Citrus Sinensis ID: 008340

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57

MSSTEHESSDEDISSSNNNNNGNNGNNFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH

ccccccccccccccccccccccccccccccccccccccCEEccccccccHHHHHHHHHHHHcccccccEEEEcccccccEEEEEEEccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccEEccccccccccccEEEEEcccEEEccccEEEEEEEEEccccEEEEECccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEcccHHHHHHHccccccEEEcccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccEEEEcccHHHHccccccccEEEccccHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcEEEEEcc

**************************NFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLK********************************LLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPP*VMRTKLLKVLFEYGKTSTLIDNVSIIKRYA***SHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAK******EKLAELISL*****************TPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREM************MIVKVLEELQAQAEVALCFVGVKH

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Small RNA degrading nuclease 5	Probable 3'-5' exonuclease degrading single-stranded small RNAs.	probable	Q8L7M4

Prediction of Enzyme Commission Number

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WLJ, chain A
Confidence level:very confident
Coverage over the Query: 213-369
View the alignment between query and template
View the model in PyMOL

Template: 2I09, chain A
Confidence level:probable
Coverage over the Query: 373-453,486-523
View the alignment between query and template
View the model in PyMOL