Citrus Sinensis ID: 008340

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57

MSSTEHESSDEDISSSNNNNNGNNGNNFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH

ccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHcccccccEEEEcccccccEEEEEEEccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccEEccccccccccccEEEEEcccEEEccccEEEEEEEEEccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEcccHHHHHHHccccccEEEcccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccEEEEcccHHHHccccccccEEEccccHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcEEEEEcc

cccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEccccccEEEEEEEccccHHHHHccccccHHHcHcccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHccccccccHHccccccccccccEEEcHHHHHHccccccccccEEccccccccccccEEEEEcEEEEcccccEEEEEEEEEccccEEEHccccccccEEEcccccccccHHHHccccccHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccEEEEEEEEcccccccccHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccEEEEcccccccccccccEEEEEccHHHHHHHHHHHHccccccEEEEEHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccc

msstehessdedisssnnnnngnngnnfydiygpqgkaeVIFKnestlnltdvQGLVTWVLAdgimpswvfiknkpliQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAvdsmtkstqpsqkencstvsensssaellkdipfpitYYTLTEkqlednnycynqpgflstvpapfgsspyeILALDCEMCYTNEGLELTRVTLVDIKGQVLLdklvkpsnaivdyntrysgithemlSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAvlykhpqggshktSLRVLAKKFLSREiqqsgfghdsTEDARAAMELALLKirngpdfgsppsvmRTKLLKVLFEYGKTSTLIDNVSIIKRYasesshaipvssddEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCdkklsdskrfksfvTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH

msstehessdedisssnnnnngnnGNNFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVdsmtkstqpsqkencstvsensssaellkdiPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVlldklvkpsnaiVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYkhpqggshkTSLRVLAKKFLSREIQqsgfghdsteDARAAMELALLKIrngpdfgsppsVMRTKLLKVLFEYGKTSTLIDNVSIIKRYasesshaipvssddevLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLatcdkklsdskrfksfvtpeIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH

MSSTEHESSDEDIsssnnnnngnngnnFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH

**************************NFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLK********************************LLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGG*HKTSLRVLAKKFL*********************ELALLKIRN*********VMRTKLLKVLFEYGKTSTLIDNVSIIKRYA***********************KNDRIHFVWTQFSELNLHFKKQAK**AKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREM************MIVKVLEELQAQAEVALCFVGV**

***********************************G******KNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALY********************************************************************************FPITYYTLTEKQLE**NYCYNQPGF**************ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPP*******************LIDNVSI********SHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKK*********EKLAELISL******************PEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHR******************VKVLEELQAQAEVALCFVGVKH

****************NNNNNGNNGNNFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKR***************************AELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASE**************SKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH

*************************NNFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKEN*S***ENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKD*********ELISL*****************TPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		569	2.2.26 [Sep-21-2011]
Q8L7M4		567	Small RNA degrading nucle	yes	no	0.987	0.991	0.660	0.0
O94443		631	Uncharacterized exonuclea	yes	no	0.843	0.760	0.315	4e-58
P53331		553	RNA exonuclease 1 OS=Sacc	yes	no	0.764	0.786	0.312	7e-45
A0PJM3		583	Putative exonuclease GOR-	yes	no	0.302	0.295	0.497	7e-41
Q8IX06		675	Exonuclease GOR OS=Homo s	yes	no	0.302	0.254	0.497	1e-40
P48778		690	Exonuclease GOR OS=Pan tr	no	no	0.274	0.226	0.525	2e-40
Q7TT28		1213	RNA exonuclease 1 homolog	yes	no	0.272	0.127	0.529	1e-39
Q2T9U5		783	Putative RNA exonuclease	no	no	0.507	0.369	0.360	7e-37
Q96IC2		774	Putative RNA exonuclease	no	no	0.274	0.201	0.496	5e-35
Q4R9F7		772	Putative RNA exonuclease	N/A	no	0.274	0.202	0.496	8e-35

>sp\|Q8L7M4\|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2	Back alignment and function desciption

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/574 (66%), Positives = 455/574 (79%), Gaps = 12/574 (2%)

Query: 1   MSSTEH----ESSDEDISSSNNNNNGNNGNNFYDIYGPQGKAEVIFKN-ESTLNLTDVQG 55
           MSS++     E++ ED    +  +  N GN+F+DIYGP+ KAE+ FK+ E+TLNL DVQG
Sbjct: 1   MSSSKRKRGAETAAED--CDDGTDKSNTGNSFFDIYGPEAKAELDFKSPETTLNLQDVQG 58

Query: 56  LVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALL 115
           LVTWVLA+G MPSWVFIKNKPLI KVV+LY+PGLDAALYLS SKTL+  K CC  P ALL
Sbjct: 59  LVTWVLAEGFMPSWVFIKNKPLIPKVVLLYLPGLDAALYLSHSKTLSSLKSCCGNPMALL 118

Query: 116 ALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPF 175
           ALSC+ D M TID +LTCK ++K+    S+      S  E C+ + +  S  EL KDIPF
Sbjct: 119 ALSCVVDEMRTIDTILTCKGRKKKTVTSSVEPPPLVSSPEACNLMGK--SFVELTKDIPF 176

Query: 176 PITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTL 235
           P++YYTL++K++E N Y + +     T+PAP GS P EI+ALDCEMC T EGLELTRVTL
Sbjct: 177 PVSYYTLSQKEMEQNGYTFEKLELTPTLPAPSGSCPPEIVALDCEMCITKEGLELTRVTL 236

Query: 236 VDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVG 295
           VDI+GQVLLDKLV P+N I DYNTRYSGIT  M+ GVTT+LKDIQEEFLKLV+KETILVG
Sbjct: 237 VDIQGQVLLDKLVMPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVG 296

Query: 296 HSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTED 355
           HSLENDLL+LKISH LVIDTAVLYKHP G S+KT LR+LAKKFL+REIQ+S  GHDS ED
Sbjct: 297 HSLENDLLSLKISHNLVIDTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAED 356

Query: 356 ARAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAI 415
           A+AAM+LALLKI++GPDFGSPP V+R KLL VL E GKT+++IDN++I+KRYASESS+AI
Sbjct: 357 AKAAMDLALLKIKHGPDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAI 416

Query: 416 PVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDK 475
           PVSSDDE LSKA KEVKN R  FVWTQFSELN HF+ +A D  KLN +LAE+ISL TC+K
Sbjct: 417 PVSSDDEALSKAVKEVKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNK 476

Query: 476 KLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLR 535
           K   S   KS V+PE KEIL + + RV SLY ALPTN M I+CTGHGDT+IVHR+R+ML+
Sbjct: 477 K---SGLKKSNVSPETKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLK 533

Query: 536 EQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH 569
           ++ +    R+ +VKVLEELQAQAEVALCFVG+K 
Sbjct: 534 DEDEIGFDREKLVKVLEELQAQAEVALCFVGIKQ 567

Probable 3'-5' exonuclease degrading single-stranded small RNAs.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp\|O94443\|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2	Back alignment and function description

>sp\|P53331\|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH70 PE=1 SV=1	Back alignment and function description

>sp\|A0PJM3\|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2	Back alignment and function description

>sp\|Q8IX06\|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2	Back alignment and function description

>sp\|P48778\|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3	Back alignment and function description

>sp\|Q7TT28\|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1	Back alignment and function description

>sp\|Q2T9U5\|REXON_BOVIN Putative RNA exonuclease NEF-sp OS=Bos taurus PE=2 SV=1	Back alignment and function description

>sp\|Q96IC2\|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1	Back alignment and function description

>sp\|Q4R9F7\|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis GN=QtsA-10054 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		569
225457811		572	PREDICTED: small RNA degrading nuclease	0.998	0.993	0.719	0.0
255558446		572	rnase h, putative [Ricinus communis] gi\|	0.978	0.973	0.710	0.0
302142746		572	unnamed protein product [Vitis vinifera]	0.998	0.993	0.712	0.0
356552761		567	PREDICTED: small RNA degrading nuclease	0.980	0.984	0.678	0.0
224085061		545	predicted protein [Populus trichocarpa]	0.950	0.992	0.684	0.0
356546844		576	PREDICTED: small RNA degrading nuclease	0.980	0.968	0.676	0.0
449458093		572	PREDICTED: small RNA degrading nuclease	1.0	0.994	0.655	0.0
42568083		567	small RNA degrading nuclease 5 [Arabidop	0.987	0.991	0.660	0.0
357155036		621	PREDICTED: small RNA degrading nuclease	0.934	0.856	0.595	0.0
238009286		552	unknown [Zea mays] gi\|413916435\|gb\|AFW56	0.936	0.965	0.583	0.0

>gi\|225457811\|ref\|XP_002278571.1\| PREDICTED: small RNA degrading nuclease 5-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/573 (71%), Positives = 480/573 (83%), Gaps = 5/573 (0%)

Query: 1   MSSTEHESSDEDISSSNNNNNGNNGNNFYDIYGPQGKAEVIFKN---ESTLNLTDVQGLV 57
           M S +H++  + +S   +  N    + F+DIYGP+ KAEV+FK    +STLNL DVQGLV
Sbjct: 1   MRSPKHKTQ-KPVSKPESATNATASSTFFDIYGPEAKAEVVFKTPDADSTLNLQDVQGLV 59

Query: 58  TWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLAL 117
           TWVLA+G MPSW+FIKNKPLI KVVMLYVPGLDAALY+SQSK L+G KE C  PRA+LAL
Sbjct: 60  TWVLAEGFMPSWIFIKNKPLIPKVVMLYVPGLDAALYMSQSKILSGLKEFCGNPRAVLAL 119

Query: 118 SCLSDTMLTIDGLLTCKLKRKRNAVDS-MTKSTQPSQKENCSTVSENSSSAELLKDIPFP 176
           SC+SD M TID LLTCKLKRKRN VDS + K  Q S++  CS  S NSSS E+LKD+PFP
Sbjct: 120 SCVSDRMQTIDALLTCKLKRKRNEVDSALKKHDQTSEQGGCSGGSNNSSSMEVLKDLPFP 179

Query: 177 ITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLV 236
           ITYYTLT K+LEDN YC++QPGF+ST+PAP G   YE+LALDCEMC T+EG ELTR++LV
Sbjct: 180 ITYYTLTAKELEDNGYCHDQPGFVSTLPAPSGCRLYEMLALDCEMCVTSEGFELTRISLV 239

Query: 237 DIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGH 296
           DIKGQV+LDKLVKPSN I+DYNTRYSGIT EML+GVTT LKD+QE+FLKLVYKETILVGH
Sbjct: 240 DIKGQVVLDKLVKPSNRIIDYNTRYSGITCEMLNGVTTGLKDVQEDFLKLVYKETILVGH 299

Query: 297 SLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDA 356
           SLENDLLALKISH LVIDTAVLYKHP+G S+KT+LRVL ++FLSREIQ+S  GHDS EDA
Sbjct: 300 SLENDLLALKISHDLVIDTAVLYKHPRGASYKTALRVLTRRFLSREIQESRNGHDSIEDA 359

Query: 357 RAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIP 416
           RAAMELALLKIR+GP+FGSPPS MR KLL VL +YGKTS+ ID++SI++RY SE+SHA P
Sbjct: 360 RAAMELALLKIRHGPEFGSPPSFMRKKLLTVLNDYGKTSSFIDDISIVRRYTSEASHAFP 419

Query: 417 VSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKK 476
           VSSD E LSKA+KEVKND++HFVWTQFSELN +FKKQA+D  KLN KLAE+ISL TC+KK
Sbjct: 420 VSSDVEALSKAKKEVKNDKVHFVWTQFSELNSYFKKQAEDTDKLNAKLAEMISLLTCNKK 479

Query: 477 LSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLRE 536
            +  K  K  VT E+K+IL   D R+ SLY  LP NTMLIICTGHGDTAIVHRLR+MLRE
Sbjct: 480 STTPKGIKFSVTSELKDILTCIDTRIRSLYHELPANTMLIICTGHGDTAIVHRLRKMLRE 539

Query: 537 QSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH 569
           Q + ++SR+ +VKVLEELQAQAEVALCFVGVKH
Sbjct: 540 QIETTVSREKLVKVLEELQAQAEVALCFVGVKH 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255558446\|ref\|XP_002520248.1\| rnase h, putative [Ricinus communis] gi\|223540467\|gb\|EEF42034.1\| rnase h, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|302142746\|emb\|CBI19949.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356552761\|ref\|XP_003544731.1\| PREDICTED: small RNA degrading nuclease 5-like [Glycine max]	Back alignment and taxonomy information

>gi\|224085061\|ref\|XP_002307475.1\| predicted protein [Populus trichocarpa] gi\|222856924\|gb\|EEE94471.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356546844\|ref\|XP_003541832.1\| PREDICTED: small RNA degrading nuclease 5-like [Glycine max]	Back alignment and taxonomy information

>gi\|449458093\|ref\|XP_004146782.1\| PREDICTED: small RNA degrading nuclease 5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|42568083\|ref\|NP_197952.2\| small RNA degrading nuclease 5 [Arabidopsis thaliana] gi\|215274964\|sp\|Q8L7M4.2\|SDN5_ARATH RecName: Full=Small RNA degrading nuclease 5 gi\|332006106\|gb\|AED93489.1\| small RNA degrading nuclease 5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357155036\|ref\|XP_003576986.1\| PREDICTED: small RNA degrading nuclease 5-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|238009286\|gb\|ACR35678.1\| unknown [Zea mays] gi\|413916435\|gb\|AFW56367.1\| hypothetical protein ZEAMMB73_838045 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		569
TAIR\|locus:2145244		567	AT5G25800 [Arabidopsis thalian	0.942	0.945	0.684	4.4e-194
DICTYBASE\|DDB_G0291590		694	rexo1 "RNA exonuclease 1" [Dic	0.671	0.550	0.340	1.8e-59
ASPGD\|ASPL0000067196		723	AN7566 [Emericella nidulans (t	0.543	0.427	0.355	7.3e-57
POMBASE\|SPAC637.09		631	SPAC637.09 "ribonuclease H70 (	0.836	0.754	0.333	2.5e-56
SGD\|S000003508		553	RNH70 "3'-5' exoribonuclease"	0.653	0.672	0.332	2.3e-50
UNIPROTKB\|G4MYV4		720	MGG_15523 "Uncharacterized pro	0.284	0.225	0.488	7.5e-48
CGD\|CAL0006149		744	orf19.6195 [Candida albicans (	0.532	0.407	0.355	7.4e-45
UNIPROTKB\|F1P0Z1		1217	REXO1 "Uncharacterized protein	0.300	0.140	0.494	2.9e-42
UNIPROTKB\|A0PJM3		583	REXO1L2P "Putative exonuclease	0.300	0.293	0.5	1.2e-41
FB\|FBgn0039544		991	CG12877 [Drosophila melanogast	0.300	0.172	0.497	1.4e-41

TAIR\|locus:2145244 AT5G25800 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1880 (666.9 bits), Expect = 4.4e-194, P = 4.4e-194
 Identities = 371/542 (68%), Positives = 440/542 (81%)

Query:    28 FYDIYGPQGKAEVIFKN-ESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYV 86
             F+DIYGP+ KAE+ FK+ E+TLNL DVQGLVTWVLA+G MPSWVFIKNKPLI KVV+LY+
Sbjct:    30 FFDIYGPEAKAELDFKSPETTLNLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVLLYL 89

Query:    87 PGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMT 146
             PGLDAALYLS SKTL+  K CC  P ALLALSC+ D M TID +LTCK ++K+    S+ 
Sbjct:    90 PGLDAALYLSHSKTLSSLKSCCGNPMALLALSCVVDEMRTIDTILTCKGRKKKTVTSSVE 149

Query:   147 KSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAP 206
                  S  E C+ + +  S  EL KDIPFP++YYTL++K++E N Y + +     T+PAP
Sbjct:   150 PPPLVSSPEACNLMGK--SFVELTKDIPFPVSYYTLSQKEMEQNGYTFEKLELTPTLPAP 207

Query:   207 FGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITH 266
              GS P EI+ALDCEMC T EGLELTRVTLVDI+GQVLLDKLV P+N I DYNTRYSGIT 
Sbjct:   208 SGSCPPEIVALDCEMCITKEGLELTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITA 267

Query:   267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGS 326
              M+ GVTT+LKDIQEEFLKLV+KETILVGHSLENDLL+LKISH LVIDTAVLYKHP G S
Sbjct:   268 VMMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKHPHGRS 327

Query:   327 HKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPSVMRTKLLK 386
             +KT LR+LAKKFL+REIQ+S  GHDS EDA+AAM+LALLKI++GPDFGSPP V+R KLL 
Sbjct:   328 YKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFGSPPEVIRKKLLA 387

Query:   387 VLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSEL 446
             VL E GKT+++IDN++I+KRYASESS+AIPVSSDDE LSKA KEVKN R  FVWTQFSEL
Sbjct:   388 VLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEALSKAVKEVKNKRSQFVWTQFSEL 447

Query:   447 NLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLY 506
             N HF+ +A D  KLN +LAE+ISL TC+KK S  K  KS V+PE KEIL + + RV SLY
Sbjct:   448 NAHFQSRADDPQKLNSRLAEMISLLTCNKK-SGLK--KSNVSPETKEILKKMNERVQSLY 504

Query:   507 TALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVG 566
              ALPTN M I+CTGHGDT+IVHR+R+ML+++ +    R+ +VKVLEELQAQAEVALCFVG
Sbjct:   505 AALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFDREKLVKVLEELQAQAEVALCFVG 564

Query:   567 VK 568
             +K
Sbjct:   565 IK 566

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

DICTYBASE\|DDB_G0291590 rexo1 "RNA exonuclease 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000067196 AN7566 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

POMBASE\|SPAC637.09 SPAC637.09 "ribonuclease H70 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

SGD\|S000003508 RNH70 "3'-5' exoribonuclease" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MYV4 MGG_15523 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

CGD\|CAL0006149 orf19.6195 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0Z1 REXO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A0PJM3 REXO1L2P "Putative exonuclease GOR-like protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

FB\|FBgn0039544 CG12877 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7M4	SDN5_ARATH	3, ., 1, ., -, ., -	0.6602	0.9876	0.9911	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.13.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		569
cd06145		150	cd06145, REX1_like, DEDDh 3'-5' exonuclease domain	1e-87
cd06137		161	cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease doma	3e-50
cd06144		152	cd06144, REX4_like, DEDDh 3'-5' exonuclease domain	8e-38
smart00479		169	smart00479, EXOIII, exonuclease domain in DNA-poly	4e-36
cd06149		157	cd06149, ISG20, DEDDh 3'-5' exonuclease domain of	8e-33
pfam00929		161	pfam00929, RNase_T, Exonuclease	8e-23
cd06143		174	cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain	1e-20
cd06127		159	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam	5e-12
COG0847		243	COG0847, DnaQ, DNA polymerase III, epsilon subunit	4e-11
PRK14654		302	PRK14654, mraY, phospho-N-acetylmuramoyl-pentapept	0.003
cd06141		170	cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o	0.003

>gnl\|CDD\|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins	Back alignment and domain information

 Score =  267 bits (684), Expect = 1e-87
 Identities = 98/150 (65%), Positives = 120/150 (80%)

Query: 215 LALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTT 274
            ALDCEMCYT +GLELTRVT+VD  G+V+LD+LVKP   IVDYNTR+SGIT EML  VTT
Sbjct: 1   FALDCEMCYTTDGLELTRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEMLENVTT 60

Query: 275 SLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVL 334
           +L+D+Q++ L L+  +TILVGHSLENDL ALK+ H  VIDTA+L+ HP+G  +K SL+ L
Sbjct: 61  TLEDVQKKLLSLISPDTILVGHSLENDLKALKLIHPRVIDTAILFPHPRGPPYKPSLKNL 120

Query: 335 AKKFLSREIQQSGFGHDSTEDARAAMELAL 364
           AKK+L R+IQQ   GHDS EDARAA+EL  
Sbjct: 121 AKKYLGRDIQQGEGGHDSVEDARAALELVK 150

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T. Length = 150

>gnl\|CDD\|99840 cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins	Back alignment and domain information

>gnl\|CDD\|99847 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins	Back alignment and domain information

>gnl\|CDD\|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases	Back alignment and domain information

>gnl\|CDD\|99852 cd06149, ISG20, DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins	Back alignment and domain information

>gnl\|CDD\|216200 pfam00929, RNase_T, Exonuclease	Back alignment and domain information

>gnl\|CDD\|99846 cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2	Back alignment and domain information

>gnl\|CDD\|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	Back alignment and domain information

>gnl\|CDD\|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|173117 PRK14654, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	Back alignment and domain information

>gnl\|CDD\|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		569
KOG2248		380	consensus 3'-5' exonuclease [Replication, recombin	100.0
cd06143		174	PAN2_exo DEDDh 3'-5' exonuclease domain of the euk	100.0
KOG2249		280	consensus 3'-5' exonuclease [Replication, recombin	100.0
cd06145		150	REX1_like DEDDh 3'-5' exonuclease domain of RNA ex	100.0
cd06149		157	ISG20 DEDDh 3'-5' exonuclease domain of Interferon	100.0
cd06137		161	DEDDh_RNase DEDDh 3'-5' exonuclease domain of the	100.0
cd06144		152	REX4_like DEDDh 3'-5' exonuclease domain of RNA ex	99.96
PRK07247		195	DNA polymerase III subunit epsilon; Validated	99.9
PRK07740		244	hypothetical protein; Provisional	99.89
cd06130		156	DNA_pol_III_epsilon_like an uncharacterized bacter	99.88
smart00479		169	EXOIII exonuclease domain in DNA-polymerase alpha	99.88
PRK06310		250	DNA polymerase III subunit epsilon; Validated	99.87
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.87
PRK06309		232	DNA polymerase III subunit epsilon; Validated	99.87
PRK05711		240	DNA polymerase III subunit epsilon; Provisional	99.87
PRK06807		313	DNA polymerase III subunit epsilon; Validated	99.87
PRK09145		202	DNA polymerase III subunit epsilon; Validated	99.87
PRK09146		239	DNA polymerase III subunit epsilon; Validated	99.86
PRK06063		313	DNA polymerase III subunit epsilon; Provisional	99.86
TIGR01406		225	dnaQ_proteo DNA polymerase III, epsilon subunit, P	99.86
PRK07942		232	DNA polymerase III subunit epsilon; Provisional	99.86
PRK07983		219	exodeoxyribonuclease X; Provisional	99.86
PRK06195		309	DNA polymerase III subunit epsilon; Validated	99.85
TIGR00573		217	dnaq exonuclease, DNA polymerase III, epsilon subu	99.85
PRK08517		257	DNA polymerase III subunit epsilon; Provisional	99.85
cd06131		167	DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl	99.85
cd06136		177	TREX1_2 DEDDh 3'-5' exonuclease domain of three pr	99.85
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.84
PRK07748		207	sporulation inhibitor KapD; Provisional	99.84
PRK07883		557	hypothetical protein; Validated	99.83
cd06127		159	DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh	99.82
TIGR01298		200	RNaseT ribonuclease T. in gamma-subdivision Proteo	99.81
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.81
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.81
cd06134		189	RNaseT DEDDh 3'-5' exonuclease domain of RNase T.	99.8
PRK05168		211	ribonuclease T; Provisional	99.8
PRK06722		281	exonuclease; Provisional	99.79
cd06133		176	ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o	99.79
TIGR01405		1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	99.78
COG2176		1444	PolC DNA polymerase III, alpha subunit (gram-posit	99.78
PF00929		164	RNase_T: Exonuclease; InterPro: IPR013520 This ent	99.78
PRK05601		377	DNA polymerase III subunit epsilon; Validated	99.77
PRK09182		294	DNA polymerase III subunit epsilon; Validated	99.77
COG0847		243	DnaQ DNA polymerase III, epsilon subunit and relat	99.77
cd06138		183	ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o	99.74
PRK11779		476	sbcB exonuclease I; Provisional	99.65
PRK00448		1437	polC DNA polymerase III PolC; Validated	99.64
cd06135		173	Orn DEDDh 3'-5' exonuclease domain of oligoribonuc	99.64
PTZ00315		582	2'-phosphotransferase; Provisional	99.64
PRK05359		181	oligoribonuclease; Provisional	99.63
cd05160		199	DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain	98.48
PF01612		176	DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00	98.38
COG5018		210	KapD Inhibitor of the KinA pathway to sporulation,	98.36
cd06139		193	DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease	98.36
KOG0542		280	consensus Predicted exonuclease [Replication, reco	98.29
KOG3242		208	consensus Oligoribonuclease (3'->5' exoribonucleas	98.17
cd06146		193	mut-7_like_exo DEDDy 3'-5' exonuclease domain of C	98.12
COG1949		184	Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA	97.94
PRK05755		880	DNA polymerase I; Provisional	97.88
cd06141		170	WRN_exo DEDDy 3'-5' exonuclease domain of WRN and	97.83
cd06125		96	DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas	97.7
cd00007		155	35EXOc 3'-5' exonuclease. The 35EXOc domain is res	97.67
cd06129		161	RNaseD_like DEDDy 3'-5' exonuclease domain of RNas	97.65
PRK10829		373	ribonuclease D; Provisional	97.56
COG2925		475	SbcB Exonuclease I [DNA replication, recombination	97.47
cd05780		195	DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom	97.42
smart00474		172	35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo	96.96
TIGR01696		381	deoB phosphopentomutase. This protein is involved	96.89
TIGR01388		367	rnd ribonuclease D. This model describes ribonucle	96.88
cd05784		193	DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of	96.61
cd05779		204	DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai	96.58
cd06142		178	RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon	96.56
cd06148		197	Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro	96.53
COG0349		361	Rnd Ribonuclease D [Translation, ribosomal structu	96.4
cd05785		207	DNA_polB_like2_exo Uncharacterized bacterial subgr	96.39
cd05781		188	DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of	96.29
PRK05362		394	phosphopentomutase; Provisional	96.25
COG1015		397	DeoB Phosphopentomutase [Carbohydrate transport an	96.02
cd05783		204	DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of	95.86
cd05777		230	DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain	95.79
PF13482		164	RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A	95.44
PRK12383		406	putative mutase; Provisional	95.32
cd06140		178	DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5'	94.82
smart00486		471	POLBc DNA polymerase type-B family. DNA polymerase	93.45
PRK05762		786	DNA polymerase II; Reviewed	93.28
cd09018		150	DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease	93.01
PF01676		252	Metalloenzyme: Metalloenzyme superfamily; InterPro	92.43
KOG2126		895	consensus Glycosylphosphatidylinositol anchor synt	92.38
cd06147		192	Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y	92.14
COG0749		593	PolA DNA polymerase I - 3'-5' exonuclease and poly	92.0
PF03104		325	DNA_pol_B_exo1: DNA polymerase family B, exonuclea	90.99
cd05778		231	DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease	90.88
cd05782		208	DNA_polB_like1_exo Uncharacterized bacterial subgr	90.56
TIGR00593		887	pola DNA polymerase I. This family is based on the	89.92
PF04857		262	CAF1: CAF1 family ribonuclease; InterPro: IPR00694	89.38
cd05776		234	DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas	87.88
PF01663		365	Phosphodiest: Type I phosphodiesterase / nucleotid	86.94
PF10108		209	DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate	83.24
PLN02538		558	2,3-bisphosphoglycerate-independent phosphoglycera	80.29

>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=7.9e-47  Score=398.56  Aligned_cols=335  Identities=39%  Similarity=0.500  Sum_probs=248.6

Q ss_pred             CceeEeeeCCCcceEEEEecC-Cc--cchhhHHHHHHHHhcCCCCCceEEeccCCCcceEEEEEecCcChhhhhcccccc
Q 008340           25 GNNFYDIYGPQGKAEVIFKNE-ST--LNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTL  101 (569)
Q Consensus        25 ~~~~~~i~g~~ak~ev~f~~~-~~--i~l~dlq~L~l~~~~~~~~P~W~~v~~~~~i~kvVvl~vpGl~~~~~~~~~~~~  101 (569)
                      ..-+++.+|+-.+.. .+... ++  +..+..+....+..+.+.+|.|..+.+....++...++.+|+..+.+......+
T Consensus        34 ~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  112 (380)
T KOG2248|consen   34 LQLFPDLEGALLKTC-SSIAPNSPLCLNSKGREGTRISLVAEGNAPKIVLLSKPELKQKDYLLSFSGLSKAILNLVATNL  112 (380)
T ss_pred             ccccccccccccccc-cccccccchhccccccccchhHHHHhccCceeeeeccchhhhhhheeccCCccHHHhhhhhccc
Confidence            678899999988888 66555 44  677778888888889999999999999999999999999999999886554333


Q ss_pred             ccccccCCCCcccccccccc-----cccchhhhhhhccccccccccccCCCCCCCCCcCCCCccCCCCchhhhcCCCCCC
Q 008340          102 AGFKECCDKPRALLALSCLS-----DTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFP  176 (569)
Q Consensus       102 ~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (569)
                      .........+.+-....|..     ....-+. -+.|..+..+...........  .+..+           ....... 
T Consensus       113 ~~~~~~~~~~~~~~~~r~~~~f~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~-  177 (380)
T KOG2248|consen  113 KDVDRSDKALLPRPCSRCGSEFYVTEKGREFK-DLLCKYHPGKLIREPRRGFKD--KTEDC-----------CTPKEGL-  177 (380)
T ss_pred             ccccccCccccCchhhhhhhhhccccchhhhh-hhhccccccccccchhccccc--cCchh-----------hcccccC-
Confidence            32222211111000000000     0000011 112322211111100000000  00001           1111112 


Q ss_pred             cccccCCHHHHhhCCccc-CCCCceeccCCC--CCCCCCcEEEEEeceecCCCCceEEEEEEEEeeCeEEEEEEEecCCC
Q 008340          177 ITYYTLTEKQLEDNNYCY-NQPGFLSTVPAP--FGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNA  253 (569)
Q Consensus       177 ~~~~~l~~~~l~~~~~~~-~~~~~~~t~~~~--~~~~~~~~vAiDcEm~~t~~g~eL~rVsvVd~~G~vv~D~lVkP~~~  253 (569)
                      +..+.+..+...+..|+. ...+|+++...+  ..+.+.+++|||||||.+..|.|++||++||.+|+++||+||+|..|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~i~AlDCEm~~te~g~el~RVt~VD~~~~vi~D~fVkP~~~  257 (380)
T KOG2248|consen  178 VSFLCLGPDYHVEILFPSESLDEFVQTLGAKGKAVSKSPNIFALDCEMVVTENGLELTRVTAVDRDGKVILDTFVKPNKP  257 (380)
T ss_pred             ccceeecccccccccCccccccceecccccCCCCCCCCCCeEEEEeeeeeeccceeeEEeeeeeccCcEEeEEeecCCCc
Confidence            222334445555555554 456777776553  23445789999999999999999999999999999999999999999


Q ss_pred             CCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcCCCEEEEeCchhhHHHHcccCCCccchhhhccccCCC-CCCchHH
Q 008340          254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGG-SHKTSLR  332 (569)
Q Consensus       254 I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~~tILVGHsL~~DL~aLki~hp~viDT~~L~~~~~g~-~~k~sLk  332 (569)
                      |+||+|+|||||++|++++++++.|||.+|+++++.+||||||||++||++||+.||.||||+.+|.++.|+ +++.||+
T Consensus       258 VvDy~T~~SGIT~~~~e~~t~tl~dvq~~l~~~~~~~TILVGHSLenDL~aLKl~H~~ViDTa~lf~~~~g~~~~k~sLk  337 (380)
T KOG2248|consen  258 VVDYNTRYSGITEEDLENSTITLEDVQKELLELISKNTILVGHSLENDLKALKLDHPSVIDTAVLFKHPTGPYPFKSSLK  337 (380)
T ss_pred             ccccccccccccHHHHhcCccCHHHHHHHHHhhcCcCcEEEeechhhHHHHHhhhCCceeeeeEEEecCCCCccchHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999885 8999999


Q ss_pred             HHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHcCCCCCC
Q 008340          333 VLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGS  375 (569)
Q Consensus       333 ~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g~~fg~  375 (569)
                      +||+.|||+.||++..||||+|||.|||+|++++++++..||.
T Consensus       338 ~L~~~~L~~~Iq~~~~~HdS~eDA~acm~Lv~~k~~~~~~~g~  380 (380)
T KOG2248|consen  338 NLAKSYLGKLIQEGVGGHDSVEDALACMKLVKLKIKNSESQGS  380 (380)
T ss_pred             HHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhcccccCC
Confidence            9999999999996567899999999999999999999998873

>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2	Back alignment and domain information

>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair]	Back alignment and domain information

>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins	Back alignment and domain information

>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins	Back alignment and domain information

>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins	Back alignment and domain information

>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins	Back alignment and domain information

>PRK07247 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK07740 hypothetical protein; Provisional	Back alignment and domain information

>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	Back alignment and domain information

>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases	Back alignment and domain information

>PRK06310 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>PRK06309 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK05711 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>PRK06807 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK09145 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK09146 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK06063 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial	Back alignment and domain information

>PRK07942 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>PRK07983 exodeoxyribonuclease X; Provisional	Back alignment and domain information

>PRK06195 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family	Back alignment and domain information

>PRK08517 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins	Back alignment and domain information

>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK07748 sporulation inhibitor KapD; Provisional	Back alignment and domain information

>PRK07883 hypothetical protein; Validated	Back alignment and domain information

>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family	Back alignment and domain information

>TIGR01298 RNaseT ribonuclease T	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T	Back alignment and domain information

>PRK05168 ribonuclease T; Provisional	Back alignment and domain information

>PRK06722 exonuclease; Provisional	Back alignment and domain information

>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins	Back alignment and domain information

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type	Back alignment and domain information

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III	Back alignment and domain information

>PRK05601 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK09182 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]	Back alignment and domain information

>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins	Back alignment and domain information

>PRK11779 sbcB exonuclease I; Provisional	Back alignment and domain information

>PRK00448 polC DNA polymerase III PolC; Validated	Back alignment and domain information

>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins	Back alignment and domain information

>PTZ00315 2'-phosphotransferase; Provisional	Back alignment and domain information

>PRK05359 oligoribonuclease; Provisional	Back alignment and domain information

>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	Back alignment and domain information

>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides	Back alignment and domain information

>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only]	Back alignment and domain information

>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases	Back alignment and domain information

>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair]	Back alignment and domain information

>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification]	Back alignment and domain information

>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins	Back alignment and domain information

>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]	Back alignment and domain information

>PRK05755 DNA polymerase I; Provisional	Back alignment and domain information

>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins	Back alignment and domain information

>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily	Back alignment and domain information

>cd00007 35EXOc 3'-5' exonuclease	Back alignment and domain information

>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins	Back alignment and domain information

>PRK10829 ribonuclease D; Provisional	Back alignment and domain information

>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair]	Back alignment and domain information

>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases	Back alignment and domain information

>smart00474 35EXOc 3'-5' exonuclease	Back alignment and domain information

>TIGR01696 deoB phosphopentomutase	Back alignment and domain information

>TIGR01388 rnd ribonuclease D	Back alignment and domain information

>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases	Back alignment and domain information

>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase	Back alignment and domain information

>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins	Back alignment and domain information

>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins	Back alignment and domain information

>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	Back alignment and domain information

>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases	Back alignment and domain information

>PRK05362 phosphopentomutase; Provisional	Back alignment and domain information

>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases	Back alignment and domain information

>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase	Back alignment and domain information

>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A	Back alignment and domain information

>PRK12383 putative mutase; Provisional	Back alignment and domain information

>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases	Back alignment and domain information

>smart00486 POLBc DNA polymerase type-B family	Back alignment and domain information

>PRK05762 DNA polymerase II; Reviewed	Back alignment and domain information

>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins	Back alignment and domain information

>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases

Back alignment and domain information

>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]	Back alignment and domain information

>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins	Back alignment and domain information

>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]	Back alignment and domain information

>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included	Back alignment and domain information

>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase	Back alignment and domain information

>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	Back alignment and domain information

>TIGR00593 pola DNA polymerase I	Back alignment and domain information

>PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation	Back alignment and domain information

>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase	Back alignment and domain information

>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase)	Back alignment and domain information

>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins	Back alignment and domain information

>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		569
1wlj_A		189	Human Isg20 Length = 189		1e-20

>pdb|1WLJ|A Chain A, Human Isg20 Length = 189

Back alignment and structure

Iteration: 1

Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 10/164 (6%) Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270 E++A+DCEM E L R +LV++ G VL DK ++P I DY TR SG+T + + Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65 Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKHPQ-G 324 G T + E L+L+ K ++VGH L++D ALK +S + DT+ +L++ + Sbjct: 66 G-ATPFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123 Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368 + SLRVL+++ L + IQ S GH S EDARA MEL + R Sbjct: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 167

PyMOL of 1wlj

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		569
1wlj_A		189	Interferon stimulated gene 20KDA; exoribonuclease,	1e-72
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
3mxm_B		242	Three prime repair exonuclease 1; RNAse H-like fol	6e-05
1y97_A		238	Three prime repair exonuclease 2; TREX2, hydrolase	2e-04
2e6m_A		208	Werner syndrome ATP-dependent helicase homolog; AP	2e-04
3u3y_B		314	Three prime repair exonuclease 1; RNAse H fold, 3'	3e-04
2p1j_A		186	POLIII, DNA polymerase III POLC-type; structural g	7e-04

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Length = 189	Back alignment and structure

 Score =  229 bits (586), Expect = 1e-72
 Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 210 SPYEILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
              E++A+DCEM       E  L R +LV++ G VL DK ++P   I DY TR SG+T +
Sbjct: 3   GSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQ 62

Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAV----LYKH 321
            + G T      + E L+L+ K  ++VGH L++D  ALK       + DT+       + 
Sbjct: 63  HMVGATP-FAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREA 120

Query: 322 PQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSP 376
                 + SLRVL+++ L + IQ S  GH S EDARA MEL  +  R     G P
Sbjct: 121 KLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLP 175

PyMOL of 1wlj

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Length = 242	Back alignment and structure

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Length = 238	Back alignment and structure

>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208	Back alignment and structure

>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Length = 314	Back alignment and structure

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Length = 186	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		569
1wlj_A		189	Interferon stimulated gene 20KDA; exoribonuclease,	99.96
2p1j_A		186	POLIII, DNA polymerase III POLC-type; structural g	99.92
2gui_A		194	DNA polymerase III epsilon subunit; DNA polymerase	99.9
1w0h_A		204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	99.89
1y97_A		238	Three prime repair exonuclease 2; TREX2, hydrolase	99.86
3mxm_B		242	Three prime repair exonuclease 1; RNAse H-like fol	99.86
1zbh_A		299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	99.86
2igi_A		180	Oligoribonuclease; RNAse, exoribonuclease, exonucl	99.86
2xri_A		224	ERI1 exoribonuclease 3; hydrolase, metal binding;	99.86
2f96_A		224	Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas	99.85
1zbu_A		349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	99.84
3u3y_B		314	Three prime repair exonuclease 1; RNAse H fold, 3'	99.83
2gbz_A		194	Oligoribonuclease; ORN, deddh, structural genomics	99.82
3cg7_A		308	CRN-4, cell death-related nuclease 4; hydrolase, a	99.82
3v9w_A		235	Ribonuclease T; DEDD nucleases family, EXO-nucleas	99.81
2qxf_A		482	Exodeoxyribonuclease I; alpha-beta domain, DNAQ su	99.76
3tr8_A		186	Oligoribonuclease; transcription, hydrolase; 2.50A	99.74
2kfn_A		605	Klenow fragment of DNA polymerase I; complex (poly	98.4
4hec_A		190	Putative uncharacterized protein; ssgcid, structur	98.29
1x9m_A		698	DNA polymerase; DNA ploymerase, N-2-acetylaminoflu	98.22
3saf_A		428	Exosome component 10; exoribonuclease, RNA exosome	97.71
4dfk_A		540	DNA polymerase I, thermostable; DNA polymerase, tr	97.61
1vk0_A		206	Hypothetical protein; homohexamer, AT5G06450, stru	97.42
2e6m_A		208	Werner syndrome ATP-dependent helicase homolog; AP	97.27
1yt3_A		375	Ribonuclease D, RNAse D; exoribonuclease, exonucle	96.94
1noy_A		388	Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas	96.59
2hbj_A		410	Exosome complex exonuclease RRP6; RNA metabolism,	96.51
1qht_A		775	Protein (DNA polymerase); archaea, hyperthermostab	96.45
3cym_A		440	Uncharacterized protein BAD_0989; structural genom	96.34
3pv8_A		592	DNA polymerase I; DNA polymerase I, protein-DNA co	96.13
2i09_A		403	Phosphopentomutase; structural genomics, target T1	96.11
3ot9_A		399	Phosphopentomutase; alkaline phosphatase like core	96.0
1s5j_A		847	DNA polymerase I; replication, disulfide bonds, tr	95.33
3k59_A		786	POL II, DNA polymerase II; protein-DNA complex, DN	95.1
3iay_A		919	DNA polymerase delta catalytic subunit; protein-DN	94.79
3qex_A		903	DNA polymerase, GP43; difluorotoluene nucleoside;	94.77
4gmj_B		285	CCR4-NOT transcription complex subunit 7; mRNA dec	93.02
2a1r_A		430	Poly(A)-specific ribonuclease PARN; DEDD, nuclease	92.28
2gv9_A		1193	DNA polymerase; polymerase alpha fold, transferase	91.09
3d45_A		507	Poly(A)-specific ribonuclease PARN; CAP analogue,	91.04

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5	Back alignment and structure

Probab=99.96  E-value=1.4e-29  Score=242.61  Aligned_cols=156  Identities=39%  Similarity=0.573  Sum_probs=134.4

Q ss_pred             CcEEEEEeceecCCCC--ceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcC
Q 008340          212 YEILALDCEMCYTNEG--LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYK  289 (569)
Q Consensus       212 ~~~vAiDcEm~~t~~g--~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~  289 (569)
                      .++++|||||+|+.+.  .+|++|++|+.+|+++|++||+|..+|++|.|++||||++||+++ +++.+|+.+|.+++ +
T Consensus         5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a-~~~~~v~~~~~~~l-~   82 (189)
T 1wlj_A            5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGA-TPFAVARLEILQLL-K   82 (189)
T ss_dssp             -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTC-EEHHHHHHHHHHHH-T
T ss_pred             CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCC-CCHHHHHHHHHHHH-C
Confidence            4699999999999765  589999999999999999999999999999999999999999997 79999999999999 7


Q ss_pred             CCEEEEeCchhhHHHHcccCCC--ccchhhhccccC--C--CCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHH
Q 008340          290 ETILVGHSLENDLLALKISHGL--VIDTAVLYKHPQ--G--GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELA  363 (569)
Q Consensus       290 ~tILVGHsL~~DL~aLki~hp~--viDT~~L~~~~~--g--~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~  363 (569)
                      +++|||||+.||+++|+..+|.  ++||+.+++..+  +  ...+++|+.||+.|||++++.++.+|+|++||+||++||
T Consensus        83 ~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~  162 (189)
T 1wlj_A           83 GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELY  162 (189)
T ss_dssp             TSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHH
Confidence            8999999999999999988874  899998754211  1  225788999999878999885323899999999999999


Q ss_pred             HHHHHc
Q 008340          364 LLKIRN  369 (569)
Q Consensus       364 ~~kl~~  369 (569)
                      +..++.
T Consensus       163 ~~l~~~  168 (189)
T 1wlj_A          163 QISQRI  168 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876554

PyMOL of 1wlj

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}	Back alignment and structure

>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*	Back alignment and structure

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5	Back alignment and structure

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5	Back alignment and structure

>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A	Back alignment and structure

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}	Back alignment and structure

>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A	Back alignment and structure

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}	Back alignment and structure

>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5	Back alignment and structure

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}	Back alignment and structure

>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*	Back alignment and structure

>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}	Back alignment and structure

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A	Back alignment and structure

>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A	Back alignment and structure

>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*	Back alignment and structure

>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}	Back alignment and structure

>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*	Back alignment and structure

>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}	Back alignment and structure

>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*	Back alignment and structure

>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A	Back alignment and structure

>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...	Back alignment and structure

>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A	Back alignment and structure

>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*	Back alignment and structure

>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5	Back alignment and structure

>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*	Back alignment and structure

>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*	Back alignment and structure

>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A	Back alignment and structure

>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}	Back alignment and structure

>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...	Back alignment and structure

>2i09_A Phosphopentomutase; structural genomics, target T1865, NYSGXRC, PSI, protein structure initiative; 2.00A {Streptococcus mutans} PDB: 3m7v_A	Back alignment and structure

>3ot9_A Phosphopentomutase; alkaline phosphatase like core domain, R phosphate, ribose-1-phosphate, glucose-1,6-bisphosphate, PH transfer, isomerase; HET: TPO G16; 1.75A {Bacillus cereus} PDB: 3m8y_A* 3m8w_A* 3m8z_A* 3twz_A* 3tx0_A 3uo0_A* 3un2_A 3un3_A* 3un5_A 3uny_A	Back alignment and structure

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1	Back alignment and structure

>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*	Back alignment and structure

>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...	Back alignment and structure

>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}	Back alignment and structure

>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A	Back alignment and structure

>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*	Back alignment and structure

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		569
d1wlja_		173	c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr	2e-22
d3b6oa1		226	c.55.3.5 (A:9-234) Three prime repair exonuclease	3e-04

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 2e-22
 Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
           E++A+DCEM       E  L R +LV++ G VL DK ++P   I DY TR SG+T + + 
Sbjct: 1   EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 60

Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG------LVIDTAVLYKHPQG 324
           G T     +    +  + K  ++VGH L++D  ALK             D  +  +    
Sbjct: 61  GATP--FAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 118

Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
              + SLRVL+++ L + IQ S  GH S EDARA MEL  +  R
Sbjct: 119 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 162

PyMOL of d1wlja_

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 226	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		569
d1wlja_		173	Interferon-stimulated gene 20 kDa protein, ISG20 {	99.96
d2guia1		174	N-terminal exonuclease domain of the epsilon subun	99.83
d3b6oa1		226	Three prime repair exonuclease 1, TREX1 {Mouse (Mu	99.78
d1y97a1		228	Three prime repair exonuclease 2, TREX2 {Human (Ho	99.74
d1w0ha_		200	Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960	99.66
d2qxfa1		467	Exonuclease I {Escherichia coli K12 (Escherichia c	99.4
d2f96a1		202	Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287	99.36
d2igia1		180	Oligoribonuclease {Escherichia coli [TaxId: 562]}	98.92
d1kfsa1		195	Exonuclease domain of prokaryotic DNA polymerase {	98.48
d1yt3a3		193	Ribonuclease D, catalytic domain {Escherichia coli	98.3
d2hbka2		292	Exosome complex exonuclease RRP6 {Baker's yeast (S	97.92
d1vk0a_		206	Hypothetical protein AT5G06450 {Thale-cress (Arabi	97.8
d2hhva1		171	Exonuclease domain of prokaryotic DNA polymerase {	97.5
d2d5ra1		252	CCR4-NOT transcription complex subunit 7, CAF1 {Hu	96.58
d1x9ma1		204	Exonuclease domain of T7 DNA polymerase {Bacteriop	96.03
d1tgoa1		347	Exonuclease domain of family B DNA polymerases {Ar	95.97
d1s5ja1		410	Exonuclease domain of family B DNA polymerases {Su	94.1
d1q8ia1		388	Exonuclease domain of family B DNA polymerases {Es	93.7
d1noya_		372	Exonuclease domain of family B DNA polymerases {Ba	84.08
d2py5a1		183	Exonuclease domain of phi29 DNA polymerase {Bacter	81.19

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-30  Score=236.35  Aligned_cols=153  Identities=39%  Similarity=0.597  Sum_probs=132.7

Q ss_pred             cEEEEEeceecCCCCc--eEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcCC
Q 008340          213 EILALDCEMCYTNEGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKE  290 (569)
Q Consensus       213 ~~vAiDcEm~~t~~g~--eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~~  290 (569)
                      ++|||||||||+.++.  .|..++||+.+|+++||+||+|..+|+++.+++||||+++++++ +++++++++|.+++ .+
T Consensus         1 ~~v~iD~EttGl~~~~~~ii~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~-~~~~~~~~~~~~~~-~~   78 (173)
T d1wlja_           1 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGA-TPFAVARLEILQLL-KG   78 (173)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTC-EEHHHHHHHHHHHH-TT
T ss_pred             CEEEEEEEcCCCCCCCCcEEEEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcC-CcHHHHHHHHHhhc-cc
Confidence            4899999999998763  47789999999999999999999999999999999999999998 79999999999999 88


Q ss_pred             CEEEEeCchhhHHHHcccCC------CccchhhhccccCCCCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHH
Q 008340          291 TILVGHSLENDLLALKISHG------LVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELAL  364 (569)
Q Consensus       291 tILVGHsL~~DL~aLki~hp------~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~  364 (569)
                      .++||||+.||+++|+...+      ..+||..+++...+...+++|+.||+.|++.+++....+|+|++||+||++||+
T Consensus        79 ~~lv~hn~~fD~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~i~~~~~~H~Al~Da~at~~l~~  158 (173)
T d1wlja_          79 KLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ  158 (173)
T ss_dssp             SEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHH
T ss_pred             ceEEeechHhHHHHHHHhhccCcccchhHHHHHHHHHhhcccCCcCHHHHHHHHhCCcccCCCCCCChHHHHHHHHHHHH
Confidence            99999999999999997433      467888877766666677899999999999999876678999999999999996


Q ss_pred             HHH
Q 008340          365 LKI  367 (569)
Q Consensus       365 ~kl  367 (569)
                      ...
T Consensus       159 ~~~  161 (173)
T d1wlja_         159 ISQ  161 (173)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

PyMOL of d1wlja_

>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}	Back information, alignment and structure

>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}	Back information, alignment and structure

>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}	Back information, alignment and structure

>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d2py5a1 c.55.3.5 (A:5-187) Exonuclease domain of phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}	Back information, alignment and structure