtLvFyegr~P~gkg~KTgWVMhEYrL~~~~~~n------~~~~~d~VLCKI  544 (569)
                      |++++||||++|+++.|.+. |.+||+||+|+||.+++|  ++.||+|+||||+|.++...+      ....++||||||
T Consensus        89 R~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p--~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrv  165 (174)
T 3ulx_A           89 RAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAP--RGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL  165 (174)
T ss_dssp             EEETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTT--SCEEEEEEEEEEEECSCC-----------CCSSEEEEEE
T ss_pred             eecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCC--CCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEE
Confidence            99999999999999999864 789999999999999987  579999999999999875421      134689999999


Q ss_pred             EEec
Q 008335          545 YDFQ  548 (569)
Q Consensus       545 YkKk  548 (569)
                      |+|+
T Consensus       166 f~K~  169 (174)
T 3ulx_A          166 YNKK  169 (174)
T ss_dssp             EESC
T ss_pred             EEcC
Confidence            9754

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.5e-45  Score=347.79  Aligned_cols=149  Identities=33%  Similarity=0.660  Sum_probs=125.6

Q ss_pred             cCCCCcccccCCChHHHHHHHHHHHHcCCCCCccCCcceeccCCCCCCCccchhhcccCCCeEEEEEecCC---CCCccc
Q 008335          394 MVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQ---PARTVN  470 (569)
Q Consensus       394 maLppgvfRF~PTDEELV~~YLrpKI~G~plP~~~~vI~evDVY~~ePWdLP~~~~~~ge~eWYFFSpR~r---kGrR~n  470 (569)
                      ..|||| |||+|||||||.|||++|+.|.+++  .++|+++|||++|||+||+... .++++||||+++++   +|.|++
T Consensus        15 ~~lPpG-fRF~PTDeELv~~YL~~K~~g~~~~--~~~I~e~Diy~~~Pw~Lp~~~~-~g~~ewyFFs~r~~k~~~g~R~~   90 (171)
T 1ut7_A           15 LSLPPG-FRFYPTDEELMVQYLCRKAAGYDFS--LQLIAEIDLYKFDPWVLPNKAL-FGEKEWYFFSPRDRKYPNGSRPN   90 (171)
T ss_dssp             SCCCTT-EEECCCHHHHHHHTHHHHHTTCCCS--SCCSEECCGGGSCGGGHHHHSS-SCSSEEEEEEECCC-------CC
T ss_pred             cCCCCc-ceeCCChHHHHHHHHHHHhcCCCCC--CCeEeecccccCChhHhhchhh-cCCccEEEEeccccccCCCCccc
Confidence            579999 9999999999999999999999887  6899999999999999999864 36779999999876   468899


Q ss_pred             cccccceEEecCCCeeeeCCCCCEEEEEEEEEEEeccCCCCCCCccCeEEEEEEeCCCCCCC-CCCCCCeEEEEEEEecc
Q 008335          471 RQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEYMLLKSQQPN-QNDETPWTLCVLYDFQR  549 (569)
Q Consensus       471 RttggGyWKatGk~K~I~d~~G~iVG~KKtLvFyegr~P~gkg~KTgWVMhEYrL~~~~~~n-~~~~~d~VLCKIYkKkr  549 (569)
                      |++++||||++|+++.|.+ +|.+||+||+|+||++++|  ++.||+|+||||+|.++...+ ...+++|||||||+|++
T Consensus        91 R~t~~G~Wk~tG~~k~I~~-~~~~vG~KktLvFy~g~~p--~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~  167 (171)
T 1ut7_A           91 RVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAP--KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS  167 (171)
T ss_dssp             EEETTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTT--SCEEEEEEEEEEEECCCC--------CCEEEEEEEECC-
T ss_pred             ccCCCCEEeccCCCceEEe-cCcEEEEEEEEEEEcCcCC--CCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCC
Confidence            9999999999999999986 4689999999999999987  478999999999999875321 23568999999997553

>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}

Probab=99.93  E-value=1.6e-25  Score=216.37  Aligned_cols=186  Identities=19%  Similarity=0.286  Sum_probs=163.4

Q ss_pred             eeEeccccCCCceeeeecCC----eeeeeEEEEEEe-cccccccccCCCCcceeeecccccceEEEEeEeccCCCCcceE
Q 008335          198 FRIIGEAKPGGKLLGYPVNG----TTLSTFQWIRFL-EDDTRHSIEGATEPEYVVTADDINKLIALEHTTIDDEGHEGKL  272 (569)
Q Consensus       198 l~I~Gda~pG~~L~g~~vng----tt~c~FqWvRhl-edgt~~~IegA~~p~Y~vTADDv~~~iaie~~p~dd~~rkGel  272 (569)
                      +.+-|..-+|.-|+--|.+.    -++|+|||+|++ |+|+++.|+||+.|.|.++++|||.+|++||+|      .|+.
T Consensus        15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k   88 (230)
T 4dix_A           15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS   88 (230)
T ss_dssp             EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred             eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence            45668888999999444433    579999999999 889999999999999999999999999999999      4999


Q ss_pred             EEEeecCCCccccChhhHHHHHHhhhceeeEEEEEEeeCCCCCccc-ceeEEEEecceEEEEcCccceeeecccCcceEE
Q 008335          273 VTVFANEHSKIKCDPDMQSKVDMHISRGQAAFRVLLLINSSENTWE-PATLSFTQSRFHVKINSTDVVISEGDLFNIIEI  351 (569)
Q Consensus       273 v~~~an~~~kI~cdp~mq~~I~~~~~~g~a~f~V~l~~~~~~~~wE-~atL~i~r~~y~ik~~~~~~~~i~ekfs~~~~i  351 (569)
                      +++|+|  +||.|||+|++.||+++.+|.+.|.|.++..+.++ || ++++++.+-.++||-.....+++.|+||++.++
T Consensus        89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d-~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQL  165 (230)
T 4dix_A           89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGED-HTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQL  165 (230)
T ss_dssp             EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEE-CCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEE
T ss_pred             EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCcc-CccceEEEEEeccEEEEEecCceEEeeeeeccccee
Confidence            999999  89999999999999999999999999999988888 99 899999999999999987789999999999998


Q ss_pred             EeccCC----cceEEEEccCCCeeeeecCCccccceeeeeehhhc
Q 008335          352 EIPIGL----SRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFR  392 (569)
Q Consensus       352 kip~g~----~~qfvIi~SDG~Eh~Lr~~d~r~RD~~VltlR~F~  392 (569)
                      ==..|-    +.-++-.--.|.+..|-++..|.|..++|--|.|-
T Consensus       166 CGvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA  210 (230)
T 4dix_A          166 CGVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFA  210 (230)
T ss_dssp             EECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eeccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHh
Confidence            655552    34455566778888888999999998888666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	569
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-24

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.2 bits (244), Expect = 2e-24
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 11/160 (6%)

Query: 390 TFRRMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAY 449
              ++ LPP    F PTD EL+  +L  K +   +    + I +I+LY ++P  L + A 
Sbjct: 11  PLTQLSLPPGFR-FYPTDEELMVQYLCRKAAGYDFS--LQLIAEIDLYKFDPWVLPNKA- 66

Query: 450 HSGHDKKYFFTRLSQPART---VNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKK 506
             G  + YFF+   +        NR A  GYW+ TG    ++  +G  V  K +L ++  
Sbjct: 67  LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIG 125

Query: 507 QDPTSKPEKTHWLMKEYMLL-KSQQPNQNDETPWTLCVLY 545
           + P  K  KT+W+M EY L+  S++        W LC +Y
Sbjct: 126 KAP--KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	569
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-44  Score=336.02  Aligned_cols=149  Identities=33%  Similarity=0.664  Sum_probs=124.6

Q ss_pred             ccCCCCcccccCCChHHHHHHHHHHHHcCCCCCccCCcceeccCCCCCCCccchhhcccCCCeEEEEEecCCC---CCcc
Q 008335          393 RMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDKKYFFTRLSQP---ARTV  469 (569)
Q Consensus       393 rmaLppgvfRF~PTDEELV~~YLrpKI~G~plP~~~~vI~evDVY~~ePWdLP~~~~~~ge~eWYFFSpR~rk---GrR~  469 (569)
                      .+.|||| |||+|||||||.|||++|+.|.+++  .++|+++|||.+|||+||+... .++++||||+++.++   +.|.
T Consensus        14 ~l~LPpG-~RF~PTDeELv~~YL~~Ki~g~~l~--~~~I~~~Dvy~~~Pw~Lp~~~~-~~~~~wyFft~~~~k~~~g~r~   89 (166)
T d1ut7a_          14 QLSLPPG-FRFYPTDEELMVQYLCRKAAGYDFS--LQLIAEIDLYKFDPWVLPNKAL-FGEKEWYFFSPRDRKYPNGSRP   89 (166)
T ss_dssp             SSCCCTT-EEECCCHHHHHHHTHHHHHTTCCCS--SCCSEECCGGGSCGGGHHHHSS-SCSSEEEEEEECCC-------C
T ss_pred             cccCCCc-cccCCCcHHHHHHHHHHHHcCCCCC--cccceeccCCcCChhhccchhc-cCcceEEEEeeeccccCCCCcc
Confidence            3579999 9999999999999999999999886  6899999999999999998754 356789999998753   5788


Q ss_pred             ccccccceEEecCCCeeeeCCCCCEEEEEEEEEEEeccCCCCCCCccCeEEEEEEeCCCCCCC-CCCCCCeEEEEEEEec
Q 008335          470 NRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSKPEKTHWLMKEYMLLKSQQPN-QNDETPWTLCVLYDFQ  548 (569)
Q Consensus       470 nRttggGyWKatGk~K~I~d~~G~iVG~KKtLvFyegr~P~gkg~KTgWVMhEYrL~~~~~~n-~~~~~d~VLCKIYkKk  548 (569)
                      +|++++|+||++|+++.|.+ +|.+||+|++|+||+++.+  ++.+|+|+||||+|.++...+ ....++|||||||+|+
T Consensus        90 ~R~~g~G~Wk~~g~~~~i~~-~g~~vG~kk~l~fy~~~~~--~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          90 NRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAP--KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             CEEETTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTT--SCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             ccccCCCEecccCCCceEec-CCcEEEEEEEEEEEecCCC--CCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            99999999999999998885 5789999999999999887  478999999999999876532 3456899999999753