Citrus Sinensis ID: 008355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHcccccccccccccEEHccEEEEEccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
maeediytkdgtvdihkkpankkktgnwkACRFILGNECCERLAYYGMSTNLVNYLQKQLnqgnvtasnnvtnwsgtcyitpLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASvsglkpscdkdachptgaqTAVTFVALYLIALgtggikpcvssfgadqfdetddgerekkssFFNWFYLSINIGALVASSVLVWIQMNvgwgwgfgIPAVAMAIAVVFFFSGsrlyriqkpggsplTRIMQVIVASFRksnvvvpadksllyetadeecniqgsrklestskfkffDKAAVETqtdrvkgsadpwrlcTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLqgntmdqhmgpnfkipsaslslfdtlsvifwapiydivivpfarkltghergfTQLQRMGIGLLISIFSMVAAGILEVVRLNIVkrnnyydietipmtifwqvpqyFIVGCAEVFTFIGQleffydqaPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVttkngklgwipdnlnrghlDYFYWLLTILSVLNFLVYLWIAKWFTYkkatgran
Flexible Loop (DISEMBL)
maeediytkdgtvdihkkpankkktgnwkaCRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLyetadeecniqgsrklestskfKFFDKAAvetqtdrvkgsadpwrlCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKvttkngklgwipdnlnRGHLDYFYWLLTILSVLNFLVYLWIAKWFtykkatgran
Low Complexity Region (SEG)
MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPavamaiavvfffSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLStllvtivtkvttkNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN
Disordered region (IsUnstruct)
**************************NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGA***************SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNI**********KFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK******
Disordered Region (DISOPRED)
*****IYTKDGTVDI**********GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDK*ACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETD***REKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS*********************SKFKFFDKA******************CTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW***********
Disordered Region (DISEMBL)
MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQF********EKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV**********ADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN
Disordered Region (DISPRO)
*********DGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEEC*IQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKA*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	568	2.2.26 [Sep-21-2011]
Q9M390	570	Peptide transporter PTR1	yes	no	1.0	0.996	0.773	0.0
Q9LFB8	570	Peptide transporter PTR5	no	no	0.992	0.989	0.774	0.0
P46032	585	Peptide transporter PTR2	no	no	0.987	0.958	0.617	0.0
Q93Z20	590	Probable peptide/nitrate	no	no	0.963	0.927	0.570	0.0
Q84WG0	545	Probable peptide/nitrate	no	no	0.915	0.954	0.526	1e-172
Q8VZR7	583	Probable peptide/nitrate	no	no	0.971	0.946	0.425	1e-137
Q9SX20	596	Probable nitrite transpor	no	no	0.961	0.916	0.471	1e-137
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.968	0.938	0.437	1e-132
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.968	0.945	0.425	1e-130
Q8GXN2	589	Nitrate transporter 1.8 O	no	no	0.977	0.942	0.425	1e-129

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/570 (77%), Positives = 506/570 (88%), Gaps = 2/570 (0%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           M E+D+YT+DGTVDIHK PANK+KTGNWKACRFILGNECCERLAYYGM TNLVNYL+ +L
Sbjct: 1   MEEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRL 60

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           NQGN TA+NNVTNWSGTCYITPLIGAF+AD+Y+GR+WTIA+F  IY  GMTLLTL+ASV 
Sbjct: 61  NQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVP 120

Query: 121 GLKP-SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
           GLKP +C+ D CHP  +QTAV FVALY+IALGTGGIKPCVSSFGADQFDE D+ E+ KKS
Sbjct: 121 GLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180

Query: 180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP 239
           SFFNWFY SIN+GAL+A++VLVWIQMNVGWGWGFG+P VAM IAV FFF GSR YR+Q+P
Sbjct: 181 SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRP 240

Query: 240 GGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV 299
           GGSPLTRI QVIVA+FRK +V VP DKSLL+ETAD+E NI+GSRKL  T   KFFDKAAV
Sbjct: 241 GGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAV 300

Query: 300 ETQTDRVK-GSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTM 358
           E+Q+D +K G  +PWRLC+VTQVEELK+II LLPVWA+GIVFATVYSQMSTMFVLQGNTM
Sbjct: 301 ESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTM 360

Query: 359 DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI 418
           DQHMG NF+IPSASLSLFDT+SV+FW P+YD  I+P ARK T +ERGFTQLQRMGIGL++
Sbjct: 361 DQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVV 420

Query: 419 SIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFY 478
           SIF+M+ AG+LEVVRL+ VK +N YD + I M+IFWQ+PQY ++GCAEVFTFIGQLEFFY
Sbjct: 421 SIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFY 480

Query: 479 DQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYW 538
           DQAPDAMRSLCSALSLTTVA+GNYLST+LVT+V K+T KNGK GWIPDNLNRGHLDYF++
Sbjct: 481 DQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFY 540

Query: 539 LLTILSVLNFLVYLWIAKWFTYKKATGRAN 568
           LL  LS LNFLVYLWI+K + YKKA GRA+
Sbjct: 541 LLATLSFLNFLVYLWISKRYKYKKAVGRAH 570

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/567 (77%), Positives = 498/567 (87%), Gaps = 3/567 (0%)

Query: 3   EEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQ 62
           ++DIYTKDGT+DIHKKPANK KTG WKACRFILG ECCERLAYYGMSTNL+NYL+KQ+N 
Sbjct: 4   DKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNM 63

Query: 63  GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL 122
            NV+AS +V+NWSGTCY TPLIGAF+AD+Y+GR+WTIASF +IY  GMTLLT++ASV GL
Sbjct: 64  ENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL 123

Query: 123 KPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF 182
            P+C  + CH T  QTA+TF+ALYLIALGTGGIKPCVSSFGADQFD+TD+ E+E KSSFF
Sbjct: 124 TPTCSGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query: 183 NWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGS 242
           NWFY  IN+GA++ASSVLVWIQMNVGWGWG G+P VAMAIAVVFFF+GS  YR+QKPGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query: 243 PLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQ 302
           PLTR++QVIVAS RKS V +P D+SLLYE  D E +I GSRKLE T    FFDKAAVET+
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETE 303

Query: 303 TDRVKGSA--DPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQ 360
           +D  KG+A    W+LCTVTQVEELKA+IRLLP+WA+GIVFA+VYSQM T+FVLQGNT+DQ
Sbjct: 304 SDN-KGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362

Query: 361 HMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 420
           HMGPNFKIPSASLSLFDTLSV+FWAP+YD +IVPFARK TGHERGFTQLQR+GIGL+ISI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422

Query: 421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQ 480
           FSMV+AGILEV RLN V+ +N Y+ ETIPMTIFWQVPQYF+VGCAEVFTFIGQLEFFYDQ
Sbjct: 423 FSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482

Query: 481 APDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLL 540
           APDAMRSLCSALSLT +A GNYLST LVT+VTKVT   G+ GWI  NLN GHLDYF+WLL
Sbjct: 483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLL 542

Query: 541 TILSVLNFLVYLWIAKWFTYKKATGRA 567
             LS LNFLVYLWIAKW+TYKK TG A
Sbjct: 543 AGLSFLNFLVYLWIAKWYTYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/570 (61%), Positives = 442/570 (77%), Gaps = 9/570 (1%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           + E  +Y +DG+VD +  P  K+KTGNWKAC FILGNECCERLAYYG++ NL+ YL  +L
Sbjct: 18  LQEVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKL 77

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           +QGNV+A+ NVT W GTCY+TPLIGA LAD+Y GR+WTIA FS IY +GM+ LTL+ASV 
Sbjct: 78  HQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVP 137

Query: 121 GLKPS-CDKDAC-HPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK 178
            LKP+ C  D C   T AQ A+ F  LYLIALGTGGIKPCVSSFGADQFD+TD  ER +K
Sbjct: 138 ALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRK 197

Query: 179 SSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQK 238
           +SFFNWFY SINIGALV+SS+LVWIQ N GWG GFGIP V M +A+  FF G+ LYR QK
Sbjct: 198 ASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQK 257

Query: 239 PGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAA 298
           PGGSP+TRI QV+VASFRKS+V VP D +LLYET D+   I GSRK+E T   ++ DKAA
Sbjct: 258 PGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAA 317

Query: 299 VETQTDRVKGS-ADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNT 357
           V ++ +   G  ++ WRLCTVTQVEELK +IR+ P+WASGI+F+ VY+QMSTMFV QG  
Sbjct: 318 VISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRA 377

Query: 358 MDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLL 417
           M+  +G +F++P A+L  FDT SVI W P+YD  IVP ARK TG ++GFT++QRMGIGL 
Sbjct: 378 MNCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLF 436

Query: 418 ISIFSMVAAGILEVVRLNIVKRNNYYDIET---IPMTIFWQVPQYFIVGCAEVFTFIGQL 474
           +S+  M AA I+E++RL++   N+   +E+   +P+++ WQ+PQYFI+G AEVF FIGQL
Sbjct: 437 VSVLCMAAAAIVEIIRLHMA--NDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQL 494

Query: 475 EFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLD 534
           EFFYDQ+PDAMRSLCSAL+L T A+GNYLS+L++T+VT  TT+NG+ GWI DNLN GHLD
Sbjct: 495 EFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLD 554

Query: 535 YFYWLLTILSVLNFLVYLWIAKWFTYKKAT 564
           YF+WLL  LS++N  VY + A  +  KKA+
Sbjct: 555 YFFWLLAGLSLVNMAVYFFSAARYKQKKAS 584

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/561 (57%), Positives = 422/561 (75%), Gaps = 14/561 (2%)

Query: 9   KDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTAS 68
           +DG++DI+  P +KKKTGNWKAC FILGNECCERLAYYG++ NL+ Y   +L++ NV+A+
Sbjct: 37  EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query: 69  NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDK 128
           ++V  W GTCYITPLIGA +ADSY GR+WTIASFS IY +GM LLTL+AS+  LKP+   
Sbjct: 97  SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query: 129 DA----CHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 183
                 C P T  Q AV F  LYLIALGTGGIKPCVSSFGADQFD+TD  ER +K+SFFN
Sbjct: 157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216

Query: 184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSP 243
           WFY SINIG+ ++S++LVW+Q NVGWG GF IP V M +++  FF G+ LYR QKPGGSP
Sbjct: 217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSP 276

Query: 244 LTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQT 303
           +TR+ QV+VA++RK  + +P D S LYET ++   I GSRK++ T  +KF DKAAV ++ 
Sbjct: 277 ITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY 336

Query: 304 DRVKGS-ADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHM 362
           +   G+ ++PW+LCTVTQVEE+K +IR+ P+WASGIV++ +YSQ+ST+FV QG +M++ +
Sbjct: 337 ESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRII 396

Query: 363 GPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS 422
             +F+IP AS  +FDTL V+   PIYD  +VPF R+ TG  +G T LQRMGIGL +S+ S
Sbjct: 397 R-SFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLS 455

Query: 423 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP 482
           + AA I+E VRL + +       + + M+IFWQ+PQY ++G AEVF FIG++EFFYD++P
Sbjct: 456 IAAAAIVETVRLQLAQ-------DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESP 508

Query: 483 DAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTI 542
           DAMRS+CSAL+L   AVG+YLS+L++T+V   T   GK GW+PD+LN+GHLDYF+WLL  
Sbjct: 509 DAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVS 568

Query: 543 LSVLNFLVYLWIAKWFTYKKA 563
           L ++N  VY  I    T KKA
Sbjct: 569 LGLVNIPVYALICVKHTKKKA 589

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  603 bits (1556), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/564 (52%), Positives = 392/564 (69%), Gaps = 44/564 (7%)

Query: 3   EEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQ 62
           E  +Y +DG++DIH  P  K+ TGNWKAC FI  NECCERLAYYG++ NL+ Y   +L++
Sbjct: 21  EVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHE 80

Query: 63  GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL 122
            NV+A+ +V  W GTCYITPLIGA +AD+Y GR+WTIA FS IY  GM  LTL+ASV GL
Sbjct: 81  TNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGL 140

Query: 123 KPS-CDKDACHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
           KP+ C    C P T  Q+ V F  LYLIALGTGGIKPCVSSFGADQFD+TD  ER +K+S
Sbjct: 141 KPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKAS 200

Query: 181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
           FFNWFY +INIGA V+S+VLVWIQ N GW  GF IP V M +A + FF G+ LYR QKP 
Sbjct: 201 FFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPR 260

Query: 241 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVE 300
           GSP+T + QV+VA++RKSN+ VP D                                   
Sbjct: 261 GSPITSVCQVLVAAYRKSNLKVPEDS---------------------------------- 286

Query: 301 TQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQ 360
             TD    + +PW+LCTVTQVEE+K ++RL+P+WASGI+F+ ++SQ+ T+FV QG  M +
Sbjct: 287 --TDEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKR 344

Query: 361 HMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 420
            +G  F+IP A+L +FDT SV+   PIYD VIVP  R+ TG  +GFT+LQRMGIGL +S+
Sbjct: 345 TIG-LFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSV 403

Query: 421 FSMVAAGILEVVRLNIVKRNNYYDI-ETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYD 479
            S+  A I+E VRL + +  +  +  + +P+ IFWQ+PQYF++G A VF F+G++EFFY+
Sbjct: 404 LSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYE 463

Query: 480 QAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIP-DNLNRGHLDYFYW 538
           Q+PD+MRSLCSA +L T  +GNYLS+L++T+V  ++   GK  WIP DN+N GHLDYF+W
Sbjct: 464 QSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS---GKDCWIPSDNINNGHLDYFFW 520

Query: 539 LLTILSVLNFLVYLWIAKWFTYKK 562
           LL  L  +N  V+++ +  +T+ K
Sbjct: 521 LLVSLGSVNIPVFVFFSVKYTHMK 544

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2

 Score =  488 bits (1257), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/564 (42%), Positives = 369/564 (65%), Gaps = 12/564 (2%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           M    +YT+DGTVD+  +P    KTG W+AC F+LG E  ER+A+YG+++NLVNYL K+L
Sbjct: 1   MEAAKVYTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRL 60

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           ++  +++  NV NWSG  +ITP+ GA++ADSY+GRFWT  + S+IY LGM LLT+  +V 
Sbjct: 61  HEDTISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVK 120

Query: 121 GLKPSCDKDACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
            L+P+C+   C+   + Q    +++LY IA+G GG KP +S+FGADQFD     E+++K 
Sbjct: 121 SLRPTCENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKV 180

Query: 180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP 239
           SFFNW+  S  +GAL A+  LV+IQ N+GWG G+GIP V + +++V F+ G+  YR +  
Sbjct: 181 SFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVI 240

Query: 240 GGSPLTR-IMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAA 298
               L + ++QV +A+F+   +  P D   LYE         G  ++  T  F+F DKAA
Sbjct: 241 KTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAA 300

Query: 299 VETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTM 358
           ++T + RV         CTVT+VE  K ++ L+ +W   ++ +T+++Q++T+FV QG T+
Sbjct: 301 IKT-SSRVP--------CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTL 351

Query: 359 DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI 418
           D+ +G NF+IP+ASL  F TLS++   P+YD   VPF RK TG+ RG T LQR+G+G  I
Sbjct: 352 DRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAI 411

Query: 419 SIFSMVAAGILEVVRLNIVKRNNYYD-IETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFF 477
            I ++  A  +EV R+ ++K  +     + +PM+IFW +PQY ++G  +VF  IG LEFF
Sbjct: 412 QIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFF 471

Query: 478 YDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFY 537
           YDQ+P+ M+SL +    + + +GN+L++ LVT++ K+T+K G   WI +NLN   LDY+Y
Sbjct: 472 YDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYY 531

Query: 538 WLLTILSVLNFLVYLWIAKWFTYK 561
             L ++S++N  +++W A  + YK
Sbjct: 532 GFLVVISIVNMGLFVWAASKYVYK 555

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 262/556 (47%), Positives = 360/556 (64%), Gaps = 10/556 (1%)

Query: 14  DIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTN 73
            +H +P   K  G      FI  NE CE+LA  G   N+++YL  QL+     A+N +TN
Sbjct: 15  QLHGRPNRPK--GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72

Query: 74  WSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDK--DAC 131
           ++GT  +TPL+GAF+ADS+ GRFWTI   SIIY +GMTLLT++A +  L+P   K  + C
Sbjct: 73  FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVC 132

Query: 132 H-PTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN 190
                AQ ++ +VAL L ALG+GGI+PCV +FGADQFDE+D  +  K  ++FNW+Y  + 
Sbjct: 133 VVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMG 192

Query: 191 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQV 250
              L+A +VLVWIQ NVGWG G GIP VAM ++V+ F  G +LYR   P GSP TR++QV
Sbjct: 193 AAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQV 252

Query: 251 IVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSA 310
            VA+FRK  + + +D SLLY   + +  I    KL  T    F DKAA+ T+ D +K   
Sbjct: 253 GVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQ 312

Query: 311 DP--WRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKI 368
            P  WRL TV +VEELK++IR+ P+ ASGI+  T Y+Q  T  + Q  TM++H+  +F+I
Sbjct: 313 IPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQI 372

Query: 369 PSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI 428
           P+ S+S+F T++++     YD V V  ARK TG ERG T L RMGIG +ISI + + AG 
Sbjct: 373 PAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGF 432

Query: 429 LEVVRLNIVKRNNYYDIE--TIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMR 486
           +EV R ++   +   D     +P++  W +PQY + G AE F  IG LEFFYDQAP++MR
Sbjct: 433 VEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMR 492

Query: 487 SLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPD-NLNRGHLDYFYWLLTILSV 545
           S  +AL    +++GNY+STLLVT+V K + K     W+PD NLNRG L+YFYWL+T+L  
Sbjct: 493 STATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQA 552

Query: 546 LNFLVYLWIAKWFTYK 561
           +N + YLW AK +TYK
Sbjct: 553 VNLVYYLWCAKIYTYK 568

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/564 (43%), Positives = 371/564 (65%), Gaps = 14/564 (2%)

Query: 5   DIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN 64
           D YTKDGTVD+      + +TG WKAC F++  E  ER+AYYG+S+NLV Y+  +L+QG 
Sbjct: 8   DDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGT 67

Query: 65  VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 124
           V +SNNVTNW GT ++TP++GA++AD++ GR+ T    S IY LGM LLTL+ S+ GLKP
Sbjct: 68  VKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKP 127

Query: 125 ----SCDKDACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
               + + + C      Q AV F ALY +A+GTGG KP +S+ GADQFDE D  ++  K 
Sbjct: 128 PKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKH 187

Query: 180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP 239
           SFFNW+  SI  G   A++VLV++Q NVGW  G+G+  + +A ++  F  G+RLYR + P
Sbjct: 188 SFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLP 247

Query: 240 GGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV 299
            GSP T++ +VIVAS RK+   + +D +  YE    E   + +  + STS  +F ++A++
Sbjct: 248 MGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRASL 307

Query: 300 ETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMD 359
           +T      GS   WRLCT+T+VEE K ++++LPV     V + + +Q+ T+F+ QG T+D
Sbjct: 308 KT------GSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLD 361

Query: 360 QHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 419
           + +  NF IP ASL  F T S++    IYD V V F RKLTG+ RG T LQRMGIG+++ 
Sbjct: 362 RRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILH 421

Query: 420 IFSMVAAGILEVVRLNIVKRN--NYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFF 477
           I  M+ A I E  RL +   +   +     IP++IF  +PQY ++G A+ F  I +LEFF
Sbjct: 422 ILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFF 481

Query: 478 YDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFY 537
           YDQAP++M+SL ++ + T++AVG ++S++L++ V+++T K G+ GWI +NLN   LD +Y
Sbjct: 482 YDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGR-GWIQNNLNESRLDNYY 540

Query: 538 WLLTILSVLNFLVYLWIAKWFTYK 561
               +L++LNF+++L + +++ Y+
Sbjct: 541 MFFAVLNLLNFILFLVVIRFYEYR 564

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/564 (42%), Positives = 366/564 (64%), Gaps = 14/564 (2%)

Query: 5   DIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN 64
           D YTKDGTVD+   P  +   G WKAC F++  E  ER+AYYG+S+NL  Y+  +L+QG 
Sbjct: 8   DDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGT 67

Query: 65  VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 124
           V +SNNVTNW GT ++TP++GA++ D+ +GR+ T      IY  GM +LTL+ ++ G+KP
Sbjct: 68  VKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKP 127

Query: 125 ----SCDKDACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
               + + + C      Q AV F ALY +A+GTGG KP +S+ GADQFD  D  E+ +K 
Sbjct: 128 PECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKL 187

Query: 180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP 239
           SFFNW+  SI  G L A++VLV++Q NVGW  G+G+P + +AI++  F  G+  YR + P
Sbjct: 188 SFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLP 247

Query: 240 GGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV 299
            GSP T++ +VIVASFRK+N  +  D +  +E    E   +G+  +  T   +F D+A++
Sbjct: 248 TGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASL 307

Query: 300 ETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMD 359
           +T      G+   W LCT T+VEE K ++R+LPV     V + + +Q++T+FV QG T+D
Sbjct: 308 KT------GTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLD 361

Query: 360 QHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 419
           + +  +F IP ASLS F TLS++    +YD V V   RK TG+ RG T LQRMGIGL+  
Sbjct: 362 RKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFH 421

Query: 420 IFSMVAAGILEVVRLNIVKRNN--YYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFF 477
           I  M+ A + E  RL +   +   +     +P+TIF  +PQ+ ++G A+ F  + +LEFF
Sbjct: 422 ILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFF 481

Query: 478 YDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFY 537
           YDQAP++M+SL ++ S T++A+GN++S+ L++ V+++T K G+ GWI +NLN   LDY+Y
Sbjct: 482 YDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR-GWILNNLNESRLDYYY 540

Query: 538 WLLTILSVLNFLVYLWIAKWFTYK 561
               +L+++NF+++L + K++ Y+
Sbjct: 541 LFFAVLNLVNFVLFLVVVKFYVYR 564

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2

 Score =  463 bits (1192), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/571 (42%), Positives = 368/571 (64%), Gaps = 16/571 (2%)

Query: 5   DIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN 64
           ++ T+DG+VD H  PA +  TG W     IL N+    LA++G+  NLV +L + + Q N
Sbjct: 9   EVCTQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDN 68

Query: 65  VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 124
             A+NNV+ W+GT YI  L+GAFL+DSY GR+ T A F   +  G+ +L+L+     L+P
Sbjct: 69  AEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEP 128

Query: 125 S---CDKDACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
           S    +   C P    +T + ++++YLIALG GG +P +++FGADQFD  D  E   K +
Sbjct: 129 SGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIA 188

Query: 181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
           FF++FYL++N+G+L +++VL + +    W  GF   A +    +V F  G+  YR   P 
Sbjct: 189 FFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPR 248

Query: 241 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVE 300
            SP +R  QV+VA+ RK+ + V  ++  LY   D E    G +K+  T  F+F D+AA+ 
Sbjct: 249 ESPWSRFCQVLVAATRKAKIDVHHEELNLY---DSETQYTGDKKILHTKGFRFLDRAAIV 305

Query: 301 TQTDRVK----GSA-DPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQG 355
           T  D  +    GS  DPWRLC+VTQVEE+K ++RLLP+W   I+++ V++QM+++FV+QG
Sbjct: 306 TPDDEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQG 365

Query: 356 NTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHER--GFTQLQRMG 413
             M  ++  NF+IP++S+S FD LSV F+   Y   + P   +L   ER  G T+LQRMG
Sbjct: 366 AAMKTNI-KNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMG 424

Query: 414 IGLLISIFSMVAAGILEVVRL-NIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIG 472
           IGL+I+I +M++AGI+E+ RL N    +      +  ++IFWQVPQY ++G +EVF ++G
Sbjct: 425 IGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVG 484

Query: 473 QLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGH 532
           QLEFF  QAP  ++S  SAL + ++++GNY+S+LLV+IV K++T +   GWIP+NLN+GH
Sbjct: 485 QLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGH 544

Query: 533 LDYFYWLLTILSVLNFLVYLWIAKWFTYKKA 563
           L+ FY+LL  L+  +F+VYL  AKW+ Y K+
Sbjct: 545 LERFYFLLAGLTAADFVVYLICAKWYKYIKS 575

Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
255586505	1121	peptide transporter, putative [Ricinus c	0.996	0.504	0.852	0.0
224140377	569	predicted protein [Populus trichocarpa]	0.994	0.992	0.853	0.0
147802380	568	hypothetical protein VITISV_034788 [Viti	0.996	0.996	0.825	0.0
359481683	1120	PREDICTED: peptide transporter PTR1-like	0.994	0.504	0.825	0.0
224090929	567	predicted protein [Populus trichocarpa]	0.998	1.0	0.843	0.0
449440283	569	PREDICTED: peptide transporter PTR5-like	0.996	0.994	0.805	0.0
449511100	569	PREDICTED: LOW QUALITY PROTEIN: peptide	0.996	0.994	0.804	0.0
297820152	570	proton-dependent oligopeptide transport	1.0	0.996	0.773	0.0
15232435	570	peptide transporter PTR1 [Arabidopsis th	1.0	0.996	0.773	0.0
357468661	577	Peptide transporter PTR1 [Medicago trunc	0.989	0.974	0.782	0.0

>gi|255586505|ref|XP_002533893.1| peptide transporter, putative [Ricinus communis] gi|223526157|gb|EEF28493.1| peptide transporter, putative [Ricinus communis]

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/568 (85%), Positives = 529/568 (93%)

Query: 1    MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
            MAE+DIYTKDGT++I  +PANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQ +L
Sbjct: 554  MAEDDIYTKDGTLNIKGEPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQDRL 613

Query: 61   NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
            NQGNV ASNNVTNWSGTCYITPLIGAFLAD+Y GR+WTIASF +IY  GM LLT++AS  
Sbjct: 614  NQGNVAASNNVTNWSGTCYITPLIGAFLADAYFGRYWTIASFVMIYIFGMALLTISASAP 673

Query: 121  GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
            GLKP CDK +CHPT  QTAVTF ALYLIALGTGGIKPCVSSFGADQFDETDD E++KKSS
Sbjct: 674  GLKPFCDKHSCHPTKTQTAVTFAALYLIALGTGGIKPCVSSFGADQFDETDDDEKKKKSS 733

Query: 181  FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
            FFNWFY SINIGAL+ASSVLVWIQMNVGWGWGFG+PAVAMAIAVVFFF+GS+LYR+Q+PG
Sbjct: 734  FFNWFYFSINIGALIASSVLVWIQMNVGWGWGFGVPAVAMAIAVVFFFAGSKLYRLQRPG 793

Query: 241  GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVE 300
            GSP+TR++QVIVASFRK NV VP DKSLLYET DEE  IQGSRKLE T K KFFDKAAVE
Sbjct: 794  GSPITRLLQVIVASFRKLNVQVPDDKSLLYETTDEESQIQGSRKLEHTDKLKFFDKAAVE 853

Query: 301  TQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQ 360
            TQTD VK S +PWRLCTVTQVEELKAIIRLLPVWASGIVFATVY QMSTMFVLQGNTM+Q
Sbjct: 854  TQTDSVKDSTNPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYGQMSTMFVLQGNTMNQ 913

Query: 361  HMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 420
            HMGP+FKIPSASLSLFDTLSVIFW P+YD +IVP+ARK TG+ERGFTQLQRMGIGL+ISI
Sbjct: 914  HMGPHFKIPSASLSLFDTLSVIFWTPVYDRLIVPYARKYTGNERGFTQLQRMGIGLVISI 973

Query: 421  FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQ 480
            FSM+ AG+LEVVRLN V+RNNYYD+E IPM+IFWQVPQYF++GCAEVFTFIGQLEFFYDQ
Sbjct: 974  FSMITAGVLEVVRLNYVQRNNYYDLEYIPMSIFWQVPQYFLIGCAEVFTFIGQLEFFYDQ 1033

Query: 481  APDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLL 540
            APDAMRSLCSALSLTTVA+GNYLST+LVT+VTKVTT++GKLGWIPDNLNRGHLDYFYWLL
Sbjct: 1034 APDAMRSLCSALSLTTVALGNYLSTVLVTVVTKVTTRHGKLGWIPDNLNRGHLDYFYWLL 1093

Query: 541  TILSVLNFLVYLWIAKWFTYKKATGRAN 568
             ILS+LNF VYLWIAKW+TYKKATGRA+
Sbjct: 1094 AILSLLNFFVYLWIAKWYTYKKATGRAH 1121

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140377|ref|XP_002323559.1| predicted protein [Populus trichocarpa] gi|222868189|gb|EEF05320.1| predicted protein [Populus trichocarpa]

 Score = 1002 bits (2590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/566 (85%), Positives = 530/566 (93%), Gaps = 1/566 (0%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           MAE D YT +GTVDI   PANKKKTGNWK+CRFILGNECCERLAYYGMSTNLVNYL  +L
Sbjct: 1   MAETD-YTNNGTVDIEGNPANKKKTGNWKSCRFILGNECCERLAYYGMSTNLVNYLGDRL 59

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           NQGNV A+NNVTNWSGTCY+TPLIGAFLADSY+GR+WTIASF IIY +GMTLLTL+ASV+
Sbjct: 60  NQGNVAAANNVTNWSGTCYVTPLIGAFLADSYLGRYWTIASFVIIYIIGMTLLTLSASVT 119

Query: 121 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
           GLKPSCDKD+CHPT  QTA  FVALY+IALGTGGIKPCVSSFGADQFDETD+ ER+KKSS
Sbjct: 120 GLKPSCDKDSCHPTTGQTAACFVALYMIALGTGGIKPCVSSFGADQFDETDETERKKKSS 179

Query: 181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
           FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFG+PAVAMA+AVVFFF GS+LYRIQKPG
Sbjct: 180 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGVPAVAMAVAVVFFFLGSKLYRIQKPG 239

Query: 241 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVE 300
           GSP+TRI+QVIVASFRKSNV VPADKSLLYETA+EE  IQGSRKLE T+KFKFFDKAAV+
Sbjct: 240 GSPITRIVQVIVASFRKSNVQVPADKSLLYETAEEESQIQGSRKLEHTNKFKFFDKAAVK 299

Query: 301 TQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQ 360
           TQ D +KG   PWRLCTVTQVEELK+IIRLLPVWASGIVF+TVYSQM+TMFVLQGNTMDQ
Sbjct: 300 TQDDNIKGLTSPWRLCTVTQVEELKSIIRLLPVWASGIVFSTVYSQMNTMFVLQGNTMDQ 359

Query: 361 HMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 420
           HMGP+F+IPSASLSLFDTLSVIFWAP+YD +IVP+ARK TGHERGFTQLQRMGIGL+ISI
Sbjct: 360 HMGPHFQIPSASLSLFDTLSVIFWAPVYDRIIVPYARKFTGHERGFTQLQRMGIGLVISI 419

Query: 421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQ 480
            SM+ AGILEVVRLN V++NNYYD++ IPM+IFWQVPQYF++GCAEVFTFIGQLEFFYDQ
Sbjct: 420 VSMITAGILEVVRLNFVQKNNYYDLKYIPMSIFWQVPQYFLIGCAEVFTFIGQLEFFYDQ 479

Query: 481 APDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLL 540
           APDAMRSLCSALSLTTVA+GNYLSTLLVTIVTK+TT+ GKLGWIPDN+NRGHLDYFYWLL
Sbjct: 480 APDAMRSLCSALSLTTVALGNYLSTLLVTIVTKITTRGGKLGWIPDNMNRGHLDYFYWLL 539

Query: 541 TILSVLNFLVYLWIAKWFTYKKATGR 566
            ILS LNF++YLWI+KWFTYKKATG 
Sbjct: 540 AILSFLNFILYLWISKWFTYKKATGH 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802380|emb|CAN72572.1| hypothetical protein VITISV_034788 [Vitis vinifera]

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/566 (82%), Positives = 519/566 (91%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           MAE+D+YTKDGT++IH KPANKKKTG WKACRFILGNECCERLAYYGMSTNLVNYLQ +L
Sbjct: 1   MAEDDMYTKDGTMNIHNKPANKKKTGQWKACRFILGNECCERLAYYGMSTNLVNYLQIRL 60

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           NQGNVTASNNVTNWSGTCYITPLIGAFLAD+Y GRFW IA FSIIY  GM LLT+TAS+ 
Sbjct: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADAYFGRFWIIAIFSIIYFCGMVLLTMTASIK 120

Query: 121 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
           GL+PSCD + C PT  Q+AV F+ALYLIALGTGGIKPCVSSFGADQFD  D+ E++KKSS
Sbjct: 121 GLRPSCDDNGCDPTKLQSAVCFIALYLIALGTGGIKPCVSSFGADQFDVNDEAEKKKKSS 180

Query: 181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
           FFNWFYLSIN+GAL+ASSVLVWIQMNVGWGWGFGIPAVAMAIAVV FFSGSR+YR+QKPG
Sbjct: 181 FFNWFYLSINVGALIASSVLVWIQMNVGWGWGFGIPAVAMAIAVVSFFSGSRMYRLQKPG 240

Query: 241 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVE 300
           GSPLTRI QV+VAS RK +V VP +KSLLYET D E NI+GS KLE T K +FFDKAAVE
Sbjct: 241 GSPLTRICQVLVASTRKYHVKVPNNKSLLYETKDAESNIKGSCKLEHTEKLRFFDKAAVE 300

Query: 301 TQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQ 360
            ++D VK S +PW+LCTVTQVEELK+I+RLLPVWA+GI+F+TVYSQMSTMFVLQGNTMDQ
Sbjct: 301 VESDHVKSSNNPWKLCTVTQVEELKSILRLLPVWATGILFSTVYSQMSTMFVLQGNTMDQ 360

Query: 361 HMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 420
           HMGPNFKIPSASLSLFDTLSVIFWAP+YD +IVPFARK TGHERGFTQLQRMGIGL+ISI
Sbjct: 361 HMGPNFKIPSASLSLFDTLSVIFWAPVYDRIIVPFARKFTGHERGFTQLQRMGIGLVISI 420

Query: 421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQ 480
            SM+ AGILEV+RLN V+++NYYD+E IPM+IFWQVPQYF++GCAEVFTFIGQLEF+YDQ
Sbjct: 421 ISMIVAGILEVIRLNYVRKHNYYDLEYIPMSIFWQVPQYFLIGCAEVFTFIGQLEFYYDQ 480

Query: 481 APDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLL 540
           APDA RSLCSALSLTT A+GNYLSTLLVTIV KVTT+NGK+GWIPDN+NRGHLDYFYWLL
Sbjct: 481 APDATRSLCSALSLTTNALGNYLSTLLVTIVNKVTTRNGKMGWIPDNMNRGHLDYFYWLL 540

Query: 541 TILSVLNFLVYLWIAKWFTYKKATGR 566
            ILS+LNFLVYLWIAKW+TYKK TGR
Sbjct: 541 AILSLLNFLVYLWIAKWYTYKKVTGR 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481683|ref|XP_002274041.2| PREDICTED: peptide transporter PTR1-like [Vitis vinifera]

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/566 (82%), Positives = 519/566 (91%)

Query: 1    MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
            MAE+D+YTKDGT++IH KPANKKKTG WKACRFILGNECCERLAYYGMSTNLVNYLQ +L
Sbjct: 553  MAEDDMYTKDGTMNIHNKPANKKKTGQWKACRFILGNECCERLAYYGMSTNLVNYLQIRL 612

Query: 61   NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
            NQGNVTASNNVTNWSGTCYITPLIGAFLAD+Y GRFW IA FSIIY  GM LLT+TAS+ 
Sbjct: 613  NQGNVTASNNVTNWSGTCYITPLIGAFLADAYFGRFWIIAIFSIIYFCGMVLLTMTASIK 672

Query: 121  GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
            GL+PSCD + C PT  Q+AV F+ALYLIALGTGGIKPCVSSFGADQFD  D+ E++KKSS
Sbjct: 673  GLRPSCDDNGCDPTKLQSAVCFIALYLIALGTGGIKPCVSSFGADQFDVNDEAEKKKKSS 732

Query: 181  FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
            FFNWFYLSIN+GAL+ASSVLVWIQMNVGWGWGFGIPAVAMAIAVV FFSGSR+YR+QKPG
Sbjct: 733  FFNWFYLSINVGALIASSVLVWIQMNVGWGWGFGIPAVAMAIAVVSFFSGSRMYRLQKPG 792

Query: 241  GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVE 300
            GSPLTRI QV+VAS RK +V VP +KSLLYET D E NI+GS KLE T K +FFDKAAVE
Sbjct: 793  GSPLTRICQVLVASTRKYHVKVPNNKSLLYETKDAESNIKGSCKLEHTEKLRFFDKAAVE 852

Query: 301  TQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQ 360
             ++D VK S +PW+LCTVTQVEELK+I+RLLPVWA+GI+F+TVYSQMSTMFVLQGNTMDQ
Sbjct: 853  VESDHVKSSNNPWKLCTVTQVEELKSILRLLPVWATGILFSTVYSQMSTMFVLQGNTMDQ 912

Query: 361  HMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 420
            HMGPNFKIPSASLSLFDTLSVIFWAP+YD +IVPFARK TGHERGFTQLQRMGIGL+ISI
Sbjct: 913  HMGPNFKIPSASLSLFDTLSVIFWAPVYDRIIVPFARKFTGHERGFTQLQRMGIGLVISI 972

Query: 421  FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQ 480
             SM+ AGILEV+RLN V+++NYYD+E IPM+IFWQVPQYF++GCAEVFTFIGQLEF+YDQ
Sbjct: 973  ISMIVAGILEVIRLNYVRKHNYYDLEYIPMSIFWQVPQYFLIGCAEVFTFIGQLEFYYDQ 1032

Query: 481  APDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLL 540
            APDA RSLCSALSLTT A+GNYLSTLLVTIV KVTT+NGK+GWIPDN+NRGHLDYFYWLL
Sbjct: 1033 APDATRSLCSALSLTTNALGNYLSTLLVTIVNKVTTRNGKMGWIPDNMNRGHLDYFYWLL 1092

Query: 541  TILSVLNFLVYLWIAKWFTYKKATGR 566
             ILS+LNFLVYLWIAKW+TYKK TGR
Sbjct: 1093 AILSLLNFLVYLWIAKWYTYKKVTGR 1118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090929|ref|XP_002309120.1| predicted protein [Populus trichocarpa] gi|222855096|gb|EEE92643.1| predicted protein [Populus trichocarpa]

 Score =  985 bits (2546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/568 (84%), Positives = 520/568 (91%), Gaps = 1/568 (0%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           MA++D Y+ DGTVDI   PANKKKTGNWKA RFILGNECCERLAYYGMSTNLVNYL+ +L
Sbjct: 1   MAQDD-YSNDGTVDIKGNPANKKKTGNWKAGRFILGNECCERLAYYGMSTNLVNYLEDRL 59

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           NQGNV ASNNVTNWSGTCYITPLIGAFLADSY+GR+WTIASF +IY +GMTLLTL+ASV 
Sbjct: 60  NQGNVAASNNVTNWSGTCYITPLIGAFLADSYLGRYWTIASFVVIYIIGMTLLTLSASVP 119

Query: 121 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
           GL+ SCDKD+CHPT  QT   FVALY IALGTGGIKPCVSSFGADQFDETD+ ER+KKSS
Sbjct: 120 GLESSCDKDSCHPTTGQTTAFFVALYFIALGTGGIKPCVSSFGADQFDETDETERKKKSS 179

Query: 181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
           FFNWFYLSINIGAL+ASSVLVWIQMNVGWGWGFGIPAVAMA+AVVFFF GS+LYRIQKPG
Sbjct: 180 FFNWFYLSINIGALIASSVLVWIQMNVGWGWGFGIPAVAMAVAVVFFFLGSKLYRIQKPG 239

Query: 241 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVE 300
           GSP+TRI+QVIVASFRK +V VPADKSLLYETA+EE  IQGSRKLE T KFKFFDKAAVE
Sbjct: 240 GSPITRIVQVIVASFRKYHVQVPADKSLLYETAEEESQIQGSRKLEHTDKFKFFDKAAVE 299

Query: 301 TQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQ 360
           TQTD +K   +PWRLCTVTQVEELK+I+RLLPVWASGIVFATVYSQMS MFVLQGNTMDQ
Sbjct: 300 TQTDNIKDLTNPWRLCTVTQVEELKSIVRLLPVWASGIVFATVYSQMSIMFVLQGNTMDQ 359

Query: 361 HMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 420
           HMGP+FKIPSASLSLF  LSVIFWAP+YD +IVP+ARK TGHERGFTQLQRMGIGL+ISI
Sbjct: 360 HMGPHFKIPSASLSLFGYLSVIFWAPVYDRIIVPYARKFTGHERGFTQLQRMGIGLVISI 419

Query: 421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQ 480
            SM+ AG+LEVVRLN V+ NNYYD+E IPMTIFWQVPQYF++GCAEVFTFIGQLEFFYDQ
Sbjct: 420 VSMIVAGVLEVVRLNFVRENNYYDLEYIPMTIFWQVPQYFLIGCAEVFTFIGQLEFFYDQ 479

Query: 481 APDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLL 540
           APDAMRSLCSALSLTTVA+GNYLSTLLVTIVTKVTT+ GKLGWIPDNLNRGHLDYFYWLL
Sbjct: 480 APDAMRSLCSALSLTTVALGNYLSTLLVTIVTKVTTRGGKLGWIPDNLNRGHLDYFYWLL 539

Query: 541 TILSVLNFLVYLWIAKWFTYKKATGRAN 568
            ILS LNF  YLWI+KW+ YKKAT R +
Sbjct: 540 AILSFLNFTAYLWISKWYAYKKATERPH 567

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440283|ref|XP_004137914.1| PREDICTED: peptide transporter PTR5-like [Cucumis sativus]

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/567 (80%), Positives = 511/567 (90%), Gaps = 1/567 (0%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           MAE+DIYTKDGTVD+HKKPA KKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQ +L
Sbjct: 1   MAEDDIYTKDGTVDVHKKPAIKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQIRL 60

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           N  NVTASN+VT+WSGTCY+TPLIGAFLAD+Y+GRFWTIASFSIIY  GMTLLT+ AS+ 
Sbjct: 61  NMDNVTASNSVTSWSGTCYLTPLIGAFLADAYLGRFWTIASFSIIYAFGMTLLTMAASIP 120

Query: 121 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
           GLKPSCD   CHP+G QTA TFVALYLIALGTGGIKPCVSSFGADQFDE D+ ER+KKSS
Sbjct: 121 GLKPSCDSSGCHPSGGQTAATFVALYLIALGTGGIKPCVSSFGADQFDENDEVERKKKSS 180

Query: 181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
           FFNWFY SIN+GA++ASSVLVWIQMNVGWGWGFG+PAVAMAIAVVFFFSGS LYR+QKP 
Sbjct: 181 FFNWFYFSINVGAMIASSVLVWIQMNVGWGWGFGVPAVAMAIAVVFFFSGSSLYRLQKPA 240

Query: 241 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADE-ECNIQGSRKLESTSKFKFFDKAAV 299
           GSPLTRI+QVIVA+ RK  V VP DKSLL+ETAD+ E  I+GSRKLE T+ FKF DKA+V
Sbjct: 241 GSPLTRILQVIVAACRKHQVHVPEDKSLLHETADDIESKIEGSRKLEHTNNFKFLDKASV 300

Query: 300 ETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMD 359
           ET+ DR+KG  + WRLCTVTQVEELK+I+RLLPVWASGIVFA VYSQMSTMFVLQGNT+D
Sbjct: 301 ETENDRIKGLPNEWRLCTVTQVEELKSIVRLLPVWASGIVFAAVYSQMSTMFVLQGNTLD 360

Query: 360 QHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 419
           QH+GP+FKIPSASLS+FDT+SV+FWAP+YD +IVP ARK T +ERGFTQLQRMGIGL IS
Sbjct: 361 QHIGPSFKIPSASLSIFDTISVLFWAPVYDRLIVPIARKFTNNERGFTQLQRMGIGLAIS 420

Query: 420 IFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYD 479
           +FSMV AG LEV RLN V+ NN YD+ETIPM+IFWQVPQYF +GCAEVFTFIGQLEFFYD
Sbjct: 421 VFSMVTAGALEVARLNYVRVNNLYDVETIPMSIFWQVPQYFFIGCAEVFTFIGQLEFFYD 480

Query: 480 QAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWL 539
           QAPDAMRS+ +ALSLTTV +GNYLSTLLVTIVTKVTT++GKLGWIP NLN GHLDYF+WL
Sbjct: 481 QAPDAMRSMMAALSLTTVGLGNYLSTLLVTIVTKVTTRHGKLGWIPSNLNMGHLDYFFWL 540

Query: 540 LTILSVLNFLVYLWIAKWFTYKKATGR 566
           L ILSV+NF VYL +AK +TYK+ TG 
Sbjct: 541 LAILSVVNFFVYLLVAKCYTYKRVTGH 567

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511100|ref|XP_004163862.1| PREDICTED: LOW QUALITY PROTEIN: peptide transporter PTR1-like [Cucumis sativus]

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/567 (80%), Positives = 510/567 (89%), Gaps = 1/567 (0%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           MAE+DIYTKDGTVD+HKKPA  +KTGNWKACRFILGNECCERLAYYGMSTNLVNYLQ +L
Sbjct: 1   MAEDDIYTKDGTVDVHKKPAIXEKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQIRL 60

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           N  NVTASN+VT+WSGTCY+TPLIGAFLAD+Y+GRFWTIASFSIIY  GMTLLTL AS+ 
Sbjct: 61  NMDNVTASNSVTSWSGTCYLTPLIGAFLADAYLGRFWTIASFSIIYAFGMTLLTLAASIP 120

Query: 121 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
           GLKPSCD   CHP+G QTA TFVALYLIALGTGGIKPCVSSFGADQFDE D+ ER+KKSS
Sbjct: 121 GLKPSCDSSGCHPSGGQTAATFVALYLIALGTGGIKPCVSSFGADQFDENDEVERKKKSS 180

Query: 181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPG 240
           FFNWFY SIN+GA++ASSVLVWIQMNVGWGWGFG+PAVAMAIAVVFFFSGS LYR+QKP 
Sbjct: 181 FFNWFYFSINVGAMIASSVLVWIQMNVGWGWGFGVPAVAMAIAVVFFFSGSSLYRLQKPA 240

Query: 241 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADE-ECNIQGSRKLESTSKFKFFDKAAV 299
           GSPLTRI+QVIVA+ RK  V VP DKSLL+ETAD+ E  I+GSRKLE T+ FKF DKA+V
Sbjct: 241 GSPLTRILQVIVAACRKHQVHVPEDKSLLHETADDIESKIEGSRKLEHTNNFKFLDKASV 300

Query: 300 ETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMD 359
           ET+ DR+KG  + WRLCTVTQVEELK+I+RLLPVWASGIVFA VYSQMSTMFVLQGNT+D
Sbjct: 301 ETENDRIKGLPNEWRLCTVTQVEELKSIVRLLPVWASGIVFAAVYSQMSTMFVLQGNTLD 360

Query: 360 QHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 419
           QH+GP+FKIPSASLS+FDT+SV+FWAP+YD +IVP ARK T +ERGFTQLQRMGIGL IS
Sbjct: 361 QHIGPSFKIPSASLSIFDTISVLFWAPVYDRLIVPIARKFTNNERGFTQLQRMGIGLAIS 420

Query: 420 IFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYD 479
           +FSMV AG LEV RLN V+ NN YD+ETIPM+IFWQVPQYF +GCAEVFTFIGQLEFFYD
Sbjct: 421 VFSMVTAGALEVARLNYVRVNNLYDVETIPMSIFWQVPQYFFIGCAEVFTFIGQLEFFYD 480

Query: 480 QAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWL 539
           QAPDAMRS+ +ALSLTTV +GNYLSTLLVTIVTKVTT++GKLGWIP NLN GHLDYF+WL
Sbjct: 481 QAPDAMRSMMAALSLTTVGLGNYLSTLLVTIVTKVTTRHGKLGWIPSNLNMGHLDYFFWL 540

Query: 540 LTILSVLNFLVYLWIAKWFTYKKATGR 566
           L ILSV+NF VYL +AK +TYK+ TG 
Sbjct: 541 LAILSVVNFFVYLLVAKCYTYKRVTGH 567

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820152|ref|XP_002877959.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297323797|gb|EFH54218.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/570 (77%), Positives = 504/570 (88%), Gaps = 2/570 (0%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           M E+D+YT+DGTVDIHK PANK+KTGNWKACRFILGNECCERLAYYGM TNLVNYL+ +L
Sbjct: 1   MEEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRL 60

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           NQGN TA+NNVTNWSGTCYITPLIGAF+AD+Y+GR+WTIA+F  IY  GMTLLTL+ASV 
Sbjct: 61  NQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVP 120

Query: 121 GLKP-SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
           GLKP +C+ D CHP   QTAV FVALY+IALGTGGIKPCVSSFGADQFDE D+ E+ KKS
Sbjct: 121 GLKPGNCNADTCHPNSGQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDEAEKIKKS 180

Query: 180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP 239
           SFFNWFY SIN+GAL+A++VLVWIQMNVGWGWGFG+P VAM IAV FFF GSR YR+Q+P
Sbjct: 181 SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFLGSRFYRLQRP 240

Query: 240 GGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV 299
           GGSPLTRI QVIVA+FRK  V VP DKSLL+ETAD+E NI+GSRKL  T   KFFDKAAV
Sbjct: 241 GGSPLTRIFQVIVAAFRKMRVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAV 300

Query: 300 ETQTDRVK-GSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTM 358
           E Q+D +K G  +PWRLC+VTQVEELK+II LLPVWA+GIVFATVYSQM+TMFVLQGNTM
Sbjct: 301 EIQSDSIKDGEVNPWRLCSVTQVEELKSIISLLPVWATGIVFATVYSQMNTMFVLQGNTM 360

Query: 359 DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI 418
           DQHMG NF+IPSASLSLFDT+SV+FW P+YD  I+P ARK T +ERGFTQLQRMGIGL++
Sbjct: 361 DQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVV 420

Query: 419 SIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFY 478
           SIF+M+ AG+LEVVRL+ VK +N YD + IPM+IFWQ+PQY ++GCAEVFTFIGQLEFFY
Sbjct: 421 SIFAMITAGVLEVVRLDYVKSHNAYDQKQIPMSIFWQIPQYLLIGCAEVFTFIGQLEFFY 480

Query: 479 DQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYW 538
           DQAPDAMRSLCSALSLTTVA+GNYLST+LVT+V K+T KNGK GWIPDNLNRGHLDYF++
Sbjct: 481 DQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFY 540

Query: 539 LLTILSVLNFLVYLWIAKWFTYKKATGRAN 568
           LL  LS LNFLVYLWI+K + YKKA GRA+
Sbjct: 541 LLETLSFLNFLVYLWISKRYKYKKAVGRAH 570

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232435|ref|NP_190982.1| peptide transporter PTR1 [Arabidopsis thaliana] gi|75311821|sp|Q9M390.1|PTR1_ARATH RecName: Full=Peptide transporter PTR1 gi|13430486|gb|AAK25865.1|AF360155_1 putative peptide transport protein [Arabidopsis thaliana] gi|6822060|emb|CAB70988.1| peptide transport-like protein [Arabidopsis thaliana] gi|21280969|gb|AAM44932.1| putative peptide transport protein [Arabidopsis thaliana] gi|21537000|gb|AAM61341.1| peptide transport-like protein [Arabidopsis thaliana] gi|332645671|gb|AEE79192.1| peptide transporter PTR1 [Arabidopsis thaliana]

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/570 (77%), Positives = 506/570 (88%), Gaps = 2/570 (0%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
           M E+D+YT+DGTVDIHK PANK+KTGNWKACRFILGNECCERLAYYGM TNLVNYL+ +L
Sbjct: 1   MEEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRL 60

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           NQGN TA+NNVTNWSGTCYITPLIGAF+AD+Y+GR+WTIA+F  IY  GMTLLTL+ASV 
Sbjct: 61  NQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVP 120

Query: 121 GLKP-SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
           GLKP +C+ D CHP  +QTAV FVALY+IALGTGGIKPCVSSFGADQFDE D+ E+ KKS
Sbjct: 121 GLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180

Query: 180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP 239
           SFFNWFY SIN+GAL+A++VLVWIQMNVGWGWGFG+P VAM IAV FFF GSR YR+Q+P
Sbjct: 181 SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRP 240

Query: 240 GGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV 299
           GGSPLTRI QVIVA+FRK +V VP DKSLL+ETAD+E NI+GSRKL  T   KFFDKAAV
Sbjct: 241 GGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAV 300

Query: 300 ETQTDRVK-GSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTM 358
           E+Q+D +K G  +PWRLC+VTQVEELK+II LLPVWA+GIVFATVYSQMSTMFVLQGNTM
Sbjct: 301 ESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTM 360

Query: 359 DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI 418
           DQHMG NF+IPSASLSLFDT+SV+FW P+YD  I+P ARK T +ERGFTQLQRMGIGL++
Sbjct: 361 DQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVV 420

Query: 419 SIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFY 478
           SIF+M+ AG+LEVVRL+ VK +N YD + I M+IFWQ+PQY ++GCAEVFTFIGQLEFFY
Sbjct: 421 SIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFY 480

Query: 479 DQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYW 538
           DQAPDAMRSLCSALSLTTVA+GNYLST+LVT+V K+T KNGK GWIPDNLNRGHLDYF++
Sbjct: 481 DQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFY 540

Query: 539 LLTILSVLNFLVYLWIAKWFTYKKATGRAN 568
           LL  LS LNFLVYLWI+K + YKKA GRA+
Sbjct: 541 LLATLSFLNFLVYLWISKRYKYKKAVGRAH 570

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468661|ref|XP_003604615.1| Peptide transporter PTR1 [Medicago truncatula] gi|355505670|gb|AES86812.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/562 (78%), Positives = 498/562 (88%)

Query: 3   EEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQ 62
           E+ +YT+DGT+DIHK PANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYL+ +   
Sbjct: 13  EDGLYTEDGTIDIHKNPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLEDRYGL 72

Query: 63  GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL 122
           GN  A+N VT WSGTCYITPL+GAFLAD+Y+GR+WTIASFS IY +GM LLT +A   GL
Sbjct: 73  GNAAAANTVTTWSGTCYITPLLGAFLADAYLGRYWTIASFSSIYVIGMGLLTFSAIAPGL 132

Query: 123 KPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF 182
           KPSCD D CHPT  QTA  F+ALYLIALGTGGIKPCVSSFGADQFDE D+ ER+KKSSFF
Sbjct: 133 KPSCDTDGCHPTSGQTAALFIALYLIALGTGGIKPCVSSFGADQFDENDETERKKKSSFF 192

Query: 183 NWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGS 242
           NWFY SINIGAL+ASSVLVWIQMNVGWGWGFG+P VAM IA++FFF GSR YR+Q PGGS
Sbjct: 193 NWFYFSINIGALIASSVLVWIQMNVGWGWGFGVPGVAMVIAIIFFFIGSRWYRLQIPGGS 252

Query: 243 PLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQ 302
           PLTRI QVIVA+F+K    VP DKSLLYET D E NI+GSRKLE T++ K  DKAAVET+
Sbjct: 253 PLTRICQVIVAAFKKLGQQVPDDKSLLYETTDVESNIKGSRKLEHTNELKCLDKAAVETE 312

Query: 303 TDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHM 362
           +DR+K   +PWRLCTVTQVEELK+++RLLPVWAS I FATVYSQM TMFVLQGNTMDQH+
Sbjct: 313 SDRIKDLPNPWRLCTVTQVEELKSVVRLLPVWASLIAFATVYSQMGTMFVLQGNTMDQHI 372

Query: 363 GPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS 422
           GP FKIPSASLSLFDTLSVIFWAP+YD +IVPFARK TG+E GFTQLQR+GIGL+ISI S
Sbjct: 373 GPKFKIPSASLSLFDTLSVIFWAPVYDRLIVPFARKYTGNEHGFTQLQRIGIGLVISIIS 432

Query: 423 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP 482
           M+ AGILEV+RL+IV++NNYYD+ETIPM+IFWQVPQYF++G AEVFT IGQ+EFFY QAP
Sbjct: 433 MIVAGILEVIRLDIVRKNNYYDLETIPMSIFWQVPQYFLIGAAEVFTNIGQMEFFYGQAP 492

Query: 483 DAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTI 542
           DAMRSLC+ALSLTT A+GNY+STLLVTIVTKVTT+NG LGWIPDN+NRGHLDYFYWLLTI
Sbjct: 493 DAMRSLCAALSLTTNALGNYVSTLLVTIVTKVTTRNGSLGWIPDNMNRGHLDYFYWLLTI 552

Query: 543 LSVLNFLVYLWIAKWFTYKKAT 564
           LS++NF+VYL IAK +TYKK T
Sbjct: 553 LSLINFIVYLLIAKRYTYKKVT 574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	1.0	0.996	0.743	2.9e-238
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.992	0.989	0.738	6.2e-236
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.987	0.958	0.598	7.6e-183
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.963	0.927	0.559	2.2e-169
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.466	0.486	0.595	4.3e-156
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.959	0.914	0.454	3.9e-124
TAIR|locus:2061843	583	AT2G40460 [Arabidopsis thalian	0.971	0.946	0.411	4e-122
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.980	0.950	0.428	2.8e-121
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.966	0.943	0.415	8.8e-118
TAIR|locus:2119058	589	NRT1.8 "NITRATE TRANSPORTER 1.	0.977	0.942	0.413	3.9e-115

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2297 (813.6 bits), Expect = 2.9e-238, P = 2.9e-238
 Identities = 424/570 (74%), Positives = 486/570 (85%)

Query:     1 MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
             M E+D+YT+DGTVDIHK PANK+KTGNWKACRFILGNECCERLAYYGM TNLVNYL+ +L
Sbjct:     1 MEEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRL 60

Query:    61 NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
             NQGN TA+NNVTNWSGTCYITPLIGAF+AD+Y+GR+WTIA+F  IY  GMTLLTL+ASV 
Sbjct:    61 NQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVP 120

Query:   121 GLKP-SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
             GLKP +C+ D CHP  +QTAV FVALY+IALGTGGIKPCVSSFGADQFDE D+ E+ KKS
Sbjct:   121 GLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180

Query:   180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKP 239
             SFFNWFY SIN+GAL+A++VLVWIQMNVGWGWGFG+P             GSR YR+Q+P
Sbjct:   181 SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRP 240

Query:   240 GGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV 299
             GGSPLTRI QVIVA+FRK +V VP DKSLL+ETAD+E NI+GSRKL  T   KFFDKAAV
Sbjct:   241 GGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAV 300

Query:   300 ETQTDRVK-GSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTM 358
             E+Q+D +K G  +PWRLC+VTQVEELK+II LLPVWA+GIVFATVYSQMSTMFVLQGNTM
Sbjct:   301 ESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTM 360

Query:   359 DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI 418
             DQHMG NF+IPSASLSLFDT+SV+FW P+YD  I+P ARK T +ERGFTQLQRMGIGL++
Sbjct:   361 DQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVV 420

Query:   419 SIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFY 478
             SIF+M+ AG+LEVVRL+ VK +N YD + I M+IFWQ+PQY ++GCAEVFTFIGQLEFFY
Sbjct:   421 SIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFY 480

Query:   479 DQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGHLDYFYW 538
             DQAPDAMRSLCSALSLTTVA+GNYLS             NGK GWIPDNLNRGHLDYF++
Sbjct:   481 DQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFY 540

Query:   539 LLTILSVLNFLVYLWIAKWFTYKKATGRAN 568
             LL  LS LNFLVYLWI+K + YKKA GRA+
Sbjct:   541 LLATLSFLNFLVYLWISKRYKYKKAVGRAH 570

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 2275 (805.9 bits), Expect = 6.2e-236, P = 6.2e-236
 Identities = 419/567 (73%), Positives = 477/567 (84%)

Query:     3 EEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQ 62
             ++DIYTKDGT+DIHKKPANK KTG WKACRFILG ECCERLAYYGMSTNL+NYL+KQ+N 
Sbjct:     4 DKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNM 63

Query:    63 GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL 122
              NV+AS +V+NWSGTCY TPLIGAF+AD+Y+GR+WTIASF +IY  GMTLLT++ASV GL
Sbjct:    64 ENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL 123

Query:   123 KPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF 182
              P+C  + CH T  QTA+TF+ALYLIALGTGGIKPCVSSFGADQFD+TD+ E+E KSSFF
Sbjct:   124 TPTCSGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query:   183 NWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGS 242
             NWFY  IN+GA++ASSVLVWIQMNVGWGWG G+P            +GS  YR+QKPGGS
Sbjct:   184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query:   243 PLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQ 302
             PLTR++QVIVAS RKS V +P D+SLLYE  D E +I GSRKLE T    FFDKAAVET+
Sbjct:   244 PLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETE 303

Query:   303 TDRVKGSA--DPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQ 360
             +D  KG+A    W+LCTVTQVEELKA+IRLLP+WA+GIVFA+VYSQM T+FVLQGNT+DQ
Sbjct:   304 SDN-KGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362

Query:   361 HMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 420
             HMGPNFKIPSASLSLFDTLSV+FWAP+YD +IVPFARK TGHERGFTQLQR+GIGL+ISI
Sbjct:   363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422

Query:   421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQ 480
             FSMV+AGILEV RLN V+ +N Y+ ETIPMTIFWQVPQYF+VGCAEVFTFIGQLEFFYDQ
Sbjct:   423 FSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482

Query:   481 APDAMRSLCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGHLDYFYWLL 540
             APDAMRSLCSALSLT +A GNYLS              G+ GWI  NLN GHLDYF+WLL
Sbjct:   483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLL 542

Query:   541 TILSVLNFLVYLWIAKWFTYKKATGRA 567
               LS LNFLVYLWIAKW+TYKK TG A
Sbjct:   543 AGLSFLNFLVYLWIAKWYTYKKTTGHA 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1774 (629.5 bits), Expect = 7.6e-183, P = 7.6e-183
 Identities = 341/570 (59%), Positives = 424/570 (74%)

Query:     1 MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
             + E  +Y +DG+VD +  P  K+KTGNWKAC FILGNECCERLAYYG++ NL+ YL  +L
Sbjct:    18 LQEVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKL 77

Query:    61 NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
             +QGNV+A+ NVT W GTCY+TPLIGA LAD+Y GR+WTIA FS IY +GM+ LTL+ASV 
Sbjct:    78 HQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVP 137

Query:   121 GLKPS-CDKDAC-HPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK 178
              LKP+ C  D C   T AQ A+ F  LYLIALGTGGIKPCVSSFGADQFD+TD  ER +K
Sbjct:   138 ALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRK 197

Query:   179 SSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQK 238
             +SFFNWFY SINIGALV+SS+LVWIQ N GWG GFGIP             G+ LYR QK
Sbjct:   198 ASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQK 257

Query:   239 PGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAA 298
             PGGSP+TRI QV+VASFRKS+V VP D +LLYET D+   I GSRK+E T   ++ DKAA
Sbjct:   258 PGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAA 317

Query:   299 VETQTDRVKGS-ADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNT 357
             V ++ +   G  ++ WRLCTVTQVEELK +IR+ P+WASGI+F+ VY+QMSTMFV QG  
Sbjct:   318 VISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRA 377

Query:   358 MDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLL 417
             M+  +G +F++P A+L  FDT SVI W P+YD  IVP ARK TG ++GFT++QRMGIGL 
Sbjct:   378 MNCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLF 436

Query:   418 ISIFSMVAAGILEVVRLNIVKRNNYYDIET---IPMTIFWQVPQYFIVGCAEVFTFIGQL 474
             +S+  M AA I+E++RL++   N+   +E+   +P+++ WQ+PQYFI+G AEVF FIGQL
Sbjct:   437 VSVLCMAAAAIVEIIRLHMA--NDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQL 494

Query:   475 EFFYDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGHLD 534
             EFFYDQ+PDAMRSLCSAL+L T A+GNYLS             NG+ GWI DNLN GHLD
Sbjct:   495 EFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLD 554

Query:   535 YFYWLLTILSVLNFLVYLWIAKWFTYKKAT 564
             YF+WLL  LS++N  VY + A  +  KKA+
Sbjct:   555 YFFWLLAGLSLVNMAVYFFSAARYKQKKAS 584

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1647 (584.8 bits), Expect = 2.2e-169, P = 2.2e-169
 Identities = 314/561 (55%), Positives = 409/561 (72%)

Query:     9 KDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTAS 68
             +DG++DI+  P +KKKTGNWKAC FILGNECCERLAYYG++ NL+ Y   +L++ NV+A+
Sbjct:    37 EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query:    69 NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CD 127
             ++V  W GTCYITPLIGA +ADSY GR+WTIASFS IY +GM LLTL+AS+  LKP+ C 
Sbjct:    97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query:   128 KDA---CHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 183
               A   C P T  Q AV F  LYLIALGTGGIKPCVSSFGADQFD+TD  ER +K+SFFN
Sbjct:   157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216

Query:   184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGSP 243
             WFY SINIG+ ++S++LVW+Q NVGWG GF IP             G+ LYR QKPGGSP
Sbjct:   217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSP 276

Query:   244 LTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQT 303
             +TR+ QV+VA++RK  + +P D S LYET ++   I GSRK++ T  +KF DKAAV ++ 
Sbjct:   277 ITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY 336

Query:   304 DRVKGS-ADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHM 362
             +   G+ ++PW+LCTVTQVEE+K +IR+ P+WASGIV++ +YSQ+ST+FV QG +M++ +
Sbjct:   337 ESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRII 396

Query:   363 GPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS 422
               +F+IP AS  +FDTL V+   PIYD  +VPF R+ TG  +G T LQRMGIGL +S+ S
Sbjct:   397 R-SFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLS 455

Query:   423 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP 482
             + AA I+E VRL + +       + + M+IFWQ+PQY ++G AEVF FIG++EFFYD++P
Sbjct:   456 IAAAAIVETVRLQLAQ-------DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESP 508

Query:   483 DAMRSLCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGHLDYFYWLLTI 542
             DAMRS+CSAL+L   AVG+YLS              GK GW+PD+LN+GHLDYF+WLL  
Sbjct:   509 DAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVS 568

Query:   543 LSVLNFLVYLWIAKWFTYKKA 563
             L ++N  VY  I    T KKA
Sbjct:   569 LGLVNIPVYALICVKHTKKKA 589

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 4.3e-156, Sum P(2) = 4.3e-156
 Identities = 159/267 (59%), Positives = 193/267 (72%)

Query:     3 EEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQ 62
             E  +Y +DG++DIH  P  K+ TGNWKAC FI  NECCERLAYYG++ NL+ Y   +L++
Sbjct:    21 EVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHE 80

Query:    63 GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL 122
              NV+A+ +V  W GTCYITPLIGA +AD+Y GR+WTIA FS IY  GM  LTL+ASV GL
Sbjct:    81 TNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGL 140

Query:   123 KPS-CDKDACHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
             KP+ C    C P T  Q+ V F  LYLIALGTGGIKPCVSSFGADQFD+TD  ER +K+S
Sbjct:   141 KPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKAS 200

Query:   181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPG 240
             FFNWFY +INIGA V+S+VLVWIQ N GW  GF IP             G+ LYR QKP 
Sbjct:   201 FFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPR 260

Query:   241 GSPLTRIMQVIVASFRKSNVVVPADKS 267
             GSP+T + QV+VA++RKSN+ VP D +
Sbjct:   261 GSPITSVCQVLVAAYRKSNLKVPEDST 287

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 252/555 (45%), Positives = 346/555 (62%)

Query:    15 IHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNW 74
             +H +P N+ K G      FI  NE CE+LA  G   N+++YL  QL+     A+N +TN+
Sbjct:    16 LHGRP-NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNF 73

Query:    75 SGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CD-KDACH 132
             +GT  +TPL+GAF+ADS+ GRFWTI   SIIY +GMTLLT++A +  L+P  C  ++ C 
Sbjct:    74 AGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCV 133

Query:   133 PTG-AQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 191
                 AQ ++ +VAL L ALG+GGI+PCV +FGADQFDE+D  +  K  ++FNW+Y  +  
Sbjct:   134 VADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGA 193

Query:   192 GALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVI 251
               L+A +VLVWIQ NVGWG G GIP             G +LYR   P GSP TR++QV 
Sbjct:   194 AVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVG 253

Query:   252 VASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSAD 311
             VA+FRK  + + +D SLLY   + +  I    KL  T    F DKAA+ T+ D +K    
Sbjct:   254 VAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQI 313

Query:   312 P--WRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIP 369
             P  WRL TV +VEELK++IR+ P+ ASGI+  T Y+Q  T  + Q  TM++H+  +F+IP
Sbjct:   314 PNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIP 373

Query:   370 SASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGIL 429
             + S+S+F T++++     YD V V  ARK TG ERG T L RMGIG +ISI + + AG +
Sbjct:   374 AGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFV 433

Query:   430 EVVRLNIVKRNNYYDI-ETI-PMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRS 487
             EV R ++   +   D   TI P++  W +PQY + G AE F  IG LEFFYDQAP++MRS
Sbjct:   434 EVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRS 493

Query:   488 LCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDN-LNRGHLDYFYWLLTILSVL 546
               +AL    +++GNY+S                  W+PDN LNRG L+YFYWL+T+L  +
Sbjct:   494 TATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAV 553

Query:   547 NFLVYLWIAKWFTYK 561
             N + YLW AK +TYK
Sbjct:   554 NLVYYLWCAKIYTYK 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 232/564 (41%), Positives = 351/564 (62%)

Query:     1 MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
             M    +YT+DGTVD+  +P    KTG W+AC F+LG E  ER+A+YG+++NLVNYL K+L
Sbjct:     1 MEAAKVYTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRL 60

Query:    61 NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
             ++  +++  NV NWSG  +ITP+ GA++ADSY+GRFWT  + S+IY LGM LLT+  +V 
Sbjct:    61 HEDTISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVK 120

Query:   121 GLKPSCDKDACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
              L+P+C+   C+   + Q    +++LY IA+G GG KP +S+FGADQFD     E+++K 
Sbjct:   121 SLRPTCENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKV 180

Query:   180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKP 239
             SFFNW+  S  +GAL A+  LV+IQ N+GWG G+GIP             G+  YR +  
Sbjct:   181 SFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVI 240

Query:   240 GGSPLTR-IMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAA 298
                 L + ++QV +A+F+   +  P D   LYE         G  ++  T  F+F DKAA
Sbjct:   241 KTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAA 300

Query:   299 VETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTM 358
             ++T + RV     P   CTVT+VE  K ++ L+ +W   ++ +T+++Q++T+FV QG T+
Sbjct:   301 IKTSS-RV-----P---CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTL 351

Query:   359 DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI 418
             D+ +G NF+IP+ASL  F TLS++   P+YD   VPF RK TG+ RG T LQR+G+G  I
Sbjct:   352 DRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAI 411

Query:   419 SIFSMVAAGILEVVRLNIVKRNNYYD-IETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFF 477
              I ++  A  +EV R+ ++K  +     + +PM+IFW +PQY ++G  +VF  IG LEFF
Sbjct:   412 QIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFF 471

Query:   478 YDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGHLDYFY 537
             YDQ+P+ M+SL +    + + +GN+L+              G   WI +NLN   LDY+Y
Sbjct:   472 YDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYY 531

Query:   538 WLLTILSVLNFLVYLWIAKWFTYK 561
               L ++S++N  +++W A  + YK
Sbjct:   532 GFLVVISIVNMGLFVWAASKYVYK 555

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 245/572 (42%), Positives = 356/572 (62%)

Query:     5 DIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN 64
             D YTKDGTVD+      + +TG WKAC F++  E  ER+AYYG+S+NLV Y+  +L+QG 
Sbjct:     8 DDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGT 67

Query:    65 VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 124
             V +SNNVTNW GT ++TP++GA++AD++ GR+ T    S IY LGM LLTL+ S+ GLKP
Sbjct:    68 VKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKP 127

Query:   125 -SCDK---DACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
               C     + C      Q AV F ALY +A+GTGG KP +S+ GADQFDE D  ++  K 
Sbjct:   128 PKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKH 187

Query:   180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKP 239
             SFFNW+  SI  G   A++VLV++Q NVGW  G+G+              G+RLYR + P
Sbjct:   188 SFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLP 247

Query:   240 GGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV 299
              GSP T++ +VIVAS RK+   + +D +  YE    E   + +  + STS  +F ++A++
Sbjct:   248 MGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRASL 307

Query:   300 ETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMD 359
             +T      GS   WRLCT+T+VEE K ++++LPV     V + + +Q+ T+F+ QG T+D
Sbjct:   308 KT------GSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLD 361

Query:   360 QHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 419
             + +  NF IP ASL  F T S++    IYD V V F RKLTG+ RG T LQRMGIG+++ 
Sbjct:   362 RRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILH 421

Query:   420 IFSMVAAGILEVVRLNIVKRNN--YYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFF 477
             I  M+ A I E  RL +   +   +     IP++IF  +PQY ++G A+ F  I +LEFF
Sbjct:   422 ILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFF 481

Query:   478 YDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGHLDYFY 537
             YDQAP++M+SL ++ + T++AVG ++S              G+ GWI +NLN   LD +Y
Sbjct:   482 YDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGR-GWIQNNLNESRLDNYY 540

Query:   538 WLLTILSVLNFLVYLWIAKWFTYKK-ATGRAN 568
                 +L++LNF+++L + +++ Y+   T  AN
Sbjct:   541 MFFAVLNLLNFILFLVVIRFYEYRADVTQSAN 572

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 235/565 (41%), Positives = 349/565 (61%)

Query:     5 DIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN 64
             D YTKDGTVD+   P  +   G WKAC F++  E  ER+AYYG+S+NL  Y+  +L+QG 
Sbjct:     8 DDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGT 67

Query:    65 VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 124
             V +SNNVTNW GT ++TP++GA++ D+ +GR+ T      IY  GM +LTL+ ++ G+KP
Sbjct:    68 VKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKP 127

Query:   125 -SCDK---DACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 179
               C     + C      Q AV F ALY +A+GTGG KP +S+ GADQFD  D  E+ +K 
Sbjct:   128 PECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKL 187

Query:   180 SFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKP 239
             SFFNW+  SI  G L A++VLV++Q NVGW  G+G+P             G+  YR + P
Sbjct:   188 SFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLP 247

Query:   240 GGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAV 299
              GSP T++ +VIVASFRK+N  +  D +  +E    E   +G+  +  T   +F D+A++
Sbjct:   248 TGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASL 307

Query:   300 ETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMD 359
             +T T+        W LCT T+VEE K ++R+LPV     V + + +Q++T+FV QG T+D
Sbjct:   308 KTGTNH------KWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLD 361

Query:   360 QHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 419
             + +  +F IP ASLS F TLS++    +YD V V   RK TG+ RG T LQRMGIGL+  
Sbjct:   362 RKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFH 421

Query:   420 IFSMVAAGILEVVRLNIVKRNNYYDIET---IPMTIFWQVPQYFIVGCAEVFTFIGQLEF 476
             I  M+ A + E  RL +   +     +T   +P+TIF  +PQ+ ++G A+ F  + +LEF
Sbjct:   422 ILIMIVASVTERYRLKVAADHGLIH-QTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEF 480

Query:   477 FYDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGHLDYF 536
             FYDQAP++M+SL ++ S T++A+GN++S              G+ GWI +NLN   LDY+
Sbjct:   481 FYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR-GWILNNLNESRLDYY 539

Query:   537 YWLLTILSVLNFLVYLWIAKWFTYK 561
             Y    +L+++NF+++L + K++ Y+
Sbjct:   540 YLFFAVLNLVNFVLFLVVVKFYVYR 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 236/571 (41%), Positives = 357/571 (62%)

Query:     5 DIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN 64
             ++ T+DG+VD H  PA +  TG W     IL N+    LA++G+  NLV +L + + Q N
Sbjct:     9 EVCTQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDN 68

Query:    65 VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 124
               A+NNV+ W+GT YI  L+GAFL+DSY GR+ T A F   +  G+ +L+L+     L+P
Sbjct:    69 AEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEP 128

Query:   125 S-CD-KDA-CHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
             S C  +D+ C P    +T + ++++YLIALG GG +P +++FGADQFD  D  E   K +
Sbjct:   129 SGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIA 188

Query:   181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPG 240
             FF++FYL++N+G+L +++VL + +    W  GF                G+  YR   P 
Sbjct:   189 FFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPR 248

Query:   241 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVE 300
              SP +R  QV+VA+ RK+ + V  ++  LY   D E    G +K+  T  F+F D+AA+ 
Sbjct:   249 ESPWSRFCQVLVAATRKAKIDVHHEELNLY---DSETQYTGDKKILHTKGFRFLDRAAIV 305

Query:   301 TQTDRVK----GSA-DPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQG 355
             T  D  +    GS  DPWRLC+VTQVEE+K ++RLLP+W   I+++ V++QM+++FV+QG
Sbjct:   306 TPDDEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQG 365

Query:   356 NTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVP-FAR-KLTGHERGFTQLQRMG 413
               M  ++  NF+IP++S+S FD LSV F+   Y   + P FAR   T   +G T+LQRMG
Sbjct:   366 AAMKTNI-KNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMG 424

Query:   414 IGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIP-MTIFWQVPQYFIVGCAEVFTFIG 472
             IGL+I+I +M++AGI+E+ RL   +  +   I +   ++IFWQVPQY ++G +EVF ++G
Sbjct:   425 IGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVG 484

Query:   473 QLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGH 532
             QLEFF  QAP  ++S  SAL + ++++GNY+S             +   GWIP+NLN+GH
Sbjct:   485 QLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGH 544

Query:   533 LDYFYWLLTILSVLNFLVYLWIAKWFTYKKA 563
             L+ FY+LL  L+  +F+VYL  AKW+ Y K+
Sbjct:   545 LERFYFLLAGLTAADFVVYLICAKWYKYIKS 575

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M390	PTR1_ARATH	No assigned EC number	0.7736	1.0	0.9964	yes	no
Q9LFB8	PTR5_ARATH	No assigned EC number	0.7742	0.9929	0.9894	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00161063 hypothetical protein (569 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	568
pfam00854	372	pfam00854, PTR2, POT family	1e-107
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	9e-51
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	3e-44
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	6e-19
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	2e-12
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	3e-11
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-08
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	6e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-05

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  326 bits (837), Expect = e-107
 Identities = 149/408 (36%), Positives = 210/408 (51%), Gaps = 42/408 (10%)

Query: 96  FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGI 155
           F TI   SIIY +G  LLTL A    L P            Q A+ ++ LYLIALGTGGI
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV-----------QVALFYIGLYLIALGTGGI 49

Query: 156 KPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGI 215
           KP VS+FGADQFDET D    ++  FF+WFY SIN G+L+A+ +  ++Q NVG+  GFG+
Sbjct: 50  KPNVSAFGADQFDETQD---PRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGL 106

Query: 216 PAVAMAIAVVFFFSGSRLYR-IQKPGGSPLTR-IMQVIVASFRKSNVVVPADKSLLYETA 273
           PAV M +A++ F  GSR Y+    PGGSP T  I  +I A+ +   + +P D   LY   
Sbjct: 107 PAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWAL 166

Query: 274 DEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV 333
           ++      S+    T       + AV         +           V  L+AI+ +LP+
Sbjct: 167 EKYNKRSISQTKVHT-------RVAVIFIPLPKFWA----LFDQQGSVWLLQAILLMLPI 215

Query: 334 WASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIV 393
           WA  I+   +++Q++T+ V Q  TMD+ + P F+IP AS   F+ L+V+   PI D ++ 
Sbjct: 216 WAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVY 275

Query: 394 PFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYD----IETIP 449
           P  R     +RG T  QR G+G+ I I +   A I+E  R    +            T+P
Sbjct: 276 PLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRP---RYAAALGLTSPGWTVP 328

Query: 450 MTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTV 497
           + I W +P+ FI G        G LEF  D  P +M SL + LS    
Sbjct: 329 LFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  181 bits (462), Expect = 9e-51
 Identities = 108/490 (22%), Positives = 187/490 (38%), Gaps = 58/490 (11%)

Query: 19  PANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNV----TASNNVTNW 74
               K  G  +    I   E  ER +YYGM   L+ YL  QL  G       A+   + +
Sbjct: 11  TLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAY 70

Query: 75  SGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPT 134
               Y+TP+IG +LAD  +G   TI   +I+  +G  +L +++               P 
Sbjct: 71  GSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG------------PG 118

Query: 135 GAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGAL 194
           G      ++ L LI +GTG  KP +SS   + + + D     ++   F  FY+ INIG+L
Sbjct: 119 G-----LYIGLALIIVGTGLFKPNISSLLGELYPKDD----PRRDGGFTLFYMGINIGSL 169

Query: 195 VASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVAS 254
           +A  +   + +N GW  GFG+ AV M I +V F  G R  +    GG P           
Sbjct: 170 IAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI--GGVPDP-------NP 220

Query: 255 FRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWR 314
              + ++      ++   A     +       + + F                  A    
Sbjct: 221 LSFNFLLPVLGGLVVMILAALLTLLL------NQNTFSGVLLVISILIAIIYFAEAFRSP 274

Query: 315 LCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLS 374
                  +E + ++  +P++   ++F  +Y QM +   L  +         F++P A   
Sbjct: 275 KVF----DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQ 330

Query: 375 LFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRL 434
             +   +I ++PI   +     R      +  +   +  +GL+     +   G L ++  
Sbjct: 331 SLNPFFIILFSPILAALWTKLGRG----NKQPSTPIKFALGLI-----LAGLGFLILLLA 381

Query: 435 NIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL 494
            I        +     +++W V  Y +    E+F     L      AP A++S   A+  
Sbjct: 382 GIWFGGPSGLV-----SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWF 436

Query: 495 TTVAVGNYLS 504
            TVA G  L 
Sbjct: 437 LTVAAGQTLG 446

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  166 bits (421), Expect = 3e-44
 Identities = 126/436 (28%), Positives = 203/436 (46%), Gaps = 72/436 (16%)

Query: 45  YYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI 104
           YYGM T LV YL   L     TA+N    ++  CY+TPLIGA +ADS++G+F TI   S+
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 105 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGA 164
           +Y +G  L +L A              HP     A++ V L LIALGTGGIKPCVS+FG 
Sbjct: 63  VYVVGHALASLGAV---------PSLGHPL--HDALSLVGLALIALGTGGIKPCVSAFGG 111

Query: 165 DQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG-------WGWGFGIPA 217
           DQF+E    +   +  FF++FY +IN G+L ++ +   ++ +VG       +   FG+P 
Sbjct: 112 DQFEE---RQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPG 168

Query: 218 VAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEEC 277
           + M +A++ F  GS++Y+ + P G+ ++++M+ IV + +K                    
Sbjct: 169 ILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR------------------- 209

Query: 278 NIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASG 337
                 + E   +  + D AA +                    +   K ++R+L ++   
Sbjct: 210 ---FRTRSEDWPRLHWLDWAAPKYLIR---------------MIRSTKRLLRVLFLFIPL 251

Query: 338 IVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFAR 397
            +F  ++ Q  + + LQ   MD  +G  F I    +   + L V+   PI+D V+ P   
Sbjct: 252 PMFWALFDQQGSRWTLQATRMDGDVG-LFPIQPDQMQAVNPLLVLILVPIFDYVVYPALA 310

Query: 398 KLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVP 457
           K       FT L++M +G+L++  +   A +L+       K N     E     IF QV 
Sbjct: 311 KCGTR---FTSLRKMAVGMLLAALAFAVAALLQ------NKINPTLPEEPSASIIFLQV- 360

Query: 458 QYFIVGCAE-VFTFIG 472
                 C   V + I 
Sbjct: 361 --LNTDCTITVVSGIS 374

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 89.5 bits (222), Expect = 6e-19
 Identities = 93/475 (19%), Positives = 165/475 (34%), Gaps = 58/475 (12%)

Query: 38  ECCERLAYYGMSTNLVNYL--QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR 95
           E  ER +YYGM   L  YL  Q  L      A      +S   Y+   +G +  D   G 
Sbjct: 19  ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78

Query: 96  FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGI 155
             T+    I+  LG  +L ++     +                   F  L  IA+G+G  
Sbjct: 79  KKTMVLGGIVLMLGHFMLAMSIYPDLI-------------------FYGLGTIAVGSGLF 119

Query: 156 KPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGI 215
           K   SS     ++  D   R+     F  FY+SINIG+ ++  +   I  N G+  GF +
Sbjct: 120 KANPSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176

Query: 216 PAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADE 275
            AV M I ++ FF+G  + R       PL+        ++ K  + + A  +L++  A  
Sbjct: 177 AAVGMVIGLLTFFAGRHMLRDIGSVPDPLS----GQGKTYGKLLLALLAALALVFFCAWL 232

Query: 276 ECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWA 335
             ++  +  L  T                R+   A                +   + ++ 
Sbjct: 233 MHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVAR-------------NKMYAYIVLFL 279

Query: 336 SGIVFATVYSQM-STMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVP 394
             +VF  +Y+QM +++     N M   M     +P       +   V+  +P+  ++   
Sbjct: 280 EAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTR 338

Query: 395 FARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFW 454
             RK     +  T   +  +G+L    S +         +                + ++
Sbjct: 339 LGRK----GKDPTTPLKFTLGMLFCGASFLTF----AASIWFADAGG-------LTSPWF 383

Query: 455 QVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVT 509
            V  Y      E+      L ++   AP  +      +     A+G+ L   L T
Sbjct: 384 MVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT 438

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 22/211 (10%)

Query: 22  KKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYIT 81
            K     +A  +++  +  E  ++YGM   L+ YL  QL   +  A    + +    Y+T
Sbjct: 2   NKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVT 61

Query: 82  PLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVT 141
           P++G FLAD  +G    +   +++  +G   + L AS             HP+       
Sbjct: 62  PILGGFLADKVLGNRMAVMLGALLMAIGH--VVLGAS-----------EIHPS-----FL 103

Query: 142 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV 201
           +++L +I  G G  K  VS    + ++ TD     ++   F+  Y + N+G+++A     
Sbjct: 104 YLSLAIIVCGYGLFKSNVSCLLGELYEPTD----PRRDGGFSLMYAAGNVGSIIAPIACG 159

Query: 202 WIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 232
           + Q    W  GFG+ AV M   +V F  G+R
Sbjct: 160 YAQEEYSWAMGFGLAAVGMIAGLVIFLCGNR 190

Length = 493

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 28/202 (13%)

Query: 29  KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFL 88
           KA   I   E  ER  YYG+   +  YL KQL      +    +++S   Y    IG +L
Sbjct: 21  KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWL 80

Query: 89  ADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLI 148
            D  +G    I   +I+  +G  L+  +                  G    + ++ +  I
Sbjct: 81  GDKVLGTKRVIMLGAIVLAIGYALVAWS------------------GHDAGIVYMGMATI 122

Query: 149 ALGTGGIKPCVSSFGADQFDETD---DGEREKKSSFFNWFYLSINIGALVASSVLVWIQM 205
           A+G G  K   SS  +  +++ D   DG        F  +Y+SINIG+  +     W+  
Sbjct: 123 AVGNGLFKANPSSLLSTCYEKDDPRLDGA-------FTMYYMSINIGSFFSMLATPWLAA 175

Query: 206 NVGWGWGFGIPAVAMAIAVVFF 227
             GW   F +  V M I VV F
Sbjct: 176 KYGWSVAFALSVVGMLITVVNF 197

Length = 500

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 22/112 (19%)

Query: 405 GFTQLQRMGIGLLISIFSMVA-----AGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQY 459
                   GI  L  I            I+E V +N V             +I WQ+PQY
Sbjct: 513 DLLSQLDFGIYYLTVITENPTIDGLQLQIVEDVPVNTV-------------SILWQLPQY 559

Query: 460 FIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 511
            +    EV   +  LEF Y QAP  M+S+  AL L TVA+GN    ++V I+
Sbjct: 560 VLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN----IIVLII 607

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 26/183 (14%)

Query: 46  YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII 105
            G+ +  +  L + L      A   V+ +S    +  L+  +L+D + GR   +    ++
Sbjct: 15  RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLL 73

Query: 106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGAD 165
           + LG  LL   +S+  L                    V  +L+ LG G + P  ++  A+
Sbjct: 74  FALGSLLLAFASSLWLL-------------------LVGRFLLGLGGGALYPAAAALIAE 114

Query: 166 QFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 225
            F        +++      F     +GAL+   +   +  ++GW W F I A+   +  +
Sbjct: 115 WFPP------KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168

Query: 226 FFF 228
              
Sbjct: 169 LLL 171

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 32/196 (16%)

Query: 38  ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFW 97
           E  ER  YYG+   L  +  KQL      A      ++   Y    IG ++ D  +G   
Sbjct: 23  ELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR 82

Query: 98  TIASFSIIYCLG--MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGI 155
           TI   +I+  +G  MT ++L      LKP               + F+AL  IA+G G  
Sbjct: 83  TIVLGAIVLAIGYFMTGMSL------LKPD--------------LIFIALGTIAVGNGLF 122

Query: 156 KPCVSSFGADQFDETD---DGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 212
           K   +S  +  +   D   DG        F  FY+SINIG+L++ S+   I    G+   
Sbjct: 123 KANPASLLSKCYPPKDPRLDGA-------FTLFYMSINIGSLISLSLAPVIADKFGYSVT 175

Query: 213 FGIPAVAMAIAVVFFF 228
           + +    + IA++ +F
Sbjct: 176 YNLCGAGLIIALLVYF 191

Length = 489

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 25/186 (13%)

Query: 43  LAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASF 102
             YYG+ T L  YLQ+ L      A   ++ +     +  L+G  L+D    R   +   
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248

Query: 103 SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSF 162
            ++  LG+ LL L  S+                   A+  VAL L+  G G   P + + 
Sbjct: 249 LLLAALGLLLLALAPSL-------------------ALLLVALLLLGFGLGFAFPALLTL 289

Query: 163 GADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAI 222
            ++          E + +    F    ++G  +   +   +    G+G  F I A    +
Sbjct: 290 ASELA------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343

Query: 223 AVVFFF 228
           A +   
Sbjct: 344 AALLLL 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 39  CCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWT 98
               L    +   L  YL + L          +T +S    +   +   L+D + GR   
Sbjct: 6   FLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRV 64

Query: 99  IASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPC 158
           +    +++ LG+ LL   +S+  L                    V   L  LG G + P 
Sbjct: 65  LLIGLLLFALGLLLLLFASSLWLL-------------------LVLRVLQGLGGGALFPA 105

Query: 159 VSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAV 218
            ++  AD F        E++            +GA +   +   +    GW   F I A+
Sbjct: 106 AAALIADWF------PPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159

Query: 219 AMAIAVVFFF 228
              +A V   
Sbjct: 160 LALLAAVLAA 169

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	568
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
PRK03545	390	putative arabinose transporter; Provisional	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PRK12382	392	putative transporter; Provisional	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.94
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
PRK09952	438	shikimate transporter; Provisional	99.92
TIGR00898	505	2A0119 cation transport protein.	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
TIGR00891	405	2A0112 putative sialic acid transporter.	99.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PRK03699	394	putative transporter; Provisional	99.91
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.91
PRK03633	381	putative MFS family transporter protein; Provision	99.91
KOG0569	485	consensus Permease of the major facilitator superf	99.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
PLN00028	476	nitrate transmembrane transporter; Provisional	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
PRK15011	393	sugar efflux transporter B; Provisional	99.9
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.9
PRK09528	420	lacY galactoside permease; Reviewed	99.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
KOG0254	513	consensus Predicted transporter (major facilitator	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.89
PRK03893	496	putative sialic acid transporter; Provisional	99.89
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
PRK11043	401	putative transporter; Provisional	99.88
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.88
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.88
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.87
KOG2532	466	consensus Permease of the major facilitator superf	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.86
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.84
PRK11010	491	ampG muropeptide transporter; Validated	99.84
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.84
PRK11902	402	ampG muropeptide transporter; Reviewed	99.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.82
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.81
KOG2615	451	consensus Permease of the major facilitator superf	99.8
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.8
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.79
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.78
PRK09669	444	putative symporter YagG; Provisional	99.78
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.78
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.77
PRK10429	473	melibiose:sodium symporter; Provisional	99.77
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.76
PRK09848	448	glucuronide transporter; Provisional	99.76
TIGR00805	633	oat sodium-independent organic anion transporter.	99.76
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.74
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.74
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.74
PF13347	428	MFS_2: MFS/sugar transport protein	99.72
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.72
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.72
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.71
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.68
PTZ00207	591	hypothetical protein; Provisional	99.67
PRK11462	460	putative transporter; Provisional	99.66
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.65
KOG2533	495	consensus Permease of the major facilitator superf	99.64
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.6
PRK10642	490	proline/glycine betaine transporter; Provisional	99.58
COG2211	467	MelB Na+/melibiose symporter and related transport	99.58
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.51
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.48
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.45
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.45
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.45
PRK09952	438	shikimate transporter; Provisional	99.44
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.43
PRK05122	399	major facilitator superfamily transporter; Provisi	99.43
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.43
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.4
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
KOG2563	480	consensus Permease of the major facilitator superf	99.38
PRK03699	394	putative transporter; Provisional	99.38
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.37
PRK09528	420	lacY galactoside permease; Reviewed	99.37
PRK09874	408	drug efflux system protein MdtG; Provisional	99.37
PRK09705	393	cynX putative cyanate transporter; Provisional	99.36
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.36
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.35
TIGR00893	399	2A0114 d-galactonate transporter.	99.34
PRK03545	390	putative arabinose transporter; Provisional	99.33
PRK10489	417	enterobactin exporter EntS; Provisional	99.33
PRK12382	392	putative transporter; Provisional	99.32
PRK15075	434	citrate-proton symporter; Provisional	99.31
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.3
TIGR00891	405	2A0112 putative sialic acid transporter.	99.3
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.3
PRK11663	434	regulatory protein UhpC; Provisional	99.3
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.29
PRK11010	491	ampG muropeptide transporter; Validated	99.27
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.27
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.27
PRK03893	496	putative sialic acid transporter; Provisional	99.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.24
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.23
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.22
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.21
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.19
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.19
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.18
PLN00028	476	nitrate transmembrane transporter; Provisional	99.17
PRK10504	471	putative transporter; Provisional	99.17
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.15
PRK11902	402	ampG muropeptide transporter; Reviewed	99.14
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.13
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.13
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.12
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.12
TIGR00900	365	2A0121 H+ Antiporter protein.	99.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.11
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.1
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.08
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.07
PRK12307	426	putative sialic acid transporter; Provisional	99.05
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.05
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.05
PRK10091	382	MFS transport protein AraJ; Provisional	99.05
KOG3626	735	consensus Organic anion transporter [Secondary met	99.05
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.05
PRK10133	438	L-fucose transporter; Provisional	99.04
TIGR00895	398	2A0115 benzoate transport.	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.03
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.02
PRK10054	395	putative transporter; Provisional	99.01
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.01
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.99
PF13347	428	MFS_2: MFS/sugar transport protein	98.98
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.94
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.88
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.88
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.85
PRK09848	448	glucuronide transporter; Provisional	98.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.84
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.83
PRK11043	401	putative transporter; Provisional	98.82
TIGR00901	356	2A0125 AmpG-related permease.	98.8
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.79
TIGR00898	505	2A0119 cation transport protein.	98.78
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.77
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.76
KOG2532	466	consensus Permease of the major facilitator superf	98.74
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.7
PRK10429	473	melibiose:sodium symporter; Provisional	98.66
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.65
KOG3762	618	consensus Predicted transporter [General function	98.65
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.64
KOG0569	485	consensus Permease of the major facilitator superf	98.64
PRK09669	444	putative symporter YagG; Provisional	98.61
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.6
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.56
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.55
COG2211	467	MelB Na+/melibiose symporter and related transport	98.54
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.52
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.47
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.47
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.46
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.4
PRK11462	460	putative transporter; Provisional	98.38
KOG3762	618	consensus Predicted transporter [General function	98.32
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.31
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.3
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.29
COG0477	338	ProP Permeases of the major facilitator superfamil	98.28
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.21
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.19
KOG0637	498	consensus Sucrose transporter and related proteins	98.18
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.17
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.13
PF12832	77	MFS_1_like: MFS_1 like family	98.13
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.11
KOG2533	495	consensus Permease of the major facilitator superf	98.11
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.09
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.02
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.87
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.84
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.78
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.74
TIGR00805	633	oat sodium-independent organic anion transporter.	97.74
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.67
KOG0254	513	consensus Predicted transporter (major facilitator	97.63
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.42
PTZ00207	591	hypothetical protein; Provisional	97.39
KOG2563	480	consensus Permease of the major facilitator superf	97.2
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.04
KOG2615	451	consensus Permease of the major facilitator superf	96.92
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.8
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.79
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.67
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.51
PRK03612	521	spermidine synthase; Provisional	96.28
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.97
KOG3626	735	consensus Organic anion transporter [Secondary met	95.81
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.43
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.4
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.24
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.21
COG3202	509	ATP/ADP translocase [Energy production and convers	95.2
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.19
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.73
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.31
KOG3880	409	consensus Predicted small molecule transporter inv	93.13
KOG0637	498	consensus Sucrose transporter and related proteins	92.69
KOG3097	390	consensus Predicted membrane protein [Function unk	92.43
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	92.24
KOG3810	433	consensus Micronutrient transporters (folate trans	91.56
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.37
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.16
KOG3098	461	consensus Uncharacterized conserved protein [Funct	89.25
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	87.63
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.45
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	86.17
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	84.48

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-43  Score=376.85  Aligned_cols=530  Identities=54%  Similarity=0.917  Sum_probs=464.1

Q ss_pred             cCCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           24 KTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      .+..|++...++..+.++++++|++..++..|+.+.+|.+...+...+..+.......++.+++++|.|+||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            56679999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCC-CC---CC-CCCCC-CCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKP-SC---DK-DACHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREK  177 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~-~~---~~-~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (568)
                      ++..+|..++.+++.+|.+.. .|   .. ..|+. .......++.++.+.++|.|+..|+..++-+|++++..+.++..
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999998888887766 43   11 12454 44566788999999999999999999999999999766666666


Q ss_pred             hhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhh
Q 008355          178 KSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRK  257 (568)
Q Consensus       178 r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (568)
                      +...|+++++..++|..++-.+..++.+..||.+.|.++.+..++++++++...+.++..+|.+++..++.+++..+.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            77999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCC-CCCCCcccchhhHHHHHHHHHHHHHHHh
Q 008355          258 SNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKG-SADPWRLCTVTQVEELKAIIRLLPVWAS  336 (568)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (568)
                      ++..++.+++.+      ++.....+.....+...++|+++++...+..++ ...+|+.+..+++++.|..++.++++..
T Consensus       272 ~~~~~~~~~~~~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~  345 (571)
T KOG1237|consen  272 RKAVVSLDPEEL------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLT  345 (571)
T ss_pred             HhccCCCcchhc------cccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHH
Confidence            888877665444      111111122223456778888887766544333 6678999999999999999999999999


Q ss_pred             hhHHHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHH
Q 008355          337 GIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGL  416 (568)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  416 (568)
                      ...++..+.|+.+.+..|+..++++.++++.+|++.++.+..+..++..|+.+++..|+.+|..+++++.+++.++.+|+
T Consensus       346 ~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~  425 (571)
T KOG1237|consen  346 TIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGL  425 (571)
T ss_pred             HHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccc
Confidence            99999999999999999999999999844999999999999999999999999999999999988777789999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHH
Q 008355          417 LISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTT  496 (568)
Q Consensus       417 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~  496 (568)
                      .+..+++...+.++.+|......   ......+++.+|+++++++.|++|++.+++..++.++++|++||+.+++++.+.
T Consensus       426 ~~si~sm~~aa~vE~krl~~~~~---~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t  502 (571)
T KOG1237|consen  426 VLSILSMAVAGIVEAKRLKTAVS---LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLT  502 (571)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhh---ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHH
Confidence            99999999999999888765533   122357799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCccCCC-CCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceecccc
Q 008355          497 VAVGNYLSTLLVTIVTKVTTKNGKLGWIP-DNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKAT  564 (568)
Q Consensus       497 ~~lg~~lg~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~  564 (568)
                      ..+|+.++.+++..+...+..  ..+|++ +++|.+..+.+||+++..+.+....+.+..++++.++.+
T Consensus       503 ~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  503 VAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            999999999999987766543  347999 899999999999999999999999998888888777554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-40  Score=337.97  Aligned_cols=469  Identities=22%  Similarity=0.340  Sum_probs=358.4

Q ss_pred             CCCccCCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhC----CChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCc
Q 008355           20 ANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLN----QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR   95 (568)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Gr   95 (568)
                      ..+...+++|.++.++..++.|+++||++...+..|+..+++    +|.+++.-..++|....++.++++||++||++|+
T Consensus        12 ~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~   91 (498)
T COG3104          12 LEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT   91 (498)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            345556789999999999999999999999999999999988    9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhh
Q 008355           96 FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGER  175 (568)
Q Consensus        96 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  175 (568)
                      |++++.|.++.++|.++++...                 ......++++.++.++|.|.+.|+.+++++|++|+++++  
T Consensus        92 ~~tI~lGail~~iGh~~L~~~~-----------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr--  152 (498)
T COG3104          92 RRTIVLGAILMAIGHLVLAISS-----------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR--  152 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhccc-----------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc--
Confidence            9999999999999999998762                 023667999999999999999999999999999998876  


Q ss_pred             hhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCC--CCChhH------HH
Q 008355          176 EKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP--GGSPLT------RI  247 (568)
Q Consensus       176 ~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~  247 (568)
                        |-.+++++|++.|+|+.++|++.+++.+.+||+..|.++++...++++.+++.+++......  +..+..      ..
T Consensus       153 --rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
T COG3104         153 --RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVL  230 (498)
T ss_pred             --cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhH
Confidence              99999999999999999999999999999999999999999999999998888877654432  222211      11


Q ss_pred             HHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHH
Q 008355          248 MQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAI  327 (568)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (568)
                      .+.+......     +     ++..-..+......       ...-.... +.+..     +..++   .+.. +++||+
T Consensus       231 ~~~~~~~~~~-----~-----~~~~l~~~~~~~~~-------~~~~i~~~-~~~~~-----~~~~~---~~~~-~er~r~  283 (498)
T COG3104         231 GGLVVMILAA-----L-----LTLLLNQNTFSGVL-------LVISILIA-IIYFA-----EAFRS---PKVF-DERRRL  283 (498)
T ss_pred             HHHHHHHHHH-----H-----HHHHHHHHHHHHHH-------HHHHHHHH-HHHHH-----HHhcc---CccH-HHHHHH
Confidence            1111111110     0     00000000000000       00000000 00000     00111   1122 678899


Q ss_pred             HHHHHHHHhhhHHHhhhccccceeEeecc-cccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCC
Q 008355          328 IRLLPVWASGIVFATVYSQMSTMFVLQGN-TMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGF  406 (568)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~  406 (568)
                      +..+++++..++||..++|+++.+..+.. ..+++.. |++++++++|++|++.+++++|+.++++.|+.++.    +.+
T Consensus       284 ~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~p  358 (498)
T COG3104         284 LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQP  358 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCC
Confidence            99999999999999999999998777653 3444434 68899999999999999999999999888876654    237


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhH
Q 008355          407 TQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMR  486 (568)
Q Consensus       407 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r  486 (568)
                      +...++.+|+++++.+++++........          ++.+..+.+|+++.+++.++||.+.+|...+.+++++|+++.
T Consensus       359 s~~~KFalGl~l~g~~fl~l~~~~~~~~----------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~  428 (498)
T COG3104         359 STPIKFALGLILAGLGFLILLLAGIWFG----------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALK  428 (498)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhc----------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHH
Confidence            8888999999999999998887643311          113457889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceec
Q 008355          487 SLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK  561 (568)
Q Consensus       487 g~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~  561 (568)
                      +..+|.+.+.+..|+.+++.+.+.... +.         +..+...+..+|+..+...++..+......|+.++.
T Consensus       429 s~~ma~wfLt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~  493 (498)
T COG3104         429 SFIMAMWFLTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRM  493 (498)
T ss_pred             HHHHHHHHHHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            999999999999999888777763211 00         011223344578888888888877777777765544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=1.2e-36  Score=325.22  Aligned_cols=466  Identities=17%  Similarity=0.241  Sum_probs=331.9

Q ss_pred             CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhh-ccCchHHHHHHH
Q 008355           25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS-YMGRFWTIASFS  103 (568)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr-~~Grk~~~~~~~  103 (568)
                      ++++|.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+.....+..+++|+++|| + ||||++.++.
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~-G~r~~~~~g~   88 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL-GTKRTIVLGA   88 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhcc-chHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999999999999 6 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      +++++++++++++.+                  ....++++|+++++|.|...|+..++++|++|+++++    |.++++
T Consensus        89 ~~~~~g~~~~~~~~~------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~  146 (489)
T PRK10207         89 IVLAIGYFMTGMSLL------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFT  146 (489)
T ss_pred             HHHHHHHHHHHHhcc------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchh
Confidence            999999999987621                  1233568899999999999999999999999887522    688999


Q ss_pred             hHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeec--CCCCChhHHHHHHHHH-------H
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ--KPGGSPLTRIMQVIVA-------S  254 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~  254 (568)
                      +++++.|+|..+||.+++++.+++|||+.|++.++..+++++.+...++..++.  +|++++. |..+.+..       .
T Consensus       147 ~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~~  225 (489)
T PRK10207        147 LFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVMI  225 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999997766665555555555444332  2222222 11111100       0


Q ss_pred             Hhhcc-cccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHH
Q 008355          255 FRKSN-VVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV  333 (568)
Q Consensus       255 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (568)
                      ..... .............       .           ............            ...+ ..+++|.+....+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~-------~-----------~~i~~~~f~~~~------------~~~~-~~~r~r~~~~~~l  274 (489)
T PRK10207        226 FVCAWLMHNVEVANLVLIV-------L-----------SIVVTIIFFREA------------FKLD-KTGRNKMFVAFVL  274 (489)
T ss_pred             HHHHHHHhhhhHHHHHHHH-------H-----------HHHHHHHHHHHH------------hcCC-HHHHHHHHHHHHH
Confidence            00000 0000000000000       0           000000000000            0001 1234555555666


Q ss_pred             HHhhhHHHhhhccccceeEeecc-cccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHH
Q 008355          334 WASGIVFATVYSQMSTMFVLQGN-TMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRM  412 (568)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~  412 (568)
                      +....++|..+.|....+..+.. ..+.... |+.+++++++++|++.+++..|+.+++    .+|.++|+..+++..++
T Consensus       275 ~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~~~~~~~~k~  349 (489)
T PRK10207        275 MLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGI----YTHLGSKGKDLSMPMKF  349 (489)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCCCCCCcHHHH
Confidence            67788889999988766544432 3444445 778889999999999999999998774    44444444347888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHH
Q 008355          413 GIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL  492 (568)
Q Consensus       413 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~  492 (568)
                      .+|+++.+++++.+.......         .+. ....+.+++++.+++.++||++.+|..++++.+.+|++++|.++|+
T Consensus       350 ~~G~~l~~~~~~~~~~~~~~~---------~~~-~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~  419 (489)
T PRK10207        350 TLGMFLCSLGFLTAAAAGMWF---------ADA-QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGM  419 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh---------cCC-CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHH
Confidence            999999999987654332110         000 1124678888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCC-ccchhHHHHHHHHHHHHHHHHHHHHHhhhceecccccCC
Q 008355          493 SLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNL-NRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRA  567 (568)
Q Consensus       493 ~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~~~  567 (568)
                      +++..++|+.+|..+.........     ..  |.. ..+.+..+|..+++.+++..++++.+.|+.++...++++
T Consensus       420 ~~l~~~ig~~lg~~l~~~~~~~~~-----~~--~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  488 (489)
T PRK10207        420 WFLTQAAAFLLGGYVATFTAVPDN-----IT--DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPES  488 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccc-----cc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999888775421000     00  011 123456788888888888888888878877665444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=4.3e-36  Score=320.69  Aligned_cols=453  Identities=21%  Similarity=0.280  Sum_probs=328.8

Q ss_pred             CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHH--hCCChhhhhhhHHHHHHHHHhhhhhHHHHhhh-ccCchHHHHH
Q 008355           25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQ--LNQGNVTASNNVTNWSGTCYITPLIGAFLADS-YMGRFWTIAS  101 (568)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr-~~Grk~~~~~  101 (568)
                      .+++|.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++|| + |||+++.+
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~-G~~~~l~~   84 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW-GTKKTMVL   84 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc-chHHHHHH
Confidence            45788899999999999999999999999999987  99999999999999999999999999999999 6 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhh
Q 008355          102 FSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF  181 (568)
Q Consensus       102 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (568)
                      +.++.+++.++++++                   .+.+.++++|.+.|+|.|...|+..++++|++|+++++   +|+++
T Consensus        85 ~~~~~~~g~~~~~~~-------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~  142 (475)
T TIGR00924        85 GGIVLMLGHFMLAMS-------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGG  142 (475)
T ss_pred             HHHHHHHHHHHHHhc-------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccce
Confidence            999999999888876                   34667888999999999999999999999999876421   18889


Q ss_pred             hhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhH----HHH-------HH
Q 008355          182 FNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLT----RIM-------QV  250 (568)
Q Consensus       182 ~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~  250 (568)
                      +++++++.|+|..+||.+++++.+.+||++.|++.++..+++++.+...++..++.++++++.+    +..       ..
T Consensus       143 ~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (475)
T TIGR00924       143 FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAA  222 (475)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999887666666555555544433222221110    000       00


Q ss_pred             HHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHH
Q 008355          251 IVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRL  330 (568)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (568)
                      +....+...............                    .........+....   ..+|.    . +..++++....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~---~~~~~----~-~~~~~~~~~~~  274 (475)
T TIGR00924       223 LALVFFCAWLMHHVVIANILL--------------------MTVTLAVIIFFFRL---AFKPR----L-DAVARNKMYAY  274 (475)
T ss_pred             HHHHHHHHHHHhccHHHHHHH--------------------HHHHHHHHHHHHHH---HHhcc----C-CHHHHhHHHHH
Confidence            001111000000000000000                    00000000000000   00000    0 11223444456


Q ss_pred             HHHHHhhhHHHhhhccccceeEee-cccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCch
Q 008355          331 LPVWASGIVFATVYSQMSTMFVLQ-GNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQL  409 (568)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~  409 (568)
                      +.++++..++|..+.|+.+.+..+ ...++.+.+ ++++|+++++++|++.+++++|+.++++.++.||    .++++..
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~  349 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTP  349 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcH
Confidence            777888889999999988865433 334566666 7889999999999999999999988754444443    2225667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHH
Q 008355          410 QRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLC  489 (568)
Q Consensus       410 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~  489 (568)
                      .++.+|+++.+++++.+++....           .++..+.+++|+++.+++.++||.+..|..++++++.+|+++||++
T Consensus       350 ~k~~~G~~l~~~~~~~~~~~~~~-----------~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~  418 (475)
T TIGR00924       350 LKFTLGMLFCGASFLTFAASIWF-----------ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQM  418 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-----------cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHH
Confidence            78899999999999887765311           0112346889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhcee
Q 008355          490 SALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY  560 (568)
Q Consensus       490 ~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~  560 (568)
                      +|++.+...+|+.+++.+.....+..      +          ...+|...++++++..++.+++.|+.+|
T Consensus       419 ~g~~~l~~~~g~~l~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~k  473 (475)
T TIGR00924       419 LGMWFLAQAMGSLLGGYLATFGAVPQ------G----------VTGVFGKIGLVTLLVGVVMALMVPWLNR  473 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc------c----------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988887653211      1          2346777777777777777777776554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=7.3e-36  Score=314.47  Aligned_cols=474  Identities=17%  Similarity=0.252  Sum_probs=326.3

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      +|+|.++.+++.++.+++++|++..+++.|+++++|++..+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            37888999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++.++++...                  .+...++++..+..+|.|...++.+++++|++|+++++    |.++++++
T Consensus        86 ~~lg~lll~~~~------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~  143 (493)
T PRK15462         86 MAIGHVVLGASE------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLM  143 (493)
T ss_pred             HHHHHHHHHHhh------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHH
Confidence            999887665431                  11233555566677888888899999999999986422    99999999


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCC-CCChh--HHHHHHHHHHHhhccccc
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP-GGSPL--TRIMQVIVASFRKSNVVV  262 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~  262 (568)
                      |+..|+|+.++|.+.+++.+.+||++.|.+.++..+++++.++..++...+... ++++.  ++...........-....
T Consensus       144 Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (493)
T PRK15462        144 YAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVAT  223 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887777776666555544332211 11111  110000000000000000


Q ss_pred             CCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHh
Q 008355          263 PADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFAT  342 (568)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (568)
                      +.-...... ++........        .......-+....      ..     . .+.++++|+...+.++....+||.
T Consensus       224 ~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~------~~-----~-~~~~er~r~~~~~~l~~~~~~Fw~  282 (493)
T PRK15462        224 PALITVLFW-KEWSVYALIV--------ATIIGLGVLAKIY------RK-----A-ENQKQRKELGLIVTLTFFSMLFWA  282 (493)
T ss_pred             HHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHH------Hh-----c-CCHHHHhhHHHHHHHHHHHHHHHH
Confidence            000000000 0000000000        0000000000000      00     0 112567888888999999999999


Q ss_pred             hhccccceeEeec-ccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 008355          343 VYSQMSTMFVLQG-NTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIF  421 (568)
Q Consensus       343 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~  421 (568)
                      .++|.++.+.... .++++++. |+++|+++++++|++.+++++|+..+++.+..+|    ++.++...|+.+|++++++
T Consensus       283 ~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~  357 (493)
T PRK15462        283 FAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSA  357 (493)
T ss_pred             HHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHH
Confidence            9999998665543 56777877 8999999999999999999999999865544332    2237888899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHH-HHHH
Q 008355          422 SMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTT-VAVG  500 (568)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~lg  500 (568)
                      +++++.......          + +....+.+|++..+++.++||.+.+|...+.+.+++|++.||+.+|++.+. ..+|
T Consensus       358 ~f~~l~~~~~~~----------~-~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~  426 (493)
T PRK15462        358 GFCILTLSARWS----------A-MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIA  426 (493)
T ss_pred             HHHHHHHHHhhc----------C-CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            998887654220          0 112367888999999999999999999999999999999999999999874 4688


Q ss_pred             HHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHH--HHHHHHHhhhceecc
Q 008355          501 NYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLN--FLVYLWIAKWFTYKK  562 (568)
Q Consensus       501 ~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~--~v~~~~~~~~~~~~~  562 (568)
                      +.+++.+......... +.+. -.  .-+...+..+|...+...++.  ++.+.+++...|.|+
T Consensus       427 ~~~~g~~~~~~~~~~~-~~~~-~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
T PRK15462        427 NYLAGVIADQTSQASF-DASG-AI--NYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRN  486 (493)
T ss_pred             HHHHHHHHHHhccccC-Cccc-cc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8777777665422100 0000 00  001124556677777666554  444445555444443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=3.1e-34  Score=308.08  Aligned_cols=457  Identities=18%  Similarity=0.271  Sum_probs=322.7

Q ss_pred             CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHH
Q 008355           25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI  104 (568)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~  104 (568)
                      .+++|.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+........+++|+++||++|||+++..+.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999888888877777788999999993399999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008355          105 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW  184 (568)
Q Consensus       105 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (568)
                      +.+++..+++++.                  .+...++++|+++|+|.|...|+..++++|++|+++++    |.+++++
T Consensus        97 ~~~ig~~l~~~~~------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~  154 (500)
T PRK09584         97 VLAIGYALVAWSG------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTM  154 (500)
T ss_pred             HHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchH
Confidence            9999988887751                  13455778899999999999999999999999876422    6678999


Q ss_pred             HHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeec--CCCCChhH--HHH----HHHHHHHh
Q 008355          185 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ--KPGGSPLT--RIM----QVIVASFR  256 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~----~~~~~~~~  256 (568)
                      ++++.++|+.+||.+++++.+++||++.|++.++..+++++.+...++..+++  ++++++.+  ...    .+......
T Consensus       155 ~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (500)
T PRK09584        155 YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAI  234 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998876666655544443333322  22222221  111    11111111


Q ss_pred             hc-ccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 008355          257 KS-NVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWA  335 (568)
Q Consensus       257 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (568)
                      .. ....++.......                     ......... .         +++..+.+..++++.+..+.+++
T Consensus       235 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~  283 (500)
T PRK09584        235 ATWLLHNQEIARMALG---------------------VVALGIVVI-F---------GKEAFAMKGAARRKMIVAFILML  283 (500)
T ss_pred             HHHHHhcchHHHHHHH---------------------HHHHHHHHH-H---------HHHHhhcCHHHHHHHHHHHHHHH
Confidence            00 0000000000000                     000000000 0         00000001134555555666778


Q ss_pred             hhhHHHhhhccccceeEeecc-cccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHH
Q 008355          336 SGIVFATVYSQMSTMFVLQGN-TMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGI  414 (568)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~  414 (568)
                      ...++|..+.|++..+..+.. ..+.+.. ++.+++++++++|++.+++++|+.+++    .+|+.+|   .++.+++.+
T Consensus       284 ~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~  355 (500)
T PRK09584        284 EAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAI  355 (500)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHH
Confidence            888999999999988776542 3444555 788899999999999999999998884    3444444   567889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHH
Q 008355          415 GLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL  494 (568)
Q Consensus       415 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  494 (568)
                      |+++++++++.+......           .++....+.+++++.+++.++||++..|...+++.+.+|+++||+++|++.
T Consensus       356 G~~l~~l~f~~l~~~~~~-----------~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~  424 (500)
T PRK09584        356 GMVLCSGAFLVLPLGAKF-----------ANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF  424 (500)
T ss_pred             HHHHHHHHHHHHHHHHHh-----------cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            999999999987765421           011223567789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCC-ccchhHHHHHHHHHHHHHHHHHHHHHhhhcee
Q 008355          495 TTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNL-NRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY  560 (568)
Q Consensus       495 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~  560 (568)
                      +...+|+.+++.+........       -..|.. ..+++..+|..+++.+++..++++...|+.++
T Consensus       425 l~~a~g~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        425 LTTAGAALIAGYVANLMAVPD-------NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             HHHHHHHHHHHHHHHHhcccc-------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877777765332100       000111 12336678888888887777666666665543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.96  E-value=3.8e-26  Score=248.82  Aligned_cols=334  Identities=31%  Similarity=0.620  Sum_probs=267.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008355           43 LAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL  122 (568)
Q Consensus        43 ~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~  122 (568)
                      ++||++...+..|+.+.+|++...+..+...+.....+.++++|+++|+++||++++.++.++..+|..++++.+. |..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999988887532 210


Q ss_pred             CCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhh
Q 008355          123 KPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVW  202 (568)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~  202 (568)
                                .........+++..+.++|.|++.|+..++.+|+++++++   .+|.+++.++++++|+|+.+++++.++
T Consensus        80 ----------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~  146 (654)
T TIGR00926        80 ----------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPI  146 (654)
T ss_pred             ----------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0012234577888999999999999999999999986542   238899999999999999999999998


Q ss_pred             eecc-------ccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhh
Q 008355          203 IQMN-------VGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADE  275 (568)
Q Consensus       203 i~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (568)
                      +.+.       .+|...|.++++..+++++++...++++++.+|.+++..+..+++....+++....++.          
T Consensus       147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~----------  216 (654)
T TIGR00926       147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH----------  216 (654)
T ss_pred             HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc----------
Confidence            8744       36999999999999999888887777777777777777777777766665432111100          


Q ss_pred             hhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeec
Q 008355          276 ECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQG  355 (568)
Q Consensus       276 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (568)
                                   ....|.|.+...               ..++.+++.|++++.+.+++...++|..+.|..+.+..|.
T Consensus       217 -------------~~~~~ld~a~~~---------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa  268 (654)
T TIGR00926       217 -------------WPLHWLDYAKDK---------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQA  268 (654)
T ss_pred             -------------cchhHHHHhccc---------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence                         001233222110               1123467789999999999999999999999999888887


Q ss_pred             ccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 008355          356 NTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVV  432 (568)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~  432 (568)
                      ..++.+++ ++.+++++++.++.+.++++.|+.++.+.|..+|.+..   +++..++++|+++++++++++...+..
T Consensus       269 ~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~  341 (654)
T TIGR00926       269 TRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLK  341 (654)
T ss_pred             HHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776 78899999999999999999999998777777665433   788999999999999999988887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=1.1e-25  Score=248.02  Aligned_cols=155  Identities=15%  Similarity=0.092  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 008355           49 STNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDK  128 (568)
Q Consensus        49 ~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  128 (568)
                      ...+.+++.+++|++..+.+++.+++.++.+++.+++|+++||+ |||++++++.++.+++.++++++            
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa------------  252 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV------------  252 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH------------
Confidence            44555677888999999999999999999999999999999999 99999999999999998888877            


Q ss_pred             CCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc--
Q 008355          129 DACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN--  206 (568)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~--  206 (568)
                             .+.+.++++|++.|+|.|+..|+..++++|.+|++.      |++.+++..+...+|.++++.++..+...  
T Consensus       253 -------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       253 -------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                   458889999999999999999999999999999988      99999999999999999998876554332  


Q ss_pred             -----------ccchhhhhHHHHHHHHHHHHHHh
Q 008355          207 -----------VGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       207 -----------~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                                 .+||+.|++.++..++++++.++
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                       36899888877666555544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=2.5e-25  Score=233.37  Aligned_cols=380  Identities=10%  Similarity=0.026  Sum_probs=250.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      +|++..+....++..++.....+.+|.|+++++|.|..+.|++.+++.+...+++++.|+++||+ |||+++..+.++++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence            45678888889999999888889999999999999999999999999999999999999999999 99999999998888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+.+.++......           ...+...+++.|+++|++.+...+....++.|.+|+++      |+++++++..
T Consensus        93 ~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~  155 (399)
T PRK05122         93 LSGLLYLLAGLLAAW-----------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGI  155 (399)
T ss_pred             HHHHHHHHhhhhhcc-----------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhh
Confidence            776665544211100           00246678999999999999999999999999999888      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcch
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS  267 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (568)
                      ..++|..++|.+++.+.+.+||++.+++.++..++..+..   ++. ++.++++++..                      
T Consensus       156 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~----------------------  209 (399)
T PRK05122        156 ATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RPR-PAVPPVKGERL----------------------  209 (399)
T ss_pred             hhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hcC-CCCCCCCccch----------------------
Confidence            9999999999999999999999998877655443332221   111 00000000000                      


Q ss_pred             hhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccc
Q 008355          268 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQM  347 (568)
Q Consensus       268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (568)
                                                                  +++    +..++.+...  .........+.......
T Consensus       210 --------------------------------------------~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~  239 (399)
T PRK05122        210 --------------------------------------------PFR----RVLGRVWPYG--MGLALASIGFGTIATFI  239 (399)
T ss_pred             --------------------------------------------hHH----HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence                                                        000    0000000000  00011111111111111


Q ss_pred             cceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008355          348 STMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAG  427 (568)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  427 (568)
                      +.++..+  +.. .        .........+..++..++.++    +.+|       .++++.+..+.++.+++.+...
T Consensus       240 ~~~~~~~--~~~-~--------~~~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T PRK05122        240 TLYYAAR--GWD-G--------AALALTLFGVAFVGARLLFGN----LINR-------LGGLRVAIVSLLVEILGLLLLW  297 (399)
T ss_pred             HHHHHHc--ccc-c--------chHHHHHHHHHHHHHHHHHHH----HHHH-------hccHHHHHHHHHHHHHHHHHHH
Confidence            1111111  000 0        011111122222333333333    4444       3333456667677777665554


Q ss_pred             HHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008355          428 ILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLL  507 (568)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l  507 (568)
                      ..+                    +.+.++...++.|++.+...|.......+..|++.||++.|+++....+|..+++.+
T Consensus       298 ~~~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  357 (399)
T PRK05122        298 LAP--------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPL  357 (399)
T ss_pred             Hhc--------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332                    444555667888888888888888888899999999999999999999999999999


Q ss_pred             HHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhce
Q 008355          508 VTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT  559 (568)
Q Consensus       508 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~  559 (568)
                      .+.+.+..                +++..|++.+++++++.+..++..++++
T Consensus       358 ~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        358 AGLVASWF----------------GYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            88876532                2355677778888887766665544433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.95  E-value=1.4e-25  Score=234.54  Aligned_cols=381  Identities=11%  Similarity=0.044  Sum_probs=244.6

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      |..++.+.+..++.....+...+.+| .+.+++|.|..+.|+..+.+.++..++.++.|+++||+ |||+++..+.++.+
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            44455556655655455444333344 56788999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++++.++++                   ++.+.+++.|+++|++.+...+...+++.|++|+++      |+++++++..
T Consensus        86 ~~~~~~~~~-------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~  140 (390)
T PRK03545         86 ASHVLSALA-------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLAT  140 (390)
T ss_pred             HHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHH
Confidence            999988887                   568889999999999999989999999999999988      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcch
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS  267 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (568)
                      +.++|..++|.+++.+.+..|||+.|++.++..++..+..+...++.++  +++++.++    ...              
T Consensus       141 ~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~----~~~--------------  200 (390)
T PRK03545        141 GTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS--EHSGSLKS----LPL--------------  200 (390)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCcchHHH----HHH--------------
Confidence            9999999999999999888999999999887665554443332221110  00000000    000              


Q ss_pred             hhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHH-HHHHHhhhHHHhhhcc
Q 008355          268 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRL-LPVWASGIVFATVYSQ  346 (568)
Q Consensus       268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  346 (568)
                                                                          ..++ +..... ..........+.....
T Consensus       201 ----------------------------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~  227 (390)
T PRK03545        201 ----------------------------------------------------LFRR-PALVSLYLLTVVVVTAHFTAYSY  227 (390)
T ss_pred             ----------------------------------------------------HHhC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                0000 111111 1111111111111111


Q ss_pred             ccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 008355          347 MSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAA  426 (568)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~  426 (568)
                      ...++... .+.+..       ..+.+.....+..++...+.++    +.+|.       ++ +.+..+..+..++....
T Consensus       228 ~~~~l~~~-~g~s~~-------~~~~~~~~~~~~~~~g~~~~g~----l~dr~-------~~-~~~~~~~~~~~~~~~~l  287 (390)
T PRK03545        228 IEPFVQQV-AGLSEN-------FATLLLLLFGGAGIIGSVLFSR----LGNRH-------PS-GFLLIAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHh-cCCCcc-------HHHHHHHHHHHHHHHHHHHHHH----Hhhcc-------ch-hHHHHHHHHHHHHHHHH
Confidence            11111110 111110       0111222222233333333332    44442       22 23445555554544333


Q ss_pred             HHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 008355          427 GILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTL  506 (568)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~  506 (568)
                      ....                   .+.+.++...++.|++.....+.....+.+..| +.|+.++|+++....+|..+|+.
T Consensus       288 ~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~  347 (390)
T PRK03545        288 LPAA-------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGAL  347 (390)
T ss_pred             HHHh-------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence            2211                   134455556677788877777777888888877 57899999999999999999999


Q ss_pred             HHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceeccccc
Q 008355          507 LVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATG  565 (568)
Q Consensus       507 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~  565 (568)
                      +.|.+.+..                +++..|+..+++.+++.+.++...+ .+..+.||
T Consensus       348 ~~G~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  389 (390)
T PRK03545        348 LGNQVSLHL----------------GLSSIGYVGAALALAALVWSILIFR-RFPVTLEE  389 (390)
T ss_pred             HHHHHHhcc----------------ChhHHHHHHHHHHHHHHHHHHHHcc-ccchhhcc
Confidence            999887543                2345678888888888877766554 33444444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=4.4e-25  Score=231.46  Aligned_cols=373  Identities=13%  Similarity=0.151  Sum_probs=246.3

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT  111 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~  111 (568)
                      ++++...++..++++.+.+.++.|+++++|+|..++|++.+...+...+..+++|+++||+ |||+++..+.++.+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            7778899999999999999999999999999999999999999999999999999999999 999999999999999988


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      .+..+                   ++.+.+++.|+++|++.+...|...+++.|.+|+++      |++++++.+...++
T Consensus        92 ~~~~~-------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~  146 (400)
T PRK11646         92 TMAIA-------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSA  146 (400)
T ss_pred             HHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence            88776                   457888999999999999888999999999999888      99999999999999


Q ss_pred             hHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhh
Q 008355          192 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE  271 (568)
Q Consensus       192 g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (568)
                      |..+||.+++++. .+||++.|++.++..++..+......++.+. ++..++..                          
T Consensus       147 g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~--------------------------  198 (400)
T PRK11646        147 GAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR--------------------------  198 (400)
T ss_pred             HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH--------------------------
Confidence            9999999999988 6899999998876655544333332222110 00000000                          


Q ss_pred             hhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhcccccee
Q 008355          272 TADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMF  351 (568)
Q Consensus       272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (568)
                          +                                   +++    ...++ ++........   ..++....+....+
T Consensus       199 ----~-----------------------------------~~~----~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~  231 (400)
T PRK11646        199 ----E-----------------------------------GMT----RVLRD-KRFVTYVLTL---TGYYMLAVQVMLML  231 (400)
T ss_pred             ----H-----------------------------------HHH----HHHcC-chHHHHHHHH---HHHHHHHHHHHHhh
Confidence                0                                   000    00000 1111111111   11111111111111


Q ss_pred             EeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 008355          352 VLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEV  431 (568)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  431 (568)
                      +..   .... + +.....+.+........+......    .+..+|   |   .+..+.+..+.++.+++.+.+...+ 
T Consensus       232 p~~---~~~~-~-~~~~~~g~l~~~~~~~~~~~~~~~----~~~~~~---r---~~~~~~~~~~~~~~~~~~~~l~~~~-  295 (400)
T PRK11646        232 PIM---VNDI-A-GSPSAVKWMYAIEACLSLTLLYPI----ARWSEK---R---FRLEHRLMAGLLIMSLSMFPIGMVS-  295 (400)
T ss_pred             hhh---HHhh-c-CCchHHHHHHHHHHHHHHHHHHHH----HHHHHH---h---cchhHHHHHHHHHHHHHHHHHHHhh-
Confidence            110   0000 1 000011112222222222111111    122222   1   2333456677777777766554332 


Q ss_pred             HhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008355          432 VRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV  511 (568)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i  511 (568)
                                         +.++++....+.+++.+...|...+++.+.+|++.||+++|++++...+|..+|+.+.|.+
T Consensus       296 -------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        296 -------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             -------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence                               3344444556778888888899999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 008355          512 TKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYL  552 (568)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~  552 (568)
                      .+..+..+            .....|+..+++++++.+...
T Consensus       357 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        357 FDLGKALN------------QPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHhhcC------------CcchHHHHHHHHHHHHHHHHH
Confidence            87643111            112345555666666655444

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=9.9e-25  Score=228.34  Aligned_cols=375  Identities=12%  Similarity=0.047  Sum_probs=243.3

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .+.++.+.+..++...+.....+.+|.|+.+++|.|..+.|++.+++.+...+++++.|+++||+ ||||.+..+.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG   92 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence            45667777788888888888888999999999999999999999999999999999999999999 99999999888777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+........+.           ....+.+.++++|+++|++.+...+...+++.|.+|+++      |++++++++.
T Consensus        93 ~~~~~~~~~~~~~~-----------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~  155 (392)
T PRK12382         93 LAGLAYLLAAILPV-----------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGM  155 (392)
T ss_pred             HHHHHHHhhhcccc-----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHH
Confidence            66543332211110           011467889999999999999988888899999999888      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcch
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS  267 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (568)
                      +.++|..++|.+++++.+.+||++.+.+..+..++...   ..++ .++.+++++...                      
T Consensus       156 ~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~----------------------  209 (392)
T PRK12382        156 AMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNGT-VRKVPAHAGERP----------------------  209 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHHh-ccCCCCCcccCc----------------------
Confidence            99999999999999998889999876655443322221   1111 110000000000                      


Q ss_pred             hhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccc
Q 008355          268 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQM  347 (568)
Q Consensus       268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (568)
                                                                  +++    +..+..++..  .........+.......
T Consensus       210 --------------------------------------------~~~----~~~~~~~~~~--~~~~l~~~~~~~~~~~~  239 (392)
T PRK12382        210 --------------------------------------------SLW----SVVGLIWKPG--LGLALQGVGFAVIGTFV  239 (392)
T ss_pred             --------------------------------------------hHH----HHHHHHHHhH--HHHHHHHHHHhHHHHHH
Confidence                                                        000    0000000000  00000011111111111


Q ss_pred             cceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008355          348 STMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAG  427 (568)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  427 (568)
                      +.++ .+     ....     ..........+..++..++.++    +.+|.       ++++.+..+..+.+++++...
T Consensus       240 ~~~~-~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~g~----l~~r~-------g~~~~~~~~~~~~~~~~~~~~  297 (392)
T PRK12382        240 SLYF-AS-----KGWA-----MAGFTLTAFGGAFVLMRVLFGW----MPDRF-------GGVKVAIVSLLVETVGLLLLW  297 (392)
T ss_pred             HHHH-Hh-----cCCc-----hhHHHHHHHHHHHHHHHHHHHH----HHHhc-------CCCeehHHHHHHHHHHHHHHH
Confidence            1111 10     0000     0111111122223333344333    44553       333456667777766665544


Q ss_pred             HHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008355          428 ILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLL  507 (568)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l  507 (568)
                      ..+                    +.+......++.+++.+...|.......+..|++.||++.|++++...+|..+|+.+
T Consensus       298 ~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~  357 (392)
T PRK12382        298 LAP--------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPL  357 (392)
T ss_pred             Hcc--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322                    344455566778888888888888899999999999999999999999999999999


Q ss_pred             HHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008355          508 VTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWI  554 (568)
Q Consensus       508 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~  554 (568)
                      .+.+.+..      ||          +..|.+.+++.+++.+..++.
T Consensus       358 ~g~l~~~~------g~----------~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        358 AGMLATSF------GY----------PSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHh------Cc----------hHHHHHHHHHHHHHHHHHHhh
Confidence            99887644      23          456777787777777665544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=1.4e-24  Score=229.20  Aligned_cols=392  Identities=14%  Similarity=0.069  Sum_probs=246.5

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      ....++...++..++.......+|.+.+ +++.+..+.|++.+.+.+...++.++.|+++||+ |||+.+..+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~   95 (417)
T PRK10489         18 AFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLG   95 (417)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHH
Confidence            3455666677777777666667776654 5778999999999999999999999999999999 9999999888877777


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      ....+.......              .+.+.+++.|++.|++.+...++..+++.|.+|+++      |+++.++.+...
T Consensus        96 ~~~~~~~~~~~~--------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  155 (417)
T PRK10489         96 FIGLALNAFLPE--------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTV  155 (417)
T ss_pred             HHHHHHHHHcCC--------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHH
Confidence            666543211111              356778889999999998888888999999999887      999999999999


Q ss_pred             HHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhh
Q 008355          190 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL  269 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (568)
                      ++|..+||.+++.+.+..+|++.|++.++..+++.+.....++..+++.+++++..+..                     
T Consensus       156 ~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------  214 (417)
T PRK10489        156 RLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLL---------------------  214 (417)
T ss_pred             hHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHH---------------------
Confidence            99999999999999888899999988776665554443332211000000000000000                     


Q ss_pred             hhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccc
Q 008355          270 YETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMST  349 (568)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (568)
                                               +                +++     .....+.+........+...........+.
T Consensus       215 -------------------------~----------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  248 (417)
T PRK10489        215 -------------------------A----------------GFR-----FLLASPVVGGIALLGGLLTMASAVRVLYPA  248 (417)
T ss_pred             -------------------------H----------------HHH-----HHHcChHHHHHHHHHHHHHHHHhHHHhhHH
Confidence                                     0                000     000001111111111111111111111111


Q ss_pred             eeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 008355          350 MFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGIL  429 (568)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  429 (568)
                      +. .+..+.+.       ...+.+.....++.++...+.++    +.+|       .++.+.+..+.++.+++++.+...
T Consensus       249 ~~-~~~~g~~~-------~~~g~~~~~~~~g~~ig~~~~~~----l~~~-------~~~~~~l~~~~~~~~~~~~~~~~~  309 (417)
T PRK10489        249 LA-DEVWQMGA-------AQIGLLYAAVPLGAALGALTSGW----LAHS-------ARPGLLMLLSTLGSFLAVGLFGLM  309 (417)
T ss_pred             HH-HhccCCCh-------hHhHHHHHHHHHHHHHHHHHHHH----hhhc-------cCcchHHHHHHHHHHHHHHHHHcc
Confidence            11 11011110       01122222223333333333332    3332       222334566666666665554422


Q ss_pred             HHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008355          430 EVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVT  509 (568)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  509 (568)
                      .                    +.+......++.+++.+...+..++++.+..|++.||++.|+++....+|..+|+.+.|
T Consensus       310 ~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        310 P--------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             c--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence            1                    33445556677788888777888899999999999999999999999999999999999


Q ss_pred             HhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceeccccc
Q 008355          510 IVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATG  565 (568)
Q Consensus       510 ~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~  565 (568)
                      .+.+..+                ....++..+++.++..++.+...+++|+++.||
T Consensus       370 ~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (417)
T PRK10489        370 GLGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTP  409 (417)
T ss_pred             HHHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            8876432                123566666666666666666677777766554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=5.7e-25  Score=237.59  Aligned_cols=448  Identities=11%  Similarity=0.029  Sum_probs=246.8

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQ-----LNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIAS  101 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~  101 (568)
                      +++.+.++.+..+.+......+....+. +.++     .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            3455555666666666655444444443 3332     234566778999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhh
Q 008355          102 FSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF  181 (568)
Q Consensus       102 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (568)
                      +.++..++.++++++.+..             ...+...++++|+++|++.|...+..+.+++|.+|+++      |+++
T Consensus        92 ~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~  152 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSS-------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAM  152 (502)
T ss_pred             HHHHHHHHHHHHHHccCcc-------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHH
Confidence            9999999888877752100             00236789999999999999999999999999999999      9999


Q ss_pred             hhhHHHHHHHhHHHhhhhhhheec-----------------------cccchhhhhHHHHHHHHHHHHHHhcCceeeecC
Q 008355          182 FNWFYLSINIGALVASSVLVWIQM-----------------------NVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQK  238 (568)
Q Consensus       182 ~~~~~~~~~ig~~~~p~~~~~i~~-----------------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  238 (568)
                      .++.+....+|..+++.++..+..                       .++||+.|.+.++..++.++..+.         
T Consensus       153 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~---------  223 (502)
T TIGR00887       153 MAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT---------  223 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh---------
Confidence            999999999999999887764421                       247999998777655544443322         


Q ss_pred             CCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhh-hhccCccccCCccc-hhhhhhhhhccccccCCCCCCCccc
Q 008355          239 PGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEEC-NIQGSRKLESTSKF-KFFDKAAVETQTDRVKGSADPWRLC  316 (568)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  316 (568)
                                             +||+|+++.+++++++ ..+...+..+.+.. ...+..+++..  . +....+|++.
T Consensus       224 -----------------------lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l  277 (502)
T TIGR00887       224 -----------------------IPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTA--V-EVPKASWSDF  277 (502)
T ss_pred             -----------------------CCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhcc--c-cchhhhHHHH
Confidence                                   4566666655544322 22111111110000 00000000000  0 0001123322


Q ss_pred             chhh--HHHHHHHHHHHHHHHhhh-HHHhhhccccceeEeecccccCCCCCCcccCchh------hccccchhhhhhhhh
Q 008355          317 TVTQ--VEELKAIIRLLPVWASGI-VFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSAS------LSLFDTLSVIFWAPI  387 (568)
Q Consensus       317 ~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~l  387 (568)
                      .+..  .+..++++......+... .++....+.++.+ .. .++..... +.......      ......+..++...+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~-~~-~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  354 (502)
T TIGR00887       278 FTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL-SA-IGYSPPAA-TNNAYEELYKTAVGNLIIALAGTVPGYWV  354 (502)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH-HH-HcCCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1110  011111111111111111 1111111111111 11 11111000 00000000      000011111112222


Q ss_pred             hhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHH
Q 008355          388 YDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEV  467 (568)
Q Consensus       388 ~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~  467 (568)
                      ..+    +.+|.++|       +.+.++.++++++..+.+.....               .+.. ..+....+...++..
T Consensus       355 ~~~----l~dr~gRR-------~~l~~~~~~~~~~~~~l~~~~~~---------------~~~~-~~~~~~~~~~~~~~~  407 (502)
T TIGR00887       355 TVF----LVDIIGRK-------PIQLMGFFILTVLFFVLGFAYNH---------------LSTH-GFLAIYVLAQFFANF  407 (502)
T ss_pred             HHH----Hhhhhcch-------hHHHHHHHHHHHHHHHHHHHHHh---------------cchh-HHHHHHHHHHHHHhc
Confidence            223    45554433       34566666666666555433211               0001 111111111222223


Q ss_pred             HHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHH
Q 008355          468 FTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLN  547 (568)
Q Consensus       468 ~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~  547 (568)
                      ...+..+.+..|.+|++.|+++.|+.+..+.+++++++.+.+.+.+....+.  |+.    ...++...|++++++++++
T Consensus       408 ~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~----~~~~~~~~~~i~~~~~~~~  481 (502)
T TIGR00887       408 GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK--GYP----TGIWMGHVLEIFALFMFLG  481 (502)
T ss_pred             CCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc--ccc----ccccchHHHHHHHHHHHHH
Confidence            3456678889999999999999999999999999999999998765321000  000    0012235678888888887


Q ss_pred             HHHHHHHhhhceecccccCC
Q 008355          548 FLVYLWIAKWFTYKKATGRA  567 (568)
Q Consensus       548 ~v~~~~~~~~~~~~~~~~~~  567 (568)
                      .+.+ ++.||+++++.||.+
T Consensus       482 ~i~~-~~lpEt~~~~leei~  500 (502)
T TIGR00887       482 ILFT-LLIPETKGKSLEELS  500 (502)
T ss_pred             HHHh-eEeccCCCCCHHhhh
Confidence            6654 566999998877643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=1.6e-24  Score=227.84  Aligned_cols=174  Identities=15%  Similarity=0.117  Sum_probs=149.1

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      .+|..++..++..+++....+..-...| .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            4455667777777777777766655555 45678999999999999999999999999999999999 999999999988


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      ..++.+++.++                   .+.+.+++.|++.|++.+...+...+++.|++|+++      |+++++++
T Consensus        90 ~~~~~~~~~~~-------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~  144 (406)
T PRK11551         90 FGLFSLATAQA-------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLM  144 (406)
T ss_pred             HHHHHHHHHHh-------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence            88888777776                   457889999999999999999999999999999888      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      +.+.++|..++|.+++.+.+..+|++.|++.++..++..+.
T Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888899999998877554444433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=2.7e-25  Score=238.85  Aligned_cols=186  Identities=12%  Similarity=0.107  Sum_probs=138.3

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHh--------CCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQL--------NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTI   99 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------g~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~   99 (568)
                      .+.++...++.+.+......+.+..+ .+++.+        |.+..+.+++.+++.++..+++++.|+++||+ |||+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~   88 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSL   88 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHH-HHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence            44445555555555444433333333 345555        88899999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhh
Q 008355          100 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS  179 (568)
Q Consensus       100 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (568)
                      ..+.++++++.+.+++....-.       +....+..+...++++|+++|++.|...+...++++|++|+++      |+
T Consensus        89 ~~~~~l~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg  155 (479)
T PRK10077         89 KIAAVLFFISALGSAWPEFGFT-------SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RG  155 (479)
T ss_pred             HHHHHHHHHHHHHHHhhccccc-------cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hh
Confidence            9999998888877765310000       0000011345678899999999999999999999999999998      99


Q ss_pred             hhhhhHHHHHHHhHHHhhhhhhhe--------eccccchhhhhHHHHHHHHHHHHHH
Q 008355          180 SFFNWFYLSINIGALVASSVLVWI--------QMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       180 ~~~~~~~~~~~ig~~~~p~~~~~i--------~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      +++++.+.+..+|..+++.+++.+        .+.+|||+.|++.++..++..+..+
T Consensus       156 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~  212 (479)
T PRK10077        156 KLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY  212 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988766543        2457999999988766655544433

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=1e-24  Score=228.23  Aligned_cols=175  Identities=17%  Similarity=0.169  Sum_probs=154.3

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      +.+|+.+.++...++..++++...++++.|+++++|++..++|++.+.+.+.+.++.++.|+++||+ |||+++.++.+.
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~   82 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA   82 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence            4467788999999999999999999999999999999999999999999999999999999999999 999999999988


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      ..++.++.+++                   ++.+.+++.|.+.+.+.+...++..+...|.+|+++      |++++++.
T Consensus        83 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~  137 (395)
T PRK10054         83 FASGFIAIPLV-------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLN  137 (395)
T ss_pred             HHHHHHHHHHH-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHH
Confidence            88888887776                   456677778888888878778888999999999887      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      +...++|..++|.+++++.+ .+|+.+|++.++..++.++..
T Consensus       138 ~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        138 YTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence            99999999999999998875 799999998876666654443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=9.6e-25  Score=231.51  Aligned_cols=168  Identities=11%  Similarity=0.106  Sum_probs=143.9

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.++..++..++..+..+.+...+|.+ .+++|+|..+.|++.+.+.++..++.++.|+++||+ |||+++.++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~  100 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence            334455555555555555655666655 457999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +.++++++                   .+.+.+++.|++.|++.|...+....++.|++|+++      |++++++++.+
T Consensus       101 ~~~~~~~~-------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~  155 (434)
T PRK11663        101 INILFGFS-------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTA  155 (434)
T ss_pred             HHHHHHHH-------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHH
Confidence            99888877                   457888899999999999999999999999999988      99999999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIA  223 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~  223 (568)
                      .++|..++|.+.+++.+.+|||+.|++.++..++.
T Consensus       156 ~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        156 HNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999877654443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.6e-24  Score=215.29  Aligned_cols=378  Identities=13%  Similarity=0.122  Sum_probs=260.5

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      ..+..++.+.++.|.....=+.....+|. +.+++|.|..++|+.++.|..+..++.|+...+.||+ .||++++..+++
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~l   87 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLAL   87 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence            34667888888888888888877777775 7789999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      +.++.++++++                   +|++.+.++|++.|+..|.+++...++.+++.|+++      |+++.++.
T Consensus        88 Fi~~n~l~alA-------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv  142 (394)
T COG2814          88 FIVSNLLSALA-------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALV  142 (394)
T ss_pred             HHHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHH
Confidence            99999999999                   679999999999999999999999999999999999      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCC-CCChhHHHHHHHHHHHhhcccccCC
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKP-GGSPLTRIMQVIVASFRKSNVVVPA  264 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  264 (568)
                      ..+..++..+|..++.++.+.+|||..|++.+...+++++..+...| .++.++ .+.+..+..+               
T Consensus       143 ~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~~~~~~~---------------  206 (394)
T COG2814         143 FTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSLPGPLRTLLR---------------  206 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCCcchhHHHH---------------
Confidence            99999999999999999999999999999998888877777666555 111111 1011000000               


Q ss_pred             cchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhh
Q 008355          265 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVY  344 (568)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (568)
                                                                             ..++.+.........+.....+..|
T Consensus       207 -------------------------------------------------------~l~~p~v~~~l~~t~l~~~g~F~~f  231 (394)
T COG2814         207 -------------------------------------------------------LLRRPGVLLGLLATFLFMTGHFALY  231 (394)
T ss_pred             -------------------------------------------------------HhcCchHHHHHHHHHHHHcchhhhH
Confidence                                                                   0011111122222333344444555


Q ss_pred             ccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 008355          345 SQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV  424 (568)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~  424 (568)
                      .+...++.+... ++..       ..+++-...++..++...+.++    +.||        ++.+.+...+++.++.++
T Consensus       232 tYi~P~L~~v~g-~s~~-------~vs~~Ll~~Gv~~~~Gn~~gGr----l~dr--------~~~~~l~~~~~l~a~~~l  291 (394)
T COG2814         232 TYIRPFLESVAG-FSVS-------AVSLVLLAFGIAGFIGNLLGGR----LADR--------GPRRALIAALLLLALALL  291 (394)
T ss_pred             HhHHHHHHHccC-CCHh-------HHHHHHHHHHHHHHHHHHHHhh----hccc--------cchhHHHHHHHHHHHHHH
Confidence            444443322211 1110       0111122222333333333333    4444        223355566677777766


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHH
Q 008355          425 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLS  504 (568)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg  504 (568)
                      .+....                   .+.+......++.+++........+.-..+.+ ++.+..+.+++....++|..+|
T Consensus       292 ~l~~~~-------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~G  351 (394)
T COG2814         292 ALTFTG-------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALG  351 (394)
T ss_pred             HHHHhc-------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHH
Confidence            655443                   13344444444455555444444444444422 5779999999999999999999


Q ss_pred             HHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008355          505 TLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW  557 (568)
Q Consensus       505 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  557 (568)
                      ..++|.+.+..                ++....++.+++.+++.+..+...++
T Consensus       352 A~lGG~v~~~~----------------g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         352 AALGGLVLDAL----------------GYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHhh----------------chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999987753                23445677777777777666554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=3.7e-24  Score=221.28  Aligned_cols=161  Identities=12%  Similarity=0.089  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008355           41 ERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS  120 (568)
Q Consensus        41 ~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~  120 (568)
                      ++..+..+.+.+| .+++++|+|..+.|++.+++.+++.+++++.|+++||+ |||+++..+.+....+.......    
T Consensus         3 ~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~----   76 (368)
T TIGR00903         3 SQAIWVTFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP----   76 (368)
T ss_pred             hhHHHHHHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh----
Confidence            3444444545555 46778999999999999999999999999999999999 99988765544444433222221    


Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhh
Q 008355          121 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVL  200 (568)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~  200 (568)
                                     .++..+++.|+++|+|.+.. +.....++|++|+++      |++++++.+.+.++|..+++.++
T Consensus        77 ---------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~  134 (368)
T TIGR00903        77 ---------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAG  134 (368)
T ss_pred             ---------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                           35788999999999999864 455566699999887      99999999999999999999999


Q ss_pred             hheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          201 VWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       201 ~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      +++.+.+|||+.|++.++..++..++.+.
T Consensus       135 ~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       135 LKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999866655444444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=8.3e-24  Score=226.88  Aligned_cols=178  Identities=14%  Similarity=0.103  Sum_probs=155.2

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .+.++.+.+..++..+..+.+.+.+|.+.+ ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            445788888888988888888888888765 6999999999999999999999999999999999 99999999988888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+++.++                   .+.+.+++.|+++|++.+...|...+++.|.+|+++      |++++++.+.
T Consensus        87 ~~~~~~~~~-------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  141 (471)
T PRK10504         87 LGSLFCALS-------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTL  141 (471)
T ss_pred             HHHHHHHHh-------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence            888877766                   457788999999999999999999999999999887      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCc
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  232 (568)
                      ..++|..++|.+++.+.+..|||+.|++..+...+..+......+
T Consensus       142 ~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        142 PGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999887666555554444333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=8.5e-24  Score=227.89  Aligned_cols=403  Identities=11%  Similarity=0.033  Sum_probs=241.5

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      +|..+..+++..++..+..-.+..-+|. +.+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            3445566667777776666555555555 5678999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccC-CCCCchhhhhhhhhhhhH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQF-DETDDGEREKKSSFFNWF  185 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++++++.+                   ++.+.++++|+++|+|.+...|.....+.+.+ |+++      |+++++++
T Consensus        82 ~~~~~~~~~a-------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~  136 (495)
T PRK14995         82 GLASLAAAFS-------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVW  136 (495)
T ss_pred             HHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHH
Confidence            9999999987                   56888999999999999998888888887776 4555      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHH-HHH-----HHHHhhcc
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIM-QVI-----VASFRKSN  259 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~  259 (568)
                      ....++|..+||.+++++.+.+|||+.|++.....++.+++.....++.++++.++.+..... ...     ....+...
T Consensus       137 ~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~  216 (495)
T PRK14995        137 AAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTAL  216 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999876666655544444333221111111111110 000     00111000


Q ss_pred             cccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhH
Q 008355          260 VVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIV  339 (568)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (568)
                        ......+....           .+    .............+.+   ...|..+.+  -.++ +..........+...
T Consensus       217 --~~~~~~~~~~~-----------~~----~~~~~~l~~f~~~e~~---~~~p~~~~~--lf~~-~~~~~~~~~~~~~~~  273 (495)
T PRK14995        217 --KGFLSLWVTSL-----------TL----LTGALLLGLFIRTQLA---ASRPMIDMR--LFTH-RIILSGVVMAMTAMI  273 (495)
T ss_pred             --ccCCchHHHHH-----------HH----HHHHHHHHHHHHHHhc---CCCCCcCHH--HhCC-cccHHHHHHHHHHHH
Confidence              00000000000           00    0000000000000000   111211100  0011 111111111111111


Q ss_pred             HHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHH
Q 008355          340 FATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS  419 (568)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~  419 (568)
                      .+.....+.+.+.+...+.+.       ...+.......+...+..++.++    +.+|.       ++++.+..|+++.
T Consensus       274 ~~~~~~~~~~~~lq~v~g~s~-------~~ag~~~~~~~~~~~~~~~~~g~----l~~r~-------g~~~~~~~g~~~~  335 (495)
T PRK14995        274 TLVGFELLMAQELQFVHGLSP-------LEAGMFMLPVMVASGFSGPIAGI----LVSRL-------GLRLVATGGMALS  335 (495)
T ss_pred             HHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHc-------CchHHHHHHHHHH
Confidence            111111111111111111000       01111222222333444444444    44553       3334566777777


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHH
Q 008355          420 IFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAV  499 (568)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l  499 (568)
                      +++++.+.....                 ..+.+......++.|+|.++..+.....+.+..|++.++.+.+++++..++
T Consensus       336 ~~~~~~l~~~~~-----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l  398 (495)
T PRK14995        336 ALSFYGLAMTDF-----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYEL  398 (495)
T ss_pred             HHHHHHHHHhcC-----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHH
Confidence            777665543321                 113344555678889999999998999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 008355          500 GNYLSTLLVTIVTKV  514 (568)
Q Consensus       500 g~~lg~~l~~~i~~~  514 (568)
                      |+.+|+.+.+.+.+.
T Consensus       399 G~~~G~ai~g~i~~~  413 (495)
T PRK14995        399 GAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=1.4e-24  Score=232.07  Aligned_cols=143  Identities=19%  Similarity=0.329  Sum_probs=124.4

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHH
Q 008355           64 NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFV  143 (568)
Q Consensus        64 ~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (568)
                      ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.+++.....                ..+.+.+++
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  132 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF----------------ALSVEMLIV  132 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc----------------ccchHHHHH
Confidence            88999999999999999999999999999 9999999999999999888866521                134568999


Q ss_pred             HHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhh---hheeccccchhhhhHHHHHH
Q 008355          144 ALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVL---VWIQMNVGWGWGFGIPAVAM  220 (568)
Q Consensus       144 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~---~~i~~~~g~~~~f~~~~~~~  220 (568)
                      +|+++|+|.+...+...++++|++|+++      |++++++++.+.++|..++|.++   +...+..+||+.|++.++..
T Consensus       133 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~  206 (481)
T TIGR00879       133 GRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPA  206 (481)
T ss_pred             HHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Confidence            9999999999999999999999999998      99999999999999999999998   77777789999999966655


Q ss_pred             HHHHHHHHh
Q 008355          221 AIAVVFFFS  229 (568)
Q Consensus       221 ~~~~~~~~~  229 (568)
                      ++.++..++
T Consensus       207 ~~~~~~~~~  215 (481)
T TIGR00879       207 GLLFLGLFF  215 (481)
T ss_pred             HHHHHHHhc
Confidence            555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=9.6e-25  Score=217.12  Aligned_cols=175  Identities=17%  Similarity=0.184  Sum_probs=157.4

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHH---HHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNL---VNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASF  102 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~  102 (568)
                      ++||  +.++...++.+.+||...-++   .+++.++.++|..|.|++.+++.+.+.++..+.|.++||. +.|+.+-.+
T Consensus        24 ~~~r--~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~g  100 (448)
T COG2271          24 KRWR--IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFG  100 (448)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHH
Confidence            3444  778888889999999888765   4688999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhh
Q 008355          103 SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF  182 (568)
Q Consensus       103 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (568)
                      +++.++..+++++.                   .+...+.+..++.|+.+|.-+|++..+++.+++++|      ||+..
T Consensus       101 Lilsai~nil~Gfs-------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~  155 (448)
T COG2271         101 LILSAIVNILFGFS-------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWW  155 (448)
T ss_pred             HHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceE
Confidence            99999999999998                   347778899999999999999999999999999999      99999


Q ss_pred             hhHHHHHHHhHHHhhhhh--hheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          183 NWFYLSINIGALVASSVL--VWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       183 ~~~~~~~~ig~~~~p~~~--~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      ++.+.+.|+|+.+.|++.  +++..+++||..|+.++++.++..+..+
T Consensus       156 siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         156 SIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             EEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999  8999889999999999876555444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.93  E-value=8e-24  Score=218.28  Aligned_cols=359  Identities=13%  Similarity=0.086  Sum_probs=233.3

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008355           33 FILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL  112 (568)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  112 (568)
                      .++...++..++.......+|.|.. +++.+..+.+++.+++.+...++.++.|+++||+ |||+++..+.++.+++.++
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            4556677777777777777888776 5899999999999999999999999999999999 9999999999888888877


Q ss_pred             HHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHh
Q 008355          113 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIG  192 (568)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  192 (568)
                      ..+....+.              .+.+.+++.|++.|++.+...++..++++|++|+++      |++++++.+...++|
T Consensus        81 ~~~~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g  140 (365)
T TIGR00900        81 LPFVALLGG--------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLF  140 (365)
T ss_pred             HHHHHHcCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHH
Confidence            776632111              368889999999999999999999999999999887      999999999999999


Q ss_pred             HHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhh
Q 008355          193 ALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET  272 (568)
Q Consensus       193 ~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (568)
                      ..++|.+++++.+..||++.|++.++..+++.+..+..+.+.+++ +++++.++                    +.  .+
T Consensus       141 ~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------------~~--~~  197 (365)
T TIGR00900       141 YIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSN--------------------AV--LR  197 (365)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccch--------------------hH--HH
Confidence            999999999999999999999887766555544443332211100 00000000                    00  00


Q ss_pred             hhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHH-HHhhhHHHhhhcccccee
Q 008355          273 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV-WASGIVFATVYSQMSTMF  351 (568)
Q Consensus       273 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  351 (568)
                      +                   ..                ..++     ...+.+.+...... ...............+++
T Consensus       198 ~-------------------~~----------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (365)
T TIGR00900       198 D-------------------TR----------------EGIK-----FVLKNPLLRTLLLLALLFNLVFAPAIVALFPYV  237 (365)
T ss_pred             H-------------------HH----------------hHHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            0                   00                0000     00000111111111 111111111111111111


Q ss_pred             EeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 008355          352 VLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEV  431 (568)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  431 (568)
                      ..+..+.+.       ...+.+.....+..++...+..+    +.||.       ++++.+..+.++.+++.+...... 
T Consensus       238 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-  298 (365)
T TIGR00900       238 QSKYLGRGS-------THYGWVLAAFGLGALLGALLLGL----LGRYF-------KRMALMTGAIFVIGLAILVVGLTP-  298 (365)
T ss_pred             HHHHhCCch-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------chhHHHHHHHHHHHHHHHHHHhhc-
Confidence            111000000       01122222223333333333333    44442       333455556666666655544322 


Q ss_pred             HhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008355          432 VRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV  511 (568)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i  511 (568)
                                       + +.+......++.+++.+...+..+++..|..|++.||++.|+.++...++..+++.+.|.+
T Consensus       299 -----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       299 -----------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             -----------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             0 2455566678889999999999999999999999999999999999999999999999987


Q ss_pred             hh
Q 008355          512 TK  513 (568)
Q Consensus       512 ~~  513 (568)
                      .+
T Consensus       361 ~~  362 (365)
T TIGR00900       361 AD  362 (365)
T ss_pred             HH
Confidence            65

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=4.4e-23  Score=215.88  Aligned_cols=176  Identities=14%  Similarity=0.200  Sum_probs=151.9

Q ss_pred             ccCCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHH
Q 008355           23 KKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASF  102 (568)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~  102 (568)
                      ..++.|+.+..+.+..++.....|.....+|. +.+++|.++.+.++..+++.++..++.++.|+++||+ |||+++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~   91 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF   91 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence            34446776666666666666666666666666 5568999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhh
Q 008355          103 SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF  182 (568)
Q Consensus       103 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (568)
                      .++.+++.+++.++                   ++.+.+++.|+++|++.|...|...+++.|++|+++      |+++.
T Consensus        92 ~~~~~~~~~~~~~~-------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~  146 (394)
T PRK10213         92 AVLLTLSCLLVSFA-------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKAL  146 (394)
T ss_pred             HHHHHHHHHHHHHH-------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHH
Confidence            99999998888877                   568899999999999999999999999999999888      99999


Q ss_pred             hhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHH
Q 008355          183 NWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       183 ~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~  225 (568)
                      ++...+.++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus       147 ~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        147 SVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987765544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=1.2e-23  Score=221.14  Aligned_cols=381  Identities=13%  Similarity=0.068  Sum_probs=242.4

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhh-----hhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVT-----ASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-----~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      |....+.+..++...++....+.+|.|++ ++|.+..+     .|++.+++.+...++.++.|+++||+ |||+.+..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~   91 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence            44566667788888888888888998886 58888654     48888899999999999999999999 9999999998


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      +..+++.+++...                   .+.+.+++.|++.|++.+ ..+...+++.|.+|+++      |+++.+
T Consensus        92 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~  145 (408)
T PRK09874         92 LGMGIVMVLMGLA-------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALG  145 (408)
T ss_pred             HHHHHHHHHHHHH-------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHH
Confidence            8888888877766                   457889999999999865 45777888899999888      999999


Q ss_pred             hHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccC
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVP  263 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (568)
                      +.+...++|..++|.+++.+.+..+|++.|++.++..++..+......++..+  +.+++.....               
T Consensus       146 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------  208 (408)
T PRK09874        146 TLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKKEMLHM---------------  208 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhHH---------------
Confidence            99999999999999999999888999999998877665555444333222110  0000000000               


Q ss_pred             CcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHH-HHhhhHHHh
Q 008355          264 ADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV-WASGIVFAT  342 (568)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  342 (568)
                                 ++ ..+   .                        .            ++.+........ .........
T Consensus       209 -----------~~-~~~---~------------------------~------------~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T PRK09874        209 -----------RE-VVT---S------------------------L------------KNPKLVLSLFVTTLIIQVATGS  237 (408)
T ss_pred             -----------HH-HHH---h------------------------C------------cCCchHHHHHHHHHHHHHHHHH
Confidence                       00 000   0                        0            000000001100 111111100


Q ss_pred             hhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 008355          343 VYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS  422 (568)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~  422 (568)
                      ....++.+......    ... ......+.+.....+..++..+..++    +.+|       .++++.+..+.++..++
T Consensus       238 ~~~~~~~~~~~~~~----~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~----l~dr-------~g~~~~~~~~~~~~~~~  301 (408)
T PRK09874        238 IAPILTLYVRELAG----NVS-NIAFISGMIASVPGVAALLSAPRLGK----LGDR-------IGPEKILITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHhc----cch-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-------cccchhHHHHHHHHHHH
Confidence            00111111110000    000 00000011111122223333333333    3444       33334566666655555


Q ss_pred             HHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHH
Q 008355          423 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNY  502 (568)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~  502 (568)
                      .+......                    +.+.+....++.+++.+...|...+.+.+..|++.||+..++++....+|..
T Consensus       302 ~~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  361 (408)
T PRK09874        302 LIPMSFVQ--------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNV  361 (408)
T ss_pred             HHHHHHhc--------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHH
Confidence            54433221                    3444555667788899988999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008355          503 LSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW  557 (568)
Q Consensus       503 lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  557 (568)
                      +||.+.+.+.+..      |          ++..|++.+++.+++.+..++..++
T Consensus       362 ~gp~~~G~l~~~~------g----------~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        362 TGPLMGAAISANY------G----------FRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             hhHHHHHHHHhhc------c----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999876532      2          3457888888888887766554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=1.7e-23  Score=217.80  Aligned_cols=154  Identities=18%  Similarity=0.323  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 008355           50 TNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKD  129 (568)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  129 (568)
                      ....+++++++|.+..+.+++.+++.++..++.++.|+++||+ |||+++..+.++.+++..+++++             
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------   79 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------   79 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence            3444568889999999999999999999999999999999999 99999999999999999888887             


Q ss_pred             CCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccc
Q 008355          130 ACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGW  209 (568)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~  209 (568)
                            .+.+.+++.|++.|++.+...+....++.|.+|+++      |++++++.+...++|..++|.+++.+.+..+|
T Consensus        80 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  147 (399)
T TIGR00893        80 ------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSW  147 (399)
T ss_pred             ------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCc
Confidence                  468889999999999999999999999999999888      99999999999999999999999999899999


Q ss_pred             hhhhhHHHHHHHHHHHHHHh
Q 008355          210 GWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       210 ~~~f~~~~~~~~~~~~~~~~  229 (568)
                      ++.|++.++..++..+....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       148 QWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             hHHHHHHHHHHHHHHHHhhh
Confidence            99999877665555444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.92  E-value=1.1e-22  Score=219.13  Aligned_cols=176  Identities=18%  Similarity=0.133  Sum_probs=131.3

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhh-hhh-----hHHHHHHHHHhhhhhHHHHhhhccCchHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVT-ASN-----NVTNWSGTCYITPLIGAFLADSYMGRFWTIAS  101 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-~g~-----~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~  101 (568)
                      +|.++...++.+++.+.+.. ..+..+++.++++.+... .++     +.++..++..++.++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            44556666777887776654 445556788887543322 122     23566788889999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhh
Q 008355          102 FSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF  181 (568)
Q Consensus       102 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (568)
                      +.+++++++++++++.+...+           ....+..+++.|+++|+|.|+..+....+++|++|+++      |++.
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~-----------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~  155 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATI-----------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFM  155 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHH-----------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHH
Confidence            999999999999988221100           00001248899999999999999999999999999998      9999


Q ss_pred             hhhHHHHHHHhHHHhhhhhhhee--------ccccchhhhhHHHHHHHH
Q 008355          182 FNWFYLSINIGALVASSVLVWIQ--------MNVGWGWGFGIPAVAMAI  222 (568)
Q Consensus       182 ~~~~~~~~~ig~~~~p~~~~~i~--------~~~g~~~~f~~~~~~~~~  222 (568)
                      .++...+..+|..+|+.+...+.        ..+|||++|++.++..++
T Consensus       156 ~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        156 GSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            99998888888888876554332        257999999987654443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=4.2e-23  Score=216.02  Aligned_cols=367  Identities=14%  Similarity=0.070  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008355           40 CERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASV  119 (568)
Q Consensus        40 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~  119 (568)
                      ..+..++.+.+.+| .+++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++++++.++++++   
T Consensus        20 ~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a---   94 (393)
T PRK09705         20 NMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY---   94 (393)
T ss_pred             HcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC---
Confidence            33333344555555 57789999999999999999999999999999999999 99999999999999999999988   


Q ss_pred             cCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhh
Q 008355          120 SGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSV  199 (568)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~  199 (568)
                                      ++++.++++|+++|+|.+...+....++.+++| ++      |+++++.+..+.++|..+++.+
T Consensus        95 ----------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~  151 (393)
T PRK09705         95 ----------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAI  151 (393)
T ss_pred             ----------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHH
Confidence                            457789999999999999999999999999987 66      9999999999999999999999


Q ss_pred             hhheeccc-cchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhh
Q 008355          200 LVWIQMNV-GWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECN  278 (568)
Q Consensus       200 ~~~i~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  278 (568)
                      ++++.++. +||+.+.+.++..++.++..+...++    .|++++                     .          +  
T Consensus       152 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------------~----------~--  194 (393)
T PRK09705        152 TPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSH---------------------K----------T--  194 (393)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccc---------------------C----------C--
Confidence            99888775 89988766554443333322222111    010000                     0          0  


Q ss_pred             hccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccc
Q 008355          279 IQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTM  358 (568)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (568)
                                                    +..+.+..     ++.+.....+...+....++....+.+.++.+  ...
T Consensus       195 ------------------------------~~~~~~~l-----~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~  237 (393)
T PRK09705        195 ------------------------------TTTPVRVV-----FTPRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGA  237 (393)
T ss_pred             ------------------------------CcCCcccc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCC
Confidence                                          00000000     00111111111112222222233333333221  111


Q ss_pred             cCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008355          359 DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVK  438 (568)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~  438 (568)
                      +..       ..+.......+..++...+.++    +.||       .++++.+..++.+..++.+.+....        
T Consensus       238 s~~-------~ag~~~~~~~i~~i~g~~~~g~----l~~r-------~~~~~~~~~~~~l~~~~~~~~~~~~--------  291 (393)
T PRK09705        238 SAQ-------YSGSLLALMTLGQAAGALLMPA----MARH-------QDRRKLLMLALVLQLVGFCGFIWLP--------  291 (393)
T ss_pred             Chh-------hhhHHHHHHHHHHHHHHHHHHH----HHhh-------ccchHHHHHHHHHHHHHHHHHHHcc--------
Confidence            111       1112222223333333333333    4444       3333456666666666655443222        


Q ss_pred             ccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008355          439 RNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-DAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTK  517 (568)
Q Consensus       439 ~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~  517 (568)
                                 .+...+  ...+.+++.+...|.......+..| ++.+|+..|+.+....++..++|.+.+.+.+..+ 
T Consensus       292 -----------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-  357 (393)
T PRK09705        292 -----------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-  357 (393)
T ss_pred             -----------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence                       011111  1344577777777777777777774 7889999999999999999999999999887542 


Q ss_pred             CCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceecc
Q 008355          518 NGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK  562 (568)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~  562 (568)
                                    ++...|.+.++++++..+..+.+.+|++.+.
T Consensus       358 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        358 --------------NYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             --------------CchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence                          1234567777777777777777777766554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.92  E-value=2.4e-23  Score=221.96  Aligned_cols=172  Identities=16%  Similarity=0.120  Sum_probs=132.2

Q ss_pred             hHhhHHHHHHHHHHHH---HHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           33 FILGNECCERLAYYGM---STNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        33 ~~~~~~~~~~~~~~~~---~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      .++...++....+|..   .....+|+.++ |++..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~  106 (452)
T PRK11273         29 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV  106 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHH
Confidence            3334444444444433   23344577777 99999999999999999999999999999999 9999999999998888


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      .+.+++...               ...+.+.+++.|++.|++.|...|.....+.|++|+++      |++++++++.+.
T Consensus       107 ~~~~~~~~~---------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~  165 (452)
T PRK11273        107 MLFMGFVPW---------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAH  165 (452)
T ss_pred             HHHHHhhhc---------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHH
Confidence            888776521               01356778899999999999988888888999999988      999999999999


Q ss_pred             HHhHH-HhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          190 NIGAL-VASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       190 ~ig~~-~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      ++|+. .+|+++..+....|||+.|++.++..++..++.
T Consensus       166 ~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~  204 (452)
T PRK11273        166 NVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA  204 (452)
T ss_pred             HhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            99874 455544333334589999998776555544333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=1.1e-22  Score=211.30  Aligned_cols=169  Identities=13%  Similarity=0.106  Sum_probs=137.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHH-HHHHHHHHHHHH
Q 008355           35 LGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIAS-FSIIYCLGMTLL  113 (568)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~-~~~~~~i~~~~~  113 (568)
                      ++..++..++.....+.++.|+++++|.|..+.|++.+++.+...+..++.|+++||+ ||||.++. +.+...++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            4557778888888889999999999999999999999999999999999999999999 99887655 445555666666


Q ss_pred             HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhh--hhhHHHHHHH
Q 008355          114 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF--FNWFYLSINI  191 (568)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~i  191 (568)
                      +.+                   ++.+.+++.|+++|.+.+...|...++..|..|+++      |.++  .+..+...++
T Consensus        82 ~~~-------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  136 (375)
T TIGR00899        82 AWN-------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISL  136 (375)
T ss_pred             Hhc-------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhH
Confidence            665                   457778888988888878788888888888877655      5544  5778888899


Q ss_pred             hHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          192 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       192 g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      |..++|.+++++.+.+|||+.|++.++..++..+..+.
T Consensus       137 g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       137 AWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998899999999988766555544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09952 shikimate transporter; Provisional

Probab=99.92  E-value=2.3e-22  Score=213.39  Aligned_cols=177  Identities=10%  Similarity=0.095  Sum_probs=131.7

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHh--CCChhhhhhhHH-----HHHHHHHhhhhhHHHHhhhccCchHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL--NQGNVTASNNVT-----NWSGTCYITPLIGAFLADSYMGRFWT   98 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s~~~~g~~~~-----~~~~~~~i~~~~~G~laDr~~Grk~~   98 (568)
                      .++|.++..++..+++......+....+.++.+++  +.++. .+++.+     +..++..++.++.|+++||+ |||++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~   96 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence            34566666777777777776655555555666555  66665 455432     33445567788889999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhh
Q 008355           99 IASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK  178 (568)
Q Consensus        99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  178 (568)
                      +..+.+++++++++++++.+....           .......+++.|+++|++.|+..|....++.|++|+++      |
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r  159 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFSTI-----------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------K  159 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHH-----------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------C
Confidence            999999999999999987221100           00012258889999999999999999999999999998      9


Q ss_pred             hhhhhhHHHHHHHhHHHhhhhhhhee--------ccccchhhhhHHHHHHH
Q 008355          179 SSFFNWFYLSINIGALVASSVLVWIQ--------MNVGWGWGFGIPAVAMA  221 (568)
Q Consensus       179 ~~~~~~~~~~~~ig~~~~p~~~~~i~--------~~~g~~~~f~~~~~~~~  221 (568)
                      ++..+..+.+..+|..+++.+..++.        ..+|||++|++.++..+
T Consensus       160 g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        160 AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            99999999999999988877666543        35799999998776543

>TIGR00898 2A0119 cation transport protein

Probab=99.92  E-value=3.5e-23  Score=224.08  Aligned_cols=388  Identities=14%  Similarity=0.117  Sum_probs=231.8

Q ss_pred             HHHHHhCCC---hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 008355           55 YLQKQLNQG---NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDAC  131 (568)
Q Consensus        55 yl~~~lg~s---~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  131 (568)
                      .+.+++|++   ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.++.+++               
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---------------  177 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---------------  177 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence            356789998   88999999999999999999999999999 99999999999999988888877               


Q ss_pred             CCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchh
Q 008355          132 HPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGW  211 (568)
Q Consensus       132 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~  211 (568)
                          .+++.+++.|++.|++.+...+....++.|++|+++      |+++.++...+..+|.+++|.++..+.+   ||+
T Consensus       178 ----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~  244 (505)
T TIGR00898       178 ----PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRW  244 (505)
T ss_pred             ----ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence                568889999999999999999999999999999998      9999999999999999999998776643   999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccc
Q 008355          212 GFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKF  291 (568)
Q Consensus       212 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~  291 (568)
                      .|++.++..++..+..++.++..+....+++ .++..+.+....+......++   ...+...+++.+.      .  + 
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~------~--~-  311 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPA---EVLSLSLEKDLSS------S--K-  311 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCH---HHHhhhhhhhhhh------c--c-
Confidence            9998877666555554433221111111111 112222222222211111000   0000000000000      0  0 


Q ss_pred             hhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCch
Q 008355          292 KFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSA  371 (568)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (568)
                                       .+.++++..+++ ..++..+.....+....   ..+... ..+. .      ..+    ....
T Consensus       312 -----------------~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~---~~~~~~-~~~~-~------~~~----~~~~  358 (505)
T TIGR00898       312 -----------------KQYSFLDLFRTP-NLRKTTLCLMMLWFTTA---FSYYGL-VLDL-G------NLG----GNIY  358 (505)
T ss_pred             -----------------CCCcHHHHhCCh-HHHHHHHHHHHHHHHHH---HHHHHH-hccc-c------ccC----CChH
Confidence                             000111000000 11111111111111111   111100 0000 0      011    0111


Q ss_pred             hhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceee
Q 008355          372 SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMT  451 (568)
Q Consensus       372 ~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (568)
                      .......+..+....+..+    +.+|.+       +++.+.+++++.+++++.......                  ..
T Consensus       359 ~~~~~~~~~~i~~~~~~~~----l~dr~g-------rr~~~~~~~~~~~~~~l~~~~~~~------------------~~  409 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLL----LIDRLG-------RRYTMAASLLLAGVALLLLLFVPV------------------DL  409 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHhC-------CHHHHHHHHHHHHHHHHHHHHcCC------------------Cc
Confidence            1111122222223333333    445533       334566777777777665554321                  12


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccc
Q 008355          452 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRG  531 (568)
Q Consensus       452 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~  531 (568)
                      .++.+...++.+++....++..+.+..|.+|++.|++++|+.++...+|++++|.+.+ +.+..                
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~----------------  472 (505)
T TIGR00898       410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKW----------------  472 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHH----------------
Confidence            2334444555667777777888999999999999999999999999999999999888 43211                


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhceeccccc
Q 008355          532 HLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATG  565 (568)
Q Consensus       532 ~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~  565 (568)
                       ....+++++++++++.+..+ +.||+++++.+|
T Consensus       473 -~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~  504 (505)
T TIGR00898       473 -LFLPLVLFGGLALLAGILTL-FLPETKGVPLPE  504 (505)
T ss_pred             -HhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence             12346677777777765544 567887776654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=1.6e-22  Score=214.48  Aligned_cols=175  Identities=18%  Similarity=0.184  Sum_probs=130.6

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhC---CChhhhhhhHHHH---HHHHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLN---QGNVTASNNVTNW---SGTCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~g~~~~~~---~~~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      .+....++.+++...... ..+..+++.++++   .+..+.+.+.+.+   .++..++.+++|+++||+ |||+++..+.
T Consensus        23 ~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~  100 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISV  100 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence            344444556676666655 5666678888874   4555444444444   444448999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      +++++++++++++.+....           .......+++.|+++|+|.|+..|...++++|++|+++      |+++.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~  163 (432)
T PRK10406        101 CMMCFGSLVIACLPGYETI-----------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYAS  163 (432)
T ss_pred             HHHHHHHHHHhhcCCchhH-----------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHH
Confidence            9999999998887221100           00123568899999999999999999999999999988      999999


Q ss_pred             hHHHHHHHhHHHhhhhhhhee--------ccccchhhhhHHHHHHHHH
Q 008355          184 WFYLSINIGALVASSVLVWIQ--------MNVGWGWGFGIPAVAMAIA  223 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~--------~~~g~~~~f~~~~~~~~~~  223 (568)
                      +.+.+.+.|..+++.+...+.        ..+|||++|++.++..++.
T Consensus       164 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        164 FQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            998888899888887655443        2579999999877655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.92  E-value=6.1e-23  Score=215.07  Aligned_cols=173  Identities=16%  Similarity=0.247  Sum_probs=150.6

Q ss_pred             CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHH
Q 008355           25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI  104 (568)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~  104 (568)
                      +.+|+.+...++..+.+.+..+......+ .+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            35577777888888888888777666555 56788999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008355          105 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW  184 (568)
Q Consensus       105 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (568)
                      +.+++.++++++                   .+.+.+++.|++.|++.+...+...+++.|++|+++      |+++.++
T Consensus        86 ~~~~~~~~~~~~-------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~  140 (405)
T TIGR00891        86 LFSAGTLACGFA-------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGL  140 (405)
T ss_pred             HHHHHHHHHHHh-------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHH
Confidence            999988888876                   457889999999999999999999999999999988      9999999


Q ss_pred             HHHHHHHhHHHhhhhhhheecccc--chhhhhHHHHHHHHHH
Q 008355          185 FYLSINIGALVASSVLVWIQMNVG--WGWGFGIPAVAMAIAV  224 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~~~~i~~~~g--~~~~f~~~~~~~~~~~  224 (568)
                      .+.+.++|..++|.+++.+.+..+  |++.|++.++..++.+
T Consensus       141 ~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       141 LISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            999999999999999998877666  9999987665444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.92  E-value=1.2e-23  Score=225.24  Aligned_cols=173  Identities=13%  Similarity=0.045  Sum_probs=135.5

Q ss_pred             ehhHhhHHHHHHHHHHHHHH---HHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMST---NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .+.++...++..+..|....   ...+.+.+++|++..+.|++.+++.+++.+++++.|+++||+ |||+++..+.++.+
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~  105 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHH
Confidence            33344444444444443322   224467789999999999999999999999999999999999 99999999888888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+.++.....              ...+.+.+++.|+++|++.+...|....+++|++|+++      |+++++++..
T Consensus       106 ~~~~~~~~~~~~--------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~  165 (467)
T PRK09556        106 ICMLGFGASLGS--------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNI  165 (467)
T ss_pred             HHHHHHHHHHhc--------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeec
Confidence            777766653110              01468889999999999999999999999999999999      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccc---cchhhhhHHHHHHHHHH
Q 008355          188 SINIGALVASSVLVWIQMNV---GWGWGFGIPAVAMAIAV  224 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~---g~~~~f~~~~~~~~~~~  224 (568)
                      +.++|+.+++.+..++.+..   +|+..|.+.++..++..
T Consensus       166 ~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~  205 (467)
T PRK09556        166 SHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIG  205 (467)
T ss_pred             ccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence            99999999999887665543   58888877665544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=1.8e-22  Score=212.30  Aligned_cols=166  Identities=14%  Similarity=0.089  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 008355           36 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL  115 (568)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~  115 (568)
                      +.+++...+...+.+.++. +.+++|.|..+.++..+.+.++..++.++.|+++||+ |||+.+..+.++.+++.+++..
T Consensus        20 l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~   97 (406)
T PRK15402         20 LFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILL   97 (406)
T ss_pred             HHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHH
Confidence            3333333444555555554 5578999999999999999999999999999999999 9999999999988888888877


Q ss_pred             hhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHH
Q 008355          116 TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALV  195 (568)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  195 (568)
                      +                   .+.+.+++.|+++|++.+...+...+++.|.+|+++      |.++.++......+|..+
T Consensus        98 ~-------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~  152 (406)
T PRK15402         98 A-------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLL  152 (406)
T ss_pred             H-------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHH
Confidence            6                   457789999999999999888888999999999887      899999988888899999


Q ss_pred             hhhhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          196 ASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       196 ~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      +|.+++++.+..+|++.|++.++..++..+..+
T Consensus       153 g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        153 GPLVGAALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            999999998889999999887766665554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=2.7e-23  Score=215.15  Aligned_cols=157  Identities=17%  Similarity=0.142  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008355           44 AYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLK  123 (568)
Q Consensus        44 ~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  123 (568)
                      ..|.. ..+.+++.+++|+|..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.++++++       
T Consensus        18 ~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~-------   88 (377)
T TIGR00890        18 YVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA-------   88 (377)
T ss_pred             HHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH-------
Confidence            34444 4455678889999999999999999999999999999999999 99999999999999999988887       


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhe
Q 008355          124 PSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI  203 (568)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i  203 (568)
                                  ++.+.+++.|++.|++.+...+.....+.+++| ++      |+++.++...+.++|..+++.+.+.+
T Consensus        89 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~  149 (377)
T TIGR00890        89 ------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSV  149 (377)
T ss_pred             ------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHH
Confidence                        568889999999999999888888888888886 45      89999999999999998877777777


Q ss_pred             eccccchhhhhHHHHHHHHHHHHHH
Q 008355          204 QMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       204 ~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      .+..|||+.|++.++..++..+..+
T Consensus       150 ~~~~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890       150 INLEGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHH
Confidence            7778999999988776655544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=1.2e-22  Score=213.99  Aligned_cols=177  Identities=12%  Similarity=0.111  Sum_probs=149.0

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      +|+.++.+++..+++......+.. ..+.+++++|++..+.|++.+++.++..+++++.|+++||+ |||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence            456556666666665555554444 44578999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      .++..+++++                   ++.+.+++.|++.|++.|...|....++.|++|+++      |++++++++
T Consensus        84 ~~~~~~~~~~-------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~  138 (412)
T TIGR02332        84 GIASTATMFA-------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFM  138 (412)
T ss_pred             HHHHHHHHHh-------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence            9999999887                   557889999999999999999999999999999988      999999999


Q ss_pred             HHHHHhHHHhhhhhhheec------cccchhhhhHHHHHHHHHHHHHHhc
Q 008355          187 LSINIGALVASSVLVWIQM------NVGWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~------~~g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      .+.++|..++|.+++++.+      ..|||+.|++.++..++..++..+.
T Consensus       139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       139 IAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999988753      4699999999776655544444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=2.6e-23  Score=213.47  Aligned_cols=169  Identities=19%  Similarity=0.345  Sum_probs=147.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008355           35 LGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT  114 (568)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~  114 (568)
                      ++..++..+......+.++.++.+++|.+..+.+++.+++.+...++.++.|+++||+ |||+++.++.++.+++..+..
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4566777777777777777688899999999999999999999999999999999999 999999999999999866666


Q ss_pred             HhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHH
Q 008355          115 LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGAL  194 (568)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  194 (568)
                      ++                   .+.+.+++.|++.|++.+...+...+++.|++|+++      |++++++.+...++|..
T Consensus        81 ~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~  135 (352)
T PF07690_consen   81 FA-------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSI  135 (352)
T ss_dssp             HH-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHH
T ss_pred             hh-------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhh
Confidence            54                   235589999999999999999999999999999988      99999999999999999


Q ss_pred             HhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          195 VASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       195 ~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      ++|.+++.+.+.++|++.|++.++..++..++...
T Consensus       136 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~  170 (352)
T PF07690_consen  136 LGPLLGGFLISYFGWRWAFLISAILSLIAAILFIL  170 (352)
T ss_dssp             HHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhhhhhhccccccccccccchhhhhhhhHhh
Confidence            99999999999999999999988877777654333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=8.1e-23  Score=216.25  Aligned_cols=166  Identities=14%  Similarity=0.192  Sum_probs=145.7

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      +++.+....+..+.+.+..+.. .+..+++++++|.|..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            3555666667777777766655 4444567789999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      +++.++++++                   .+.+.++++|+++|++.|...+....++.|.+|+++      |+++.++.+
T Consensus        94 ~~~~~~~~~~-------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~  148 (426)
T PRK12307         94 SVGTGLSGLA-------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLV  148 (426)
T ss_pred             HHHHHHHHHH-------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHH
Confidence            9999988887                   458889999999999999999999999999999988      999999999


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhhhHHHHH
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVA  219 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~  219 (568)
                      .+..+|..++|.+.+.+.+.+|||+.|++.++.
T Consensus       149 ~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        149 SGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             HHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            999999999999999998889999999875543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=1.8e-22  Score=217.19  Aligned_cols=404  Identities=14%  Similarity=0.097  Sum_probs=239.1

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      +..+++..++..+........+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            34455556666665554444444 56678999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHH
Q 008355          111 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN  190 (568)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (568)
                      ++++.+                   ++...++++|+++|++.+...+...+++.|.+|+++      |++++++++....
T Consensus        82 ~~~~~~-------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~  136 (485)
T TIGR00711        82 LLCGVA-------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVL  136 (485)
T ss_pred             HHHhCc-------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence            988876                   468889999999999999999999999999999888      9999999999999


Q ss_pred             HhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhc--ccccCCcchh
Q 008355          191 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKS--NVVVPADKSL  268 (568)
Q Consensus       191 ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  268 (568)
                      +|..++|.+++++.+++||++.|++.++..++..+......++.++++.++  . +..+.........  .....+.++.
T Consensus       137 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-d~~g~~l~~~~~~~~~~~~~~~~~~  213 (485)
T TIGR00711       137 VAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASEN--F-DFLGLLLLSVGLGSLLYGLSEGPER  213 (485)
T ss_pred             HHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCC--C-cHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999887666555554444333322111111  1 1111110000000  0000000000


Q ss_pred             hhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhcccc
Q 008355          269 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMS  348 (568)
Q Consensus       269 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (568)
                      -+..++.......     . ......  ...... ..   .+.|..+.  +..++++.....+........++......+
T Consensus       214 ~~~~~~~~~~~~~-----~-~~~~~~--~~~~~~-~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  279 (485)
T TIGR00711       214 GWFDSNEILILSI-----T-GLVAII--AFVVWE-LT---DDNPLVDL--RLFKYRNFTIGCVYMSLLGLGLYGSFYLLP  279 (485)
T ss_pred             CCCCchHHHHHHH-----H-HHHHHH--HHHHHH-Hc---CCCCccCH--HHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000000000     0 000000  000000 00   01111000  000111111111111111111111111111


Q ss_pred             ceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008355          349 TMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI  428 (568)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  428 (568)
                      .++ ....+.+.       ...+.......+..++..++..+    +.+|       .++++.+.++.++.+++.+.+..
T Consensus       280 ~~~-~~~~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~g~~~~~~~~~~~~~  340 (485)
T TIGR00711       280 LYL-QQVLGYTA-------LQAGLHILPVGLAPMLSSPIAGR----MGDK-------IDPRKLVTIGLILYAVGFYWRAF  340 (485)
T ss_pred             HHH-HHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHH----HHhh-------cCcHHHHHHHHHHHHHHHHHHhc
Confidence            111 11000000       01122223333444445555444    3444       34445677787777777665542


Q ss_pred             HHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008355          429 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLV  508 (568)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~  508 (568)
                      ..                ....+.+..+...++.+++.+...+.......+..|++.||.++|+.++.+.+|+.+|+.+.
T Consensus       341 ~~----------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       341 TF----------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALI  404 (485)
T ss_pred             cC----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            11                01124445555677889999988888888888999999999999999999999999999998


Q ss_pred             HHhhh
Q 008355          509 TIVTK  513 (568)
Q Consensus       509 ~~i~~  513 (568)
                      +.+.+
T Consensus       405 g~~~~  409 (485)
T TIGR00711       405 TTILT  409 (485)
T ss_pred             HHHHH
Confidence            87764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=7.3e-22  Score=206.84  Aligned_cols=174  Identities=9%  Similarity=0.104  Sum_probs=145.7

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      +++|..+..++..++.....+..-..+|. +.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            34566667777777776766655555555 6678999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++..++.++                   ++.+.+++.|+++|++.|...+...+++.|.+|+++      |+++++..
T Consensus        82 ~~i~~~l~~~~-------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~  136 (394)
T PRK03699         82 MILAVAGLMFS-------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFT  136 (394)
T ss_pred             HHHHHHHHHHc-------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHH
Confidence            99988888876                   457889999999999999999999999999998887      99999998


Q ss_pred             HHHHHHhHHHhhhhhhheec-cccchhhhhHHHHHHHHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQM-NVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~-~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      +...++|+.++|.+.+++.. ..|||+.|.+.++..++..++
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        137 DSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            88889999999998887654 579999998877655544433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.91  E-value=1.1e-22  Score=217.69  Aligned_cols=147  Identities=12%  Similarity=0.184  Sum_probs=129.3

Q ss_pred             HhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchh
Q 008355           59 QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQT  138 (568)
Q Consensus        59 ~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (568)
                      ++|++..+.|++.+++.+++.++++++|+++||+ |||+++..+.++.+++.+++..+..                 .+.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~  131 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-----------------GGI  131 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH-----------------cCc
Confidence            6889999999999999999999999999999999 9999999999988888877755421                 235


Q ss_pred             HHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccc-cchhhhhHHH
Q 008355          139 AVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV-GWGWGFGIPA  217 (568)
Q Consensus       139 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~-g~~~~f~~~~  217 (568)
                      ..+++.|+++|++.+...|....+++|++|+++      |+++.++.+.+.++|..++|.+++++.+.+ ||++.|++.+
T Consensus       132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~  205 (465)
T TIGR00894       132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG  205 (465)
T ss_pred             hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence            678999999999999999999999999999998      999999999999999999999999998884 9999999887


Q ss_pred             HHHHHHHHHHHh
Q 008355          218 VAMAIAVVFFFS  229 (568)
Q Consensus       218 ~~~~~~~~~~~~  229 (568)
                      +..++..+..+.
T Consensus       206 ~~~~~~~~~~~~  217 (465)
T TIGR00894       206 IVGCAWSLLWFV  217 (465)
T ss_pred             HHHHHHHHHHHH
Confidence            765555444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.91  E-value=4.9e-22  Score=207.24  Aligned_cols=172  Identities=10%  Similarity=0.123  Sum_probs=151.3

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.++.+....++.....+...+.+|. +++++|.+..+.|+..+.+.++..++.++.|+++||+ |||+++.++.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            45677777788888887777777765 5678999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +.++++++                   ++.+.+++.|++.|++.+...+....++.|++|+++      |+++++++..+
T Consensus        81 ~~~l~~~~-------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  135 (382)
T PRK10091         81 GNAMFTLS-------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSG  135 (382)
T ss_pred             HHHHHHHh-------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHH
Confidence            99988887                   568889999999999999888888888999998877      99999999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      ..+|..++|.+++++.+.+|||+.|++.++..++..+..
T Consensus       136 ~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~  174 (382)
T PRK10091        136 MTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI  174 (382)
T ss_pred             HHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998999999998877655554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.91  E-value=4.8e-22  Score=207.27  Aligned_cols=157  Identities=11%  Similarity=0.059  Sum_probs=140.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|.++.+++..++..+....+.+.+|.|++ ++|.|..++|++.+.+.++..++.++.|+++||+ |||+++..+.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            456889999999999999888899998876 5899999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++...++++                   ++.+.+++.|+++|++.+...|...+.+.+..++++      |++++++++.
T Consensus        83 ~~~~~~~~~-------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  137 (381)
T PRK03633         83 AGCAGLGLM-------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMM  137 (381)
T ss_pred             HHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHH
Confidence            998888877                   458889999999999999988888888888888877      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchh
Q 008355          188 SINIGALVASSVLVWIQMNVGWGW  211 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~  211 (568)
                      +.++|..+||.+++.+.+...+..
T Consensus       138 ~~~~g~~~g~~~~~~l~~~~~~~~  161 (381)
T PRK03633        138 VYYLGTVLGQLLVSKVSTELMSVL  161 (381)
T ss_pred             HHHHHHHHHHHHHhcccccccchH
Confidence            999999999999998877644433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.2e-22  Score=211.04  Aligned_cols=395  Identities=11%  Similarity=0.087  Sum_probs=246.8

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 008355           68 SNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYL  147 (568)
Q Consensus        68 g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  147 (568)
                      +.+++++.++++++...+|+++||+ |||..+.+..++..++.+++.++...                ....+++++|++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~----------------~~~e~li~GR~i  125 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA----------------PSFEMLILGRLI  125 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHH
Confidence            5567789999999999999999999 99999999999888888887776443                348899999999


Q ss_pred             HHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhh--heeccccchhhhhHHHHHHHHHHH
Q 008355          148 IALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV--WIQMNVGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       148 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~--~i~~~~g~~~~f~~~~~~~~~~~~  225 (568)
                      .|+..|......+-++.|..|.+-      ||.......++..+|-.++..++.  .+.+.-.|++.+....+..++.++
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~  199 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA  199 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999      999999999999999999977663  333455699888887776666655


Q ss_pred             HHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhh-hhhhhhhhccCccccCCccchhhhhhhh-hccc
Q 008355          226 FFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE-TADEECNIQGSRKLESTSKFKFFDKAAV-ETQT  303 (568)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~  303 (568)
                      +..+                                +||+|+++.. ++++|++++.+++.+..+...-.+.... ....
T Consensus       200 ~l~~--------------------------------~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~  247 (485)
T KOG0569|consen  200 LLPF--------------------------------LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEE  247 (485)
T ss_pred             HHhc--------------------------------CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            5433                                6788888877 6778877776665543332221111110 0001


Q ss_pred             cccCC-CCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCchhhccc-cchhh
Q 008355          304 DRVKG-SADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLF-DTLSV  381 (568)
Q Consensus       304 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  381 (568)
                      .+.++ ++..+++..+++ ..++.+...+.+..++.+........++.      ..-.+.  |++...+...+. .....
T Consensus       248 ~~~~~~~~~sl~~~~~~~-~lR~~~~i~~~v~~~qq~sGi~ai~~Yst------~i~~~a--G~~~~~a~~an~~~g~v~  318 (485)
T KOG0569|consen  248 EELEKKKQISLRQLLKNP-TLRRPLLIGIVVSFAQQFSGINAIFFYST------SIFKTA--GFTPEEAQYANLGIGIVN  318 (485)
T ss_pred             hccccccCCcHHHHhcCc-chhHHHHHHHHHHHHHHhcCcceeHHHHH------HHHHHc--CCCHHHHHHHHHHHHHHH
Confidence            10000 112222211111 11222222222222222111111111111      111111  111111111111 11222


Q ss_pred             hhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHH
Q 008355          382 IFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFI  461 (568)
Q Consensus       382 i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  461 (568)
                      ++.......    +.+|.+||       ..++.++.++.+..+++.........           ..+.-.+..+...++
T Consensus       319 ~~~t~~~~~----lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~y~~i~~~~~  376 (485)
T KOG0569|consen  319 LLSTLVSPF----LIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNS-----------FGSWLSYLCIAAIFL  376 (485)
T ss_pred             HHHHHHHHH----HHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHH
Confidence            222222222    45554444       46777877777776665554422000           000011122334444


Q ss_pred             HHHHHHH-HhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHH
Q 008355          462 VGCAEVF-TFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLL  540 (568)
Q Consensus       462 ~g~~~~~-~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  540 (568)
                      +.+...+ ..|..+-+.+|++|++.|+.++++....+++.+.+-....+.+.+..+     +            .+|+.+
T Consensus       377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----~------------~~filF  439 (485)
T KOG0569|consen  377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----P------------YVFILF  439 (485)
T ss_pred             HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c------------hhhHHH
Confidence            4444333 468999999999999999999999999999999888777777655442     1            468888


Q ss_pred             HHHHHHHHHHHHHHhhhceeccccc
Q 008355          541 TILSVLNFLVYLWIAKWFTYKKATG  565 (568)
Q Consensus       541 a~~~~v~~v~~~~~~~~~~~~~~~~  565 (568)
                      ++.+++..+..+...||+|+|+.+|
T Consensus       440 ~i~~~~~~i~~~~~lPETkgr~~~e  464 (485)
T KOG0569|consen  440 VIPLAIFLIYLYRYLPETKGRTPYE  464 (485)
T ss_pred             HHHHHHHHHHHHHhCcccCCCCHHH
Confidence            9999999999999999999987543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=8.4e-22  Score=206.14  Aligned_cols=165  Identities=13%  Similarity=0.073  Sum_probs=138.1

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |+.+.++...++..++.......++.. .+++|.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+.+++++
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            456677788888887666555555554 578999999999999999999999999999999999 999999999999988


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +.+.+..+                   .+   .++.|+++|++.+...|+..+++.|++|+++      |+++.++.+..
T Consensus        81 ~~~~~~~~-------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~  132 (393)
T PRK11195         81 GCLLMLFG-------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGS  132 (393)
T ss_pred             HHHHHHHH-------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence            88777665                   12   2778999999999999999999999999988      99999999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAV  224 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~  224 (568)
                      .++|..+||.++|++.+. .|+..+++.+...+++.
T Consensus       133 ~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~  167 (393)
T PRK11195        133 TIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999999999999998874 47777666554444343

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.90  E-value=3.4e-22  Score=214.19  Aligned_cols=174  Identities=11%  Similarity=0.094  Sum_probs=132.8

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      ++.+.......++.....+...+.++ ++.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++..+.++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            34444444445555555555444444 67789999999999999999999999999999999999 99999999999988


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.++++++                   .+...+++.|+++|++.+... ....+++|++|+++      |++++++.+.
T Consensus       113 ~~~~~~~~~-------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~~  166 (476)
T PLN00028        113 PAVFCMSLV-------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAAG  166 (476)
T ss_pred             HHHHHHHHh-------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHHH
Confidence            888888877                   457778899999999988654 35567899999988      9999999887


Q ss_pred             HHHHhHHHhhhhhhhee----c-----cccchhhhhHHHHHHHHHHHHHHh
Q 008355          188 SINIGALVASSVLVWIQ----M-----NVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~----~-----~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      ..++|..+++.+.+.+.    +     ..|||+.|++.++..++..+..++
T Consensus       167 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        167 WGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            77777777766554432    1     258999999887766555444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=7.6e-22  Score=202.00  Aligned_cols=346  Identities=19%  Similarity=0.270  Sum_probs=252.2

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT  111 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~  111 (568)
                      +.+....+.....++...+.++.|.+ ++|.+..+.+++.+...+...++.++.|+++||+ |||+.+..+.+...++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            44566777888888888888888765 5799999999999999999999999999999999 999999999999999998


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      .+...                   ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++
T Consensus        80 ~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  134 (352)
T cd06174          80 LLAFA-------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL  134 (352)
T ss_pred             HHHHh-------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence            88876                   458889999999999999999999999999999988      99999999999999


Q ss_pred             hHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhh
Q 008355          192 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE  271 (568)
Q Consensus       192 g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (568)
                      |..++|.+++.+.+..+|++.|++.++..++..+.....+             +                          
T Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--------------------------  175 (352)
T cd06174         135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------R--------------------------  175 (352)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------H--------------------------
Confidence            9999999999999988999999988776665554433221             0                          


Q ss_pred             hhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHh-hhHHHhhhccccce
Q 008355          272 TADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWAS-GIVFATVYSQMSTM  350 (568)
Q Consensus       272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  350 (568)
                                                                            +.......... ...........+.+
T Consensus       176 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (352)
T cd06174         176 ------------------------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLY  201 (352)
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                                                                  00000000000 11111111111111


Q ss_pred             eEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchH-HHHHHHHHHHHHHHHHHHH
Q 008355          351 FVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQ-RMGIGLLISIFSMVAAGIL  429 (568)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~  429 (568)
                      . .+..      + ......+.......+..++..++..+    +.+|.++|       + .+..+.++..++.+.....
T Consensus       202 ~-~~~~------~-~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~  262 (352)
T cd06174         202 L-QEVL------G-LSAAEAGLLLSLFGLGGILGALLGGL----LSDRLGRR-------RLLLLIGLLLAALGLLLLALA  262 (352)
T ss_pred             H-HHhc------C-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-------hHHHHHHHHHHHHHHHHHHHh
Confidence            1 1000      0 00011223334444445555555544    44553332       3 5667777777777766544


Q ss_pred             HHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008355          430 EVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVT  509 (568)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  509 (568)
                      +                    +.+.......+.+++.+...+....+..|..|++.|++.+|+.+....++..+++.+.+
T Consensus       263 ~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g  322 (352)
T cd06174         263 P--------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG  322 (352)
T ss_pred             c--------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3                    35566777888999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 008355          510 IVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYL  552 (568)
Q Consensus       510 ~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~  552 (568)
                      .+.+..      +|          ...|++.+++++++.+..+
T Consensus       323 ~l~~~~------~~----------~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         323 LLLDTG------GY----------GGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHhccc------Cc----------chHHHHHHHHHHHHHHHhe
Confidence            876522      22          3467777777777766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=1.5e-21  Score=203.36  Aligned_cols=175  Identities=14%  Similarity=0.103  Sum_probs=147.2

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      ++.++.+.+..+....+.....+.+| ++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            34344444445555555555555555 46778999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+++..+                   ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+.
T Consensus        82 ~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  136 (385)
T TIGR00710        82 LSSLGLALS-------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMP  136 (385)
T ss_pred             HHHHHHHHH-------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHH
Confidence            988888877                   457889999999999999999999999999999888      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      ..++|..++|.+++++.+.++|++.|++.++..++..+....
T Consensus       137 ~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       137 VLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998899999998877665555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=2.3e-21  Score=203.64  Aligned_cols=171  Identities=14%  Similarity=0.071  Sum_probs=143.4

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      ..+|++....++.++.....+....++++++ +++|.+..+.|+..+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence            4477888888999998888888888888888 56899999999999999999999999999999999 999999999998


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++.+++..... .              ..+.+.+++.|++.|+|.+...+...+.+.+.+|+++      |+++++++
T Consensus        88 ~~~~~~~~~~~~~-~--------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  146 (402)
T TIGR00897        88 WCVGHAAFIVFGL-G--------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWF  146 (402)
T ss_pred             HHHHHHHHHHHhc-c--------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHH
Confidence            8888765532210 0              0356778889999999998887778888889999888      99999999


Q ss_pred             HHHHHHhH-HHhhhhhhheeccccchhhhhHHHHH
Q 008355          186 YLSINIGA-LVASSVLVWIQMNVGWGWGFGIPAVA  219 (568)
Q Consensus       186 ~~~~~ig~-~~~p~~~~~i~~~~g~~~~f~~~~~~  219 (568)
                      +.+.++|. .++|.+++++.+.+||+..++.....
T Consensus       147 ~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       147 WAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99999996 68999999998888977666654433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=6.6e-22  Score=206.51  Aligned_cols=172  Identities=16%  Similarity=0.194  Sum_probs=143.7

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      ++.+...++..+.....++... ...+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence            4544555555555555554444 444566778999999999999999999999999999999999 99999999998888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+++...                   .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+.
T Consensus        94 ~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~  148 (398)
T TIGR00895        94 VFTLLCALA-------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFC  148 (398)
T ss_pred             HHHHHHHHc-------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhh
Confidence            888887766                   457788999999999999999999999999999888      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHH
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      +.++|..++|.+++++.+..||++.|++.++..++..++
T Consensus       149 ~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  187 (398)
T TIGR00895       149 GYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL  187 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence            999999999999999999999999999876444444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.90  E-value=1.6e-21  Score=204.19  Aligned_cols=175  Identities=11%  Similarity=0.095  Sum_probs=129.2

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHH-hhhhhHHHHhhhccCchHHHH-HHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCY-ITPLIGAFLADSYMGRFWTIA-SFSII  105 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~-i~~~~~G~laDr~~Grk~~~~-~~~~~  105 (568)
                      .+..+..+...++.+++.....+.++.|+++++|.|..++|+..+...+... +.++++|+ +||+ ||||.++ .+.+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~   91 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL   91 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence            3445777888999999999999999999999999999999999877655444 55555566 9999 9988754 44555


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhh--hhhhh
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK--SSFFN  183 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~  183 (568)
                      .+++.++.+++                   .+.+.+++.+.+.+...+...|....+..|..++++      |  +...+
T Consensus        92 ~~~~~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  146 (393)
T PRK15011         92 GVLACTLFAWN-------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSS  146 (393)
T ss_pred             HHHHHHHHHHh-------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHH
Confidence            55666666665                   345555544444443344667777787788766554      4  34457


Q ss_pred             hHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      +.+.+.++|..++|.+++++.+.+|||..|++.++..++..+....
T Consensus       147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            8888999999999999999999899999999887665555444443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.90  E-value=2.3e-22  Score=214.34  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=127.6

Q ss_pred             HHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 008355           54 NYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHP  133 (568)
Q Consensus        54 ~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  133 (568)
                      ..+.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..+++++++++                 
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-----------------  104 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS-----------------  104 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh-----------------
Confidence            345678999999999999999999999999999999999 99999999999999888888877                 


Q ss_pred             CCchhHHHHH-HHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhh
Q 008355          134 TGAQTAVTFV-ALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG  212 (568)
Q Consensus       134 ~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~  212 (568)
                        .+.+.+++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+.++|..++|.+++.+.+.+|||++
T Consensus       105 --~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~  175 (455)
T TIGR00892       105 --SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS  175 (455)
T ss_pred             --hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence              34666654 4688899998776677788889885 56      99999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcC
Q 008355          213 FGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       213 f~~~~~~~~~~~~~~~~~~  231 (568)
                      |++.++..+++.+..++.+
T Consensus       176 f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       176 FLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            9998876665554444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.90  E-value=9e-22  Score=207.94  Aligned_cols=397  Identities=8%  Similarity=-0.047  Sum_probs=227.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .+..+.+.+..++..++++...++++.|+++++|+|..++|++.+.+.++..+++++.|+++||+ |||+++.++..+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~   87 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL   87 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            34567777888888888888999999999999999999999999999999999999999999999 99999988766555


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++..........+.               -......+..+.++..+...+...+.+.++.+...+    .++..++..+.
T Consensus        88 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~g~~~~  148 (420)
T PRK09528         88 VLFGPFFIYVFAPL---------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSR----RSGFEYGRARM  148 (420)
T ss_pred             HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHh----hccccchhhHH
Confidence            44332211100000               000011222223333333333333333444332111    16778888888


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcch
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS  267 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (568)
                      ..++|..++|.+++++.+ .+|+++|++.++..++.+++.+..+++.++++...++                        
T Consensus       149 ~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  203 (420)
T PRK09528        149 WGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA------------------------  203 (420)
T ss_pred             hhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc------------------------
Confidence            899999999999998876 5899999887766655555544433321110000000                        


Q ss_pred             hhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhh-hHHHhhhcc
Q 008355          268 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASG-IVFATVYSQ  346 (568)
Q Consensus       268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  346 (568)
                              ++..        .++..+.+....                     .++ +++.......... ..+.....+
T Consensus       204 --------~~~~--------~~~~~~~~~~~~---------------------l~~-~~~~~l~l~~~~~~~~~~~~~~~  245 (420)
T PRK09528        204 --------LGAN--------ASAVSLKDALAL---------------------LKL-PKFWFLVLYVIGVACFYDVFDQQ  245 (420)
T ss_pred             --------hhcc--------cccccHHHHHHH---------------------ccC-CCeEeehHHHHHHHHHHHHHHHH
Confidence                    0000        000000000000                     000 0000011111111 111112222


Q ss_pred             ccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 008355          347 MSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAA  426 (568)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~  426 (568)
                      .+.++.....  +....   ....+.+.....+...+..++.++    +.+|.++       ++.+..+.++.+++.+..
T Consensus       246 ~~~~~~~~~~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~-------~~~~~~~~~l~~~~~~l~  309 (420)
T PRK09528        246 FPNFFASFFA--TPEQG---TRVFGYLNSFQVFLEALIMFFAPF----IINRIGA-------KNALLLAGTIMAVRIIGS  309 (420)
T ss_pred             HHHHHHHHHh--ccCcc---hHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCc-------chhhHHHHHHHHHHHHHH
Confidence            2222211100  00100   001122233333333344444444    5555433       345666777777766665


Q ss_pred             HHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHH-HHHHHHHHHHHHH
Q 008355          427 GILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL-SLTTVAVGNYLST  505 (568)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~lg~  505 (568)
                      +..+                    +.++++....+.+++.....+....++.+..|++.+++..+. +++...+|+.+++
T Consensus       310 ~~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~  369 (420)
T PRK09528        310 GFAT--------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLS  369 (420)
T ss_pred             Hhcc--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHH
Confidence            5432                    445555666777787777777788999999999999988766 6788899999999


Q ss_pred             HHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhce
Q 008355          506 LLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT  559 (568)
Q Consensus       506 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~  559 (568)
                      .+.|.+.+..      ||          +..|...+++.++..++.++..++.+
T Consensus       370 ~~~G~l~~~~------G~----------~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        370 TLAGNLYDSI------GF----------QGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHhh------Cc----------hHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999887643      23          45677778888777766666555433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.90  E-value=4e-21  Score=200.40  Aligned_cols=366  Identities=11%  Similarity=0.022  Sum_probs=229.1

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH-H
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC-L  108 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~-i  108 (568)
                      ..+.+.+..+....++-...+++|.|++ ++|+|..++|++.+++.+...+++++.|.++||+ ||+........... +
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l   82 (382)
T TIGR00902         5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAI   82 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence            3445666677777777778889999985 6899999999999999999999999999999999 98543322211111 1


Q ss_pred             HHH-HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          109 GMT-LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ..+ ++..+                   ++.+.+++.|++++.+.+...|...++..+.  +++      |++.++....
T Consensus        83 ~~~~~~~~~-------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~  135 (382)
T TIGR00902        83 FAAAFSAGA-------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRL  135 (382)
T ss_pred             HHHHHHHhh-------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHH
Confidence            111 22223                   4578888999999999888888888876553  344      8999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcch
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS  267 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (568)
                      ..++|..++|.+++++.+.+||+..|++.+...++.++ .+..+++.   ++++++.+                      
T Consensus       136 ~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~----------------------  189 (382)
T TIGR00902       136 IGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAIPE----------------------  189 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccccc----------------------
Confidence            99999999999999999999999998876554333222 22222211   01000000                      


Q ss_pred             hhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHH-HHHHHhhhHHHhhhcc
Q 008355          268 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRL-LPVWASGIVFATVYSQ  346 (568)
Q Consensus       268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  346 (568)
                             ++          .....                    .++    +-.++ ++.... ....+........+..
T Consensus       190 -------~~----------~~~~~--------------------~~~----~~l~~-~~~~~~l~~~~l~~~~~~~~~~~  227 (382)
T TIGR00902       190 -------DE----------SQGDS--------------------AFI----ALLKN-PMNLRFLAAVCLIQGAHAAYYGF  227 (382)
T ss_pred             -------cc----------cccch--------------------hHH----HHHcC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00          00000                    000    00011 122111 1111222222222222


Q ss_pred             ccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 008355          347 MSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAA  426 (568)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~  426 (568)
                      .+.++ .. .+.+..       ..+.+.....+..++...+.+    ++.+|       .++++.+.++.++.++.....
T Consensus       228 ~~~~l-~~-~g~s~~-------~~g~l~~~~~~~~i~~~~~~~----~l~~r-------~g~~~~l~~~~~~~~~~~~~~  287 (382)
T TIGR00902       228 SAIYW-QA-AGISAS-------ATGLLWGIGVLAEIIIFAFSN----KLFQN-------CSARDLLLISAIACVGRWAII  287 (382)
T ss_pred             HHHHH-HH-CCCCHh-------HHHHHHHHHHHHHHHHHHHhH----HHHhh-------CCHHHHHHHHHHHHHHHHHHH
Confidence            21111 11 111110       111122222222222222222    23444       566677888999998888777


Q ss_pred             HHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHH-HHHHHHHHHHH
Q 008355          427 GILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL-TTVAVGNYLST  505 (568)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~  505 (568)
                      ...+                    +.+.++....+.++..+...+....++.+. |++.|++++++++ ...++|..+|+
T Consensus       288 ~~~~--------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~  346 (382)
T TIGR00902       288 GAIE--------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFT  346 (382)
T ss_pred             HhHh--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6544                    556666677999999999999999999998 9999999999987 56789999999


Q ss_pred             HHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 008355          506 LLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLV  550 (568)
Q Consensus       506 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~  550 (568)
                      .++|.+.+..+                 ...|+..+++++++.++
T Consensus       347 ~~~G~l~~~~g-----------------~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       347 AFAGFIYPTLG-----------------AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHhcc-----------------HHHHHHHHHHHHHHHHH
Confidence            99999876541                 13577778887776543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=3.4e-21  Score=201.72  Aligned_cols=172  Identities=16%  Similarity=0.116  Sum_probs=146.5

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      .+|.++.+.+..++.........+.+|. +.+++|.|..+.+++.+.+.+...++.++.|+++||+ |||+.+..+.+..
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            4666777777777777776666666665 4578999999999999999999999999999999999 9999999999988


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      +++.+++..+                   ++.+.+++.|++.|++.+...+....+..|.+++++      |+++.++.+
T Consensus        84 ~~~~~~~~~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  138 (394)
T PRK11652         84 ILGTLVALFA-------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLN  138 (394)
T ss_pred             HHHHHHHHHH-------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence            8888887776                   457889999999999998887888888889888777      999999999


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHH
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~  225 (568)
                      .+..+|..++|.+++++.+..||++.|++.++..++..+
T Consensus       139 ~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        139 MGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            999999999999999998889999999987765544433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=211.46  Aligned_cols=398  Identities=12%  Similarity=0.112  Sum_probs=241.2

Q ss_pred             hhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHH
Q 008355           66 TASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL  145 (568)
Q Consensus        66 ~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (568)
                      +.+++.++..++..++.++.|+++|++ |||++++++.+++.+|.++++.+                   .+...++++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-------------------~~~~~l~~GR  149 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-------------------PSWYQLIVGR  149 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh-------------------hhHHHHHHHH
Confidence            348999999999999999999999999 99999999999999999999998                   5689999999


Q ss_pred             HHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc--ccchhhhhHHHHHHHHH
Q 008355          146 YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN--VGWGWGFGIPAVAMAIA  223 (568)
Q Consensus       146 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~--~g~~~~f~~~~~~~~~~  223 (568)
                      ++.|+|.|+....++.+++|..|++.      ||...+.++...++|..++.. .+....+  ++||..+.+..+..++.
T Consensus       150 ~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~  222 (513)
T KOG0254|consen  150 ILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC-INYGTSKVYAGWRIPLGLALIPAVIL  222 (513)
T ss_pred             HHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998      999999999999999999955 4444443  48998888777665555


Q ss_pred             HHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCC---ccchhhhhhhhh
Q 008355          224 VVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLEST---SKFKFFDKAAVE  300 (568)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~  300 (568)
                      .+.+++                                +||+|+++.++++.++++...+++...   +.....+..+..
T Consensus       223 ~~~~~~--------------------------------~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~  270 (513)
T KOG0254|consen  223 ALGMLF--------------------------------LPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIK  270 (513)
T ss_pred             HHHHHh--------------------------------CCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            544332                                456777777777766666555444331   111111111100


Q ss_pred             ccccccCC-CCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCchhhccccch
Q 008355          301 TQTDRVKG-SADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTL  379 (568)
Q Consensus       301 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (568)
                      ...+.... ....++++..  ....|+......+..++....     ....+.+. ...-...  +...+......+...
T Consensus       271 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG-----~~~~~~Y~-~~if~~~--g~~~~~~~~~~~~~~  340 (513)
T KOG0254|consen  271 LLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTG-----INYVFYYS-TTIFKSA--GLKSDTFLASIILGV  340 (513)
T ss_pred             HHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhC-----CceEEeeh-HHHHHhc--CCCCchHHHHHHHHH
Confidence            00000000 0111211111  122333332222222222211     11111111 1111111  121111111121112


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHH
Q 008355          380 SVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQY  459 (568)
Q Consensus       380 ~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  459 (568)
                      ..++...+...    +.+|.+||       ..+..|...+.+++++++.......+...       ......+..+....
T Consensus       341 v~~~~t~~~~~----lvd~~gRr-------~lll~s~~~m~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  402 (513)
T KOG0254|consen  341 VNFLGTLVATY----LVDRFGRR-------KLLLFGAAGMSICLVILAVVGVFALYYPN-------SSKGAGWLAIVFLC  402 (513)
T ss_pred             HHHHHHHHHHH----HHHHhccH-------HHHHHhHHHHHHHHHHHHHHHHHhccCCC-------cccchhHHHHHHHH
Confidence            22222222223    34443333       46788888888888877766532110000       00111222233333


Q ss_pred             HHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHH
Q 008355          460 FIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWL  539 (568)
Q Consensus       460 ~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~  539 (568)
                      +..........|..|.+..|..|.+.|+.+.++....+++.+.+-............                ....|+.
T Consensus       403 ~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~----------------~~~~f~~  466 (513)
T KOG0254|consen  403 LFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG----------------IGGTFGY  466 (513)
T ss_pred             HHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------ccchHHH
Confidence            344444555567888999999999999999999999998888665554443332110                0124666


Q ss_pred             HHHHHHHHHH-HHHHHhhhceecccccC
Q 008355          540 LTILSVLNFL-VYLWIAKWFTYKKATGR  566 (568)
Q Consensus       540 ~a~~~~v~~v-~~~~~~~~~~~~~~~~~  566 (568)
                      +++++.+... ..++..||+|+++.||.
T Consensus       467 f~~~~~~~~~~fv~~~~pETkg~sleei  494 (513)
T KOG0254|consen  467 FGGICLLSLIIFVFFFVPETKGLTLEEI  494 (513)
T ss_pred             HHHHHHHHHHHHheEEcccCCCCcHHHH
Confidence            7777777766 78888999999987753

>PRK15075 citrate-proton symporter; Provisional

Probab=99.89  E-value=8.6e-21  Score=201.28  Aligned_cols=172  Identities=14%  Similarity=0.106  Sum_probs=127.6

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhH-HHHHH-----HHHhhhhhHHHHhhhccCchHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNV-TNWSG-----TCYITPLIGAFLADSYMGRFWTIAS  101 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~-~~~~~-----~~~i~~~~~G~laDr~~Grk~~~~~  101 (568)
                      ++....+++..+++.+....+. ...+.+.++++.+..+.+... +...+     ...++.++.|+++||+ |||+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   91 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence            4455666667777776665544 444577888998887765433 22222     2236788999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhh
Q 008355          102 FSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF  181 (568)
Q Consensus       102 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (568)
                      +.++++++.++++++.+....           .......++++|+++|++.|...+....+++|++|+++      |+++
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~  154 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATI-----------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFY  154 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHH-----------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHH
Confidence            999999999999887221100           00001247899999999999999999999999999998      9999


Q ss_pred             hhhHHHHHHHhHHHhhhhhhhe--------eccccchhhhhHHHH
Q 008355          182 FNWFYLSINIGALVASSVLVWI--------QMNVGWGWGFGIPAV  218 (568)
Q Consensus       182 ~~~~~~~~~ig~~~~p~~~~~i--------~~~~g~~~~f~~~~~  218 (568)
                      +++.....++|..+++.+++.+        .+.+|||++|++..+
T Consensus       155 ~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        155 TSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            9998888888888887777654        246899999987543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=1.7e-21  Score=210.32  Aligned_cols=168  Identities=17%  Similarity=0.239  Sum_probs=146.9

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      .+++.+..+.+..++..+........+ +++.+++|+|..+.++..+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            346666677777777777766555544 457788999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++.++++++                   .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.
T Consensus        95 ~~~~~~~~~~~-------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~  149 (496)
T PRK03893         95 FSVGTLACGFA-------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFL  149 (496)
T ss_pred             HHHHHHHHHHH-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence            99998888877                   457889999999999999999999999999999988      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAM  220 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~  220 (568)
                      +.+.++|..++|.+.+.+.+.++|++.|++.++..
T Consensus       150 ~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        150 ISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999998755443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.89  E-value=1.4e-21  Score=207.68  Aligned_cols=154  Identities=16%  Similarity=0.152  Sum_probs=127.4

Q ss_pred             HHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 008355           52 LVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDAC  131 (568)
Q Consensus        52 l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  131 (568)
                      ..+++++ .|++..+.++..+++.++..++.++.|+++||+ |||+.+..+.++.+++..+++...+.            
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc------------
Confidence            3446665 699999999999999999999999999999999 99999999988888887776654211            


Q ss_pred             CCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhee-ccccch
Q 008355          132 HPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ-MNVGWG  210 (568)
Q Consensus       132 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~-~~~g~~  210 (568)
                         ..+...+++.|++.|++.|...+.....+.|++|+++      |++++++++...++|+.++|.+.+... ...+||
T Consensus       115 ---~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~  185 (438)
T TIGR00712       115 ---TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH  185 (438)
T ss_pred             ---cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence               1346678889999999999999989999999999998      999999999999999999988776544 456899


Q ss_pred             hhhhHHHHHHHHHHHHHH
Q 008355          211 WGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       211 ~~f~~~~~~~~~~~~~~~  228 (568)
                      +.|++.++..++..+..+
T Consensus       186 ~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       186 AALYFPAICAIIVALFAF  203 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999987766655444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.88  E-value=1.3e-20  Score=198.31  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 008355           48 MSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCD  127 (568)
Q Consensus        48 ~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  127 (568)
                      ..+.+|. +.+++|.+..+.++..+++.++..+++++.|+++||+ |||+++..+.++++++.+.+..+           
T Consensus        35 ~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a-----------  101 (413)
T PRK15403         35 IQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT-----------  101 (413)
T ss_pred             hccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-----------
Confidence            3334443 6678999999999999999999999999999999999 99999999999999999888877           


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccc
Q 008355          128 KDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV  207 (568)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~  207 (568)
                              ++.+.++++|+++|++.+...+....++.|.+|+++      |++.++++....++|..+||.+++.+.+..
T Consensus       102 --------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~  167 (413)
T PRK15403        102 --------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFV  167 (413)
T ss_pred             --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    568889999999999998766777788899999888      999999999999999999999999998888


Q ss_pred             cchhhhhHHHHHHHHHHHHHH
Q 008355          208 GWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       208 g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      |||+.|++.++..+++.+..+
T Consensus       168 gw~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        168 HWKVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            999999988876666554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=9.2e-22  Score=203.85  Aligned_cols=151  Identities=15%  Similarity=0.190  Sum_probs=133.5

Q ss_pred             HHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 008355           52 LVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDAC  131 (568)
Q Consensus        52 l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  131 (568)
                      ..+++++++|++..+.+++.+++.++..++.++.|+++||+ |||+.+..+.++.+++.++++++               
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---------------   80 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS---------------   80 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence            34578889999999999999999999999999999999999 99999999999999999988887               


Q ss_pred             CCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhh-hhhhheeccccch
Q 008355          132 HPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVAS-SVLVWIQMNVGWG  210 (568)
Q Consensus       132 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p-~~~~~i~~~~g~~  210 (568)
                          .+.+.+++.|++.|++.+...+...+++.|++|+++      |++++++.+...++|..++| .+++.+.+..+|+
T Consensus        81 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  150 (379)
T TIGR00881        81 ----TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWH  150 (379)
T ss_pred             ----hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCch
Confidence                457889999999999999999999999999999988      99999999999999999999 5667777788999


Q ss_pred             hhhhHHHHHHHHHHHHHH
Q 008355          211 WGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       211 ~~f~~~~~~~~~~~~~~~  228 (568)
                      +.|++.++..++..+...
T Consensus       151 ~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881       151 WVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             hHHHHHHHHHHHHHHHHh
Confidence            999887765555444333

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=1.5e-20  Score=197.28  Aligned_cols=163  Identities=15%  Similarity=0.219  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHH--HHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008355           41 ERLAYYGMSTNLVNY--LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTAS  118 (568)
Q Consensus        41 ~~~~~~~~~~~l~~y--l~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~  118 (568)
                      ....+...-.+.|.+  +++++|.+..+.+++.+++.++..++.++.|+++||+ |||+.+..+.++..++..++..+  
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--   91 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV--   91 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh--
Confidence            333344344444433  6778999999999999999999999999999999999 99999999998888888887776  


Q ss_pred             ccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhh
Q 008355          119 VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASS  198 (568)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~  198 (568)
                                       .+.+.+++.|+++|++.+...+...+++.|.+|+++      +++.++......++|..++|.
T Consensus        92 -----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~  148 (401)
T PRK11043         92 -----------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPL  148 (401)
T ss_pred             -----------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             457889999999999988888888889999999887      888899988889999999999


Q ss_pred             hhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          199 VLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       199 ~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      +++++.+.+||++.|++.++..++..+..+.
T Consensus       149 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        149 LGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998877665555444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.88  E-value=1.8e-20  Score=194.82  Aligned_cols=156  Identities=17%  Similarity=0.221  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 008355           46 YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS  125 (568)
Q Consensus        46 ~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  125 (568)
                      ....+.+|.+. +++|+|..+.+++.+++.++..++.++.|+++||+ |||+++..+.++.+++..++..+         
T Consensus         8 ~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~---------   76 (377)
T PRK11102          8 DMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA---------   76 (377)
T ss_pred             HHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH---------
Confidence            34456777665 56999999999999999999999999999999999 99999999999999999888877         


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheec
Q 008355          126 CDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM  205 (568)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~  205 (568)
                                .+.+.+++.|+++|++.+...+...+++.|.+|+++      |++++++.+...++|..++|.+++.+.+
T Consensus        77 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~  140 (377)
T PRK11102         77 ----------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLV  140 (377)
T ss_pred             ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      457788999999999999999999999999999888      9999999999999999999999999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHH
Q 008355          206 NVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       206 ~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      ..+|++.|++.++..++..+...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102        141 WFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHH
Confidence            89999999887766655544433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.88  E-value=5e-20  Score=194.16  Aligned_cols=389  Identities=12%  Similarity=0.081  Sum_probs=226.0

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCc-hHHHHHHHHHHHHHHH
Q 008355           33 FILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR-FWTIASFSIIYCLGMT  111 (568)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Gr-k~~~~~~~~~~~i~~~  111 (568)
                      -+.+..++...++-...++++.|+++++|++..++|++.+++.++..+++++.|+++||+ || |+++.++.+..++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence            355667777777777889999999999999999999999999999999999999999998 65 7788887777777777


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCccccccccccc--------CCCCCchhhhhhhhhhh
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQ--------FDETDDGEREKKSSFFN  183 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~--------~~~~~~~~~~~r~~~~~  183 (568)
                      +..+.                   .+.+.+++.|++.+++.+...+...++..+.        .....      |.+.+|
T Consensus        85 ~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~~G  139 (418)
T TIGR00889        85 FAAQV-------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRVMG  139 (418)
T ss_pred             HHHHh-------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceeeeh
Confidence            76665                   3467788888888888777666655543222        22222      555554


Q ss_pred             hHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCC-ChhHHHHHHHHHHHhhccccc
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGG-SPLTRIMQVIVASFRKSNVVV  262 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  262 (568)
                            .+|..+||.+++.+.....|. +|++.++..++..+..+. .++.++.++++ .+..+                
T Consensus       140 ------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~----------------  195 (418)
T TIGR00889       140 ------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKMSIKV----------------  195 (418)
T ss_pred             ------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccccCHHH----------------
Confidence                  478888888888774433344 355555444444433222 22211000000 00000                


Q ss_pred             CCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHH-HHHHHhhhHHH
Q 008355          263 PADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRL-LPVWASGIVFA  341 (568)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  341 (568)
                               .                .+....+   .                     .++ ++.... +..++......
T Consensus       196 ---------~----------------~~~~~~~---~---------------------~k~-~~~~~~~~~~~~~~~~~~  225 (418)
T TIGR00889       196 ---------M----------------LGLDAFI---L---------------------FKN-KRMAIFFFFSMLLGAPLQ  225 (418)
T ss_pred             ---------H----------------hhhhHHH---H---------------------hcC-CCeeeHHHHHHHHHhHHH
Confidence                     0                0000000   0                     000 000001 11111111111


Q ss_pred             hhhccccceeEeecccccCCCCCCcc-cCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 008355          342 TVYSQMSTMFVLQGNTMDQHMGPNFK-IPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI  420 (568)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~  420 (568)
                      ......+.+....  +.+....+++. ...+.......+..++...+.++    +.+|       .++++.+.++.++.+
T Consensus       226 ~~~~~~~~~~~~~--g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~----l~dr-------~g~r~~l~~~~~~~~  292 (418)
T TIGR00889       226 ITNIFGNGFLHEF--GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPF----FLKR-------FGIKKVMLLSLVAWA  292 (418)
T ss_pred             HHHHhHHHHHHHh--cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHH-------hCcHHHHHHHHHHHH
Confidence            1111111111100  00000000000 00112222223333333333333    4555       344456777887777


Q ss_pred             HHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHH-HHHHH
Q 008355          421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL-TTVAV  499 (568)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~l  499 (568)
                      +++........                .....+.++...++.+++++...+....++.|.+|++.|++++|+.+ ....+
T Consensus       293 v~~~l~~~~~~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~l  356 (418)
T TIGR00889       293 LRFGFFAYGDP----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGF  356 (418)
T ss_pred             HHHHHHHHcCc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhh
Confidence            77655543210                00123344556678888888888888999999999999999999997 56889


Q ss_pred             HHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhcee
Q 008355          500 GNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY  560 (568)
Q Consensus       500 g~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~  560 (568)
                      |..+||.+.|.+.+..+..+.          .+++..|.+.++++++..+.++++.++.++
T Consensus       357 g~~iGp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       357 GSLLGYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            999999999998775431110          124567888888888888888888776544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.88  E-value=8.6e-22  Score=197.92  Aligned_cols=184  Identities=19%  Similarity=0.194  Sum_probs=164.7

Q ss_pred             cCCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           24 KTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      .++.++.+.++++..++++..-|.+-..+ .-.++.+|+++.+.|++...+.+.++++.|+.|+++||+ .||+++.+|.
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~  105 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGI  105 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHH
Confidence            33446678888899999999998776544 457888999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      .++.++.+..++.                   ..++++.+.|.+.|+|.+...|..+++++|.||.++      |++.++
T Consensus       106 ~iW~~Av~~~~fs-------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~  160 (493)
T KOG1330|consen  106 FIWTLAVFASGFS-------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLG  160 (493)
T ss_pred             HHHHHHHHHHHHH-------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHH
Confidence            9999999999988                   569999999999999999999999999999999998      999999


Q ss_pred             hHHHHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHhcCcee
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRLY  234 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~  234 (568)
                      ++|+++++|..+|.+.+..+.+..+ |||+|+..+++.++..++.+++.++.
T Consensus       161 ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  161 IFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             HhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence            9999999999999999999988776 99999999988777777666665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.88  E-value=3.9e-20  Score=197.80  Aligned_cols=361  Identities=14%  Similarity=0.115  Sum_probs=241.4

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |+...+...+++.+++......-++-++. ++.-|+..++++..+..+-..+..+++|.++||+ .|||+++.+-++.++
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            44556667777778777766666665554 4667889999999999999999999999999999 999999999988777


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      ..+.+++......              .+.+.+++.-++.|++.+...|+.++++.+..|+++      ..++.++.++.
T Consensus        88 ~~~~L~~l~~~~~--------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~  147 (524)
T PF05977_consen   88 VALLLAVLAFFGL--------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSIS  147 (524)
T ss_pred             HHHHHHHHHHhCc--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHH
Confidence            6666554432222              467888888999999999999999999999999988      99999999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchh
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSL  268 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (568)
                      .|+...+||.++|.+...+|-.++|.+.++..++.+..+...+++.++   +..+.++..+.+...++.           
T Consensus       148 ~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~G~ry-----------  213 (524)
T PF05977_consen  148 FNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALREGLRY-----------  213 (524)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHHHHHH-----------
Confidence            999999999999999998999999999887776665554444432211   111111111111111110           


Q ss_pred             hhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhcccc
Q 008355          269 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMS  348 (568)
Q Consensus       269 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (568)
                                                                          +.+.+.+...+.......++......+.
T Consensus       214 ----------------------------------------------------v~~~~~l~~~l~~~~~~~l~~~a~~aLl  241 (524)
T PF05977_consen  214 ----------------------------------------------------VRSSPPLRSVLLRSFLFNLFASAVWALL  241 (524)
T ss_pred             ----------------------------------------------------HhcchHHHHHHHHHHHHHHhhhHHHHhh
Confidence                                                                0000111111111111111111111111


Q ss_pred             ceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008355          349 TMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI  428 (568)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  428 (568)
                      ..+..      ..++ +-....+.+....+++.++.+.+..+    +.+|       .+..+.+..+.++.+++++.+++
T Consensus       242 Pl~a~------~~l~-~~a~~yGll~a~~gvGai~Gal~~~~----l~~~-------~~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  242 PLFAR------DVLG-GGASGYGLLLAAFGVGAILGALLLPR----LRRR-------LSSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             hHHHH------HHhC-CcHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-------cCcchhhHHHHHHHHHHHHHHhc
Confidence            11111      1111 00011223333334444444433322    2222       34445667777777777776665


Q ss_pred             HHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008355          429 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLV  508 (568)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~  508 (568)
                      ..                    +.+...+.+++.|++.....+..++.+.+..|+++||++.+++++....+..+|+.+.
T Consensus       304 ~~--------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  304 SP--------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             ch--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            44                    5566677788889999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhh
Q 008355          509 TIVTKVT  515 (568)
Q Consensus       509 ~~i~~~~  515 (568)
                      |.+.+..
T Consensus       364 G~la~~~  370 (524)
T PF05977_consen  364 GFLADHF  370 (524)
T ss_pred             HHHHHHh
Confidence            9987654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.87  E-value=4.3e-20  Score=193.00  Aligned_cols=180  Identities=13%  Similarity=-0.012  Sum_probs=132.5

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHH-HhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQK-QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      +|+++...+ .+...+....+...+...+.+ ++|+|..+.++..+++.+.+.+++++.|++.||+ |.|+++.++.++.
T Consensus        33 ~r~l~~s~~-~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~  110 (462)
T PRK15034         33 RRNLWISVS-CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            355554444 444455555555555666654 7999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      ++.++.++++...              ..++++.+++.|++.|++ |...++....+++++|+++      ||+++|++.
T Consensus       111 ~i~~~~~~~a~~~--------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~  169 (462)
T PRK15034        111 IIPCVWLGIAVQN--------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGING  169 (462)
T ss_pred             HHHHHHHHHHHcc--------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHH
Confidence            9988888865110              114688899999999998 7788899999999999998      999999986


Q ss_pred             HHHHHhHHHhhhhhhhe-----ec-------------cccchhhhhHHHHHHHHHHHHHHhc
Q 008355          187 LSINIGALVASSVLVWI-----QM-------------NVGWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i-----~~-------------~~g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      ...|+|..+++.+...+     ..             ..+|+.++++..+..+++.++.++.
T Consensus       170 g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        170 GLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666666555544322     12             2346666666555554454444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=3.9e-20  Score=193.86  Aligned_cols=390  Identities=8%  Similarity=-0.020  Sum_probs=231.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |.+|.+....++...++....++++.|+++++|++..+.|++.+.+.+...+++++.|+++||+ |||+.+..+.+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4567777888888999999999999999999999999999999999999999999999999999 999999887766555


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +..........+..           .......+++.+++.|++.+...+....+..|..+  +      ++..++.....
T Consensus        81 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~  141 (396)
T TIGR00882        81 LFAPFFIYVFGPLL-----------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMF  141 (396)
T ss_pred             HHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhh
Confidence            44332211000100           00123345667888888888888887776655422  2      44567777788


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchh
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSL  268 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (568)
                      .++|..++|.+++.+.+ .+|+.+|++.+...++..++.+...++.    ++++...+            .  .      
T Consensus       142 ~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------~--~------  196 (396)
T TIGR00882       142 GCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVAN------------A--L------  196 (396)
T ss_pred             cccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhhc------------c--c------
Confidence            89999999999987755 6999999988766655544443332211    11000000            0  0      


Q ss_pred             hhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhh-ccc
Q 008355          269 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVY-SQM  347 (568)
Q Consensus       269 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  347 (568)
                         ++             +.++.+..+..                     +-.++ |.+.............+... .+.
T Consensus       197 ---~~-------------~~~~~~~~~~~---------------------~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~  238 (396)
T TIGR00882       197 ---GA-------------NASAFSLKLAL---------------------ELFRQ-RKFWMFVLYVVGVACVYDVFDQQF  238 (396)
T ss_pred             ---cc-------------ccCCCCHHHHH---------------------HHHcC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence               00             00000000000                     00011 11111111111111111111 222


Q ss_pred             cceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008355          348 STMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAG  427 (568)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  427 (568)
                      +.++.....  ....+  . ...+.......+...+.....++    +.||.+       +++.+.++.++.++++....
T Consensus       239 ~~y~~~~~~--~~~~~--~-~~~g~~~~~~~i~~~~~~~~~g~----l~~r~g-------~~~~l~~~~~l~~l~~~~~~  302 (396)
T TIGR00882       239 ANFFTSFFA--TPQQG--T-RVFGYVTTMGELLNALIMFCAPL----IINRIG-------AKNALLIAGTIMSVRIIGSS  302 (396)
T ss_pred             HHHHHHhcc--ccccc--h-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-------cchhHHHHHHHHHHHHHHHH
Confidence            222211100  00000  0 00112222222333333333333    455533       33456777777777665544


Q ss_pred             HHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHH-HHHHHHHHHHHHHH
Q 008355          428 ILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL-SLTTVAVGNYLSTL  506 (568)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~lg~~  506 (568)
                      ...                    +.++++...++.+++..........+..+..|++.++++.+. ++....+|+.+++.
T Consensus       303 ~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~  362 (396)
T TIGR00882       303 FAT--------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLST  362 (396)
T ss_pred             hcC--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHH
Confidence            322                    445555566777777766666677788888999999988776 67889999999999


Q ss_pred             HHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 008355          507 LVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLW  553 (568)
Q Consensus       507 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~  553 (568)
                      +.|.+.+..                ++...|.+.+++.++...+..+
T Consensus       363 l~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       363 LAGNMYDSI----------------GFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             hHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHHH
Confidence            999987643                2345777878887777665543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=7.7e-20  Score=194.12  Aligned_cols=357  Identities=12%  Similarity=0.094  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc---cCchH-HHHHHHHHHHHHHHH
Q 008355           37 NECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRFW-TIASFSIIYCLGMTL  112 (568)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~---~Grk~-~~~~~~~~~~i~~~~  112 (568)
                      ..+..+..+..+..+++.|+.+++|++..++|++.++..+...+..|+.|+++||.   +|||| .++.+.+..+++.++
T Consensus         7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~   86 (437)
T TIGR00792         7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL   86 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence            45666777777888999999999999999999999999999999999999999983   27744 677777778877777


Q ss_pred             HHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCC-CCCchhhhhhhhhhhhHHHHHHH
Q 008355          113 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFD-ETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      +....+.+             .......+++.+++.+++.+...+...++.+|..+ +++      |++..++.+...++
T Consensus        87 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~~~  147 (437)
T TIGR00792        87 LFTTPDFS-------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGATL  147 (437)
T ss_pred             HHhCCCCC-------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHHHH
Confidence            76542111             01234566777788888888888888888899875 445      99999998888888


Q ss_pred             hHHHhhhhhhhee-------ccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCC
Q 008355          192 GALVASSVLVWIQ-------MNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA  264 (568)
Q Consensus       192 g~~~~p~~~~~i~-------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (568)
                      |..+++.+.+.+.       +..+|++.+.+.++..++..+......++.+++.+++++                     
T Consensus       148 g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~---------------------  206 (437)
T TIGR00792       148 GGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE---------------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc---------------------
Confidence            8877766654443       246899988877766555554443333321100000000                     


Q ss_pred             cchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhh
Q 008355          265 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVY  344 (568)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (568)
                                              ++.+..+.                +    + .....|.+...+....+....+...
T Consensus       207 ------------------------~~~~~~~~----------------~----~-~l~~~~~~~~~~~~~~~~~~~~~~~  241 (437)
T TIGR00792       207 ------------------------KKLSLKQI----------------F----K-ALFKNDQLLILCLAYLFYNLAFNIK  241 (437)
T ss_pred             ------------------------cCCCHHHH----------------H----H-HHhCCHHHHHHHHHHHHHHHHHHHH
Confidence                                    00000000                0    0 0000111111111111111112222


Q ss_pred             ccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 008355          345 SQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV  424 (568)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~  424 (568)
                      .....++..+... +.       ...+.+.....+..++..++..+    +.+|       .++++.+..+.++.+++.+
T Consensus       242 ~~~~~~~~~~~~~-~~-------~~~~~~~~~~~i~~ii~~~~~~~----l~~r-------~g~~~~~~~~~~~~~~~~~  302 (437)
T TIGR00792       242 NGVQVYYFTYVLG-DP-------ELFSYMGSIAIVAGLIGVLLFPR----LVKK-------FGRKILFAGGILLMVLGYL  302 (437)
T ss_pred             cchhheeEeeecC-Ch-------HHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hCcHHHHHHHHHHHHHHHH
Confidence            2222333322111 00       00112222233444444444444    4555       3344566777777777766


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCC-------hhhHHHHHHHHHHHH
Q 008355          425 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-------DAMRSLCSALSLTTV  497 (568)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~  497 (568)
                      ......                   .+.+..+...++.+++.+...+..+++..|..|       ++.+|.+.|++++..
T Consensus       303 ~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  363 (437)
T TIGR00792       303 IFFFAG-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVR  363 (437)
T ss_pred             HHHHcc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHH
Confidence            554321                   133445556677888888888888999888865       567899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhc
Q 008355          498 AVGNYLSTLLVTIVTKVTT  516 (568)
Q Consensus       498 ~lg~~lg~~l~~~i~~~~~  516 (568)
                      .+|..+++.+.+.+.+..+
T Consensus       364 ~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       364 KLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            9999999999999887654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=1.3e-19  Score=189.73  Aligned_cols=170  Identities=12%  Similarity=0.087  Sum_probs=144.7

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      +...++..+....+.+...+.+|. +.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.+...++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence            344555666666666666666665 5567999999999999999999999999999999999 99999999999999988


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHH
Q 008355          111 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN  190 (568)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (568)
                      .++..+                   ++.+.+++.|+++|++.+...+...+++.|.+|+++      |+++.++.+...+
T Consensus        83 ~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~  137 (392)
T PRK10473         83 LLCSLA-------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITC  137 (392)
T ss_pred             HHHHHh-------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHH
Confidence            888776                   457778899999999999989999999999999988      9999999999999


Q ss_pred             HhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          191 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       191 ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      +|..++|.+++.+.+..||++.|++.++..++..++.
T Consensus       138 i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        138 IIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888899999988776655554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.87  E-value=9.7e-20  Score=189.93  Aligned_cols=342  Identities=11%  Similarity=0.047  Sum_probs=207.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCch----HHHHHHHHHHHHH
Q 008355           34 ILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRF----WTIASFSIIYCLG  109 (568)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk----~~~~~~~~~~~i~  109 (568)
                      .....++..+++..+.+++|.|++ ++|.|..++|++.+++.+...++.++.|.++||+ ||+    +.+.++.....  
T Consensus         9 ~~~~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--   84 (382)
T PRK11128          9 LALSYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--   84 (382)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--
Confidence            334456666677778889999995 5899999999999999999999999999999999 984    33322221111  


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      .......                   ++.+.+++.|++.|++.+...|...++..++  .++      |+++++..+...
T Consensus        85 ~~~~~~~-------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~  137 (382)
T PRK11128         85 VAFWFGA-------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWG  137 (382)
T ss_pred             HHHHHhc-------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHH
Confidence            1111111                   4578888999999999999999888877776  334      788888888899


Q ss_pred             HHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhh
Q 008355          190 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL  269 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (568)
                      ++|..+||.+++++.+.+|||..|++.++..++..+... ..++.   +|++++.++                .      
T Consensus       138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~----------------~------  191 (382)
T PRK11128        138 SIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQQ----------------E------  191 (382)
T ss_pred             HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCccccccc----------------c------
Confidence            999999999999999999999999877754444433322 22211   111000000                0      


Q ss_pred             hhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHH-HHHhhhHHHhhhcccc
Q 008355          270 YETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP-VWASGIVFATVYSQMS  348 (568)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  348 (568)
                                       ....                    ..++     +..+.++.+.... .++........+...+
T Consensus       192 -----------------~~~~--------------------~~~~-----~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~  229 (382)
T PRK11128        192 -----------------SAGW--------------------PAWK-----ALLKEPTVWRFLLCVSLLQGSHAAYYGFSA  229 (382)
T ss_pred             -----------------cccc--------------------chHH-----HHHcChhHHHHHHHHHHHHHHhHhHHHHHH
Confidence                             0000                    0000     0011112211111 1111111111111111


Q ss_pred             ceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008355          349 TMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI  428 (568)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  428 (568)
                      .+. .+       .+ ......+.+.....+..++...+.+    +..||       .++++.+..++++.+++++....
T Consensus       230 ~~~-~~-------~g-~s~~~~g~~~~~~~~~~~~~~~~~g----~l~~r-------~~~~~~l~~~~~~~~~~~~~~~~  289 (382)
T PRK11128        230 IYW-QA-------AG-YSASTIGYLWSLGVVAEVLIFAFSN----RLFRR-------WSARDLLLLSAICGVVRWGLMGS  289 (382)
T ss_pred             HHH-HH-------CC-CCHhHHHHHHHHHHHHHHHHHHHHH----HHHHH-------CCHHHHHHHHHHHHHHHHHHHHh
Confidence            111 11       11 0000112222222222222223322    34444       45556677787777777665543


Q ss_pred             HHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHH-HHHHHHHHHHHHH
Q 008355          429 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL-TTVAVGNYLSTLL  507 (568)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~l  507 (568)
                      .+                    +.+.+++..++.+++.+...+....+..+. |++.+++++++.+ ....+|..+|+.+
T Consensus       290 ~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i  348 (382)
T PRK11128        290 TT--------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL  348 (382)
T ss_pred             hh--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33                    555666677888999998899999998887 4555789999887 5567888999999


Q ss_pred             HHHhhhhh
Q 008355          508 VTIVTKVT  515 (568)
Q Consensus       508 ~~~i~~~~  515 (568)
                      .|.+.+..
T Consensus       349 ~G~l~~~~  356 (382)
T PRK11128        349 SGFLYQHL  356 (382)
T ss_pred             HHHHHHhc
Confidence            99887643

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=5.4e-21  Score=201.01  Aligned_cols=377  Identities=14%  Similarity=0.161  Sum_probs=244.4

Q ss_pred             HhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchh
Q 008355           59 QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQT  138 (568)
Q Consensus        59 ~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (568)
                      +++++..+-+++.+++..++.++++++|+++||+ |.|+++..+.++.++++++.++++..                 +.
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~-----------------~~  128 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI-----------------GF  128 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh-----------------cc
Confidence            5788899999999999999999999999999999 99999999999999999999988552                 34


Q ss_pred             HHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc-ccchhhhhHHH
Q 008355          139 AVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN-VGWGWGFGIPA  217 (568)
Q Consensus       139 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~-~g~~~~f~~~~  217 (568)
                      +.+++.|+++|++.|...|+...+.+++.|++|      |++..++.+.+..+|.+++-.++|++.++ +||+++|++.+
T Consensus       129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g  202 (466)
T KOG2532|consen  129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG  202 (466)
T ss_pred             hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence            478999999999999999999999999999999      99999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhh
Q 008355          218 VAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKA  297 (568)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~  297 (568)
                      ...++..++++....+    .|++++.                 +.+.+....+.+..++..+                 
T Consensus       203 ~~g~i~~~~w~~~~~d----~P~~h~~-----------------is~~El~~I~~~k~~~~~~-----------------  244 (466)
T KOG2532|consen  203 IVGLIWFILWFLFYSD----SPSKHPN-----------------ISEKELKYIEKGKSEAHVK-----------------  244 (466)
T ss_pred             HHHHHHHHHHHHHhcC----CcccCCC-----------------CCHHHHHHHHhcccccccC-----------------
Confidence            7776666655544432    2221110                 0000000011100000000                 


Q ss_pred             hhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCchhhcccc
Q 008355          298 AVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFD  377 (568)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (568)
                               ++...||+...+.    ...+...+..+.-...++...++.++++.. ...++..       ..+.+++++
T Consensus       245 ---------~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~v~-------~~G~~salP  303 (466)
T KOG2532|consen  245 ---------KKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFDVR-------ETGFLSALP  303 (466)
T ss_pred             ---------CCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCChh-------hhhHHHHHH
Confidence                     0023466422211    111111222233334444455555555432 2222221       355667777


Q ss_pred             chhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhH
Q 008355          378 TLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRM--GIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQ  455 (568)
Q Consensus       378 ~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~--~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (568)
                      .+...+...+.+.+.|++.+| ...   .+..+++  .++....++++++++.....                  +. +.
T Consensus       304 ~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~~------------------~~-~~  360 (466)
T KOG2532|consen  304 FLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSDE------------------HR-LL  360 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCCC------------------cc-hH
Confidence            777777777777755555544 211   2233344  44444455555555443310                  11 22


Q ss_pred             HHHHHHHHHHHHHHhhhhHHhhhcc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhH
Q 008355          456 VPQYFIVGCAEVFTFIGQLEFFYDQ-APDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLD  534 (568)
Q Consensus       456 i~~~~l~g~~~~~~~~~~~~~~~~~-~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~  534 (568)
                      ...++..+.+..........-.... + +++-+..+|+.+....+.+.++|.+++.+.. ..  ...+|          +
T Consensus       361 a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW----------~  426 (466)
T KOG2532|consen  361 AVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW----------R  426 (466)
T ss_pred             HHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH----------H
Confidence            2222333333333333333333333 5 5668999999999999999999999998763 11  22245          6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 008355          535 YFYWLLTILSVLNFLVYLWIA  555 (568)
Q Consensus       535 ~~f~~~a~~~~v~~v~~~~~~  555 (568)
                      .+|++.+++.+++.+++.++.
T Consensus       427 ~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  427 IVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHhchheeEee
Confidence            789999999999988777764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.86  E-value=5.5e-20  Score=217.96  Aligned_cols=136  Identities=10%  Similarity=0.021  Sum_probs=109.1

Q ss_pred             hhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHH---HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHH
Q 008355           65 VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI---IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVT  141 (568)
Q Consensus        65 ~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (568)
                      ...+++.+++.+...++.+++|+++||+ |||+++.....   +.++..++....                   .+++.+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-------------------~s~~~l  111 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-------------------NSVPLL  111 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhHHHH
Confidence            3467888889999999999999999999 99997643222   222222222222                   358889


Q ss_pred             HHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHH
Q 008355          142 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMA  221 (568)
Q Consensus       142 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~  221 (568)
                      ++.|+++|++.+...|+..+++.+++|+++      |++++++.+++.++|.++||.++|++....+|++.|+..++..+
T Consensus       112 ~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~  185 (1140)
T PRK06814        112 FAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAV  185 (1140)
T ss_pred             HHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999988      99999999999999999999999999999999999855444444


Q ss_pred             HHHHH
Q 008355          222 IAVVF  226 (568)
Q Consensus       222 ~~~~~  226 (568)
                      +++++
T Consensus       186 ~~~~~  190 (1140)
T PRK06814        186 LGWLA  190 (1140)
T ss_pred             HHHHH
Confidence            44433

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=2e-19  Score=190.59  Aligned_cols=152  Identities=17%  Similarity=0.099  Sum_probs=122.6

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      ...+..+.+..+...+........+| .+++++|.|..+.|+..+.+.++..++.++.|+++||+ |||+++..+.++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~  102 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            33445555555555555544444455 46899999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+++.....  .              ++.+.++++|+++|+|.|...++..+++.|..|+++      |.+.+++.+.
T Consensus       103 ~~~~l~~~~~~--a--------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~  160 (438)
T PRK10133        103 LGAALFWPAAE--I--------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQT  160 (438)
T ss_pred             HHHHHHHHHHh--c--------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHH
Confidence            99987642210  0              468889999999999999999999999998766655      6667888888


Q ss_pred             HHHHhHHHhhhhhhhe
Q 008355          188 SINIGALVASSVLVWI  203 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i  203 (568)
                      ...+|..+||.+++.+
T Consensus       161 ~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        161 FNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9899999999887654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.86  E-value=1.3e-19  Score=215.33  Aligned_cols=156  Identities=11%  Similarity=0.068  Sum_probs=126.6

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN--VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~--~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      .+....+++..++.++...+....+..++.+.++.+.  ...+++.+++.+...++.+++|+++||+ |||++++++.++
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            3445566666777666666666666667766666654  3468889999999999999999999999 999999988876


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++.++..+....                .+++.+++.|+++|++.+...++..++++|++|+++      |+++++++
T Consensus        87 ~~~~~~~~~~~~~~----------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~  144 (1146)
T PRK08633         87 EVGLTLLIVLAYYL----------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLL  144 (1146)
T ss_pred             HHHHHHHHHHHHHH----------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHH
Confidence            66665554433111                347889999999999999999999999999999988      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheecc
Q 008355          186 YLSINIGALVASSVLVWIQMN  206 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~  206 (568)
                      ..+.++|.++||.+++++.+.
T Consensus       145 ~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        145 EAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988765

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.86  E-value=1.7e-21  Score=202.23  Aligned_cols=366  Identities=39%  Similarity=0.638  Sum_probs=229.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhh
Q 008355           96 FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGER  175 (568)
Q Consensus        96 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  175 (568)
                      .|+++++.+++.+|.+++.+++..+..          +.+.+...++++..+.++|.|++.|+..++++|+++++++   
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---   67 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---   67 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---
Confidence            378899999999999998887553331          1234567899999999999999999999999999998742   


Q ss_pred             hhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeec-CCCCChhHHHH-HHHHH
Q 008355          176 EKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ-KPGGSPLTRIM-QVIVA  253 (568)
Q Consensus       176 ~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~  253 (568)
                      .+|.++++++|++.|+|+.+++.+.+++.+++||.+.|+++++..+++++.++..++.++++ ++.+.+..+.. .+...
T Consensus        68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~  147 (372)
T PF00854_consen   68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVA  147 (372)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHH
Confidence            23999999999999999999999999999999999999999999999999988888887776 66666666633 33344


Q ss_pred             HHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHH
Q 008355          254 SFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV  333 (568)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (568)
                      ..+++....|....++.+...... +.   .....  ...............   ..+.+  ++.++++..+.+.+.++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~--~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~k~~~~~~~~  216 (372)
T PF00854_consen  148 AFKKRKLAVPKGSSWLDWALFQYS-ER---SIFGI--IVFIRAAVIFFPEIF---FWALF--CQVQRVEELKALIRFLPI  216 (372)
T ss_dssp             HHHHHCCCH-HHHHHHHHHHHHHC-CC---CCCCC--CCHHHHHHHHCCCHH---HHTTT--SSTTTHHHCCHHHCHHHC
T ss_pred             HHHHhhcccccchHHHHHhhhhhh-hh---hhhhh--hhhccchhhhhhhhh---hcccC--Cccceeeeeeeeeecccc
Confidence            444444444332222222211110 00   00000  000000000000000   00000  122334445555556666


Q ss_pred             HHhhhHHHhhhccccceeEeecccccCCCCCC-cccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHH
Q 008355          334 WASGIVFATVYSQMSTMFVLQGNTMDQHMGPN-FKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRM  412 (568)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~  412 (568)
                      +.+...+...+.+.......+...++.... + +.+|+++++.++.+.++++.|+.+++++|+.++ ++.   .+...++
T Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~  291 (372)
T PF00854_consen  217 FLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKF  291 (372)
T ss_dssp             CCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHH
T ss_pred             CeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhh
Confidence            666667777777777766667666666666 6 889999999999999999999999999998882 222   7888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHH
Q 008355          413 GIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL  492 (568)
Q Consensus       413 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~  492 (568)
                      .+|++++.+++++.+.++..+......       ....+.+|.++.+++..++|.+..+...+..+|.+|++..+..+|+
T Consensus       292 ~~G~~~~~~~~~~~~~v~~~r~~~~~~-------~~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~  364 (372)
T PF00854_consen  292 GIGMVFAILAMFVAAIVEIRRLCYAQP-------CGKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGI  364 (372)
T ss_dssp             HHH-HHHHHHHHTTTHHHH---HH-----------TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhcccc-------cCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHH
Confidence            999999999999888777533221111       1122336777999999999999999988877777777777666666


Q ss_pred             HHHHH
Q 008355          493 SLTTV  497 (568)
Q Consensus       493 ~~~~~  497 (568)
                      ++...
T Consensus       365 ~~~~~  369 (372)
T PF00854_consen  365 WFALS  369 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=2.8e-20  Score=192.45  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=135.8

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      +.+...+..+......+...+.+|.++++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            456677777777778888888888789999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      .++++++                   . +.+.+++.|+++|++.+. .+...++++|++|+++      |+++.+++...
T Consensus        81 ~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~~~~~  134 (366)
T TIGR00886        81 CLWAGLA-------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGLAAGW  134 (366)
T ss_pred             HHHHHHH-------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHHHHHH
Confidence            9888877                   4 578899999999999665 4567889999999988      99999999877


Q ss_pred             HHHhHHHhhhhhhheec----------cccchhhhhH
Q 008355          189 INIGALVASSVLVWIQM----------NVGWGWGFGI  215 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~----------~~g~~~~f~~  215 (568)
                      .++|..+++.+++.+..          ..+||+.|++
T Consensus       135 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       135 GNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            78888777777665543          3489999943

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.85  E-value=1.8e-24  Score=230.69  Aligned_cols=396  Identities=15%  Similarity=0.132  Sum_probs=241.2

Q ss_pred             hhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHH
Q 008355           66 TASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL  145 (568)
Q Consensus        66 ~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (568)
                      ..++..+...++..++.+++|+++||+ |||++++++.++..++.++.+++...                .+.+.+.++|
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~R  109 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY----------------NNFWMLLIGR  109 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc----------------cccccccccc
Confidence            467889999999999999999999999 99999999999999999999888210                1678899999


Q ss_pred             HHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc---ccchhhhhHHHHHHHH
Q 008355          146 YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN---VGWGWGFGIPAVAMAI  222 (568)
Q Consensus       146 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~---~g~~~~f~~~~~~~~~  222 (568)
                      ++.|++.|+..+..+.++.|..|++.      |++..++.+....+|..++..++-.+...   .+||..+++.++..++
T Consensus       110 ~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~  183 (451)
T PF00083_consen  110 FLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL  183 (451)
T ss_pred             cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999998      99999999999999999988766544333   3599998887766544


Q ss_pred             HHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhcc
Q 008355          223 AVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQ  302 (568)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  302 (568)
                      .++..                                ..+||+|+|+..++++|++++..+++...+.... +....+..
T Consensus       184 ~~~~~--------------------------------~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~  230 (451)
T PF00083_consen  184 VLLLR--------------------------------FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDE-EIEEIKAE  230 (451)
T ss_pred             ccccc--------------------------------cccccccceecccccccccccccccccccccccc-cccccccc
Confidence            33322                                1368899999999988888877766433211110 00000000


Q ss_pred             ccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHH-hhhccccceeEeecccccCCCCCCcccCchh-hccccchh
Q 008355          303 TDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFA-TVYSQMSTMFVLQGNTMDQHMGPNFKIPSAS-LSLFDTLS  380 (568)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  380 (568)
                      .++.+..+..|++..+++ +.+++++..+.+........ .....+.+.+...       .+    ..+.. .+....+.
T Consensus       231 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-------~~----~~~~~~~~~~~~~~  298 (451)
T PF00083_consen  231 KKESQESKASWRDLFRNK-KYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-------AG----ISNSFLATLILGLV  298 (451)
T ss_pred             cccccccceeeeeccccc-cccccccccccccccccccccccccccccccccc-------cc----cccccccccccccc
Confidence            000000112233222221 11223222222211111111 0111111111111       11    11111 11111111


Q ss_pred             hhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhccCcCCCCCceeehhhHHHHH
Q 008355          381 VIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI-LEVVRLNIVKRNNYYDIETIPMTIFWQVPQY  459 (568)
Q Consensus       381 ~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  459 (568)
                      .++...+...    +.+|.+||       +.+..+.++++++.+.++. ....          .++ +...+...+....
T Consensus       299 ~~~~~~~~~~----~~~~~GRr-------~~~i~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~i~~~~  356 (451)
T PF00083_consen  299 NFLGTLLAIF----LIDRFGRR-------KLLIIGLLLMAICSLILGIIFFLG----------VSS-SSWWSILSIVFLA  356 (451)
T ss_pred             cccccccccc----cccccccc-------cccccccccccccccccccccccc----------ccc-ccccccccceeee
Confidence            1111111112    44554433       3456677776666665541 1100          000 0001222222222


Q ss_pred             HHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHH
Q 008355          460 FIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWL  539 (568)
Q Consensus       460 ~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~  539 (568)
                      +..........+..+.+..|.+|.+.|+++.|+....+.+++.+++.+.+.+.+...                ....|++
T Consensus       357 l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~----------------~~~~~~i  420 (451)
T PF00083_consen  357 LFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG----------------GWGVFLI  420 (451)
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------ccccchh
Confidence            222233334567778999999999999999999999999999888888776543221                1135778


Q ss_pred             HHHHHHHHHHHHHHHhhhceecccccCC
Q 008355          540 LTILSVLNFLVYLWIAKWFTYKKATGRA  567 (568)
Q Consensus       540 ~a~~~~v~~v~~~~~~~~~~~~~~~~~~  567 (568)
                      .++++++..+..+++.||+|+++.||.+
T Consensus       421 ~~~~~~i~~i~~~~~lpET~g~~l~ei~  448 (451)
T PF00083_consen  421 FAGVCLIAIIFVYFFLPETKGKTLEEIQ  448 (451)
T ss_pred             hHHHHHHHHhheeEEEeeCCCCCHHHHH
Confidence            8888899988899999999999988754

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.84  E-value=3.8e-19  Score=185.20  Aligned_cols=156  Identities=15%  Similarity=0.152  Sum_probs=116.0

Q ss_pred             HHHHHHHHHhC--CChhhhhhhHHH-----HHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008355           51 NLVNYLQKQLN--QGNVTASNNVTN-----WSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLK  123 (568)
Q Consensus        51 ~l~~yl~~~lg--~s~~~~g~~~~~-----~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  123 (568)
                      +...++.++..  .++.+.+...+.     ..+...++.++.|+++||+ |||+++..+.++..++.++++++.+.+.. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI-   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence            45556665544  334445544432     2233346889999999999 99999999999999999888877321110 


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhe
Q 008355          124 PSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI  203 (568)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i  203 (568)
                                .......+++.|+++|++.+...+....+++|.+|+++      |++..++.+.+..+|..+++.++..+
T Consensus        92 ----------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883        92 ----------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             ----------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      00012358889999999999999999999999999988      99999999999999999999877654


Q ss_pred             e--------ccccchhhhhHHHHHHHHHH
Q 008355          204 Q--------MNVGWGWGFGIPAVAMAIAV  224 (568)
Q Consensus       204 ~--------~~~g~~~~f~~~~~~~~~~~  224 (568)
                      .        +.++||+.|++.++..+++.
T Consensus       156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       156 SYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            3        35789999988776555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.84  E-value=3.5e-18  Score=183.73  Aligned_cols=176  Identities=14%  Similarity=0.163  Sum_probs=137.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc----cCchHH-HHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY----MGRFWT-IASF  102 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~----~Grk~~-~~~~  102 (568)
                      +|..+.+++..+......+.....+|.|+++ .|.|..++|... ..... .++.++.|.++||+    +||||. +..+
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~   87 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT   87 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence            4445667777777777777777788888764 699998988862 22222 36899999999997    277775 6677


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhh
Q 008355          103 SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF  182 (568)
Q Consensus       103 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (568)
                      .+..+++...+++..  |.              .+.+.+.+.+++.+++.+...+...++..|++|+++      |+++.
T Consensus        88 ~i~~~~~~~~~a~~~--~~--------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~  145 (491)
T PRK11010         88 QLLLLVAIAAMGFLE--PG--------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGA  145 (491)
T ss_pred             HHHHHHHHHHHHHcC--Cc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHH
Confidence            777767766666541  21              457788888999999999999999999999999888      99999


Q ss_pred             hhHHHHHHHhHHHhhhhhhheec-cccchhhhhHHHHHHHHHHHHHH
Q 008355          183 NWFYLSINIGALVASSVLVWIQM-NVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       183 ~~~~~~~~ig~~~~p~~~~~i~~-~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      ++...+.++|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus       146 ~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        146 AISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888 57999999998876655544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.84  E-value=6.9e-19  Score=175.88  Aligned_cols=391  Identities=12%  Similarity=0.020  Sum_probs=254.4

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      .+.|+++.- ...+...+..+.+...+.+++.+++|+|..|.+++.....+...+.+++-|.+.||+ |.|++..++.++
T Consensus        11 ~~~~~L~~S-~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l   88 (417)
T COG2223          11 IARRNLWLS-TLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLL   88 (417)
T ss_pred             chhHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHH
Confidence            345554443 445555666667778888899999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      ..+-++..+++.+.|+                .+.+++.+++.|++.| ..++..++++++||+++      +|.+.|++
T Consensus        89 ~~IP~~~~~~a~~~~~----------------~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~------qG~AlGI~  145 (417)
T COG2223          89 LLIPCLGLAFAVTYPS----------------TWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK------QGLALGIA  145 (417)
T ss_pred             HHHHHHHHHHHccCCc----------------hHHHHHHHHHHhcccc-eehcccccccccCChhh------hhHHHHHh
Confidence            9999998888854433                4789999999999865 45678899999999999      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheecccc---chhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhccccc
Q 008355          186 YLSINIGALVASSVLVWIQMNVG---WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVV  262 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (568)
                      . ..|+|..+...++..+....|   |+....+..+..++..++.++..+......+..++..+                
T Consensus       146 g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~----------------  208 (417)
T COG2223         146 G-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP----------------  208 (417)
T ss_pred             c-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch----------------
Confidence            9 889999999998888888888   89888877777777666555543322111111110000                


Q ss_pred             CCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHH-HHHHHHHHHHHHHhhhHHH
Q 008355          263 PADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVE-ELKAIIRLLPVWASGIVFA  341 (568)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  341 (568)
                                                                           .+.+.+. +.+.+...+........|-
T Consensus       209 -----------------------------------------------------~~~~~v~~~~~~W~lsllY~~tFG~Fv  235 (417)
T COG2223         209 -----------------------------------------------------AQLKAVFSNKDTWLLSLLYFATFGGFV  235 (417)
T ss_pred             -----------------------------------------------------hHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence                                                                 0000011 1222222233333333333


Q ss_pred             hhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 008355          342 TVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIF  421 (568)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~  421 (568)
                      ....+.+.++..+......        ..+.......+...+.-|+.++    +.||       .+..+.....+..+++
T Consensus       236 gfs~~l~~~~~~~fg~~~~--------~Ag~~a~~f~~~g~l~Rp~GG~----LsDR-------~Gg~rv~~~~f~~~~~  296 (417)
T COG2223         236 GFSAYLPMYLVTQFGLSPV--------TAGLIAFLFPLIGALARPLGGW----LSDR-------IGGRRVTLAVFVGMAL  296 (417)
T ss_pred             HHHHHHHHHHHHhcCCChh--------hHHHHHHHHHHHHHHHHhccch----hhhh-------ccchhHHHHHHHHHHH
Confidence            3333333333322211111        1223334344444555555555    3444       4444577777777777


Q ss_pred             HHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHH
Q 008355          422 SMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGN  501 (568)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~  501 (568)
                      +..+.......           +  ....+....+..++..++..++.+-..+-.+..+.|+ +-|.+.|+....+.+|+
T Consensus       297 ~~~~l~~~~~~-----------~--~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGG  362 (417)
T COG2223         297 AAALLSLFLTG-----------F--GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGG  362 (417)
T ss_pred             HHHHHHccccc-----------c--ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccc
Confidence            77766644311           0  0012333333333444444444444555566666644 67888888888889998


Q ss_pred             HHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhce
Q 008355          502 YLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT  559 (568)
Q Consensus       502 ~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~  559 (568)
                      ..-|...+...+.++               .+...|+++..+.+++.++.+..+.+.+
T Consensus       363 f~lp~~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         363 FFLPLAFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             cchhHHHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888888877766542               3456789999999999988888777653

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.83  E-value=1.3e-17  Score=175.21  Aligned_cols=167  Identities=16%  Similarity=0.128  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhcc----CchH-HHHHHHHHHHHH
Q 008355           35 LGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYM----GRFW-TIASFSIIYCLG  109 (568)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~----Grk~-~~~~~~~~~~i~  109 (568)
                      +...+.....+.....-+|.|+++ .|+|..++|++......  .+..++.|+++||+.    |||| .+..+.+..+++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            344555666666677788999985 69999999999766665  689999999999982    5654 788878888777


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      ...+++..  +              ..+.+.+++..++.++..+...++..+++.|++|+++      |+++.++...+.
T Consensus        82 ~~~l~~~~--~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~  139 (402)
T PRK11902         82 IAAMAFCP--P--------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGY  139 (402)
T ss_pred             HHHHHhcC--c--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHH
Confidence            77766651  1              1346667777777788888899999999999999988      999999999999


Q ss_pred             HHhHHHhhhhhhheecc-ccchhhhhHHHHHHHHHHHH
Q 008355          190 NIGALVASSVLVWIQMN-VGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~-~g~~~~f~~~~~~~~~~~~~  226 (568)
                      ++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus       140 ~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        140 RLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999888875 59999999877765554443

>TIGR00896 CynX cyanate transporter

Probab=99.82  E-value=8.9e-19  Score=180.77  Aligned_cols=145  Identities=16%  Similarity=0.154  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 008355           48 MSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCD  127 (568)
Q Consensus        48 ~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  127 (568)
                      ..+.+| .+++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+...++.+.+ ..           
T Consensus        19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-----------   84 (355)
T TIGR00896        19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-----------   84 (355)
T ss_pred             CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence            334444 56778999999999999999999999999999999999 99999999988877777665 33           


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccc
Q 008355          128 KDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV  207 (568)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~  207 (568)
                              ++.+.+++.|++.|++.+...+..+.++.|.+| ++      |++++++++.+.++|..+++.+++.+.+..
T Consensus        85 --------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  149 (355)
T TIGR00896        85 --------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHS  149 (355)
T ss_pred             --------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    346778899999999999888888888888886 46      999999999999999999999988887664


Q ss_pred             --cchhhhhHHHHHHH
Q 008355          208 --GWGWGFGIPAVAMA  221 (568)
Q Consensus       208 --g~~~~f~~~~~~~~  221 (568)
                        +||+.|.+.++..+
T Consensus       150 ~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       150 GGHWQQALAWWALPAL  165 (355)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence              38988876655433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.81  E-value=1.3e-17  Score=175.23  Aligned_cols=171  Identities=13%  Similarity=0.126  Sum_probs=137.4

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT  111 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~  111 (568)
                      +.+....+...+.+ .+...+.+.+++++|+|..+.|++.+.+.++..++.++.|++.||+ |||+++..+.++++++.+
T Consensus         6 ~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         6 ALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            34444444444444 3444444567889999999999999999999999999999999999 999999999999999988


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      ++..+...                .+++.+++.|++.|+|.|...+...+++.+..|+++      |++..++.+...++
T Consensus        84 l~~~~~~~----------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l  141 (410)
T TIGR00885        84 LFWPAAEI----------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPF  141 (410)
T ss_pred             HHHHHHhh----------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHH
Confidence            76544211                357889999999999999999999999999998887      89999999999999


Q ss_pred             hHHHhhhhhhheec--------------------------cccchhhhhHHHHHHHHHHHH
Q 008355          192 GALVASSVLVWIQM--------------------------NVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       192 g~~~~p~~~~~i~~--------------------------~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      |..++|.+++.+..                          ..+||++|++.++..++..++
T Consensus       142 G~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       142 GSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998876632                          236999998877655544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.80  E-value=3.6e-18  Score=167.35  Aligned_cols=132  Identities=15%  Similarity=0.154  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHhCC----ChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008355           47 GMSTNLVNYLQKQLNQ----GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL  122 (568)
Q Consensus        47 ~~~~~l~~yl~~~lg~----s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~  122 (568)
                      .+..++...++...+.    +..-.|.+-+.|++.+.+.++..|.++||+ |||+++.+|.+..++...+.+.+      
T Consensus        46 ~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S------  118 (451)
T KOG2615|consen   46 PFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS------  118 (451)
T ss_pred             HHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH------
Confidence            3344444444443333    345578999999999999999999999999 99999999999999988888887      


Q ss_pred             CCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhh
Q 008355          123 KPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVW  202 (568)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~  202 (568)
                                   .|+..+.+.|++.|+..|-. ....++++|.+++++      |+.+++....+..+|.++||.++|+
T Consensus       119 -------------~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgy  178 (451)
T KOG2615|consen  119 -------------RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGY  178 (451)
T ss_pred             -------------HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhH
Confidence                         56767777899999998865 467899999999988      9999999999999999999999999


Q ss_pred             eec
Q 008355          203 IQM  205 (568)
Q Consensus       203 i~~  205 (568)
                      +.+
T Consensus       179 la~  181 (451)
T KOG2615|consen  179 LAQ  181 (451)
T ss_pred             HHh
Confidence            987

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.80  E-value=3.4e-17  Score=172.44  Aligned_cols=442  Identities=12%  Similarity=0.039  Sum_probs=250.5

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhh----ccCchHHHHHH-HHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS----YMGRFWTIASF-SII  105 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr----~~Grk~~~~~~-~~~  105 (568)
                      ++.+....+..++++-...+++++|++ ++|.+....+++..+..+...+.+|+.|+++||    + ||||.++.+ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence            566777788888998888888888875 699999999999999999999999999999995    8 999998875 555


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCC--chhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTG--AQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      .+++..+++.+.++...    ..+..++..  ...+..+++..+..++.....+...++++|.+|+++++    ++.+.+
T Consensus        84 ~~~~l~ll~~~~~~~~~----~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~  155 (477)
T TIGR01301        84 VAFAVILIGFAADIGHL----FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANA  155 (477)
T ss_pred             HHHHHHHHHhCchhhhh----ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHH
Confidence            55666666665332110    000000000  01133444555566788888888899999999988621    367999


Q ss_pred             hHHHHHHHhHHHhhhhhhhe--ecc-------------ccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHH
Q 008355          184 WFYLSINIGALVASSVLVWI--QMN-------------VGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIM  248 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i--~~~-------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (568)
                      +.+...++|..+|+.++++.  .+.             .+.+..|++.++..++..++..+..+|.+..++++...+   
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---  232 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---  232 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---
Confidence            99999999999999988764  111             156788988887777666665544443221110000000   


Q ss_pred             HHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHH
Q 008355          249 QVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAII  328 (568)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (568)
                                          ..+.  .+          +.+..+                   .+++..+.-.+-.+.+.
T Consensus       233 --------------------~~~~--~~----------~~~~~~-------------------~~~~i~~~~~~mP~~m~  261 (477)
T TIGR01301       233 --------------------EAAP--PS----------KHGEEA-------------------FFGELFGAFKYLPRPVW  261 (477)
T ss_pred             --------------------hccc--cc----------ccchhh-------------------hHHHHHHHHHHCCHHHH
Confidence                                0000  00          000000                   00000000001112222


Q ss_pred             HHHHHHHhhhHHHhhhccccceeEeecc-cccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCC
Q 008355          329 RLLPVWASGIVFATVYSQMSTMFVLQGN-TMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFT  407 (568)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~  407 (568)
                      .+....++.-+.|..+..+.+.+.-+.. ..+....+.++... -+.........+...+.+.++.++.++.+++     
T Consensus       262 ~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gv-r~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~-----  335 (477)
T TIGR01301       262 ILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGV-RAGAFGLMLNSVVLGITSIGMEKLCRGWGAG-----  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence            3333333333333343333332221110 00000000000000 0011111111111123333344456664322     


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhccCcCCCCCceee-hhhHHHHHHHHHHHHHHHhhhhHHhhhccCCh-
Q 008355          408 QLQRMGIGLLISIFSMVAAGILEVVRLN--IVKRNNYYDIETIPMT-IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPD-  483 (568)
Q Consensus       408 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~-  483 (568)
                       +..-.++.++.++++....+++....+  +.+.++  .--..+.. .+.++..+.+.|+.-.......++++++..|+ 
T Consensus       336 -k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~  412 (477)
T TIGR01301       336 -KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDG--ESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL  412 (477)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccc--cccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence             122367777777777766655421000  000000  00001111 35566677888999999999999999999995 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhce
Q 008355          484 -AMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT  559 (568)
Q Consensus       484 -~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~  559 (568)
                       +..|..+|+.|+.-.+...+.++..|.+.+..+.+.              ..++.+-++.++++.+..++..|+.+
T Consensus       413 ~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~--------------~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       413 GAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGN--------------LPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------------eeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence             556999999999999999999988877544432111              23577778888888888888888754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.80  E-value=9e-18  Score=173.31  Aligned_cols=156  Identities=12%  Similarity=0.119  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc----cCchHHH-HHHHHHHHHHHHHHHHhhhccCCCC
Q 008355           50 TNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY----MGRFWTI-ASFSIIYCLGMTLLTLTASVSGLKP  124 (568)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~----~Grk~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  124 (568)
                      ....+.+.+++|+|..+.|+.... .+...+ .++.|.++||+    +||||.+ ..+.+..++....+++...  .   
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--~---   80 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--S---   80 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc--c---
Confidence            333344556789999999988654 333333 88999999997    3888874 5666666666656655411  1   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhee
Q 008355          125 SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ  204 (568)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~  204 (568)
                                 .+.+.++...++.+++.+...++..+++.|++|+++      |+++.++...+.++|..+++.+++.+.
T Consensus        81 -----------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        81 -----------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                       345566666777788888888999999999999888      999999999999999999999999888


Q ss_pred             cccc--------chhhhhHHHHHHHHHHHHHHh
Q 008355          205 MNVG--------WGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       205 ~~~g--------~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      ...|        ||..|++.++..+++.+..++
T Consensus       144 ~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       144 SPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             hhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            8888        999999888766665554443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.6e-18  Score=169.31  Aligned_cols=177  Identities=15%  Similarity=0.081  Sum_probs=154.1

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------------------------C
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQL-------------------------------------------------N   61 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-------------------------------------------------g   61 (568)
                      +..+....+.++..+-.+++.+|.|+.+.-                                                 +
T Consensus        23 lviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~  102 (464)
T KOG3764|consen   23 LVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLD  102 (464)
T ss_pred             EEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcc
Confidence            445556667777777777888888875433                                                 3


Q ss_pred             CChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHH
Q 008355           62 QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVT  141 (568)
Q Consensus        62 ~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (568)
                      -+++++|++.+++.+.+.+..++.|.+.||+ |+|-.+++|..++...++++++.                   .+.+++
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg-------------------~sy~~l  162 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG-------------------NSYPML  162 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc-------------------chhHHH
Confidence            4567899999999999999999999999999 99999999999999999999998                   447789


Q ss_pred             HHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHH
Q 008355          142 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMA  221 (568)
Q Consensus       142 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~  221 (568)
                      +++|.+||+|.+....+..++++|.||+++.     |++++|+.-.+..+|-.+||.++|.+.+..|++.+|++.++.++
T Consensus       163 ~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~L  237 (464)
T KOG3764|consen  163 FVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLL  237 (464)
T ss_pred             HHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHH
Confidence            9999999999999999999999999998863     99999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHhcCc
Q 008355          222 IAVVFFFSGSR  232 (568)
Q Consensus       222 ~~~~~~~~~~~  232 (568)
                      +-..+-+++.+
T Consensus       238 ld~~L~l~vi~  248 (464)
T KOG3764|consen  238 LDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHheeC
Confidence            77666555443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=2.7e-17  Score=178.74  Aligned_cols=383  Identities=13%  Similarity=0.084  Sum_probs=229.5

Q ss_pred             HHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCch
Q 008355           58 KQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQ  137 (568)
Q Consensus        58 ~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (568)
                      +..+.+.....+..+++.++..+++++.|.++||+ |||++++++.++.+++.+..+++                   .|
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a-------------------~~  170 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA-------------------PN  170 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh-------------------Cc
Confidence            45666778889999999999999999999999997 99999999999999999999988                   67


Q ss_pred             hHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHH
Q 008355          138 TAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPA  217 (568)
Q Consensus       138 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~  217 (568)
                      ++.+++.|++.|++.++...+...+++|++++++      |+.+..+ ......++.++|.+++++..  +||+.+++..
T Consensus       171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~  241 (521)
T KOG0255|consen  171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS  241 (521)
T ss_pred             HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence            9999999999999999999999999999999999      9999999 88888888899998988877  8999999887


Q ss_pred             HHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCC-----ccch
Q 008355          218 VAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLEST-----SKFK  292 (568)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-----~~~~  292 (568)
                      +..++.++..++                                .||+|+|+..+++.+++.+..+++.+.     ....
T Consensus       242 ~~~~~~~~~~~l--------------------------------~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~  289 (521)
T KOG0255|consen  242 IPSGLFLLLWFL--------------------------------PPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKE  289 (521)
T ss_pred             HHHHHHHHHHHc--------------------------------cCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHH
Confidence            766655544222                                224444444444443333322222110     0000


Q ss_pred             hhhhhhhhccccccCCCC-CCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCch
Q 008355          293 FFDKAAVETQTDRVKGSA-DPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSA  371 (568)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (568)
                      ..+.............++ ..+.+..+.+ +.++++.......   ..+...+...  .+.      ...++    ....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~~---~~~~~~y~gl--~~~------~~~lg----~~~~  353 (521)
T KOG0255|consen  290 LLRLELLLRPLKLLFTEPKISFLDLFRTP-RLRYRTLYLLFIW---FVFSLVYYGL--SLN------VSGLG----GNIY  353 (521)
T ss_pred             HHHHHHHhhHhhhhccCCCCchhhhhcCH-HHHHHHHHHHHHH---HHHhHHHHhh--hhh------hhhcC----chHH
Confidence            000000000000000000 0111111111 1122222111111   0011111110  000      00011    1111


Q ss_pred             hhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceee
Q 008355          372 SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMT  451 (568)
Q Consensus       372 ~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (568)
                      ..+......-.... ...   ....++       .+++.....+..+..+++++.++....                 ..
T Consensus       354 ~~~~~~~~~~~p~~-~~~---~~~~~~-------~gR~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~  405 (521)
T KOG0255|consen  354 LNFTLSGLVELPAY-FRN---GLLLPE-------FGRRPPLFLSLFLAGIGLLLFGWLPDD-----------------LG  405 (521)
T ss_pred             HHHHHHHHHHhhHH-HHH---HHHHHH-------hCcHHHHHHHHHHHHHHHHHHHHhhcc-----------------ch
Confidence            11111111111111 111   112233       334456778888888888887776522                 11


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccc
Q 008355          452 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRG  531 (568)
Q Consensus       452 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~  531 (568)
                      .+.......+..++....+...+.+..|+.|+..|..+.+..+....+|.+++|.+.........     ..        
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~-----~~--------  472 (521)
T KOG0255|consen  406 GWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP-----LL--------  472 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cc--------
Confidence            12233333444455555565669999999999999999999999999999999888764432110     00        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhceecc
Q 008355          532 HLDYFYWLLTILSVLNFLVYLWIAKWFTYKK  562 (568)
Q Consensus       532 ~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~  562 (568)
                          .+..++..+.+...+...+.|+++.+.
T Consensus       473 ----~~~~~~~~~~l~~~~~~~~lpet~~~~  499 (521)
T KOG0255|consen  473 ----GLILFGWLALLLGLLSLLLLPETKGKP  499 (521)
T ss_pred             ----hHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence                112246667777666767888877654

>PRK09669 putative symporter YagG; Provisional

Probab=99.78  E-value=7.1e-17  Score=171.85  Aligned_cols=178  Identities=12%  Similarity=0.078  Sum_probs=125.4

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhh----ccCc-hHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS----YMGR-FWTIASFSII  105 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr----~~Gr-k~~~~~~~~~  105 (568)
                      .+.--++.+..+..+..+..+++.|+++.+|++..++|.+..+..+...+..|+.|+++||    + || |+.++.+.+.
T Consensus        11 ~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~   89 (444)
T PRK09669         11 KIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIP   89 (444)
T ss_pred             HHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHH
Confidence            3444566677777777788899999999999999999999999999999999999999999    5 77 4556667677


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCC-CCchhhhhhhhhhhh
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE-TDDGEREKKSSFFNW  184 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~  184 (568)
                      .++...++...   |..          ........+++..++.+.+......+..++.+|+.+. ++      |.+..++
T Consensus        90 ~~i~~~l~f~~---p~~----------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l~~~  150 (444)
T PRK09669         90 FGVVCLLTFYT---PDF----------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSLQSW  150 (444)
T ss_pred             HHHHHHHHHhC---CCC----------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHHHHH
Confidence            76666554433   210          0112345555555666666666777778899998854 44      8988888


Q ss_pred             HHHHHHHhHHHhhhhhhheec-------cccchhhhhHHHHHHHHHHHHHH
Q 008355          185 FYLSINIGALVASSVLVWIQM-------NVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~~~~i~~-------~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      .....++|..+++.+...+..       ..+|+..+.+.+++.++..+..+
T Consensus       151 r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~  201 (444)
T PRK09669        151 RFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF  201 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence            888888888887765433322       24677666666655444444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.78  E-value=2.3e-16  Score=164.00  Aligned_cols=383  Identities=13%  Similarity=0.153  Sum_probs=211.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008355           34 ILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL  113 (568)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~  113 (568)
                      +....++..+.+-...++++.|+++ .|+|..|+|.+.+...+...+.+++.|+++||...+||.+.+..++.++.....
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555677899999985 789999999999999999999999999999998456777777766666655555


Q ss_pred             HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhH
Q 008355          114 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA  193 (568)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  193 (568)
                      ...                   .+++.+++..++..+......|...++.-+...+        +++-+|-..+..++|.
T Consensus        86 ~~~-------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf  138 (400)
T PF03825_consen   86 AFS-------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGF  138 (400)
T ss_pred             HHh-------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHH
Confidence            444                   3456666666677777777777777777666552        3333455555556666


Q ss_pred             HHhhhh-hhheecccc---chhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhh
Q 008355          194 LVASSV-LVWIQMNVG---WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL  269 (568)
Q Consensus       194 ~~~p~~-~~~i~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (568)
                      +++... ++.+....+   ....+++.+...++.....+. .++.+.++..+++.++                       
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~-----------------------  194 (400)
T PF03825_consen  139 IVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKK-----------------------  194 (400)
T ss_pred             HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCccc-----------------------
Confidence            655433 222222222   233455544333222222222 2211100000000000                       


Q ss_pred             hhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccc
Q 008355          270 YETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMST  349 (568)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (568)
                                           ....+.                ++     -.++++.....+..++..... ..+..+.+
T Consensus       195 ---------------------~~~~~~----------------~~-----llk~~~~~~Fll~~~l~~~~~-~~~~~f~~  231 (400)
T PF03825_consen  195 ---------------------LLGLDA----------------LK-----LLKNPRFLVFLLAAFLIGISH-AAYYTFFS  231 (400)
T ss_pred             ---------------------ccchHH----------------HH-----HhcCccHHHHHHHHHHHHHHH-HHHHHHHH
Confidence                                 000000                00     001111111111111112111 11222222


Q ss_pred             eeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 008355          350 MFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGIL  429 (568)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  429 (568)
                      .+..+.       + ++.  ......     ....+.+.+-...-..+|..+|   .+..+.+.++.+..++-...++..
T Consensus       232 ~yl~~~-------g-g~~--~~~~g~-----~~~l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  232 IYLQEL-------G-GYS--GSTIGI-----LWALGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHc-------c-cch--hhHHHH-----HHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh
Confidence            221111       1 110  000110     1111112222222233444443   677788899999988888877755


Q ss_pred             HHHhhhhhhccCcCCCCCceeehhh----HHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHH-HHHHHHHHH
Q 008355          430 EVVRLNIVKRNNYYDIETIPMTIFW----QVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT-TVAVGNYLS  504 (568)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~lg~~lg  504 (568)
                      ..                   +.+.    +.....+.|+..++...+...|+.+.+|++.|++++++++. ..++|+.+|
T Consensus       294 ~~-------------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG  354 (400)
T PF03825_consen  294 SD-------------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG  354 (400)
T ss_pred             cC-------------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence            21                   2222    22223568999999999999999999999999999999885 478999999


Q ss_pred             HHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008355          505 TLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWF  558 (568)
Q Consensus       505 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~  558 (568)
                      +.++|++.+..+.+..-          .+..++.+.+++.++..+++++..|++
T Consensus       355 ~~igG~l~~~~g~~~~~----------~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  355 SLIGGWLYDAFGARGMF----------DWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHhcchhhh----------hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999998765322111          123455566666666666666665543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.5e-18  Score=172.24  Aligned_cols=405  Identities=13%  Similarity=0.053  Sum_probs=214.3

Q ss_pred             CChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHH
Q 008355           62 QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVT  141 (568)
Q Consensus        62 ~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (568)
                      +++...+.++.+..++..+++++.||++||+ |||+++-..+++..++++.+++....+.            ...-+..+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~~------------~~~~m~~L  147 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTTS------------PLGVMMTL  147 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCCC------------CcchhhHH
Confidence            5566788999999999999999999999999 9999999999999999987766522111            22456789


Q ss_pred             HHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH----HHHHHHhHHHhhhhhhheecc-----------
Q 008355          142 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF----YLSINIGALVASSVLVWIQMN-----------  206 (568)
Q Consensus       142 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~ig~~~~p~~~~~i~~~-----------  206 (568)
                      ...|+++|+|.|+-+|...+..+|..-.+.      ||...+..    .++.-.|++++-++.+.....           
T Consensus       148 ~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld  221 (538)
T KOG0252|consen  148 CFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLD  221 (538)
T ss_pred             HHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHH
Confidence            999999999999999999999999887777      87776653    444444555544444333221           


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhh--hhhhccCcc
Q 008355          207 VGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADE--ECNIQGSRK  284 (568)
Q Consensus       207 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~  284 (568)
                      .=||..|.+.++..++.   +.+..                             .+||++++....+++  ...+...++
T Consensus       222 ~vWRl~~glg~vpa~~~---ly~Rl-----------------------------~M~Et~~Y~al~~~~~~~a~~d~~k~  269 (538)
T KOG0252|consen  222 GVWRIIFGLGAVPALLV---LYFRL-----------------------------KMPETARYTALVSKKLKQAAGDMKKV  269 (538)
T ss_pred             HHHHHHHHHHHHHHHHH---HHhhh-----------------------------cCCcchhHHHHhhcCHhhhhhccccc
Confidence            12888777666543322   22211                             122222221111100  000001111


Q ss_pred             ccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCC
Q 008355          285 LESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGP  364 (568)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (568)
                      ++.    ...+..      .. +....+.+.....-.....+. ....++.....++......++.-..|....+ .++ 
T Consensus       270 ~~~----~~~~~~------~~-~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig-  335 (538)
T KOG0252|consen  270 LSV----DIEAES------TA-ESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIG-  335 (538)
T ss_pred             ccc----ccchhh------cc-ccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hhc-
Confidence            111    000000      00 000001000000001111111 1111122222222222222221111211111 000 


Q ss_pred             CcccCchhh-----ccccchhhhhhhhh-hhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008355          365 NFKIPSASL-----SLFDTLSVIFWAPI-YDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVK  438 (568)
Q Consensus       365 ~~~~~~~~~-----~~~~~~~~i~~~~l-~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~  438 (568)
                       +.-.....     .+.........+.+ .-++..-+.++.+       +.+.-+.|+.++++.+++++..-.+      
T Consensus       336 -~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iG-------Rk~iq~~GF~~~~i~~~~~~~~y~~------  401 (538)
T KOG0252|consen  336 -VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIG-------RKYIQLMGFFIMTIFFFVIAGPYNQ------  401 (538)
T ss_pred             -cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhh-------hHHHHHhhHHHHHHHHHHHcCCccc------
Confidence             00000000     11111111222222 1111112344433       3345677888888888777643210      


Q ss_pred             ccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 008355          439 RNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKN  518 (568)
Q Consensus       439 ~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~  518 (568)
                             ..  ......+...+...++.-.-..+...+.+|.+|.+.||++.|++-..+..|.++|......+.+..   
T Consensus       402 -------~~--~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~---  469 (538)
T KOG0252|consen  402 -------LE--NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN---  469 (538)
T ss_pred             -------cc--ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc---
Confidence                   01  111112222222334444445667778899999999999999999999999999988777664421   


Q ss_pred             CCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceecccccC
Q 008355          519 GKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR  566 (568)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~~  566 (568)
                           +|.   ..+....+++++++++++.++.++ .||+++|++||.
T Consensus       470 -----yp~---~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~leei  508 (538)
T KOG0252|consen  470 -----YPP---NIGVRNVFIILAGCMLLGILFTLL-IPETKGKSLEEI  508 (538)
T ss_pred             -----CCc---cccchHHHHHHHHHHHHhHheeEE-eecccccCHHHh
Confidence                 111   223456789999999999877654 559999887764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.77  E-value=2e-16  Score=169.70  Aligned_cols=368  Identities=8%  Similarity=-0.012  Sum_probs=213.8

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhh----hccCc-hHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLAD----SYMGR-FWTIASFSIIY  106 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laD----r~~Gr-k~~~~~~~~~~  106 (568)
                      +.--++.+..++.+..+.++++.|+++.+|++...+|.+..+.-+...+..|+.|+++|    |+ || |+.++.+.+.+
T Consensus         9 ~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~   87 (473)
T PRK10429          9 LSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLAN   87 (473)
T ss_pred             HhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHH
Confidence            44456677788888888899999999999999999999999999999999999999999    77 87 66777777777


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCC-CCCchhhhhhhhhhhhH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFD-ETDDGEREKKSSFFNWF  185 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~  185 (568)
                      +++..++...   |..          ........+++..++.+++.........++.+|+.+ ++|      |.+..++.
T Consensus        88 ~i~~~llf~~---p~~----------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~~~~  148 (473)
T PRK10429         88 SVVLFLLFSA---HLF----------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLVPYP  148 (473)
T ss_pred             HHHHHHHHcC---CCC----------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHHHHH
Confidence            7776665433   210          001123344555556677787888888899999985 555      99999987


Q ss_pred             HHHHHHhHHHhhhhhhheec-------cccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhc
Q 008355          186 YLSINIGALVASSVLVWIQM-------NVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKS  258 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (568)
                      ....++|+.+.+.+...+..       ..+|+....+.++..++..+..+...++... +++.++.              
T Consensus       149 ~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~~--------------  213 (473)
T PRK10429        149 RFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVSA--------------  213 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-ccccccc--------------
Confidence            77778877666555443221       1245555444444444333333332222110 0000000              


Q ss_pred             ccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhh
Q 008355          259 NVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGI  338 (568)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (568)
                                                  ..++                    .++++..+.-.++ |.+...+...+...
T Consensus       214 ----------------------------~~~~--------------------~~~~~~~~~~~~n-~~~~~ll~~~~~~~  244 (473)
T PRK10429        214 ----------------------------EGSH--------------------LTLKDIVALIYKN-DQLSCLLGMALAYN  244 (473)
T ss_pred             ----------------------------cccC--------------------CCHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence                                        0000                    0000000000011 22222222222222


Q ss_pred             HHHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHH
Q 008355          339 VFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI  418 (568)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l  418 (568)
                      ...........++..+... +..       ..+.+.....+..++..++..+    +.+|       .++++.+.++.++
T Consensus       245 ~~~~~~~~~~~y~~~y~~~-~~~-------~~~~~~~~~~i~~ii~~~~~~~----l~~r-------~gkk~~~~~~~~~  305 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIG-DAD-------LFPYYLSYAGAANLVTLILFPR----LVKS-------LSRRILWAGASIF  305 (473)
T ss_pred             HHHHHHhhheeeEEEEECC-CHH-------HHHHHHHHHHHHHHHHHHHHHH----HHHH-------cCcHHHHHHHHHH
Confidence            2222323333333332211 000       0112222233344444444443    4555       3444556666666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCC-------hhhHHHHHH
Q 008355          419 SIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-------DAMRSLCSA  491 (568)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g  491 (568)
                      ..++.+........               .+.+.+.+++..++.+++.+...+..+++..|..+       ++..|...|
T Consensus       306 ~~~~~~~~~~~~~~---------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s  370 (473)
T PRK10429        306 PVLSCGVLLLMGLA---------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS  370 (473)
T ss_pred             HHHHHHHHHHHhcc---------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence            55554443322100               01134455556677888899888888999999976       556777999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008355          492 LSLTTVAVGNYLSTLLVTIVTKVTTK  517 (568)
Q Consensus       492 ~~~~~~~lg~~lg~~l~~~i~~~~~~  517 (568)
                      ..++...+|..+++.+.+.+.+..+.
T Consensus       371 ~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        371 VQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999998877654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.76  E-value=4.9e-17  Score=167.06  Aligned_cols=157  Identities=13%  Similarity=0.029  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHhCCChhh-hhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 008355           47 GMSTNLVNYLQKQLNQGNVT-ASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS  125 (568)
Q Consensus        47 ~~~~~l~~yl~~~lg~s~~~-~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  125 (568)
                      ...++..+|+.+++|++..+ .|.+.+++..++.++.+++|+++||+ |.|+++.++.+.+++..++++++         
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa---------  112 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG---------  112 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH---------
Confidence            34466778999999999999 99999999999999999999999999 99999999999999999999998         


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheec
Q 008355          126 CDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM  205 (568)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~  205 (568)
                                .+...+.+.|++.|++.|... +...++..++|+++      |+++.++.+.+.++|.+++++++++ ..
T Consensus       113 ----------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~ql-l~  174 (511)
T TIGR00806       113 ----------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQL-LV  174 (511)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence                      447889999999999999999 99999999999998      9999999999999999999999998 55


Q ss_pred             cccchhhhh---HHHHHHHHHHHHHHhcC
Q 008355          206 NVGWGWGFG---IPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       206 ~~g~~~~f~---~~~~~~~~~~~~~~~~~  231 (568)
                      .+||++-+.   +......+++++.++.+
T Consensus       175 s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       175 TLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            689886553   34444555555544443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09848 glucuronide transporter; Provisional

Probab=99.76  E-value=7.1e-16  Score=164.37  Aligned_cols=365  Identities=10%  Similarity=0.016  Sum_probs=198.3

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc---cCchH-HHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRFW-TIASFSIIY  106 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~---~Grk~-~~~~~~~~~  106 (568)
                      .+.-.+..+..+..+....++++.|+++.+|++..++|.+.+...+...+..++.|+++||.   +|||| .+..+.+..
T Consensus        10 ~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~   89 (448)
T PRK09848         10 IVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL   89 (448)
T ss_pred             HHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence            34445677778888888888999999999999999999999999999999999999999995   26666 445555555


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      .+...++...   |.-.         ......+..++..++.+++.+...++..++..++.+..++     |.+..++..
T Consensus        90 ~~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r~  152 (448)
T PRK09848         90 MIFSVLVFWV---PTDW---------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAARG  152 (448)
T ss_pred             HHHHHHHHhC---cCCC---------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHHH
Confidence            5444433211   1000         0011233344455667888888888888887777655331     777766554


Q ss_pred             HH-----HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccc
Q 008355          187 LS-----INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVV  261 (568)
Q Consensus       187 ~~-----~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (568)
                      ++     .+++..++|.+.+.........+..+. .+..+++.+..+......++..+++.+.....+....        
T Consensus       153 ~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--------  223 (448)
T PRK09848        153 IAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQT--------  223 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHHH--------
Confidence            43     345666667665543221111111111 1111222221111111111100000000000000000        


Q ss_pred             cCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHH
Q 008355          262 VPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFA  341 (568)
Q Consensus       262 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (568)
                                                                                 ....|.+........+....+
T Consensus       224 -----------------------------------------------------------l~~n~~f~~~~~~~~~~~~~~  244 (448)
T PRK09848        224 -----------------------------------------------------------LKRNRPLFMLCIGALCVLIST  244 (448)
T ss_pred             -----------------------------------------------------------HhCCchHHHHHHHHHHHHHHH
Confidence                                                                       000111111111111111111


Q ss_pred             hhhccccceeEeecccccCCCCCCcccCchhhcccc-chhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 008355          342 TVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFD-TLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI  420 (568)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~  420 (568)
                      ........++.....+.+..        ...+...+ .+..++..++..+    +.+|       .++++.+.+|.++..
T Consensus       245 ~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~l~~~----l~~r-------~g~~~~~~~g~~~~~  305 (448)
T PRK09848        245 FAVSASSLFYVRYVLNDTGL--------FTVLVLVQNLVGTVASAPLVPG----MVAR-------IGKKNTFLIGALLGT  305 (448)
T ss_pred             HHHhhhheeeEeeecCChHH--------HHHHHHHHHHHHHHHHHHHHHH----HHHH-------hCcHHHHHHHHHHHH
Confidence            12222223333221111000        01111111 1222333333333    4444       445567788888877


Q ss_pred             HHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChh-------hHHHHHHHH
Q 008355          421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDA-------MRSLCSALS  493 (568)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~-------~rg~~~g~~  493 (568)
                      ++.+.+.....                  .+.+..+...++.++|+++..+..++...|..|.+       .+|...|++
T Consensus       306 i~~~~~~~~~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~  367 (448)
T PRK09848        306 CGYLLFFWVSV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF  367 (448)
T ss_pred             HHHHHHHHcCc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence            77665543210                  14445555677889999999999999999998754       569999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcc
Q 008355          494 LTTVAVGNYLSTLLVTIVTKVTTK  517 (568)
Q Consensus       494 ~~~~~lg~~lg~~l~~~i~~~~~~  517 (568)
                      ++...+|..+|+.+.+.+.+..+.
T Consensus       368 ~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        368 SFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999988776643

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.76  E-value=9.9e-17  Score=176.65  Aligned_cols=198  Identities=16%  Similarity=0.172  Sum_probs=150.9

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      ++|.+++.+....+.+....++.......++++++++..+.|++.+.+.+++.++.++.|+++||+ ||||.+.++.+++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~  108 (633)
T TIGR00805        30 KIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIM  108 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHH
Confidence            345444444445555556666777777788999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHhhhccC-C----------------CCCCCCC------------CCCC-C--CchhHHHHHHHHHHHhhccc
Q 008355          107 CLGMTLLTLTASVSG-L----------------KPSCDKD------------ACHP-T--GAQTAVTFVALYLIALGTGG  154 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~-~----------------~~~~~~~------------~~~~-~--~~~~~~~~~~~~l~g~g~g~  154 (568)
                      +++.+++++.+.+.. +                ..-|+..            .|.+ .  ...+..++++|+++|+|.+.
T Consensus       109 ~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~  188 (633)
T TIGR00805       109 GLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP  188 (633)
T ss_pred             HHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc
Confidence            999999887642210 0                0011100            0111 1  12456788999999999999


Q ss_pred             CcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccc----------------------cchhh
Q 008355          155 IKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV----------------------GWGWG  212 (568)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~----------------------g~~~~  212 (568)
                      ..+...+++.|++|+++      |++.+++++.+..+|+.+|+++++++.+.+                      +|+..
T Consensus       189 ~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~  262 (633)
T TIGR00805       189 IFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG  262 (633)
T ss_pred             chhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence            99999999999999998      999999999999999999999999877532                      26777


Q ss_pred             hhHHHHHHHHHHHHHHhcC
Q 008355          213 FGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       213 f~~~~~~~~~~~~~~~~~~  231 (568)
                      |++.+++.++..+.++...
T Consensus       263 Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       263 FLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             HHHHHHHHHHHHHHHHhCc
Confidence            8777765555544444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.74  E-value=5.5e-16  Score=150.99  Aligned_cols=432  Identities=11%  Similarity=0.040  Sum_probs=244.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 008355           36 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL  115 (568)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~  115 (568)
                      ................+.+-++..+|.+..+..++......+..++....|.++|++ |||+.+....+...+.-.+-+.
T Consensus        84 g~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~  162 (528)
T KOG0253|consen   84 GMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGA  162 (528)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcC
Confidence            333344444445555566677888999988999999999999999999999999999 9999998887766665555554


Q ss_pred             hhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHH
Q 008355          116 TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALV  195 (568)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  195 (568)
                      +                   +|+..+.+.|.+.|+|.|+ .|...++-.|..|..+      |....=.. ....+|.++
T Consensus       163 s-------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~  215 (528)
T KOG0253|consen  163 S-------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVF  215 (528)
T ss_pred             C-------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHH
Confidence            4                   6788899999999999999 8899999999999887      77665555 677888888


Q ss_pred             hhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhh
Q 008355          196 ASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADE  275 (568)
Q Consensus       196 ~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (568)
                      ...+.-....++||||..........++....++.....|..-.++++.+ .+..+....+....++|........+++.
T Consensus       216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k-AletL~kiArmNg~qlplgvl~~s~~~~~  294 (528)
T KOG0253|consen  216 EALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK-ALETLHKIARMNGKQLPLGVLESSAIDRQ  294 (528)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH-HHHHHHHHHHhcCCCCCcceeeeehhhhh
Confidence            87777667778899998777665555555444444443343333444332 23333444444455566544444444433


Q ss_pred             hhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhh-------hcccc
Q 008355          276 ECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATV-------YSQMS  348 (568)
Q Consensus       276 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  348 (568)
                      |+.+...            |+.+.+..++.    ...-+.+  -..+-+|+.+.+...++...+.+..       ..|..
T Consensus       295 e~e~~~~------------~~~~~~a~ke~----rg~~~nL--lsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsg  356 (528)
T KOG0253|consen  295 EQEESDL------------DDSKSSAAKEV----RGGTTNL--LSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSG  356 (528)
T ss_pred             hhhhhch------------hhhhhcccccc----ccchHhh--cChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            3322211            11111111100    0000000  0112344444333333322222111       11111


Q ss_pred             c---ee-EeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 008355          349 T---MF-VLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV  424 (568)
Q Consensus       349 ~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~  424 (568)
                      .   .+ -..+...............+...   .+..-+...-...+...+.+|++||       +.|...++++++..+
T Consensus       357 d~c~~~~r~~p~e~e~~~~c~~s~~~dYrd---llitslaefPGlLIt~~iverlGRK-------kTMal~l~~f~iflf  426 (528)
T KOG0253|consen  357 DACPLYNRFLPTELETRANCPLSVAKDYRD---LLITSLAEFPGLLITGVIVERLGRK-------KTMALSLILFGIFLF  426 (528)
T ss_pred             CccccchhcchhHHHhhhcCCccchhHHHH---HHHHHHhhCCchhHHHHHHHHhcch-------hHHHHHHHHHHHHHH
Confidence            1   00 00000011100000000011111   1111111111111111245554444       357777777766655


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHH
Q 008355          425 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLS  504 (568)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg  504 (568)
                      ......                    +.....+.++..-......+...+.|..|.+|...|+++.|....++.+|+++.
T Consensus       427 ll~~c~--------------------~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~  486 (528)
T KOG0253|consen  427 LLTTCK--------------------TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFS  486 (528)
T ss_pred             HHHHhc--------------------CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhh
Confidence            544332                    111122222333344455566789999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceecc
Q 008355          505 TLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK  562 (568)
Q Consensus       505 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~  562 (568)
                      |++. +..+...      .           ..-++++++++++.+...++-.|+|+|.
T Consensus       487 p~iA-~~~e~s~------s-----------l~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  487 PVIA-MRAELST------S-----------LPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             hHHH-HHhccce------e-----------ehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            9888 3322111      0           1235667888888777777777888775

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.74  E-value=1.2e-15  Score=159.70  Aligned_cols=177  Identities=10%  Similarity=-0.083  Sum_probs=120.4

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhh--HHHHHHHHHhhhhhH-HHHhhhccCchHHHHHHHHHH-
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNN--VTNWSGTCYITPLIG-AFLADSYMGRFWTIASFSIIY-  106 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~--~~~~~~~~~i~~~~~-G~laDr~~Grk~~~~~~~~~~-  106 (568)
                      .+.++...+...+.+....+.+|.|++ +.|.|..++|..  .....+...+..|+. ++.+||+ ||||..++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            455666777888887888888998886 579999999997  355677777777777 6689998 9999876654332 


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      ++....+...  .+.             ......++....+.++..+...+...++..|..++++      ++...+...
T Consensus        81 ~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~  139 (390)
T TIGR02718        81 SACLASLALV--GPD-------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQI  139 (390)
T ss_pred             HHHHHHHHcC--Ccc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHH
Confidence            2122222211  011             0112233344444556666666666666677666665      777777888


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhc
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      .+..+|..+|+.+.+++.+.+|||..|++.++..++..+..+..
T Consensus       140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            88899999999888899999999999999887766555544433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.74  E-value=1e-15  Score=152.23  Aligned_cols=150  Identities=17%  Similarity=0.134  Sum_probs=125.1

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008355           33 FILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL  112 (568)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  112 (568)
                      ++...-|+.........-.+.+.+++.++++..+++.+..++..++.++.++.|++.+|+ |+|+.++.|+.++++|+.+
T Consensus        16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~l   94 (422)
T COG0738          16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAAL   94 (422)
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence            333333333333334455677789999999999999999999999999999999999999 9999999999999999998


Q ss_pred             HHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHh
Q 008355          113 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIG  192 (568)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  192 (568)
                      +.-++..                .++..++++.++.+.|.+...++..++++.+.++++      -..-+++.+..+.+|
T Consensus        95 F~pAa~~----------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lG  152 (422)
T COG0738          95 FWPAASS----------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLG  152 (422)
T ss_pred             Hhhhhhh----------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhH
Confidence            8644221                457889999999999999999999999999999876      555678888899999


Q ss_pred             HHHhhhhhhheec
Q 008355          193 ALVASSVLVWIQM  205 (568)
Q Consensus       193 ~~~~p~~~~~i~~  205 (568)
                      +.++|++++++..
T Consensus       153 a~~gp~~g~~lil  165 (422)
T COG0738         153 AILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987766

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.72  E-value=4.6e-16  Score=164.77  Aligned_cols=362  Identities=13%  Similarity=0.114  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhh----hccCchH-HHHHHHHHHHHHHH
Q 008355           37 NECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLAD----SYMGRFW-TIASFSIIYCLGMT  111 (568)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laD----r~~Grk~-~~~~~~~~~~i~~~  111 (568)
                      +.+..++.+.....+++.|+.+.+|+++..+|.+..+..+..++..|+.|+++|    |+ |||| .+++|.+..+++..
T Consensus         9 g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~   87 (428)
T PF13347_consen    9 GDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFF   87 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHH
Confidence            356677777777789999999999999999999999999999999999999999    78 7655 55567777788777


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      ++...  .|.-         .........+++..++..++......+..++.+|+.+.+++     |.+..++......+
T Consensus        88 llf~~--~p~~---------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~  151 (428)
T PF13347_consen   88 LLFSP--PPAG---------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMI  151 (428)
T ss_pred             Hhhcc--ccch---------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHH
Confidence            76643  0100         00011234456666677889999999999999999985432     99999998888888


Q ss_pred             hHHHhhhhhhheeccc-------cchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCC
Q 008355          192 GALVASSVLVWIQMNV-------GWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA  264 (568)
Q Consensus       192 g~~~~p~~~~~i~~~~-------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (568)
                      |..+...+.+.+.+..       +|++..++.++..++..+......++.+++.+++++..                   
T Consensus       152 g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~-------------------  212 (428)
T PF13347_consen  152 GSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKI-------------------  212 (428)
T ss_pred             HHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccc-------------------
Confidence            8876666665554322       57777776666555555554444333111111100000                   


Q ss_pred             cchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhh
Q 008355          265 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVY  344 (568)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (568)
                                                 ++                .+.++...    ++ |.+...+....+....+...
T Consensus       213 ---------------------------~~----------------~~~~~~~~----~n-r~~~~l~~~~~~~~~~~~~~  244 (428)
T PF13347_consen  213 ---------------------------SL----------------RDSLRSLF----RN-RPFRILLLAFFLQWLAFALM  244 (428)
T ss_pred             ---------------------------cc----------------ccchhhhc----cc-chHHHHHHHHHHHHhhhhhh
Confidence                                       00                00000000    11 11111111111111111111


Q ss_pred             ccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 008355          345 SQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV  424 (568)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~  424 (568)
                      .....++.......+.        ..+.+.....+..++..++..+    +.||.       ++++.+..+.++.+++.+
T Consensus       245 ~~~~~y~~~~vl~~~~--------~~~~~~~~~~~~~~v~~~~~~~----l~~r~-------gk~~~~~~~~~~~~~~~~  305 (428)
T PF13347_consen  245 NTFLPYYFTYVLGNEG--------LISIFMLIFFVASIVGSPLWGR----LSKRF-------GKKKVYIIGLLLAALGFL  305 (428)
T ss_pred             hhHHHHHHHHHhcCch--------hhHHHHHHHHHHHHHHHHHHHH----HHHHc-------cceeehhhhHHHHHHHHH
Confidence            1111122111111110        1112222333444445555444    55664       333467788888888887


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCC-------hhhHHHHHHHHHHHH
Q 008355          425 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-------DAMRSLCSALSLTTV  497 (568)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~  497 (568)
                      +..+...                  .+.++..+..++.+++.+...+..++...|..+       ++..|...|++++..
T Consensus       306 ~~~~~~~------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~  367 (428)
T PF13347_consen  306 LLFFLGP------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFI  367 (428)
T ss_pred             HHHHHHh------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhh
Confidence            7766542                  266777888899999999999999999999887       355799999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccCC
Q 008355          498 AVGNYLSTLLVTIVTKVTTKNG  519 (568)
Q Consensus       498 ~lg~~lg~~l~~~i~~~~~~~~  519 (568)
                      .++..+++.+.+.+.+..+.+.
T Consensus       368 k~~~~la~~i~g~~l~~~Gy~~  389 (428)
T PF13347_consen  368 KIGQGLAGAIVGLLLALVGYDA  389 (428)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCC
Confidence            9999999999998887765443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.72  E-value=2.5e-16  Score=161.02  Aligned_cols=392  Identities=9%  Similarity=0.031  Sum_probs=221.7

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .++.+......+...+++-...++++.+++++.|+|..++|.+.++..+...+.+|+.|.++||+ |.||-++....+..
T Consensus         6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILL   84 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHH
Confidence            44567777777777888888889999999999999999999999999999999999999999999 86665544332222


Q ss_pred             --HHHHHH-HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccC----cccccccccccCCCCCchhhhhhhh
Q 008355          108 --LGMTLL-TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGI----KPCVSSFGADQFDETDDGEREKKSS  180 (568)
Q Consensus       108 --i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~----~~~~~~~~~~~~~~~~~~~~~~r~~  180 (568)
                        .+.... ...   |.+.            .|   ++++.++.++..+..    .|...+++.+....        .+-
T Consensus        85 ~l~~pff~~v~~---pll~------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--------~~f  138 (412)
T PF01306_consen   85 LLFGPFFIYVFG---PLLQ------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--------NGF  138 (412)
T ss_dssp             HTCHHHHHHTHH---HHHH------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--------HSS
T ss_pred             HHHHHHHHHHHH---HHHH------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--------hcC
Confidence              122111 111   1000            11   233333333333333    33333333322110        222


Q ss_pred             hhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhccc
Q 008355          181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNV  260 (568)
Q Consensus       181 ~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (568)
                      =+|-..+..++|..++..++|.+.+ .+-+..||+.....++..++....+++..++.+..+..                
T Consensus       139 eYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~----------------  201 (412)
T PF01306_consen  139 EYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL----------------  201 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS----------------
T ss_pred             CcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc----------------
Confidence            2355677889999999999998876 46678888766555444444444433211111000000                


Q ss_pred             ccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHh-hhH
Q 008355          261 VVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWAS-GIV  339 (568)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  339 (568)
                                    .          .+.++.+.-|.                      .+....++......+... ...
T Consensus       202 --------------~----------~~~~~~~~~~~----------------------~~l~k~~~fw~~~l~v~g~~~~  235 (412)
T PF01306_consen  202 --------------G----------AKKDKVSLKDV----------------------LSLFKMRNFWFFVLFVIGVAAI  235 (412)
T ss_dssp             --------------S----------S------HHHH----------------------HHHTTSHHHHHHHHHHHHHHHH
T ss_pred             --------------c----------cCCCCCcHHHH----------------------HHHhcchhHHHHHHHHHHHHHH
Confidence                          0          00000000000                      001111223223333333 334


Q ss_pred             HHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHH
Q 008355          340 FATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS  419 (568)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~  419 (568)
                      +....+|.+.++..+..  +..      .....+...+.+.+++ -.+.-.+..++.+|       .++++.+.++..++
T Consensus       236 Y~vfdqqf~~y~~~~f~--~~~------~g~~~~G~l~s~~v~~-E~~~m~~~p~li~r-------ig~k~~Lllag~i~  299 (412)
T PF01306_consen  236 YDVFDQQFPIYFASFFQ--SAG------QGNQMYGYLWSVQVFL-EALMMFFSPWLINR-------IGAKNLLLLAGVIM  299 (412)
T ss_dssp             HHHHHHHHHHHHHHTSS--SHH------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------H-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc--ccc------cChhHHhHHHHHHHHH-HHHHHHHHHHHHHh-------cChHhHHHHHHHHH
Confidence            44444554444332211  000      1111122222111111 11111111224555       55666788888888


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHH-HHHHH
Q 008355          420 IFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS-LTTVA  498 (568)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~  498 (568)
                      ++-....+..+                    +++++.+.-.+.++-..+...+..-|+.+.+|++..++...+. ++..+
T Consensus       300 ~iRi~~~~~~~--------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~  359 (412)
T PF01306_consen  300 AIRIIGSGFAT--------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQ  359 (412)
T ss_dssp             HHHHHHHHT----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHH
T ss_pred             HHHHHHHhhhc--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH
Confidence            88877777554                    6677777888999999899999999999999999999999985 68899


Q ss_pred             HHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceec
Q 008355          499 VGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK  561 (568)
Q Consensus       499 lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~  561 (568)
                      +|..+.+.+.|.+.|..+                ++..|++++++.+...++.++..++.++.
T Consensus       360 ~~~~i~s~~~G~lyd~~G----------------~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  360 IGIIILSPLAGYLYDRIG----------------FQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHhhhHHhhHhhcC----------------cHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            999999999999887652                34578899999888888777777765553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.72  E-value=2.9e-15  Score=160.05  Aligned_cols=150  Identities=15%  Similarity=0.211  Sum_probs=122.4

Q ss_pred             HHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 008355           51 NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDA  130 (568)
Q Consensus        51 ~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  130 (568)
                      ....++.+++|-+ ....|+..+..+...+..++.|.++|.+ |||..++.+.++..+|.++++.+              
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA--------------  128 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA--------------  128 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC--------------
Confidence            4456788889865 5678888899999999999999999999 99999999999999999999988              


Q ss_pred             CCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccch
Q 008355          131 CHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWG  210 (568)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~  210 (568)
                           ++...++++..+.|+|.|... .....++|..|.+.      |..+.++......+....+|.++..+..+.+||
T Consensus       129 -----~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR  196 (599)
T PF06609_consen  129 -----QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWR  196 (599)
T ss_pred             -----CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence                 567889999999999977665 45666899999877      887777766666566667777776666667899


Q ss_pred             hhhhHHHHHHHHHHHHHH
Q 008355          211 WGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       211 ~~f~~~~~~~~~~~~~~~  228 (568)
                      |.|++.++...+++++.+
T Consensus       197 w~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999998877666654433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00788 fbt folate/biopterin transporter

Probab=99.71  E-value=8.6e-15  Score=156.34  Aligned_cols=379  Identities=15%  Similarity=0.103  Sum_probs=214.9

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccC-----chHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG-----RFWTIASFSI  104 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~G-----rk~~~~~~~~  104 (568)
                      .+.++....+...+. +.+...++.++++++|+|..+++...+...+...+-. +.|.++||+ +     ||+.+.++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-FAGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhc-CCCCccchHHHHHHHH
Confidence            344555567777777 8888888999999999999999888888888777744 599999999 7     7777777765


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008355          105 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW  184 (568)
Q Consensus       105 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (568)
                      +.. ......++.  +.              .......+.+++.+++.+....+..+++.|..+ ++++   .++...++
T Consensus       104 l~~-~~~~~~l~~--~~--------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~  162 (468)
T TIGR00788       104 LGS-AILYGLLPG--KV--------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSW  162 (468)
T ss_pred             HHH-HHHHHhccc--cc--------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeH
Confidence            542 122222220  10              123334447788899999999999999999998 4421   13445566


Q ss_pred             HHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeee-cCCCCChhHHHHHHHHHHHhhcccccC
Q 008355          185 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRI-QKPGGSPLTRIMQVIVASFRKSNVVVP  263 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (568)
                      .+...++|..+|+.++|.+.+.++|+..|++.++..++..+...+.++ .++ ..|+..+...                 
T Consensus       163 ~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E-~~~~~~~~~~~~~~-----------------  224 (468)
T TIGR00788       163 MWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKE-RRAFVRPRIGTYLE-----------------  224 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccc-ccccccccccccch-----------------
Confidence            666778999999999999999999999999887766666443333322 210 1111000000                 


Q ss_pred             CcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhh
Q 008355          264 ADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATV  343 (568)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (568)
                           ....           ...........+.                ++...  +....+.+...+.+.+..  +...
T Consensus       225 -----~~~~-----------~~~~~~~~~~~~~----------------~~~l~--~~l~~~~i~~~l~fifl~--~~~~  268 (468)
T TIGR00788       225 -----MNMA-----------LLTLGVLANVKVQ----------------ILGLR--GAIQLLEIAKPLIFIFLS--YANL  268 (468)
T ss_pred             -----hhhh-----------hhhhhHHHHHHHH----------------HHHHH--HHHhcHHHHHHHHHHHHH--Hhhc
Confidence                 0000           0000000000000                00000  000011111111111110  1111


Q ss_pred             hccccceeEeecccccCCCCCCcccCchh---hccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 008355          344 YSQMSTMFVLQGNTMDQHMGPNFKIPSAS---LSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI  420 (568)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~  420 (568)
                      .....+.+..+..    .++    .++..   +.....+..++...+.++    +.+|       .+.++.+.++.++.+
T Consensus       269 ~~~~~~~f~~~~~----~lG----~s~~~~G~~~~~~~v~~i~g~~~~~~----~~~~-------~~~r~~l~~~~~l~~  329 (468)
T TIGR00788       269 PGASGSVFCATTQ----CLP----GGPSFSGMSKVVGNLGSLCGVGGYDR----FLKT-------FPYRLLFGVTTLLYT  329 (468)
T ss_pred             CCCCceeEEEEcc----cCC----CCcchhhhHHHHHHHHHHHHHHHHHH----HHhh-------CCHHHHHHHHHHHHH
Confidence            1112122211111    112    11222   222222333333333322    3333       566667777777777


Q ss_pred             HHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHH
Q 008355          421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVG  500 (568)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg  500 (568)
                      ++.+....... +.+.         .....+.+++....++.+++.++...+...++.+..|++.+|+..|+.+...++|
T Consensus       330 ~~~~~~~~l~~-~~~~---------~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg  399 (468)
T TIGR00788       330 LSSLFDLILVK-RWNL---------AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLG  399 (468)
T ss_pred             HHHhCceeeee-cccc---------ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHH
Confidence            76544321110 0000         0000122344555677888888888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 008355          501 NYLSTLLVTIVTKVT  515 (568)
Q Consensus       501 ~~lg~~l~~~i~~~~  515 (568)
                      ..+++.+++.+.+..
T Consensus       400 ~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       400 SSVSGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999887654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.68  E-value=4.1e-15  Score=158.53  Aligned_cols=425  Identities=13%  Similarity=0.090  Sum_probs=249.9

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHH---HHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNL---VNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l---~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      -|++++..++.+...+++....   -..++++++.+..+++|+.++......+..|+.+.+.||+ |.|.+.++|.++.+
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence            3677777777777777665433   3456778999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHH-HHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL-YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      +|.++..++                   .+.+.+++.. ++.|+|.|........+++.+|+++       |+.+.|+-.
T Consensus       123 ~g~~lssF~-------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~  176 (509)
T KOG2504|consen  123 LGLLLSSFA-------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAV  176 (509)
T ss_pred             HHHHHHHHH-------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhh
Confidence            999999998                   4466666554 4569999999999999999888764       899999999


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcc
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADK  266 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (568)
                      .+..+|..+=|.+..++.+.+|||+.+++.+.+.+-.++.....++.....++.  ...+.-.        .....+ ..
T Consensus       177 ~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~~~~~~-~~  245 (509)
T KOG2504|consen  177 SGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------SAASVE-ST  245 (509)
T ss_pred             ccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------cccccc-cc
Confidence            999999999999999999999999999987766655555444444432222221  0000000        000000 00


Q ss_pred             hhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcc-c---chhhHHHHHHHHHHHHHHHhhhHHHh
Q 008355          267 SLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRL-C---TVTQVEELKAIIRLLPVWASGIVFAT  342 (568)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (568)
                      ....+....+      +...... .........+...++.  ...+.+. .   ..+..+++.-+...+...+....+..
T Consensus       246 ~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~  316 (509)
T KOG2504|consen  246 PKPVELRISE------RDSGLKK-LSLSNLATLKRGPDKW--RNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV  316 (509)
T ss_pred             cccccccccc------CCCCCCc-ccccchhhhhhCCccc--cccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            0000000000      0000000 0000000000000000  0001000 0   00111111111111111111111111


Q ss_pred             hhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 008355          343 VYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS  422 (568)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~  422 (568)
                      .+..++.+..  ....+..       ..+.+.++..+.-++.-++.+.    +.++..     .+......+++++++++
T Consensus       317 p~~~l~~~~~--~~g~~~~-------~aa~l~Siigi~~i~gRi~~G~----laD~~~-----~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  317 PFVYLPSYAK--SLGLSSN-------DAAFLLSIIGVSDIIGRIILGL----LADKPG-----IRALVLFLLTLLIAGLA  378 (509)
T ss_pred             HHHHHHHHHh--hcCCChh-------hhHHHHHHHHHhhhhhhhhhhh----hcCccc-----cchHHHHHHHHHHHHHH
Confidence            1111111111  0111111       1122223333333344444443    233311     22344556666666666


Q ss_pred             HHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHH
Q 008355          423 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNY  502 (568)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~  502 (568)
                      .++.....                    +++.++...+++|+..+...........|+.+.+.-..+.|+..+...++..
T Consensus       379 ~~~~p~~~--------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l  438 (509)
T KOG2504|consen  379 RLFLPFAT--------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL  438 (509)
T ss_pred             HHHHHHhc--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence            65554443                    5667777788889988888887778999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008355          503 LSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIA  555 (568)
Q Consensus       503 lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~  555 (568)
                      +||.+.+.+.|.++               +|+..|+..+++.+++.+.++...
T Consensus       439 ~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  439 VGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            99999997665442               234557777777777766555544

>PTZ00207 hypothetical protein; Provisional

Probab=99.67  E-value=7.6e-14  Score=150.21  Aligned_cols=175  Identities=14%  Similarity=0.057  Sum_probs=128.5

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      ++|..+...++...+.. ..|++.. ....+++++|++..+.+++.++.. ...++.++.|+++||+ |||+++.++.++
T Consensus        25 ~Rw~~lva~~~~~~~~g-~~y~fsv-~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll  100 (591)
T PTZ00207         25 RRFALLVLGAFCSICTS-FMYAFNL-ISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTV  100 (591)
T ss_pred             chHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            34544444444444433 3344443 444678899999999998887643 3446777899999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      +.+++++++++.+. .            ...+.+.+++.|++.|+|.+...+....++.++|| ++      ||++.++.
T Consensus       101 ~~iG~ll~ala~~~-~------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~  160 (591)
T PTZ00207        101 FCLGTLLFALTFQE-V------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIM  160 (591)
T ss_pred             HHHHHHHHHHHhcc-c------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHH
Confidence            99999999886210 0            01368889999999999999998888899999997 55      99999999


Q ss_pred             HHHHHHhHHH-hhhhhhheeccccchhhhhHHHHHHHHHHHH
Q 008355          186 YLSINIGALV-ASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       186 ~~~~~ig~~~-~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      ..+.++|+.+ +++..+++.  .+|+..|++.++..++..++
T Consensus       161 ~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        161 KTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHH
Confidence            9999999975 555555554  35777777666554444333

>PRK11462 putative transporter; Provisional

Probab=99.66  E-value=4.7e-14  Score=150.48  Aligned_cols=179  Identities=11%  Similarity=0.122  Sum_probs=127.2

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc---cCch-HHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRF-WTIASFSIIYC  107 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~---~Grk-~~~~~~~~~~~  107 (568)
                      +.--++.+..++.+..+..++..|+.+.+|+++..+|.+..+.-+..++.-|+.|+++||.   +||| +.++++.+.++
T Consensus        12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~   91 (460)
T PRK11462         12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG   91 (460)
T ss_pred             HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence            4455677777888888888999999999999999999999999999999999999999973   3775 45556767777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+++...   |..          ........+++.-++..++.........++.+|+.+..++     |++..++...
T Consensus        92 i~~~llf~~---p~~----------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r~~  153 (460)
T PRK11462         92 IVCVLAYST---PDL----------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWRFV  153 (460)
T ss_pred             HHHHHHHhC---CCC----------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHHHH
Confidence            777666543   210          0111233445555566778888888888999999875432     9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccc-------cchhhhhHHHHHHHHHHHHHH
Q 008355          188 SINIGALVASSVLVWIQMNV-------GWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~-------g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      +.++|..+++.+...+....       +|+....+.+++.++...+.+
T Consensus       154 ~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        154 LATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999888877765443322       455554444444333333333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.65  E-value=4.3e-14  Score=138.68  Aligned_cols=327  Identities=16%  Similarity=0.165  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 008355           50 TNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKD  129 (568)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  129 (568)
                      ..+..-+++++|+|.+.+|...+...++..+..++..+++.|+ |.++.+..++++.++|.++=...             
T Consensus        32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~-------------   97 (395)
T COG2807          32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG-------------   97 (395)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-------------
Confidence            3445567889999999999999999999999999999999999 99999999999988888775543             


Q ss_pred             CCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccc-c
Q 008355          130 ACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV-G  208 (568)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~-g  208 (568)
                             +...++.+-.+.|.|.+......++.+-+.||++       -+..+++|....++|+.+++.+...+.++. |
T Consensus        98 -------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~g  163 (395)
T COG2807          98 -------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGG  163 (395)
T ss_pred             -------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence                   3667899999999999999999999999999976       488899999999999999999998888877 7


Q ss_pred             chhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCC
Q 008355          209 WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLEST  288 (568)
Q Consensus       209 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~  288 (568)
                      |+....+-+...+++++..+.-..  +++.+..+..                ..                        + 
T Consensus       164 W~~aL~~WAl~allAl~~WlPq~~--r~~~~~~~~~----------------~~------------------------~-  200 (395)
T COG2807         164 WRGALGFWALLALLALLIWLPQAL--REQAASIATK----------------LV------------------------S-  200 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc--cccccccccc----------------cc------------------------c-
Confidence            999988777777666655433211  1100000000                00                        0 


Q ss_pred             ccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCccc
Q 008355          289 SKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKI  368 (568)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (568)
                                          +..-|+        ++..+...+.+-+-...+|....+++.++.++..  +..       
T Consensus       201 --------------------~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~--sa~-------  243 (395)
T COG2807         201 --------------------VRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL--SAA-------  243 (395)
T ss_pred             --------------------cccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC--CHH-------
Confidence                                011121        0111111222233455666777777776655432  111       


Q ss_pred             Cchhhccccchhhhhhhhhhhhhhhh-hhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCC
Q 008355          369 PSASLSLFDTLSVIFWAPIYDIVIVP-FARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIET  447 (568)
Q Consensus       369 ~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (568)
                      ..+.+-++..+..+...     +..| +.+|.      .+.+.......+++.++++.+.+...+               
T Consensus       244 ~aG~llsl~~l~~~~~~-----ll~P~la~R~------~n~r~~~~~~~~~~l~G~~G~~~~P~~---------------  297 (395)
T COG2807         244 EAGSLLSLMQLAQLPTA-----LLIPLLARRS------KNQRPLVVLALLLMLVGLVGLLLAPGQ---------------  297 (395)
T ss_pred             HhhhHHHHHHHHHHHHH-----HHHHHHHHHh------cccchHHHHHHHHHHHHHHHHHHhhhh---------------
Confidence            11112111112222222     2222 34442      223334555566666666655443321               


Q ss_pred             ceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008355          448 IPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-DAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTT  516 (568)
Q Consensus       448 ~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~  516 (568)
                         .++ +.  .++.|+|.+..+|....++...++ ++..+...|+.+..+.+=..+||.+.|.+.|.++
T Consensus       298 ---~~~-lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         298 ---LPI-LW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             ---HHH-HH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence               222 22  488999999999998888877776 5556677888888888889999999999988765

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.64  E-value=4.8e-14  Score=148.98  Aligned_cols=149  Identities=15%  Similarity=0.149  Sum_probs=127.0

Q ss_pred             HHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCch
Q 008355           58 KQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQ  137 (568)
Q Consensus        58 ~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (568)
                      +++++...+.+.+.++|.++++++.+++|.+.||+ .-.+.+....+.+.+..++....                   .|
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------~s  133 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------HS  133 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------hh
Confidence            56778888999999999999999999999999999 87777777777766666555555                   56


Q ss_pred             hHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhe------eccccchh
Q 008355          138 TAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI------QMNVGWGW  211 (568)
Q Consensus       138 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i------~~~~g~~~  211 (568)
                      .+.+++.|++.|+.++..+|+...+++.++.+++      |+.-+++++...++|.++|+++...+      ....||||
T Consensus       134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~  207 (495)
T KOG2533|consen  134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRW  207 (495)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCcee
Confidence            8889999999999999999999999999999999      99999999999999999999988775      33568999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCc
Q 008355          212 GFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       212 ~f~~~~~~~~~~~~~~~~~~~  232 (568)
                      .|++.+++.++..++.++..|
T Consensus       208 ~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  208 LFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             ehhHHHHHHHHHHheEEEEec
Confidence            999999776666555544433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.60  E-value=1.1e-12  Score=139.21  Aligned_cols=90  Identities=14%  Similarity=0.172  Sum_probs=73.4

Q ss_pred             ehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCcc
Q 008355          451 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNR  530 (568)
Q Consensus       451 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~  530 (568)
                      +.+...+.-++.|+..+...+...++..|+.|++.++...|++.+....+.++||++.+.+.+.++.             
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~-------------  445 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS-------------  445 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence            4444555667899999999999999999999999999999999999999999999999999887642             


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHh
Q 008355          531 GHLDYFYWLLTILSVLNFLVYLWIA  555 (568)
Q Consensus       531 ~~~~~~f~~~a~~~~v~~v~~~~~~  555 (568)
                        .+.-+..+.++.+++.++++.+.
T Consensus       446 --~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  446 --QRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             --chhHHHHHHHHHHHHHHHHhhcc
Confidence              23446777777888877664433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.58  E-value=1.2e-14  Score=156.58  Aligned_cols=178  Identities=14%  Similarity=0.115  Sum_probs=129.9

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      ++.....+...++.++.+|++..++|.|+++.+|++..+.++......++..++.++.|+++||+ |||+.+..+.+...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~  327 (490)
T PRK10642        249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALF  327 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            34444444445667788999999999999988999988888888888888999999999999999 99999888776544


Q ss_pred             HHHHH-HHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          108 LGMTL-LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       108 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      ++... .....+                 .+...+++++++.+++.+...+....++.+.+|++.      |++++++.+
T Consensus       328 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~  384 (490)
T PRK10642        328 VLAIPAFILINS-----------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAF  384 (490)
T ss_pred             HHHHHHHHHHhC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHH
Confidence            43332 222211                 235667778888888777666777888889999998      999999844


Q ss_pred             HHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHh
Q 008355          187 LSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      ....+++.++|.+.+++.+..+ |+.++++..+..+++++..++
T Consensus       385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            4456667889999998877654 676665555444444444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.58  E-value=2.3e-12  Score=133.41  Aligned_cols=370  Identities=13%  Similarity=0.083  Sum_probs=233.3

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc---cCc-hHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGR-FWTIASFS  103 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~---~Gr-k~~~~~~~  103 (568)
                      .|.-+.--...+..++.+..+..++..|+++..|+++..+|.+..+.=+.-++.-|+.|.++||.   +|| |+.++.+.
T Consensus        11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            34446666778888899999999999999999999999999999999999999999999999985   254 56777777


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      +.+++.+.++..+   |..          +........++.-.+.+++...+.....++.+++.+..++     |.+..+
T Consensus        91 ip~~i~~~l~F~~---p~~----------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~l~s  152 (467)
T COG2211          91 IPFAIVAVLLFIT---PDF----------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RASLTS  152 (467)
T ss_pred             HHHHHHHHHHHcC---CCc----------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHHHHH
Confidence            8888888888776   210          1123344455566778899999988999999999875542     999999


Q ss_pred             hHHHHHHHhHHHhhhhhhheec-------cccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHh
Q 008355          184 WFYLSINIGALVASSVLVWIQM-------NVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFR  256 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (568)
                      +-....++|..+...+.+.+..       ..||+..-.+.+++..++++..+...+|...++...++             
T Consensus       153 ~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~-------------  219 (467)
T COG2211         153 WRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT-------------  219 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-------------
Confidence            9999999997776665554443       23566555555554444544444433322111100000             


Q ss_pred             hcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHh
Q 008355          257 KSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWAS  336 (568)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (568)
                                                     +.+.++.+..                     ......|.+...+...++
T Consensus       220 -------------------------------~~~~~~~~~~---------------------~~~~~Nrp~~~~l~~~l~  247 (467)
T COG2211         220 -------------------------------GVKLKLKDSF---------------------LLIFKNRPLLLLLLMNLL  247 (467)
T ss_pred             -------------------------------cccccHHHHH---------------------HHHHccchHHHHHHHHHH
Confidence                                           0000000000                     000111222222223333


Q ss_pred             hhHHHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHH
Q 008355          337 GIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGL  416 (568)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  416 (568)
                      .............++.....+....       .+...........++..++..+    +.+|       +++++...++.
T Consensus       248 ~~~~~~i~~s~~~yy~~y~lg~~~l-------~~~~~~~~~~~~~l~~~~~~p~----L~~~-------~gkk~~~~~~~  309 (467)
T COG2211         248 LFIAFNIRGSIMVYYVTYVLGDPEL-------FAYLLLLASGAGLLIGLILWPR----LVKK-------FGKKKLFLIGL  309 (467)
T ss_pred             HHHHHHHHhhhhheeEEEEcCChHH-------HHHHHHHHHHHHHHHHHHhHHH----HHHH-------hchHHHHHHHH
Confidence            3333333344444444432211111       1111111111222222233222    4444       44456778888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCC-------hhhHHHH
Q 008355          417 LISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-------DAMRSLC  489 (568)
Q Consensus       417 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~  489 (568)
                      ++..++.+...+...                  .+.++.+...++.+++.+...+..|+.+.|...       .|..|..
T Consensus       310 ~~~~i~~~~~~f~~~------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~  371 (467)
T COG2211         310 LLLAVGYLLLYFTPA------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIV  371 (467)
T ss_pred             HHHHHHHHHHHhhcC------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhH
Confidence            888888777665541                  255666666788889999999999999988764       4567888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008355          490 SALSLTTVAVGNYLSTLLVTIVTKVTT  516 (568)
Q Consensus       490 ~g~~~~~~~lg~~lg~~l~~~i~~~~~  516 (568)
                      .|...+..-+|.+++..+.+++....+
T Consensus       372 ~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         372 YSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999887664

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.52  E-value=7.7e-14  Score=144.52  Aligned_cols=191  Identities=17%  Similarity=0.127  Sum_probs=144.7

Q ss_pred             CCccCCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHH-HhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCc-hHH
Q 008355           21 NKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQK-QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR-FWT   98 (568)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Gr-k~~   98 (568)
                      ....+.+||.+++..+..++....++.+.+..-+|+++ +.+.+....|++.++..++..++.+..|+++.|. |+ |+-
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P  104 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP  104 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence            34446789999999999999999988888888889875 4777788899999999999999999999999998 75 777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhh
Q 008355           99 IASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK  178 (568)
Q Consensus        99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  178 (568)
                      ++++.++.++|.++....+-.|.              ...+.++++|++.|+|.|.. ...-+++++....++      |
T Consensus       105 li~s~ii~~~g~llY~~l~~~~~--------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------R  163 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYVPN--------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------R  163 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc--------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------h
Confidence            77888999999988854434443              46889999999999998764 466788888877777      8


Q ss_pred             hhhhhhHHHHHHHhHHHhhhhhhhee----ccc---------cchhhhhHHHHHHHHHHHHHHhcCce
Q 008355          179 SSFFNWFYLSINIGALVASSVLVWIQ----MNV---------GWGWGFGIPAVAMAIAVVFFFSGSRL  233 (568)
Q Consensus       179 ~~~~~~~~~~~~ig~~~~p~~~~~i~----~~~---------g~~~~f~~~~~~~~~~~~~~~~~~~~  233 (568)
                      .++++....+..+|..+||.+...+.    +.+         -+..+-|+.++..++.++++....+|
T Consensus       164 ~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  164 PRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             HHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            99998877766777777776654332    111         13345566666666666555554444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.51  E-value=3.6e-13  Score=141.02  Aligned_cols=177  Identities=12%  Similarity=0.030  Sum_probs=134.3

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      +++..+..+...+.....++....++|.|+++++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+.+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~  292 (393)
T PRK15011        214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG  292 (393)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence            344445555555555556666777899999999999999999988887788888999999999999 9999887766555


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      .+........                   ++.+.+++.+++.+++.|...+..+.+..|.+|+ +      |+++.++++
T Consensus       293 ~~~~~~~~~~-------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~  346 (393)
T PRK15011        293 VCFYAGMLMA-------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYT  346 (393)
T ss_pred             HHHHHHHHHH-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHH
Confidence            4443333333                   2355566677777777666666666777888874 5      889999998


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhc
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      ...++|..++|.++|.+.+.+||+..|++.++..+++++..+..
T Consensus       347 ~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        347 NTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            88999999999999999998999999998877776666655543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.48  E-value=5.4e-11  Score=120.01  Aligned_cols=376  Identities=12%  Similarity=0.118  Sum_probs=215.7

Q ss_pred             HHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccC-----c-hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 008355           56 LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG-----R-FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKD  129 (568)
Q Consensus        56 l~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~G-----r-k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  129 (568)
                      +..+++++....+..++...+.+ ..++..|+.||+. +     | .+-++.|.+.++.+..+.+.+...-.   ....+
T Consensus         6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~---~~~~~   80 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA---ESGQQ   80 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc---ccccc
Confidence            45679999988888888777666 4699999999998 5     4 44566677777777776665422111   00000


Q ss_pred             CCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccc
Q 008355          130 ACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGW  209 (568)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~  209 (568)
                      .-.+.........+...+.|+|.+...++..++++|..|+++      |+++.++.+...-+|.+++.++.+.+.+.++.
T Consensus        81 ~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~  154 (403)
T PF03209_consen   81 SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP  154 (403)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            000111222234444556788888888899999999999998      99999999999999999999999988887763


Q ss_pred             hhhh-hHHH---HHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccc
Q 008355          210 GWGF-GIPA---VAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKL  285 (568)
Q Consensus       210 ~~~f-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  285 (568)
                      .-.. .+..   +..++.++..+-..++.++..+..+                                           
T Consensus       155 ~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~-------------------------------------------  191 (403)
T PF03209_consen  155 ERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE-------------------------------------------  191 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC-------------------------------------------
Confidence            2222 1111   2222222222222221111110000                                           


Q ss_pred             cCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCC
Q 008355          286 ESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPN  365 (568)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (568)
                        .++.++.+.                |++...+  .+.++++.  .+++....+++....+.+           .-++-
T Consensus       192 --~~~~~f~~a----------------~~~~~~~--~~a~~f~~--fl~l~t~a~~~QD~iLEP-----------ygg~V  238 (403)
T PF03209_consen  192 --RPRPPFREA----------------WRQVWAS--PQARRFFV--FLFLGTLAFFMQDVILEP-----------YGGEV  238 (403)
T ss_pred             --CCCccHHHH----------------HHHHHhC--CChhHHHH--HHHHHHHHHHhhHHHcCC-----------chhHH
Confidence              000000000                0000000  01122211  112222222222222111           11112


Q ss_pred             cccCchh---hccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCc
Q 008355          366 FKIPSAS---LSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNY  442 (568)
Q Consensus       366 ~~~~~~~---~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  442 (568)
                      ++++++.   ++.....+.++...+.++.   ..+|       .++.+...+|..++.+++.........          
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~---l~~~-------~~~~~~a~~G~~~~~~~f~lii~a~~~----------  298 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFL---LSRR-------LGKKRTAALGCLLGALAFALIILAGPL----------  298 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hcCC-------CCchHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            2233332   3333344444444444332   1122       444556667888887777665544321          


Q ss_pred             CCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 008355          443 YDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLG  522 (568)
Q Consensus       443 ~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~  522 (568)
                             .+.+.+-+..+++|++.++......+...++++++..|..+|.|...+.++..+|..+++.+.|....     
T Consensus       299 -------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~-----  366 (403)
T PF03209_consen  299 -------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA-----  366 (403)
T ss_pred             -------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence                   25667788889999999999999999999999999999999999999999999999999988776531     


Q ss_pred             CCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 008355          523 WIPDNLNRGHLDYFYWLLTILSVLNFLVY  551 (568)
Q Consensus       523 ~~~~~~~~~~~~~~f~~~a~~~~v~~v~~  551 (568)
                      +.. .-....|..+|.+=++..+++.++.
T Consensus       367 ~~~-~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  367 LFG-NSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             hcc-CCcchHHHHHHHHHHHHHHHHHHHH
Confidence            111 0012244555555555555554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.45  E-value=6.7e-13  Score=142.29  Aligned_cols=176  Identities=12%  Similarity=0.046  Sum_probs=134.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.+|.+.+..++....++++..|+|.|+++++|+|..+.++..+.+.++..++.+++|+++||+ |||+.+........+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4577888888888888888999999999999999999999999999999999999999999999 999877665444443


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +..+.....  .               .+....++.+++.|+...+..........|.+|+++      |+++.|+.+..
T Consensus       337 ~~~~~~~~~--~---------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~  393 (467)
T PRK09556        337 IFTLGVYQH--A---------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTF  393 (467)
T ss_pred             HHHHHHHHh--c---------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHH
Confidence            332222220  0               234455566677775443333233356679999988      99999999988


Q ss_pred             HHH-hHHHhhhhhhheec------------cccchhhhhHHHHHHHHHHHHHH
Q 008355          189 INI-GALVASSVLVWIQM------------NVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       189 ~~i-g~~~~p~~~~~i~~------------~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      .++ |+.++|.+.|++.+            ..||+..|++..+..+++.+..+
T Consensus       394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            886 77999999999998            57899999887766666655444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.45  E-value=1.2e-13  Score=130.16  Aligned_cols=400  Identities=10%  Similarity=0.105  Sum_probs=226.0

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      +...++..+...++|- --.-+..+.+++.++..++..++.+.++.=..+.+.++|++.||.+|-|..-++-..+..+|-
T Consensus        46 lv~mc~lgfgsyfcyd-~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~Gq  124 (459)
T KOG4686|consen   46 LVFMCLLGFGSYFCYD-APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQ  124 (459)
T ss_pred             HHHHHHhcccceeecC-CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHH
Confidence            3344444444444432 223356677777788778888999999999999999999999999898877666666677777


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHH
Q 008355          111 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN  190 (568)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (568)
                      ++++..-                ..+.+|.+..+|++.|+|.-....+...+...+|..+|      .+.++|+......
T Consensus       125 liFa~Gg----------------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR  182 (459)
T KOG4686|consen  125 LIFAAGG----------------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVAR  182 (459)
T ss_pred             HHHHhch----------------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHH
Confidence            7766431                11568999999999999988888888999999999999      9999999988889


Q ss_pred             HhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhh
Q 008355          191 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLY  270 (568)
Q Consensus       191 ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (568)
                      +|...--.+.+++.+..+--.+   ...-..+++.+.+-.+...       .++       ..+...   ..        
T Consensus       183 ~GstvNf~lm~~ly~~~~~~~~---~~ghT~LG~~l~~~~~tc~-------~sl-------ical~l---g~--------  234 (459)
T KOG4686|consen  183 LGSTVNFLLMPFLYDTMGRMFP---GVGHTLLGLWLCFEVKTCK-------QSL-------ICALSL---GL--------  234 (459)
T ss_pred             hhceeeeeecHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHH-------HHH-------HHHHHh---hh--------
Confidence            9988877777777765542111   1111112222111100000       000       000000   00        


Q ss_pred             hhhhhhhhhccCcccc--CCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhcccc
Q 008355          271 ETADEECNIQGSRKLE--STSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMS  348 (568)
Q Consensus       271 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (568)
                      ..++   +++..++-+  .++..+..|..           +..|             .+.....++.+.-..|..+....
T Consensus       235 ~D~r---Aerilh~e~g~~Ge~pkLtdv~-----------~f~p-------------pfw~~~iicv~yyva~fPFi~lg  287 (459)
T KOG4686|consen  235 SDDR---AERILHLEEGFLGEEPKLTDVN-----------TFYP-------------PFWVLVIICVLYYVAWFPFITLG  287 (459)
T ss_pred             hhhH---HHHHHhhhcCcccCCccccccc-----------ccCc-------------cHHHHHHHHHHHHHHHHHHhhhh
Confidence            0000   000000000  00000000000           0001             01111112222222223333333


Q ss_pred             ceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008355          349 TMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI  428 (568)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  428 (568)
                      ..+.+      ...| -.....+.+.+.......+..|+.+.+.++.+++          .+++.-+.++..++-....+
T Consensus       288 ~~fF~------~rfG-lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n----------~~wv~~a~~~tl~~H~~l~F  350 (459)
T KOG4686|consen  288 PMFFQ------KRFG-LSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN----------LWWVASACILTLLGHSGLFF  350 (459)
T ss_pred             HHHHH------HhhC-CChhhccchhhhhhhhhhhhhhhHHHhHhhhcce----------ehhHHHHHHHHHHHhhhHHh
Confidence            32222      1112 0011122222333344455667766654444433          12333343333333222221


Q ss_pred             HHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008355          429 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLV  508 (568)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~  508 (568)
                                            +.+--.....+.|+...+.....|..+..+.|++.-|++.|..+...++|-.+.|++.
T Consensus       351 ----------------------t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iia  408 (459)
T KOG4686|consen  351 ----------------------TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIA  408 (459)
T ss_pred             ----------------------hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhh
Confidence                                  2222234567788888888888999999999999999999999999999999999999


Q ss_pred             HHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhce
Q 008355          509 TIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT  559 (568)
Q Consensus       509 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~  559 (568)
                      +++.+..+.     +       .+.+.+|.....+++.+..+.+.+-++..
T Consensus       409 g~i~d~~g~-----y-------~~le~ffl~~~~~aL~svgil~~~N~kq~  447 (459)
T KOG4686|consen  409 GFIADGDGS-----Y-------DNLEAFFLIIGLMALTSVGILFYLNKKQS  447 (459)
T ss_pred             heeecCCCc-----h-------hhHHHHHHHHHHHHHHHHHHHhheecccc
Confidence            988764321     1       13445666667777777766666555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.45  E-value=6.5e-13  Score=137.34  Aligned_cols=170  Identities=12%  Similarity=0.093  Sum_probs=136.3

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +..+.+....++..+.......+.+.|. +++|.+..+.+.+.+.+.+...++.++.|+++||+ |||+.+.++.+...+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV  282 (377)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence            3445555555555555555566677775 56899988899999999999999999999999999 999999998888888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +.++.....+                 .+...+++..++.+++.+...+..+.++.|.+|+++      |++++++++..
T Consensus       283 ~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~  339 (377)
T TIGR00890       283 GMAAMLFIPM-----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTA  339 (377)
T ss_pred             HHHHHHHccc-----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHH
Confidence            7776665511                 123334455677888888888888899999999988      99999999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIA  223 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~  223 (568)
                      .++|..++|.+.+.+.+..||++.|.+.++..+++
T Consensus       340 ~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       340 KAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            99999999999999999999999998877665544

>PRK09952 shikimate transporter; Provisional

Probab=99.44  E-value=1.3e-12  Score=138.83  Aligned_cols=182  Identities=15%  Similarity=0.079  Sum_probs=131.4

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      +++.....+...++..+.+|....+++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence            344434444456677788899999999999999999887666555566677788889999999999 9999988876655


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh-H
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-F  185 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~  185 (568)
                      .++...+..... ..              .+...+++..++.+++.+...+..+++++|.+|.+.      |+++.++ +
T Consensus       327 ~~~~~~~~~~~~-~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~  385 (438)
T PRK09952        327 TLSAFPFFMALE-AQ--------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGY  385 (438)
T ss_pred             HHHHHHHHHHHH-cC--------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHH
Confidence            544433322210 00              123344455566678888778888999999999987      9999988 5


Q ss_pred             HHHHHHhHHHhhhhhhheeccc--cchhhhhHHHHHHHHHHHHHHhc
Q 008355          186 YLSINIGALVASSVLVWIQMNV--GWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~--g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      ..+..+|+.++|.+.+++.+..  +|...+...++..+++.+..+..
T Consensus       386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            5556689999999999987744  47777777666666665555443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.43  E-value=1e-12  Score=138.58  Aligned_cols=180  Identities=12%  Similarity=0.017  Sum_probs=138.8

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCh--------hhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN--------VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIAS  101 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~--------~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~  101 (568)
                      .++.+++..++..........+++.|+++ .|.+.        .+.+...+...+...++.++.|+++||+ |||+++.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~  286 (418)
T TIGR00889       209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLL  286 (418)
T ss_pred             CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHH
Confidence            34555566666666555566777888764 55443        5668888889999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhh
Q 008355          102 FSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF  181 (568)
Q Consensus       102 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (568)
                      +.++..++..++.....               +..+.+.+++.+++.|++.+...+....++.|.+|+++      |+++
T Consensus       287 ~~~~~~v~~~l~~~~~~---------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~  345 (418)
T TIGR00889       287 SLVAWALRFGFFAYGDP---------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASA  345 (418)
T ss_pred             HHHHHHHHHHHHHHcCc---------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence            99888887766665311               00134567778899999999888888999999999988      9999


Q ss_pred             hhhHH-HHHHHhHHHhhhhhhheecc------ccchhhhhHHHHHHHHHHHHHHhcCc
Q 008355          182 FNWFY-LSINIGALVASSVLVWIQMN------VGWGWGFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       182 ~~~~~-~~~~ig~~~~p~~~~~i~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~  232 (568)
                      +++.+ ...++|..+||.++|++.+.      +||+..|.+.++..+++.+++....+
T Consensus       346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99987 67789999999999999887      46999998877666655555444444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.43  E-value=1.6e-12  Score=136.39  Aligned_cols=169  Identities=12%  Similarity=0.110  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 008355           38 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTA  117 (568)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~  117 (568)
                      ..+..+++.....+++.|+.+ .|.+  +.++..+.+.++..++.++.|++.||+ |||+.+..+.++..++..+.... 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-  299 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh-
Confidence            344556666777888888764 5653  456667778888889999999999999 99999988888777777666655 


Q ss_pred             hccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhh
Q 008355          118 SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVAS  197 (568)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p  197 (568)
                                        .+.+.+++.+++.|++.+...+.....+.|.+|+++      |+++.++++...++|..++|
T Consensus       300 ------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~  355 (399)
T PRK05122        300 ------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITG  355 (399)
T ss_pred             ------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                              345667778889999999888887788888888887      99999999999999999999


Q ss_pred             hhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceee
Q 008355          198 SVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYR  235 (568)
Q Consensus       198 ~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  235 (568)
                      .+.|++.+..||++.|++.++..+++++.....+++.+
T Consensus       356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        356 PLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999888777777666555544433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.43  E-value=2.4e-12  Score=133.50  Aligned_cols=171  Identities=12%  Similarity=0.015  Sum_probs=133.8

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      .+.+....++..........++|.|+++++|.+..+.++..+...+...++.+++|+++||+ |||+.+.++.+...+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  279 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY  279 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence            34444444454454555667789999999999999999888877777888899999999999 99999888776655554


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHH
Q 008355          111 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN  190 (568)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (568)
                      ......                   ++.+.+++.+++.|++.|...+....+..|..|+ +      +++++++++...+
T Consensus       280 ~~~~~~-------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~  333 (375)
T TIGR00899       280 TGLAAD-------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGR  333 (375)
T ss_pred             HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHH
Confidence            444433                   3456667778888888888888888888888775 4      6699999999999


Q ss_pred             HhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          191 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       191 ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      +|..++|.+.|.+.+..||+..|++.++..+++.+...
T Consensus       334 ~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       334 VGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988877766665544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.1e-12  Score=131.46  Aligned_cols=179  Identities=18%  Similarity=0.225  Sum_probs=146.0

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhcc-CchHHHHH-HHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYM-GRFWTIAS-FSII  105 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~-Grk~~~~~-~~~~  105 (568)
                      .|.+|.+++..++..+.-|++.-|.|.|+.|..|+|...+++..+.|-.++..++++.||+|||++ |||...-+ .++.
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999999999998 66654433 3333


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      ..++.+..-.+   |.              .|.....+..+..|+-.-+.+-.+.....|..|++.      -|++.|..
T Consensus       331 i~~~~~~~w~~---~~--------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~  387 (448)
T COG2271         331 ITASLVLYWLA---PN--------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFV  387 (448)
T ss_pred             HHHHHHHHHcC---CC--------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchh
Confidence            33444444443   22              456777777788888877777677777889999887      89999999


Q ss_pred             HHHHHH-hHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          186 YLSINI-GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       186 ~~~~~i-g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      .....+ |..++....+++.|.+||...|.+..+..+++.+++..
T Consensus       388 Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         388 GLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             hhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            998888 99999999999999999999998876666666554433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=9.1e-13  Score=137.13  Aligned_cols=167  Identities=20%  Similarity=0.121  Sum_probs=132.8

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      .++......++....++....++|.|+++++|.+..+.+.......+...++.++.|+++||+ |||+.+..+..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            466677777788888888889999999989999999999999999999999999999999999 9999887655544433


Q ss_pred             H-HHH-HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh-HH
Q 008355          110 M-TLL-TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-FY  186 (568)
Q Consensus       110 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~  186 (568)
                      . ... ...   ..              .+.+.+++..++.+++.+...+...+++.|.+|+++      |++++++ ++
T Consensus       299 ~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~  355 (394)
T TIGR00883       299 AVPLLMALL---DS--------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYN  355 (394)
T ss_pred             HHHHHHHHh---cC--------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhH
Confidence            3 222 121   00              235556677778888888888999999999999988      9999998 56


Q ss_pred             HHHHHhHHHhhhhhhheecccc-chhhhhHHHHHH
Q 008355          187 LSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAM  220 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~  220 (568)
                      ++..+|..++|.++|++.+..| |+..++..++..
T Consensus       356 ~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       356 LAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             hHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            6677899999999999999888 887766555433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.40  E-value=2.7e-12  Score=134.93  Aligned_cols=171  Identities=9%  Similarity=-0.060  Sum_probs=132.3

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT  111 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~  111 (568)
                      +.+....++....++....++|.|+++ .|++..+.+...+.+.++..++.++.|+++||+ |||+.+..+.+...++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            334444555556677778888988875 799999999999999999999999999999999 999998876666555555


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      .....                   .+.+.+++..++.|++.++..+...+++.|.+|+++      |+++.++.+....+
T Consensus       301 ~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~  355 (406)
T PRK11551        301 ALAAA-------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRL  355 (406)
T ss_pred             HHHhc-------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhH
Confidence            44443                   234555666677788777778888899999999988      99999999999999


Q ss_pred             hHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHh
Q 008355          192 GALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       192 g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      |..++|.+.|++.+..+ |...+++.....+++.++.+.
T Consensus       356 g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        356 GSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987654 556666655555555444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=6e-12  Score=128.62  Aligned_cols=172  Identities=22%  Similarity=0.261  Sum_probs=151.2

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchH-HHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFW-TIASFSIIYCL  108 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~-~~~~~~~~~~i  108 (568)
                      .++...+..++..........+++.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+..+.++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence            345555666777777778888899999887799999999999999999999999999999999 9999 99999888888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +.......                   .+.+.+++..++.|++.+...+....++.|.+|+++      |++.+++.+..
T Consensus       255 ~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  309 (352)
T cd06174         255 GLLLLALA-------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTF  309 (352)
T ss_pred             HHHHHHHh-------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHH
Confidence            88887766                   346778888999999999999999999999999887      99999999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      .++|..++|.+.+.+.+..+|+..|++.++..+++.+..
T Consensus       310 ~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         310 GSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998887776666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.38  E-value=5.6e-11  Score=120.14  Aligned_cols=182  Identities=10%  Similarity=-0.001  Sum_probs=121.7

Q ss_pred             ehhHhhHHHHHHHHH---HHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAY---YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~---~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      -|++++...+-++++   +.-......|..+.+| +...+-|...+|.+.+....+++-|+.||+ |-|....++....+
T Consensus        43 RW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~  120 (480)
T KOG2563|consen   43 RWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNG  120 (480)
T ss_pred             HhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHH
Confidence            355555555555544   1112334567777777 666778889999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhH--HHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTA--VTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      +|..+=.++ +.|.+.            +.++  ..+.+..+.+.++-.+....+-+.+-+|++++      |..+..+-
T Consensus       121 iGa~Ir~is-s~p~v~------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~  181 (480)
T KOG2563|consen  121 IGAWIRLIS-SLPFVP------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLG  181 (480)
T ss_pred             HHHHHhhhc-cCcccc------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHH
Confidence            998876655 223211            2233  67788888888888888777788889999999      88888775


Q ss_pred             HHHHHHhHHHhhhhhhheec------cccchhh--hhHHHHHHHHHHHHHHhcCce
Q 008355          186 YLSINIGALVASSVLVWIQM------NVGWGWG--FGIPAVAMAIAVVFFFSGSRL  233 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~------~~g~~~~--f~~~~~~~~~~~~~~~~~~~~  233 (568)
                      .+++.+|..+|-++...+..      ...|...  |+...+...+.+.+....+++
T Consensus       182 v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~  237 (480)
T KOG2563|consen  182 VMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTK  237 (480)
T ss_pred             HhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            55555555555444444433      2345542  443344444444444444443

>PRK03699 putative transporter; Provisional

Probab=99.38  E-value=4.9e-12  Score=132.50  Aligned_cols=170  Identities=16%  Similarity=0.121  Sum_probs=134.4

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.++.+.+..++....++++..++|.|+++.+|+|..+.+.+.+.+.++..++.++.|+++||+ |||+.+.....+.++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            3456666666777777888899999999999999999999999999999999999999999999 999998877766665


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      ...+....                   .+...+.+..++.|++.+...+...+...+..|. +      +++..+.....
T Consensus       284 ~~~~~~~~-------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~  337 (394)
T PRK03699        284 LMYLFVNT-------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A------SPKLVNFILTC  337 (394)
T ss_pred             HHHHHHHc-------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C------CHHHHHHHHHh
Confidence            55444433                   2344455566777888777777777777776653 3      55667888888


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~  225 (568)
                      .++|..++|.+.|++.+..|++..|+..++..+++.+
T Consensus       338 ~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        338 GTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            8999999999999999999999999887766655544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.37  E-value=7.8e-12  Score=130.43  Aligned_cols=170  Identities=11%  Similarity=-0.054  Sum_probs=145.8

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |.++..++..++...+++....+.++|+++ +|.+..++|...+...++..++.++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            456777777788888888888999999965 999999999999999999999999999999999 999999999999998


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH-H
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY-L  187 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~  187 (568)
                      .....+.+                   ++.+.+++..++.|+..|...++...++.+. |+++      |+++.++++ .
T Consensus       283 ~~~~~~~~-------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~  336 (382)
T TIGR00902       283 RWAIIGAI-------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNAL  336 (382)
T ss_pred             HHHHHHhH-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHH
Confidence            88887766                   5678888899999999999999999999987 8777      899999976 5


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      ...+|..++|.++|++.+.+|+ ..|++.+...++++++.
T Consensus       337 ~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       337 AMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            6789999999999999999986 56776666665555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.37  E-value=2.1e-12  Score=136.47  Aligned_cols=173  Identities=11%  Similarity=0.044  Sum_probs=134.6

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHh---CCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQL---NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      .++.+++..++....+.....+++.|+.+.+   +.+..+.|.+.++..+...++.+++|+++||+ |||+.+..+.++.
T Consensus       224 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~  302 (420)
T PRK09528        224 KFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIM  302 (420)
T ss_pred             CeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHH
Confidence            3444444444444444445556777776543   56667789999999999999999999999999 9999999988888


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh-H
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-F  185 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~  185 (568)
                      .++..+.+++                   .+.+.+++.+++.+++.+...+....++.|.+|++.      |++..+. +
T Consensus       303 ~~~~~l~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~  357 (420)
T PRK09528        303 AVRIIGSGFA-------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGF  357 (420)
T ss_pred             HHHHHHHHhc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehH
Confidence            8887777765                   456778888899998888777777788899999887      8887766 6


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      +...++|..++|.+.|++.+.+||+..|.+.++..++..++.+
T Consensus       358 ~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        358 QFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            7888999999999999999999999999987765554444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.37  E-value=5.2e-12  Score=132.67  Aligned_cols=169  Identities=12%  Similarity=0.087  Sum_probs=131.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCChh---hhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008355           35 LGNECCERLAYYGMSTNLVNYLQKQLNQGNV---TASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT  111 (568)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~  111 (568)
                      +...++.......+.++++.|+.+..+....   ..+.+.++..++..++.+..|+++||+ |||+.+..+.+...++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  303 (408)
T PRK09874        225 FVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLI  303 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHH
Confidence            3334444555555667788888765443221   245556666778888899999999999 999999988887776666


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      .....                   .+.+.+++.+++.|++.+...|...+++.+..|+++      |++.+++++...++
T Consensus       304 ~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~  358 (408)
T PRK09874        304 PMSFV-------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDI  358 (408)
T ss_pred             HHHHh-------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHH
Confidence            65554                   345667788889999999999998888888888887      99999999999999


Q ss_pred             hHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          192 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       192 g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      |..+||.++|++.+.+||++.|++.+++.+++.+..+.
T Consensus       359 g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        359 GNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988777776655544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.36  E-value=1.8e-11  Score=128.22  Aligned_cols=176  Identities=11%  Similarity=-0.007  Sum_probs=137.1

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      ..+.+.+..++....++++..++|.|+++ +|.+..+.|...+.+.++..++.++.|+++||+ |||+.+.++..+..++
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~  283 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG  283 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence            35666666777788888999999999986 899999999999999999999999999999999 9999998887777776


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCC-CCchhhhhhhhhhhhHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE-TDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~  188 (568)
                      ..+....   +               .+.....  .++.|++.+...|.......+.+++ ++      |++.+++.+..
T Consensus       284 ~~~~~~~---~---------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~  337 (393)
T PRK09705        284 FCGFIWL---P---------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQGI  337 (393)
T ss_pred             HHHHHHc---c---------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHHHH
Confidence            6554432   1               1112222  2456788888888777777777754 44      89999999999


Q ss_pred             HHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHhcCce
Q 008355          189 INIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRL  233 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~  233 (568)
                      .+++..++|.+.|++.+..| |+..|.+.++..++.++......++
T Consensus       338 ~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        338 GFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999876 7888887776666665555555544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.36  E-value=6.3e-12  Score=139.52  Aligned_cols=135  Identities=10%  Similarity=0.078  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 008355           69 NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLI  148 (568)
Q Consensus        69 ~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  148 (568)
                      ....+..++..++.+++|+++||+ |||+++.++.++.+++.+++++.                   .+...+++.+++.
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~-------------------~s~~~ll~~~~l~  658 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG-------------------NSESAMIALLCLF  658 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH-------------------ccHHHHHHHHHHH
Confidence            334556688889999999999999 99999999999988888887776                   2345566777788


Q ss_pred             HhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          149 ALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       149 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      +++.++.++...++++|++|++.      |++++|+.+....+|+++||.+++.+.+. +...+|++.++..+++.++..
T Consensus       659 g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       659 GGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL  731 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999999999998      99999999999999999999999987664 456677777766666555544


Q ss_pred             hc
Q 008355          229 SG  230 (568)
Q Consensus       229 ~~  230 (568)
                      +.
T Consensus       732 ~L  733 (742)
T TIGR01299       732 KL  733 (742)
T ss_pred             hC
Confidence            43

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.35  E-value=2.8e-12  Score=112.57  Aligned_cols=134  Identities=16%  Similarity=0.245  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 008355           70 NVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIA  149 (568)
Q Consensus        70 ~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  149 (568)
                      ..+.+.++..++.++.|+++||+ |||+.+..+.....++.+.....                   .+.+.+.+.+++.|
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g   62 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS-------------------SNITVLIIARFLQG   62 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh-------------------ccHHHHHHHHHHHH
Confidence            44566788889999999999999 99999999988888887777665                   35777888899999


Q ss_pred             hhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          150 LGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       150 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      ++.+...+...+++.|.+|+++      |++..++.+...++|..++|.+.+.+.+..+|++.|++.+...++..+....
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        63 FGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999988      9999999999999999999999999998889999998877666655554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.34  E-value=1.7e-11  Score=127.36  Aligned_cols=176  Identities=13%  Similarity=0.017  Sum_probs=130.8

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHH-HHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTI-ASFSIIYC  107 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~-~~~~~~~~  107 (568)
                      |.++..++..++..........+++.|+++.+|.+..+.+++.+...++..++.++.|+++||+ |||+.. ........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4567777888888888888999999999999999999999999999999999999999999999 888611 11111111


Q ss_pred             HH---HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008355          108 LG---MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW  184 (568)
Q Consensus       108 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (568)
                      ++   ..+.....  ..             ..+.........+.+.+.+ ..+...+++.|.+|+++      |++++++
T Consensus       294 ~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~  351 (399)
T TIGR00893       294 IAGLVLSLLMFAT--NY-------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGL  351 (399)
T ss_pred             HHHHHHHHHHHHh--cc-------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHH
Confidence            11   11111110  00             0123333333333444444 78889999999999988      9999999


Q ss_pred             HHHHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHH
Q 008355          185 FYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~  227 (568)
                      .+...++|..++|.+.+++.+..| |+..|++.++..+++.+..
T Consensus       352 ~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988 9999988777666655544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.33  E-value=3.3e-11  Score=126.07  Aligned_cols=173  Identities=10%  Similarity=-0.046  Sum_probs=134.1

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      ++...+..++....++....++++|+++..|.+..+.++..+.+.++..++.++.|+++||+ |||+.+ .+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            44445555556666666778888999888999999999999999999999999999999999 987654 4444444433


Q ss_pred             HHH-HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          111 TLL-TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       111 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      ... ...                   .+.+.+++..++.|++.+...+.....+.+..| ++      |++++++++...
T Consensus       285 ~~l~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~  338 (390)
T PRK03545        285 LLLLPAA-------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIF  338 (390)
T ss_pred             HHHHHHh-------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHH
Confidence            332 222                   345667777788888888777777777777765 45      899999999999


Q ss_pred             HHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          190 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      ++|..+||.++|++.+.+|++..|++.+...+++++......
T Consensus       339 ~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        339 NIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999998877777766655444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.33  E-value=5.4e-12  Score=133.23  Aligned_cols=160  Identities=9%  Similarity=-0.045  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 008355           45 YYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP  124 (568)
Q Consensus        45 ~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~  124 (568)
                      ..+...++|.|+++.+|.+..+.|++.+...++..++.++.|+++||. ++++.+..+.+..+++.++....        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            356667889999888999999999999999999999999999999997 88888888877777776666554        


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhee
Q 008355          125 SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ  204 (568)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~  204 (568)
                                 ++.....+..++.|++.+...+...+++.|.+|++.      |++++++++...++|..+||.+.|++.
T Consensus       310 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~  372 (417)
T PRK10489        310 -----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLG  372 (417)
T ss_pred             -----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence                       345556677778888888777777888999999887      999999999999999999999999999


Q ss_pred             ccccchhhhhHHHHHHHHHHHHHHhc
Q 008355          205 MNVGWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       205 ~~~g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      +.+|++..+++.++..++..++....
T Consensus       373 ~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        373 AMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            99998888877665544444333333

>PRK12382 putative transporter; Provisional

Probab=99.32  E-value=1.6e-11  Score=128.43  Aligned_cols=163  Identities=13%  Similarity=0.157  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 008355           38 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTA  117 (568)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~  117 (568)
                      .++....+..+..+++.|+++ .|.+  +.++....+.++..++.++.|++.||+ |||+.+..+..+..++..+.... 
T Consensus       225 ~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-  299 (392)
T PRK12382        225 LALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA-  299 (392)
T ss_pred             HHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc-
Confidence            344455666677788888865 5654  356666677778889999999999999 99999998888888877766654 


Q ss_pred             hccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhh
Q 008355          118 SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVAS  197 (568)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p  197 (568)
                                        .+.+..++..++.|++.+...+.....+.|.+|+++      |++++++++...++|..++|
T Consensus       300 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~  355 (392)
T PRK12382        300 ------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSG  355 (392)
T ss_pred             ------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                              345667778888999999888888888899999888      99999999999999999999


Q ss_pred             hhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          198 SVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       198 ~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      .+.+++.+.+||+..|.+.+...+++.+..+.
T Consensus       356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        356 PLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999888777666655543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.31  E-value=1.5e-11  Score=130.54  Aligned_cols=153  Identities=12%  Similarity=0.105  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH-HH
Q 008355           35 LGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT-LL  113 (568)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~-~~  113 (568)
                      +...++....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+.+..+.+...+... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3444456677888889999999988999999999888888899999999999999999 999988876554332221 11


Q ss_pred             HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH-HHHHHHh
Q 008355          114 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF-YLSINIG  192 (568)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig  192 (568)
                      ....  ..              .+.....+..++.+++.+...+....+..|.+|++.      |++++++. +++..++
T Consensus       323 ~~~~--~~--------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~  380 (434)
T PRK15075        323 SWLV--AA--------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIF  380 (434)
T ss_pred             HHHH--cC--------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHH
Confidence            1110  00              123233333445556666666666788899999998      99999985 4444556


Q ss_pred             HHHhhhhhhheeccccch
Q 008355          193 ALVASSVLVWIQMNVGWG  210 (568)
Q Consensus       193 ~~~~p~~~~~i~~~~g~~  210 (568)
                      +.++|.+.+++.+..|++
T Consensus       381 g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        381 GGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             hhhHHHHHHHHHHhcCCc
Confidence            788999999999988864

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.30  E-value=1.9e-11  Score=130.56  Aligned_cols=176  Identities=15%  Similarity=0.130  Sum_probs=124.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCc--hHHH-HHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR--FWTI-ASFSII  105 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Gr--k~~~-~~~~~~  105 (568)
                      +.+|..++..++....++++..++|.|+++..|++..+++.....+.++..++.+++|+++||+ ++  |+.. .....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            4467777777788888889999999999998999999999988888999999999999999998 53  3322 222222


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      ..++...+.+.   +.              .+....++..++.|.+..........+..|.+|+++      |++++|+.
T Consensus       332 ~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  388 (452)
T PRK11273        332 VTIATIVYWLN---PA--------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  388 (452)
T ss_pred             HHHHHHHHHHh---cc--------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHH
Confidence            33333222221   11              223333444444444333222233345678999988      99999999


Q ss_pred             HHHHHHhHHH-hhhhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          186 YLSINIGALV-ASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       186 ~~~~~ig~~~-~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      +...++|+.+ +|.+.|++.+.+||+..|++.++..+++++...
T Consensus       389 ~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        389 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            8888888654 799999999999999999887766666655444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.30  E-value=1.4e-11  Score=129.00  Aligned_cols=156  Identities=17%  Similarity=0.138  Sum_probs=123.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHH-
Q 008355           34 ILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL-  112 (568)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~-  112 (568)
                      ++....+.+...+....++|.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.+...+.... 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  321 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV  321 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence            33444444555566777899999999999999999999999999999999999999999 9999988877654332222 


Q ss_pred             HHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHh
Q 008355          113 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIG  192 (568)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  192 (568)
                      ....                   .+.+.+.+..++.++..++..+..++++.|.+|+++      |++++|+.+...++|
T Consensus       322 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g  376 (405)
T TIGR00891       322 FAIG-------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLG  376 (405)
T ss_pred             HHhC-------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHH
Confidence            2211                   234455556566777777777888899999999988      999999999999999


Q ss_pred             HHHhhhhhhheecccc-chhhhhH
Q 008355          193 ALVASSVLVWIQMNVG-WGWGFGI  215 (568)
Q Consensus       193 ~~~~p~~~~~i~~~~g-~~~~f~~  215 (568)
                      ..++|.+.|++.+..| |+..+..
T Consensus       377 ~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       377 GALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999988 8766554

>TIGR00897 2A0118 polyol permease family

Probab=99.30  E-value=5.1e-11  Score=125.16  Aligned_cols=177  Identities=13%  Similarity=0.031  Sum_probs=131.9

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHH-HHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA-SFSIIYC  107 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~-~~~~~~~  107 (568)
                      |.++...+..++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            44667777778888888999999999885 5899999999999999999999999999999999 9888764 3333333


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++...+.......              ..+.+..++..++.|++.+...+ ....+.|.. +++      |++++|+.+.
T Consensus       300 ~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~------~g~~~g~~~~  357 (402)
T TIGR00897       300 IFTLALYYIPQHF--------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKH------KGAAMSVLNL  357 (402)
T ss_pred             HHHHHHHHHHHcc--------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cch------hHHHHHHHHH
Confidence            3333332221100              02355566667777887776544 345556654 446      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      ..++|..++|.+++.+.+.+||...|++.++..+++.++..+
T Consensus       358 ~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       358 SAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888776666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.30  E-value=2.1e-11  Score=129.44  Aligned_cols=177  Identities=15%  Similarity=0.079  Sum_probs=121.8

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccC--chHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG--RFWTIASFSIIY  106 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~G--rk~~~~~~~~~~  106 (568)
                      +.++.+.+..++....++++..++|.|+.+++|++..+.+...+.+.++..++.+++|+++||+.+  |+.......+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            345666666777777778888899999988899999999999999999999999999999999822  223222221111


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      .+....+...   +.              .+.....+..+..|++...........++|.+|+++      |+++.|+.+
T Consensus       323 ~~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  379 (434)
T PRK11663        323 LLSVGSLWLM---PF--------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVG  379 (434)
T ss_pred             HHHHHHHHHc---cc--------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHH
Confidence            1111111111   11              122222333333443322222233456688888877      999999999


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      ...++|..++|.+.|++.+..||+..|+..+++.+++.+...
T Consensus       380 ~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        380 LFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888776665554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.30  E-value=5.6e-10  Score=112.45  Aligned_cols=129  Identities=12%  Similarity=-0.016  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhCC---Ch----hhhhhhHHHHHHHHHhhhhhHHHHhhhccCchH-HHHHHHHHHHHHHHHHHHhhhc
Q 008355           48 MSTNLVNYLQKQLNQ---GN----VTASNNVTNWSGTCYITPLIGAFLADSYMGRFW-TIASFSIIYCLGMTLLTLTASV  119 (568)
Q Consensus        48 ~~~~l~~yl~~~lg~---s~----~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~-~~~~~~~~~~i~~~~~~~~~~~  119 (568)
                      .+..+|+|+++..+.   ++    ...+...++..+..++..|+-|.++|+. |+|| .+-+...+..+..+.+.++   
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i---  109 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI---  109 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh---
Confidence            346688899887655   33    3356667778888889999999999999 7555 5555555556666666665   


Q ss_pred             cCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhh
Q 008355          120 SGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSV  199 (568)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~  199 (568)
                      |.             ..+++...+..++..++.........+++.|..++++      -++..+.-+....+|+.+.-++
T Consensus       110 ~~-------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~li~  170 (438)
T COG2270         110 PP-------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILLIF  170 (438)
T ss_pred             CC-------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHHHH
Confidence            21             1345666666777888888888889999999999887      4555555444555665554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.29  E-value=5e-11  Score=124.27  Aligned_cols=159  Identities=14%  Similarity=0.152  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 008355           38 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTA  117 (568)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~  117 (568)
                      .+...+.+.....++|.|+++ .|.+..+.+...+...++..+++++.|+++||+ |+|+++..+..+..++.+... . 
T Consensus       209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-  284 (381)
T PRK03633        209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-
Confidence            333334444555778888875 699999999999999999999999999999999 999999888777766654432 1 


Q ss_pred             hccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhh
Q 008355          118 SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVAS  197 (568)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p  197 (568)
                                          .......+++.|++.+...|...+.+.|..|+++      ++...+.++...++|..+||
T Consensus       285 --------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp  338 (381)
T PRK03633        285 --------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGP  338 (381)
T ss_pred             --------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                                1123345566777777778888888899988876      77778888888999999999


Q ss_pred             hhhhheeccccchhhhhHHHHHHHHHHHH
Q 008355          198 SVLVWIQMNVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       198 ~~~~~i~~~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      .++|++.+++||++.|.+.+...++..+.
T Consensus       339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        339 SFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            99999999999999998877666555433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.29  E-value=4.1e-11  Score=127.17  Aligned_cols=168  Identities=15%  Similarity=0.069  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHH-h
Q 008355           38 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL-T  116 (568)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~-~  116 (568)
                      .++....+|++..|+|.|+++++|.+..+.+...+...+...++.++.|+++||+ |||+.+.++.++.++....... .
T Consensus       252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~  330 (432)
T PRK10406        252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL  330 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344778899999999999999999998988888888888888899999999999 9999887766544333322211 1


Q ss_pred             hhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHH-HhHHH
Q 008355          117 ASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN-IGALV  195 (568)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-ig~~~  195 (568)
                      ..  .              .+....+....+..++.+...+....+.+|.+|++.      |++++|+.+...+ +++..
T Consensus       331 ~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~  388 (432)
T PRK10406        331 QN--V--------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGS  388 (432)
T ss_pred             Hc--C--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhH
Confidence            00  0              112222211122223333333456678899999999      9999999665544 44555


Q ss_pred             hhhhhhheecccc-chhhhhHHHHHHHHHHHHHHh
Q 008355          196 ASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       196 ~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      .|.+.+.+ +..| |...++..++..+++.+..++
T Consensus       389 ~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        389 AEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            88877866 4445 555566555555555544444

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.27  E-value=4.3e-11  Score=128.88  Aligned_cols=179  Identities=12%  Similarity=0.061  Sum_probs=131.5

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHH-HHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVT-NWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~-~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      .+.+.+..++.....+....+.++|+.+++|++..+.+++.. ...++..++.+++|+++||+ |+|+.+.++.+..++.
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            344444455666666666778888988889999999999875 55678899999999999999 9999887766655554


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      .+........+               .+...+.+..++..++.|...+...++..+..+++.      +++.+++.+...
T Consensus       303 ~l~~~~l~~~~---------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~  361 (491)
T PRK11010        303 NAGYWLLSITD---------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALS  361 (491)
T ss_pred             HHHHHHHHhcc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHH
Confidence            43322211100               233334444555554555555666788888888887      888999999999


Q ss_pred             HHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          190 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      ++|..+++.+.|++.+.+||+..|.+.+++.++++++....+
T Consensus       362 ~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        362 AVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998989999999999999999988887777766665544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.27  E-value=4.2e-11  Score=120.42  Aligned_cols=185  Identities=15%  Similarity=0.053  Sum_probs=147.0

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|+.|.+.+..+..-.++-++..++|.|+++++|.+..++|.....+.+...+.++.+|+++||+ |.+|+.++....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            56689999999999999999999999999999999999999999999999999999999999999 99898888888888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++..+.....+..            ....+...++...+..++..|.-...+..++...+|++       -+...|+...
T Consensus       296 ~~~~~l~~~~~~~------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga  356 (417)
T COG2223         296 LAAALLSLFLTGF------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGA  356 (417)
T ss_pred             HHHHHHHcccccc------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHH
Confidence            8777776551100            01123444444444445555555556778888888763       6888999999


Q ss_pred             HHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHhcCc
Q 008355          188 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~  232 (568)
                      ..++|+..-|...+...+..| +...|++...+.+++.++.+....
T Consensus       357 ~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         357 IGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             hccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888887 889998888777777776555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.27  E-value=7.7e-11  Score=125.19  Aligned_cols=185  Identities=15%  Similarity=0.086  Sum_probs=154.6

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCch--HHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRF--WTIASFSI  104 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk--~~~~~~~~  104 (568)
                      +.|+++..++..++.+-+..++......|.++++|++..+...+.....+.+.++.++.|++.||+ |.|  ++++++.+
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            456788888888999999999999999999999999999999999999999999999999999999 999  88888877


Q ss_pred             HHHHHHHHHHH--hhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhh
Q 008355          105 IYCLGMTLLTL--TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF  182 (568)
Q Consensus       105 ~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (568)
                      ++.+..+...+  .....             ...+.+.+++.-++.|+..|+.++..-++.+++.|+++      .+..|
T Consensus       358 ~~~~i~~~g~~G~~~~~~-------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efF  418 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFF-------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFF  418 (477)
T ss_pred             HHHHHHHHHHHHhhhccc-------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHH
Confidence            66443332222  21100             11467778888889999999999999999999999998      89999


Q ss_pred             hhHHHHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHhcC
Q 008355          183 NWFYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       183 ~~~~~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      |++.+.....+.+||.+.+.+.+..| -|+.++...++.+++++++....
T Consensus       419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999998887 88888877777777776665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.26  E-value=5.3e-11  Score=128.60  Aligned_cols=148  Identities=18%  Similarity=0.154  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 008355           47 GMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSC  126 (568)
Q Consensus        47 ~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  126 (568)
                      ....++|.|+++++|++..+.+++.+...++..++.+++|+++||+ |||+.+.++.++..++.+.....   +.     
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~~-----  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI---GG-----  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc---cc-----
Confidence            4567899999889999999999999999999999999999999999 99999888766655554433322   11     


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc
Q 008355          127 DKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN  206 (568)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~  206 (568)
                               .+.+.+.+..++.+....+..+..+.++.|.+|+++      |++++++++...++|..+||.++|.+.+.
T Consensus       364 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        364 ---------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             ---------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence                     233334444444433333445677788899999888      99999999999999999999999999999


Q ss_pred             ccchhhhhHHHH
Q 008355          207 VGWGWGFGIPAV  218 (568)
Q Consensus       207 ~g~~~~f~~~~~  218 (568)
                      +||+..+.+.+.
T Consensus       429 ~g~~~~~~~~~~  440 (496)
T PRK03893        429 LDLGTALASLSF  440 (496)
T ss_pred             CChHHHHHHHHH
Confidence            999988765543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.24  E-value=7.8e-11  Score=125.78  Aligned_cols=171  Identities=11%  Similarity=0.013  Sum_probs=136.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc-cCchHHHHHHH--HH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY-MGRFWTIASFS--II  105 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~-~Grk~~~~~~~--~~  105 (568)
                      +.++..+...++..++++....+++.|+++ +|++..+++++.++..++..++.+++|+++||. .++|+...++.  +.
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            446666677777888888888899999864 899999999999999999999999999999984 14444443333  22


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      ..++.+++...                   .+.+.+++.+++.|++.+...+...+++.|.+|+++      +++.++++
T Consensus       320 ~~l~~ll~~~~-------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~  374 (455)
T TIGR00892       320 NGLTHLLCALA-------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLV  374 (455)
T ss_pred             HHHHHHHHHHh-------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHH
Confidence            23333333333                   346677888999999999999999999999999888      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheeccc-cchhhhhHHHHHHHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQMNV-GWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~-g~~~~f~~~~~~~~~~~~  225 (568)
                      +...++|..+||.++|++.+.. +|++.|++.++..+++.+
T Consensus       375 ~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       375 TIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999999999999999999887 499999988776655544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.23  E-value=8.2e-11  Score=125.06  Aligned_cols=179  Identities=14%  Similarity=0.088  Sum_probs=123.7

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.++...+..++.....+++..++|.|+++..|++..+.++....+.+...++.+++|+++||+ |+++....+.....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            3456666677777778889999999999998999999999999999999999999999999999 754433333322221


Q ss_pred             HH---HHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          109 GM---TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       109 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      ..   ..+...   +.              .+.+......++.|++..+..........|.+|+++      |+++.|+.
T Consensus       330 ~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  386 (438)
T TIGR00712       330 VTIAVIVYWMN---PA--------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  386 (438)
T ss_pred             HHHHHHHHHhc---CC--------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhh
Confidence            11   111111   11              123333333444454433222222345678899888      99999999


Q ss_pred             HHHHHHhH-HHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          186 YLSINIGA-LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       186 ~~~~~ig~-~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      +...++|+ .++|.+.|.+.+..||...|++.+...+++.+..+...
T Consensus       387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            88888875 68999999999999999998877766655555544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.22  E-value=1.5e-10  Score=123.68  Aligned_cols=171  Identities=10%  Similarity=0.023  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 008355           46 YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS  125 (568)
Q Consensus        46 ~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  125 (568)
                      ..+..+.+ ++.+++|++..+.++......++..++.+++|+++||+ |||+.+.++.++.+++..++++.......   
T Consensus       301 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  375 (481)
T TIGR00879       301 NAIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVT---  375 (481)
T ss_pred             eehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccC---
Confidence            33444444 44557899998888888889999999999999999999 99999999888777777666532110100   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheec
Q 008355          126 CDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM  205 (568)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~  205 (568)
                          . ++...+...+....++.+.......+....++.|.+|+++      |+++.++.+...++|+.++|.+.+++.+
T Consensus       376 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       376 ----G-SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             ----C-cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0 0000022222222223222223334666777899999988      9999999999999999999999999998


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHhcCc
Q 008355          206 NVGWGWGFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       206 ~~g~~~~f~~~~~~~~~~~~~~~~~~~  232 (568)
                      ..+|++.|++.+++.+++.++.....+
T Consensus       445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       445 SIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             hcCccceehhHHHHHHHHHHHHheecc
Confidence            889999998887776666655544433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.21  E-value=2.7e-10  Score=119.83  Aligned_cols=172  Identities=12%  Similarity=-0.129  Sum_probs=128.5

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      .++...+...+....++......|.|+.+++|++..+.++......++..++.++.|+++||+ |+|+.+.++.+..+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            345555555555666666667788898889999999999888777888889999999999999 9999999988887777


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      ..+.........              .+...++++.++.|+|.+...+......... ++++      |++..+.+++..
T Consensus       295 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~~  353 (406)
T PRK15402        295 LLLAALATVISS--------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGMLS  353 (406)
T ss_pred             HHHHHHHHHccc--------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHHH
Confidence            777665421111              2355567778888999888776665544333 3355      999999999999


Q ss_pred             HHhHHHhhhhhhheeccccchhhhhHHHHHHHHH
Q 008355          190 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIA  223 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~  223 (568)
                      .+|..+|+.+.+++.+..++....+..++..++.
T Consensus       354 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        354 MLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            9999999999999988877665555544433333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.21  E-value=4.1e-09  Score=111.37  Aligned_cols=163  Identities=14%  Similarity=0.129  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc--cC--chHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 008355           50 TNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY--MG--RFWTIASFSIIYCLGMTLLTLTASVSGLKPS  125 (568)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~--~G--rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  125 (568)
                      .....|+++++|+++.+.....+...+- -...++.|.++|-+  +|  ||+-++++.++.+++...++..   |.    
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~----   81 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PA----   81 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---cc----
Confidence            3445688999999999877655444333 36788899999998  33  5555566666665555555543   21    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheec
Q 008355          126 CDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM  205 (568)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~  205 (568)
                              ...+.....+..++..+|.+....+.-+++.|....+...    |+...+..+....+|.+++..++|.+.+
T Consensus        82 --------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~  149 (433)
T PF03092_consen   82 --------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLD  149 (433)
T ss_pred             --------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                    1123444555667778888888889999999988655422    7888899999999999999999999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHhcCc
Q 008355          206 NVGWGWGFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       206 ~~g~~~~f~~~~~~~~~~~~~~~~~~~  232 (568)
                      ..+++..|.+.+++..+..+......+
T Consensus       150 ~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  150 SFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             cCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            999999999887766666554444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.19  E-value=4.3e-10  Score=114.29  Aligned_cols=177  Identities=15%  Similarity=0.129  Sum_probs=145.5

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.++..+...++...+.|...+++.+++++..|+|...+++++..|.++..++.+++|+++||  +.|+.+....++.++
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            457888888999999999999999999999999999999999999999999999999999999  788888887777777


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      ....+.+..                  .+.+...+..++.|++........+.-+++ ..++.      +..+.+++...
T Consensus       289 ~~l~l~~~~------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~a~sl~~aa  343 (394)
T COG2814         289 ALLALTFTG------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADLAGSLNVAA  343 (394)
T ss_pred             HHHHHHHhc------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHHHHHHHHHH
Confidence            766666541                  235556666666777777655555555555 33445      88999999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCc
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  232 (568)
                      .|+|..+|..++|.+.+++|+....+..++..++++++.+...+
T Consensus       344 ~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         344 FNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999888888777665444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.19  E-value=3.1e-10  Score=118.33  Aligned_cols=168  Identities=10%  Similarity=-0.095  Sum_probs=132.5

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |.++..++..++....+.....+++.|++ +.|.+..+.|...+...++..+..++.|++.||+ |+|+.+..+.+..++
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            44566666677777777777788899986 5899999999999988888889999999999999 999999988888888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH-H
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY-L  187 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~  187 (568)
                      +..+.+..                   ++.+.+++..++.|++.+...+....+..+. ++++      +++..+.+. .
T Consensus       283 ~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~  336 (382)
T PRK11128        283 RWGLMGST-------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSAL  336 (382)
T ss_pred             HHHHHHhh-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHH
Confidence            77666655                   4577788889999999988888888877775 4444      677888765 5


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHH
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~  225 (568)
                      ...+|..+||.++|.+.+.+|+ ..|+..++..+++++
T Consensus       337 ~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        337 AMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            6678889999999999999887 456655555444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.18  E-value=1e-10  Score=121.05  Aligned_cols=162  Identities=13%  Similarity=0.160  Sum_probs=120.4

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH--H
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII--Y  106 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~--~  106 (568)
                      +.++.+.+..++.......+..+++.|+++.+|.+..+.+...+.+.++..++.++.|+++||+.+||+........  .
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45667777777788888888899999999999999999999999999999999999999999862444433222111  1


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      .++.......   +.              .+.....+..++.|+..++..+....+..|.+|+++      |+++.++++
T Consensus       296 ~~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  352 (379)
T TIGR00881       296 IVSLLVYWLN---PA--------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVG  352 (379)
T ss_pred             HHHHHHHhcC---cc--------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHH
Confidence            1111111111   11              234445555566666555555666778899999988      999999999


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhh
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGF  213 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f  213 (568)
                      ...++|..++|.+.|.+.+.+||++.|
T Consensus       353 ~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       353 FFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            999999999999999999999998765

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.17  E-value=4.5e-10  Score=120.60  Aligned_cols=173  Identities=9%  Similarity=-0.008  Sum_probs=115.7

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchH-------HHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFW-------TIASFS  103 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~-------~~~~~~  103 (568)
                      .|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+       ...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            45555555555556667778899999988999999999999999999999999999999999 8752       222222


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      ++..+..++....                   .+.....+..++.+++.+...+...+++.+..| ++      |+...+
T Consensus       333 ~l~~i~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g  386 (476)
T PLN00028        333 TLGGVFCIWLGRA-------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISG  386 (476)
T ss_pred             HHHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhh
Confidence            2222222222222                   223334444455555554444455555666544 45      899999


Q ss_pred             hHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      +.+.+.++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus       387 ~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        387 LTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            988888888888887654 23345699999888877777766655544

>PRK10504 putative transporter; Provisional

Probab=99.17  E-value=3.7e-10  Score=121.21  Aligned_cols=159  Identities=11%  Similarity=0.003  Sum_probs=126.8

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|.....+...++..+.+.....+.|.|++..+|.+..+.++......++..++.++.|+++||+ |||+++..+.++.+
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~  338 (471)
T PRK10504        260 TRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLA  338 (471)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHH
Confidence            34556666777777777666666788888888999999999998888888888889999999999 99999998888777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++..++.....  .              .+.+.+.+..++.|++.+...+....++.+.+|+++      ++.++++.+.
T Consensus       339 ~~~~~~~~~~~--~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  396 (471)
T PRK10504        339 LVSLLFMLVAL--L--------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSM  396 (471)
T ss_pred             HHHHHHHhccc--c--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHH
Confidence            77666554310  0              223444455667788888888888899999999887      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccc
Q 008355          188 SINIGALVASSVLVWIQMNVGW  209 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~  209 (568)
                      ..++|..+|+.+++.+.+..|+
T Consensus       397 ~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        397 IMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999988776655

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.16  E-value=5.4e-10  Score=105.81  Aligned_cols=166  Identities=14%  Similarity=0.088  Sum_probs=132.9

Q ss_pred             cCCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           24 KTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      .++....+|++....++...+.+=+...-+.+.++.+|+|+.+++.+.+.......+.+++.|.++||+ |++-....+.
T Consensus       259 v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a  337 (459)
T KOG4686|consen  259 VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASA  337 (459)
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHH
Confidence            444566788888888888777776777778999999999999999999999999999999999999999 9987666554


Q ss_pred             H-HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhh
Q 008355          104 I-IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF  182 (568)
Q Consensus       104 ~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (568)
                      . ...++-..+.++                     .+.-+.+..+.|+.......+.++.++-..|+++      .|+++
T Consensus       338 ~~~tl~~H~~l~Ft---------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTay  390 (459)
T KOG4686|consen  338 CILTLLGHSGLFFT---------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAY  390 (459)
T ss_pred             HHHHHHHhhhHHhh---------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchH
Confidence            4 344444555554                     3345666777888887777677888888999888      99999


Q ss_pred             hhHHHHHHHhHHHhhhhhhheecccc---chhhhhHHH
Q 008355          183 NWFYLSINIGALVASSVLVWIQMNVG---WGWGFGIPA  217 (568)
Q Consensus       183 ~~~~~~~~ig~~~~p~~~~~i~~~~g---~~~~f~~~~  217 (568)
                      +..+...|+|-.+-|++.|.+.+.-|   |--.|++..
T Consensus       391 gf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  391 GFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            99999999999999999999998654   444454443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.15  E-value=2.4e-09  Score=108.11  Aligned_cols=84  Identities=13%  Similarity=0.017  Sum_probs=70.7

Q ss_pred             chhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc---------
Q 008355          136 AQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN---------  206 (568)
Q Consensus       136 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~---------  206 (568)
                      .++..+.++.++.|.|.+...++..+++++..++++      +.+.+++.+....+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            457889999999999999999999999999999888      89999999999999999999999876632         


Q ss_pred             -------ccchhhhhHHHHHHHHHHH
Q 008355          207 -------VGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       207 -------~g~~~~f~~~~~~~~~~~~  225 (568)
                             .+|+++|++.+...++..+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   4689999866554443333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.14  E-value=4.6e-10  Score=117.95  Aligned_cols=177  Identities=10%  Similarity=0.093  Sum_probs=116.5

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHH-HHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWS-GTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~-~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      |..+.+++..++.+........+.+.|+.+++|++..+.+++.+... ++..++.+++|++.||+ |||+.+..+.+...
T Consensus       209 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~  287 (402)
T PRK11902        209 RGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQA  287 (402)
T ss_pred             cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence            33444444445544443333345556777889999999999886654 46788999999999999 99998887776655


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHH----HHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL----YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      +...........+               .+.+.+++..    +..|++.+...+....++.+.+|.++          .+
T Consensus       288 l~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~  342 (402)
T PRK11902        288 VSNLGYWVLAVTP---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----------YA  342 (402)
T ss_pred             HHHHHHHHHHhcC---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----------HH
Confidence            5544332211101               1234444443    34456666667777777777776544          34


Q ss_pred             hHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      ++....++|..+++.++|.+.+.+||+..|.+.+++.++++++....+
T Consensus       343 ~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        343 LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555677776677899999999999999998877777666554433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.13  E-value=7.2e-09  Score=109.10  Aligned_cols=362  Identities=14%  Similarity=0.088  Sum_probs=207.3

Q ss_pred             hhHhhHHHHHHHHHHHHH---HHHHHHHHHHhCCChh-hhhhhHHHH----HHHHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMS---TNLVNYLQKQLNQGNV-TASNNVTNW----SGTCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~-~~g~~~~~~----~~~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      +.+....++..++++...   .+...+.....+.+.. +.+......    .+...+..+..|.++||+ |||..+...+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~   99 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPL   99 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHH
Confidence            444444555555554444   4444455444443322 234444444    567778899999999999 9999999998


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHH--hhcccCcccccccccccCCCCCchhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIA--LGTGGIKPCVSSFGADQFDETDDGEREKKSSF  181 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (568)
                      ....+..+...+.                     .+.+++   +.+  -+.+.+.+...++++|....++      |...
T Consensus       100 ~~~~l~~~~~~~~---------------------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~  149 (463)
T KOG2816|consen  100 FGTILPALCLLFQ---------------------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSS  149 (463)
T ss_pred             HHHHHhHHHHHHH---------------------HHHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHH
Confidence            8888877777665                     122222   332  3334556677888999998887      9999


Q ss_pred             hhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCC-hhHHHHHHHHHHHhhccc
Q 008355          182 FNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGS-PLTRIMQVIVASFRKSNV  260 (568)
Q Consensus       182 ~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  260 (568)
                      +++.+.....+..++|.+++.+.+..|.-.+|+++++..++..+-.....++...++.... +..               
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~---------------  214 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR---------------  214 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc---------------
Confidence            9999999999999999999999999999999999988887777665555554332221110 000               


Q ss_pred             ccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHH
Q 008355          261 VVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVF  340 (568)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (568)
                                             .+...+...+.              ..++++...+. -.++..+...+...+....-
T Consensus       215 -----------------------~~~~~~~~~~~--------------~~~~~~~~~~~-~~~r~~l~l~l~~~~~~~~~  256 (463)
T KOG2816|consen  215 -----------------------ELTPGSLDSSH--------------VADAFQSLTKV-GPDRLLLLLLLVAFLSSLPE  256 (463)
T ss_pred             -----------------------ccCCCcccchh--------------hhhhhhhhccc-CCCccchHHHHHHHHHHHHH
Confidence                                   00000000000              00011000000 00011111111111111111


Q ss_pred             HhhhccccceeEeecccccCCCCCCccc-CchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHH
Q 008355          341 ATVYSQMSTMFVLQGNTMDQHMGPNFKI-PSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS  419 (568)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~  419 (568)
                      +......-.++....      .  +++. ..+.+.........+..    .+..|...+.      .+..+.+.+|+..-
T Consensus       257 ~~~~~~~~~~yl~~~------f--~w~~~~~s~~~~~~~~~~~i~~----l~~~~~l~~~------l~~~~~i~lGl~~~  318 (463)
T KOG2816|consen  257 AGGASDVLLLYLKAK------F--GWNKKEFSDLLSLVSILGIISQ----LLLLPLLSSI------LGEKRLISLGLLSE  318 (463)
T ss_pred             hcCceeEEEEEEeee------c--CcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH------HhhhhHhhHHHHHH
Confidence            111110111222211      1  1111 11112222222222222    2222233332      22223678888888


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHH
Q 008355          420 IFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAV  499 (568)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l  499 (568)
                      .+..++.++..                    ..| .+..............|+..+++....+++.+|+++++......+
T Consensus       319 ~~~~~~~af~~--------------------~~w-~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l  377 (463)
T KOG2816|consen  319 FLQLLLFAFAT--------------------ETW-MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGL  377 (463)
T ss_pred             HHHHHHHHHhc--------------------cch-hhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHH
Confidence            88888888664                    333 333345556666777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhc
Q 008355          500 GNYLSTLLVTIVTKVTT  516 (568)
Q Consensus       500 g~~lg~~l~~~i~~~~~  516 (568)
                      ++.++|.+-+.+...+.
T Consensus       378 ~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  378 SGVVSPALYGNIFALTL  394 (463)
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            99999999887765543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.13  E-value=7.6e-10  Score=111.79  Aligned_cols=163  Identities=13%  Similarity=0.043  Sum_probs=125.2

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHH--hCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQ--LNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      .+..++.++..++....--++..|++.|+.+.  +|++..+.+...+.+..+..++++.+++++||+ |+||.+.++.++
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l  217 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL  217 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence            34455555656665556667788999999854  799999999999999999999999999999999 999999888777


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++..+....                   .+.. ...+.++.|++.+..+|...+...+.+|++.       +++.++.
T Consensus       218 ~~~~~~l~~~~-------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~  270 (310)
T TIGR01272       218 AVLLSIGAALT-------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL  270 (310)
T ss_pred             HHHHHHHHHHc-------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH
Confidence            77766544433                   1122 2234557899999999999999988887643       3444554


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVA  219 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~  219 (568)
                       ....+|+.+.|.+.|.+.+..|.+.+|++..++
T Consensus       271 -~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       271 -CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             -HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence             456799999999999999999988888765543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.12  E-value=4.4e-10  Score=117.81  Aligned_cols=172  Identities=9%  Similarity=0.063  Sum_probs=130.1

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHh---CCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQL---NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      |.++..++..++....+.....+.+.|+++.+   +.+....|.+.+...+...++.+..|++.||+ |||+.+.++.++
T Consensus       215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l  293 (396)
T TIGR00882       215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI  293 (396)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence            34455555555555555556667888887765   45556778888888888899999999999999 999999998888


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh-
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-  184 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-  184 (568)
                      .+++..+....                   .+.+.+++.+++.|++.+........+..+..+++.      ++++.+. 
T Consensus       294 ~~l~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~  348 (396)
T TIGR00882       294 MSVRIIGSSFA-------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIG  348 (396)
T ss_pred             HHHHHHHHHhc-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHH
Confidence            88777665554                   346667778888888876555555556666677666      7777766 


Q ss_pred             HHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHH
Q 008355          185 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      ++....+|..++|.++|++.+..||+.+|.+.++..++..+.
T Consensus       349 ~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       349 FQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999999877666555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.12  E-value=6.2e-10  Score=117.34  Aligned_cols=164  Identities=10%  Similarity=0.015  Sum_probs=116.0

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHH-HhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHH-HHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQK-QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTI-ASFSIIYC  107 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~-~~~~~~~~  107 (568)
                      .++...+..++....++++..++|.|+++ ..|.+..+++.......++..++.+++|+++||+ +||+.. ....+..+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            45667777788888899999999999987 3477888889999999999999999999999999 877643 33333333


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+ ....   .               .+....+.+..+.++|.....+.......|.+|+++      |++++|+.+.
T Consensus       322 ~~~~-~~~~---~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~  376 (412)
T TIGR02332       322 AGWL-LASA---T---------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINA  376 (412)
T ss_pred             HHHH-HHHh---c---------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHH
Confidence            3322 2211   0               111212222223333333333334455567788877      9999999999


Q ss_pred             HHHHhHHHhhhhhhheecccc-chhhhhHHHHH
Q 008355          188 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVA  219 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~  219 (568)
                      ..++|+.++|.+.+.+.+..| |++.|++.++.
T Consensus       377 ~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       377 TGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999875 99988876653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.11  E-value=4.6e-10  Score=115.55  Aligned_cols=155  Identities=12%  Similarity=0.082  Sum_probs=129.6

Q ss_pred             ceehhHhhHHHHHHHHHHHHH-HHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMS-TNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      |.++..+...++....++... .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+.+..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            445666666677777776666 7778888877999999999999999999999999999999999 99999988877777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++..+.....                  .+.+.+++..++.|++.+...+...+++.|.+|+++      |+++.++++.
T Consensus       289 ~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  344 (365)
T TIGR00900       289 LAILVVGLTP------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFS  344 (365)
T ss_pred             HHHHHHHhhc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHH
Confidence            6666665541                  136667788889999999999999999999999888      9999999999


Q ss_pred             HHHHhHHHhhhhhhheecccc
Q 008355          188 SINIGALVASSVLVWIQMNVG  208 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g  208 (568)
                      ..++|..++|.++|++.+.+|
T Consensus       345 ~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       345 LSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999887654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.11  E-value=1.4e-10  Score=123.11  Aligned_cols=163  Identities=15%  Similarity=0.076  Sum_probs=123.7

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|.++.+++..++....++....+.+.|.+..++ +..+.++......++..++.++.|+++||+ |||+++..+.++.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~  298 (437)
T TIGR00792       221 NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMV  298 (437)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            3456667777777777777665556666655566 455677777778899999999999999999 99999999988877


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCch-hhhhhhhhhhhHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDG-EREKKSSFFNWFY  186 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~  186 (568)
                      ++.+...+..                  .+.+.+++..++.|++.+...+...++++|..|.++.. ....+|.++++++
T Consensus       299 ~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  360 (437)
T TIGR00792       299 LGYLIFFFAG------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRT  360 (437)
T ss_pred             HHHHHHHHcc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence            7776665431                  23455666777889999988899999999987643210 0012788999999


Q ss_pred             HHHHHhHHHhhhhhhheeccccch
Q 008355          187 LSINIGALVASSVLVWIQMNVGWG  210 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~  210 (568)
                      +...+|..+++.+.|++.+..||.
T Consensus       361 ~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       361 FVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999988777764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.10  E-value=1.3e-09  Score=113.96  Aligned_cols=175  Identities=15%  Similarity=-0.005  Sum_probs=126.4

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHH-HHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSG-TCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~-~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      .++..+...++..........+.++|+++ .|++..++|++...... ...++.+++|++.||+ |+|+.+..+.++..+
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS  286 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            34555556666667677777788888875 79999999998887764 5567789999999999 999999887766533


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCC-CCchhhhhhhhhhhhHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE-TDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~  187 (568)
                      .............             ..+....+....+.+++.|...+...+...+..++ ++      +++.+++.+.
T Consensus       287 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  347 (390)
T TIGR02718       287 LALLWFAQAAFWL-------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQS  347 (390)
T ss_pred             HHHHHHHHHHccc-------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHH
Confidence            3322221111000             01233344444555666777777777777777765 55      8999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHH
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~  225 (568)
                      ..++|..++|.++|++.+..||+..|++.+++.+++++
T Consensus       348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887766555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00896 CynX cyanate transporter

Probab=99.08  E-value=1.4e-09  Score=112.17  Aligned_cols=154  Identities=12%  Similarity=0.012  Sum_probs=118.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +..+.+.+..++....++....++|.|+++ .|.+..+.+...+.+.++..++.++.|+++||+.+||+.+.++.++.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            345655666667777888888999999975 7999999999999999999999999999999993456666777777777


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +.+.+.+.   +.              .+.  . ...++.|++.|...|...+.+.+..++++     .++...++.+..
T Consensus       276 ~~~~~~~~---~~--------------~~~--~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~  330 (355)
T TIGR00896       276 GLCGLLFA---PM--------------HGL--W-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQSI  330 (355)
T ss_pred             HHHHHHHh---hh--------------hHH--H-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHHH
Confidence            76666554   11              111  1 13467799999988887777766555432     178888988888


Q ss_pred             HHHhHHHhhhhhhheecccc
Q 008355          189 INIGALVASSVLVWIQMNVG  208 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g  208 (568)
                      .++|..++|.+.|++.+..|
T Consensus       331 ~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       331 GYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999988776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.07  E-value=1e-09  Score=110.57  Aligned_cols=173  Identities=13%  Similarity=0.087  Sum_probs=144.0

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .+++...++..++.+=+.-++......|..+++|++..+..++....++.++++.++.|++.||+ |.|++++++.++..
T Consensus       251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~  329 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILS  329 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHH
Confidence            34777777888888888888888999999999999999999999999999999999999999999 99999999988877


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      +.++..-+.                   .....+++.-++.|...|+.++.+-++.++..|+++      -++.||+|++
T Consensus       330 ~~~~~~~~~-------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyal  384 (438)
T COG2270         330 IAALYLIFL-------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYAL  384 (438)
T ss_pred             HHHHHHHHc-------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhh
Confidence            766655544                   223445566678899999999999999999999998      8999999999


Q ss_pred             HHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHH
Q 008355          188 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~  226 (568)
                      ....+..+||.+.+.+.+..| -|..+....+...+.+++
T Consensus       385 tgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         385 TGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            999999999999998888765 555555444444444443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.05  E-value=2.3e-09  Score=113.43  Aligned_cols=148  Identities=16%  Similarity=0.065  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccC
Q 008355           42 RLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSG  121 (568)
Q Consensus        42 ~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~  121 (568)
                      ....+.+..++|.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+.+..+.++..+........   +.
T Consensus       244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~---~~  318 (426)
T PRK12307        244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI---PQ  318 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---cc
Confidence            33444567788988875 699998999888889999999999999999999 99999988877666555444332   11


Q ss_pred             CCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhh
Q 008355          122 LKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV  201 (568)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~  201 (568)
                                    .+...+....+..+.+..+..+..+.++.|.+|++.      |++++|+.+...++|+.++|.+.+
T Consensus       319 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g  378 (426)
T PRK12307        319 --------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAAT  378 (426)
T ss_pred             --------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHH
Confidence                          112212122222223333334566778899999988      999999999999999999999999


Q ss_pred             heeccccchhhhh
Q 008355          202 WIQMNVGWGWGFG  214 (568)
Q Consensus       202 ~i~~~~g~~~~f~  214 (568)
                      ++.+.+|+....+
T Consensus       379 ~l~~~~g~~~~~~  391 (426)
T PRK12307        379 WLGITMGLGAALT  391 (426)
T ss_pred             HHHHcccHHHHHH
Confidence            9999888665433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.05  E-value=2.6e-09  Score=114.53  Aligned_cols=177  Identities=18%  Similarity=0.025  Sum_probs=123.1

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHH--------
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTI--------   99 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~--------   99 (568)
                      ++.++...+..++....++.+..++|.|+++.+|.+..+.++..+...++..++.+++|+++||+ ++|+..        
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            45678888889999999999999999999999999999999999999999999999999999998 544221        


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhh
Q 008355          100 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS  179 (568)
Q Consensus       100 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (568)
                      ..+......+..+.... ...               .+....++...+.+.+.+...+.......|..|. .      ++
T Consensus       339 ~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g  395 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALP-YLS---------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LG  395 (465)
T ss_pred             HHHHHHHHHHHHHHHHH-HcC---------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HH
Confidence            11111111111111111 000               1233334444444555555555555555566554 5      89


Q ss_pred             hhhhhHHHHHHHhHHHhhhhhhheeccc---cchhhhhHHHHHHHHHHHHHH
Q 008355          180 SFFNWFYLSINIGALVASSVLVWIQMNV---GWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       180 ~~~~~~~~~~~ig~~~~p~~~~~i~~~~---g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      .+.++.+...++|+.++|.+.+++.+..   +|+..|.+.++..+++.+...
T Consensus       396 ~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       396 FIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            9999999999999999999999987653   388888887766666655443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.05  E-value=2.3e-09  Score=111.47  Aligned_cols=164  Identities=11%  Similarity=0.064  Sum_probs=119.7

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |..+...+...+....++....+.|.|+++++|.++.+.+.+.+...++..++.++.|++.||+ |||+.+..+.+...+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~  284 (385)
T TIGR00710       206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAV  284 (385)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3445555555666667777778889999989999999999999999999999999999999999 999999888777777


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +..++......+.              .....+++..++.|++.+...+.......|..| ++      |+++.++++..
T Consensus       285 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~  343 (385)
T TIGR00710       285 SAVLLEITAILGL--------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTL  343 (385)
T ss_pred             HHHHHHHHHHhcc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHH
Confidence            7666654421111              223445556677889888888888888888776 45      89999987776


Q ss_pred             HHH-hHHHhhhhhhheeccccchhhhhH
Q 008355          189 INI-GALVASSVLVWIQMNVGWGWGFGI  215 (568)
Q Consensus       189 ~~i-g~~~~p~~~~~i~~~~g~~~~f~~  215 (568)
                      ... |...+|. .+.+.+..+|...+..
T Consensus       344 ~~~~g~i~~~~-~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       344 RLVLGAIVGYL-VSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHH-HHhccccChHHHHHHH
Confidence            654 5555555 4555555455544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.05  E-value=2.9e-09  Score=111.09  Aligned_cols=171  Identities=8%  Similarity=0.034  Sum_probs=118.3

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      .+..+...++.+...+....++++|+.+.+|++..+.++..+...++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            34444444454555555566778888888999999999999999999999999999999999 99999988887777776


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCccccccccccc-CCCCCchhhhhhhhhhhhHHHHH
Q 008355          111 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQ-FDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      ++.....                  ++.+...+..++.+.|.+...+.......+. .+++.      ++.+  ..+...
T Consensus       280 ~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~  333 (382)
T PRK10091        280 LMLFFFG------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAF  333 (382)
T ss_pred             HHHHHHH------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHH
Confidence            5554321                  1233344445555665554444444333333 33333      4443  335677


Q ss_pred             HHhHHHhhhhhhheecc-ccchhhhhHHHHHHHHHHHHHH
Q 008355          190 NIGALVASSVLVWIQMN-VGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~-~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      ++|..+||.++|++.+. .+|++.+.+.++..++.+....
T Consensus       334 ~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        334 NLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            89999999999998885 6899999888766655554433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.05  E-value=1.3e-08  Score=110.26  Aligned_cols=200  Identities=14%  Similarity=0.169  Sum_probs=150.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.+.+++....+.+..+.+.......-+.+.++++.++.|++.+.+-++..+...+..+++-|. -|-|.+-+|.+++++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence            4445555555555555557777777788999999999999999999999999999999999998 899999999999999


Q ss_pred             HHHHHHHhhhccCCCC------------C-----CC------------CCCC--CC-CCc-hhHHHHHHHHHHHhhcccC
Q 008355          109 GMTLLTLTASVSGLKP------------S-----CD------------KDAC--HP-TGA-QTAVTFVALYLIALGTGGI  155 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~------------~-----~~------------~~~~--~~-~~~-~~~~~~~~~~l~g~g~g~~  155 (568)
                      +.+++++-+....--+            +     ++            .+.+  ++ +.. -+..++++.++.|+|.-.+
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            9999875421110000            0     00            0111  12 222 3347888999999999999


Q ss_pred             cccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc------------------cc-chhhhhHH
Q 008355          156 KPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN------------------VG-WGWGFGIP  216 (568)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~------------------~g-~~~~f~~~  216 (568)
                      ++...+|+=|...+++      -...+|+.+....+|+++|-++++++...                  .| |+..|++.
T Consensus       255 ~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~  328 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC  328 (735)
T ss_pred             ccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence            9999999999988877      78889999999999999999988766421                  13 77888888


Q ss_pred             HHHHHHHHHHHHhcCceee
Q 008355          217 AVAMAIAVVFFFSGSRLYR  235 (568)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~  235 (568)
                      +.+.++..+.++++.++.+
T Consensus       329 g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  329 GALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHhCcccCc
Confidence            8777777666666655443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.05  E-value=2.5e-11  Score=130.69  Aligned_cols=186  Identities=13%  Similarity=0.200  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccC-
Q 008355           43 LAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSG-  121 (568)
Q Consensus        43 ~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~-  121 (568)
                      ...++.+.....-+++.++++..++|++.+.+-++..+..++..++.+|. -|-|.+-.|.++.++|++++++-+.+.. 
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            56666666666778999999999999999999999999999999999998 8889999999999999998875332211 


Q ss_pred             C--CC----CC----CCCCC---------------C---C--CCchhHHHHHHHHHHHhhcccCcccccccccccCCCCC
Q 008355          122 L--KP----SC----DKDAC---------------H---P--TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETD  171 (568)
Q Consensus       122 ~--~~----~~----~~~~~---------------~---~--~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  171 (568)
                      +  ..    .+    +.+.|               +   +  ....+..++++.++.|+|....++...+|+=|..++++
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~  174 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN  174 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence            0  00    00    00112               1   1  22245778999999999999999999999999999888


Q ss_pred             chhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc---------------------cc-chhhhhHHHHHHHHHHHHHHh
Q 008355          172 DGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN---------------------VG-WGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       172 ~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~---------------------~g-~~~~f~~~~~~~~~~~~~~~~  229 (568)
                            -+..+|+++....+|+.+|.++++.+...                     .| |+..|++.++..++..+-++.
T Consensus       175 ------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  175 ------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                  78889999999999999999988766421                     23 777787777666655555555


Q ss_pred             cCceee
Q 008355          230 GSRLYR  235 (568)
Q Consensus       230 ~~~~~~  235 (568)
                      ++++.+
T Consensus       249 FPk~lp  254 (539)
T PF03137_consen  249 FPKKLP  254 (539)
T ss_dssp             ------
T ss_pred             CCccCC
Confidence            554443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10133 L-fucose transporter; Provisional

Probab=99.04  E-value=2.5e-09  Score=113.57  Aligned_cols=167  Identities=17%  Similarity=0.203  Sum_probs=126.0

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHH-HHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYL-QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      ++...+..++.....++...+++.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ |||+++..+.++.+++
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~  338 (438)
T PRK10133        260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            34455555666667677777888886 567899999999999999999999999999999999 9999998887766655


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      ..+..+.   +                +.. .+....+.|++.+...|...+...+.+|++       .+.+.++..+ .
T Consensus       339 ~~~~~~~---~----------------~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~~~-~  390 (438)
T PRK10133        339 CLISAFA---G----------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIVM-T  390 (438)
T ss_pred             HHHHHHc---C----------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHHhH-H
Confidence            5544433   1                122 245567789999999999999999988764       3555665544 3


Q ss_pred             HHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHH
Q 008355          190 NIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~  226 (568)
                      .+|+.++|.+.|.+.+..| -+..|++..+..+..+..
T Consensus       391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             hccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            4678888888999988887 788888766555444433

>TIGR00895 2A0115 benzoate transport

Probab=99.03  E-value=1.5e-09  Score=113.19  Aligned_cols=147  Identities=13%  Similarity=0.040  Sum_probs=115.2

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      ..+.+.+..++....++....++| ++.+++|.+..+.+...+...++..++.++.|+++||+ |||+.+.. ..+..+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~-~~~~~~~  327 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALL-LLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHH-HHHHHHH
Confidence            344555556666777777777888 66678999999999999999999999999999999999 99854443 3333333


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      ..+.....                  .+...+++..++.|++.+...+...+++.|.+|+++      |++++++.+...
T Consensus       328 ~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~  383 (398)
T TIGR00895       328 AVLVGSTL------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIG  383 (398)
T ss_pred             HHHHHHHh------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHH
Confidence            33332210                  235556777788899999999999999999999988      999999999999


Q ss_pred             HHhHHHhhhhhhhe
Q 008355          190 NIGALVASSVLVWI  203 (568)
Q Consensus       190 ~ig~~~~p~~~~~i  203 (568)
                      ++|..++|.++|++
T Consensus       384 ~~g~~~g~~~~G~l  397 (398)
T TIGR00895       384 RLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHhHHhc
Confidence            99999999999875

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.03  E-value=2.2e-09  Score=115.95  Aligned_cols=155  Identities=10%  Similarity=-0.030  Sum_probs=130.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|......+..++....+++...++|.|+++.+|.|..++|.......++..++.++.|++.||+ |+|+.+..+.++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~  336 (495)
T PRK14995        258 HRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSA  336 (495)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHH
Confidence            34566667777777888888888999999999999999999999999999999999999999999 99999988888887


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++..++.....                ..+.+..++..++.|+|.|...+.....+.+..|+++      ++.+.++++.
T Consensus       337 ~~~~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  394 (495)
T PRK14995        337 LSFYGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETM  394 (495)
T ss_pred             HHHHHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHH
Confidence            77766554311                1234445667788899999988888888888899888      9999999999


Q ss_pred             HHHHhHHHhhhhhhheec
Q 008355          188 SINIGALVASSVLVWIQM  205 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~  205 (568)
                      ..++|..+|+.+.+.+.+
T Consensus       395 ~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        395 AYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999988754

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.02  E-value=8.3e-09  Score=110.92  Aligned_cols=162  Identities=12%  Similarity=0.074  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 008355           48 MSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCD  127 (568)
Q Consensus        48 ~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  127 (568)
                      ...+.|. +.+++|.+....++......+...++.+++|+++||+ |||+.++.+.++.+++.+.++.....+.      
T Consensus       290 ~~~~~p~-i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------  361 (479)
T PRK10077        290 VLYYAPE-IFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------  361 (479)
T ss_pred             HHHHHHH-HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc------
Confidence            3334444 4456888877777777778888899999999999999 9999999999988888877664411010      


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHhhccc-CcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhh-----
Q 008355          128 KDACHPTGAQTAVTFVALYLIALGTGG-IKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV-----  201 (568)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~-----  201 (568)
                              .+. ......++.+.+.+. ..|....+++|.+|+++      |++++++.+...++|..+++.+.+     
T Consensus       362 --------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~  426 (479)
T PRK10077        362 --------PGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKN  426 (479)
T ss_pred             --------ccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence                    112 222333344444433 34677899999999888      999999998888888888755544     


Q ss_pred             -heeccccchhhhhHHHHHHHHHHHHHHhcCc
Q 008355          202 -WIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       202 -~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  232 (568)
                       ++.+.++|++.|++.++..+++.++.+...+
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        427 SWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             cchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence             4456788988888877665555555444333

>PRK10054 putative transporter; Provisional

Probab=99.01  E-value=2.9e-09  Score=111.57  Aligned_cols=175  Identities=10%  Similarity=-0.029  Sum_probs=132.2

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHH--hCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQ--LNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      .|.++...+..++..+.+.....+++.|+...  .+.+....+.+.....+......++.|++.||+ ++|+.+..+.++
T Consensus       205 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~  283 (395)
T PRK10054        205 DKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLC  283 (395)
T ss_pred             CceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHH
Confidence            34566666667777766666666777777543  455566677777777777777788999999999 999999988887


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++......+.                  ++.+.+.+..++.++|.+...|.....+.+..|++.      |++.++..
T Consensus       284 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~  339 (395)
T PRK10054        284 FVIGLVGFIFSG------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQ  339 (395)
T ss_pred             HHHHHHHHHHcc------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHH
Confidence            777776665431                  235556667788899998888888889999999887      88888875


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      + ...+|..+||.++|.+.+..|....|++.+....++.++.+
T Consensus       340 ~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        340 S-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            5 56689999999999999999988888776655554444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.01  E-value=3.3e-09  Score=114.00  Aligned_cols=173  Identities=13%  Similarity=0.103  Sum_probs=145.7

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.+..++...++.++....+...+|.+.++.+|.+....|++.+++.++..++.++.+++.+|+ ++++.+..+.+.+++
T Consensus       218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~  296 (524)
T PF05977_consen  218 PPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFAL  296 (524)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHH
Confidence            3445555555566666556667789999999999999999999999999999999999999998 999999988888888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +.+.++++                   .+.+...+..++.|++.....+...+.+-+..|++.      ||+.++++++.
T Consensus       297 ~~~~lal~-------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~  351 (524)
T PF05977_consen  297 ALLLLALS-------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMV  351 (524)
T ss_pred             HHHHHhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHH
Confidence            88888876                   457777778888899988888888888888999988      99999999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      ...+..+|..+.|.+.+.+|-+..+.++++..++..++.
T Consensus       352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988887776555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.00  E-value=1.8e-09  Score=116.18  Aligned_cols=157  Identities=13%  Similarity=0.110  Sum_probs=130.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|.++...+..++..+.+++...++|.|+++.+|.+..+.++......++..++.++.|++.||+ |||+.+.++.++.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~  332 (485)
T TIGR00711       254 YRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYA  332 (485)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHH
Confidence            34566667777888888888889999999999999999999999999999999999999999999 99999999888888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++..++..... +.              .+.+.++...++.|+|.+...+.......+..|+++      |+++.++++.
T Consensus       333 ~~~~~~~~~~~-~~--------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  391 (485)
T TIGR00711       333 VGFYWRAFTFT-PD--------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNF  391 (485)
T ss_pred             HHHHHHhccCC-CC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHH
Confidence            77776653211 11              234556666788899998887777777778888877      9999999999


Q ss_pred             HHHHhHHHhhhhhhheecc
Q 008355          188 SINIGALVASSVLVWIQMN  206 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~  206 (568)
                      ..++|+.+|+.+.+.+.++
T Consensus       392 ~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       392 TRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.99  E-value=1.1e-08  Score=107.12  Aligned_cols=168  Identities=7%  Similarity=-0.018  Sum_probs=122.1

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |.++..+...++.....++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +++..+....+...+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~  294 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            3345555555565666666667775555667899999999999999999999999999999996 555444433332333


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +..+....                   .+.+.+.+..++.|++.+...+..++++.+..| ++      +++..++....
T Consensus       295 ~~~l~~~~-------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~  348 (394)
T PRK10213        295 ALVLTLWG-------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQ------AEKAGSIQVAV  348 (394)
T ss_pred             HHHHHHHh-------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-cc------HHHHHHHHHHH
Confidence            33333333                   235566777888899999999888888888887 33      55667777778


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIA  223 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~  223 (568)
                      .++|..+||.++|++.+..|++..+...++..++.
T Consensus       349 ~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        349 IQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            89999999999999999999988888776544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.99  E-value=1.1e-08  Score=107.54  Aligned_cols=186  Identities=11%  Similarity=0.028  Sum_probs=127.8

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +..|.+.+..++...+|.++..++|.|+++.++  ............+...+.+|++|+++||+ |++|++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            347888888888888888888899999887653  33333334456788889999999999999 999999998887776


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCc---------------h
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDD---------------G  173 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~---------------~  173 (568)
                      +.......  .|.           +...+.+.+.+..+...++.|.-..++.-++.+.+|+++.               .
T Consensus       329 ~~~~~~l~--lp~-----------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~  395 (462)
T PRK15034        329 FSALLFLT--LPG-----------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQRE  395 (462)
T ss_pred             HHHHHHHH--hcc-----------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhH
Confidence            66443332  121           0113456566655555555555556677777777774100               0


Q ss_pred             hhhhhhhhhhhHHHHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHhc
Q 008355          174 EREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       174 ~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      .+.+-|.+.|+......+|+.+-|.+.+...+..| +...|+...+..++++++.+..
T Consensus       396 ~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        396 AVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            01125677788888999999999988787766654 8888888777777776665543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.98  E-value=9.8e-09  Score=108.82  Aligned_cols=164  Identities=18%  Similarity=0.175  Sum_probs=136.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|..+.+++..++..+++.......+.|.+..+|.+ ...+.......+...++.++.++++||+ |+|+++..+.++.+
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~  301 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAA  301 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHH
Confidence            466778888888888888888888888888888877 5567778888999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchh-hhhhhhhhhhHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGE-REKKSSFFNWFY  186 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~  186 (568)
                      ++.++..+...                 .+.+.+++..++.|++.+...+...++++|..+.++.++ +.+.|..++.+.
T Consensus       302 ~~~~~~~~~~~-----------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~  364 (428)
T PF13347_consen  302 LGFLLLFFLGP-----------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS  364 (428)
T ss_pred             HHHHHHHHHHh-----------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence            99888877621                 367888899999999999999999999999998654221 112577888999


Q ss_pred             HHHHHhHHHhhhhhhheeccccch
Q 008355          187 LSINIGALVASSVLVWIQMNVGWG  210 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~  210 (568)
                      ....+|..+++.+.+.+.+..|+.
T Consensus       365 ~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  365 FFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999998887665544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.97  E-value=1.4e-07  Score=94.13  Aligned_cols=154  Identities=18%  Similarity=0.112  Sum_probs=108.0

Q ss_pred             HHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCc
Q 008355           57 QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGA  136 (568)
Q Consensus        57 ~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (568)
                      -++.|++..+++.+.........+..++.|.++||+ |||+..++..++.+++++.-- .                   .
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~-------------------~  119 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-S-------------------S  119 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-c-------------------c
Confidence            357999999999999999999999999999999999 999999988888877765322 2                   4


Q ss_pred             hhHHHHHHHHHHHhhcccCcccccccccccCCCCC-chhhhhhhhhhhhHH-HHHHHhHHHhhhhhhheeccccc--hhh
Q 008355          137 QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETD-DGEREKKSSFFNWFY-LSINIGALVASSVLVWIQMNVGW--GWG  212 (568)
Q Consensus       137 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~-~~~~ig~~~~p~~~~~i~~~~g~--~~~  212 (568)
                      +...++++|++.|++.....++-.+.+.....++. +++  -.+.-++... ..+.+-++.+.+++-++.+..+.  ..+
T Consensus       120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaP  197 (354)
T PF05631_consen  120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAP  197 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcch
Confidence            68889999999999999988888776643332222 111  1333333322 22333344444445455555544  788


Q ss_pred             hhHHHHHHHHHHHHHHhcCce
Q 008355          213 FGIPAVAMAIAVVFFFSGSRL  233 (568)
Q Consensus       213 f~~~~~~~~~~~~~~~~~~~~  233 (568)
                      |..+.+..+++.+++...+++
T Consensus       198 F~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  198 FDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HHHHHHHHHHHHHHHHhcccc
Confidence            888887777777666555544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.96  E-value=6.1e-09  Score=112.78  Aligned_cols=168  Identities=16%  Similarity=0.124  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhh------------hHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           36 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASN------------NVTNWSGTCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~------------~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      ...++..+.+|++..+.|.+++ +.|++..+.+.            ......++..++.++.++++||+ |||+.++++.
T Consensus       295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~  372 (502)
T TIGR00887       295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGF  372 (502)
T ss_pred             HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHH
Confidence            3344556778888888888875 57887543321            12233445556788899999999 9999998888


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      ++.+++..+.+.......              .+ ..+....+...++..+..+....+.+|.+|++.      |+++.+
T Consensus       373 ~~~~~~~~~l~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g  431 (502)
T TIGR00887       373 FILTVLFFVLGFAYNHLS--------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHG  431 (502)
T ss_pred             HHHHHHHHHHHHHHHhcc--------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHH
Confidence            777776665554311000              11 111111111222223344566777899999999      999999


Q ss_pred             hHHHHHHHhHHHhhhhhhheecc----------ccchhhhhHHHHHHHHHHHH
Q 008355          184 WFYLSINIGALVASSVLVWIQMN----------VGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~----------~g~~~~f~~~~~~~~~~~~~  226 (568)
                      +.+....+|+.++|.+.+++.+.          .++...|++.++..+++.+.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       432 ISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999988774          33455666665555544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.94  E-value=9.5e-09  Score=107.87  Aligned_cols=152  Identities=11%  Similarity=0.036  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 008355           47 GMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSC  126 (568)
Q Consensus        47 ~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  126 (568)
                      ....++|.|+++..+ ++.+.++..+...+.......+.+++.||.++.++.+..+.++..++..+++..          
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------  294 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------  294 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence            345677888876555 667888887777766665555556666653276777777777777777666655          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc
Q 008355          127 DKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN  206 (568)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~  206 (568)
                               ++.+.+.+..++.+++.+...|...+++.+..|+++      |++++++++...++|..+||.++|++.+.
T Consensus       295 ---------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        295 ---------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence                     235555666677888888888888999999999988      99999999999999999999999999876


Q ss_pred             c---c-chhhhhHHHHHHHHHH
Q 008355          207 V---G-WGWGFGIPAVAMAIAV  224 (568)
Q Consensus       207 ~---g-~~~~f~~~~~~~~~~~  224 (568)
                      .   + ....+++.+...++..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        360 GKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             HhhcCCcchHHHHHHHHHHHHH
Confidence            4   2 2444444444444333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.94  E-value=9e-09  Score=122.79  Aligned_cols=164  Identities=12%  Similarity=0.037  Sum_probs=132.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChh-hhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNV-TASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      +.++..++..++..+..+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++.+.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            3455555556666666677778899999999999998 999999999999999999999999999 99999888888777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++.+++.+.                   .+.+.+++..++.|++.+...+...+++.+.+|++.      |++++++.++
T Consensus       311 ~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~  365 (1146)
T PRK08633        311 LSLFLLPTA-------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNF  365 (1146)
T ss_pred             HHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHH
Confidence            777776655                   346667777888899999988889999999999998      9999999999


Q ss_pred             HHHHhHHHhhhhhhheec-cccchhhhhHHHH
Q 008355          188 SINIGALVASSVLVWIQM-NVGWGWGFGIPAV  218 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~-~~g~~~~f~~~~~  218 (568)
                      ..++|..+++.+++.+.. .+++...|++.+.
T Consensus       366 ~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        366 LQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999888887765543 2345455554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.88  E-value=3.2e-08  Score=102.48  Aligned_cols=167  Identities=10%  Similarity=-0.041  Sum_probs=114.1

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCch---HHHHH-HH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRF---WTIAS-FS  103 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk---~~~~~-~~  103 (568)
                      .|.+|.+.+..++....+|++..|+|.|+++ .|++.. .+.......+...   +..++++||. .||   +.... ..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~  264 (368)
T TIGR00903       191 RKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAA  264 (368)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHH
Confidence            3567888889999999999999999999964 677754 4555444444444   4458888887 543   33222 33


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      +..++.....+..                   .+....++...+.+++.....+...++.+|.+|++.      |+++.|
T Consensus       265 ~~~a~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G  319 (368)
T TIGR00903       265 LLIAAFFLALAFE-------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAG  319 (368)
T ss_pred             HHHHHHHHHHHHc-------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccc
Confidence            3333333333322                   112233444455667677777778889999999999      999999


Q ss_pred             hHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      +.+...++|+..+|.+.+.+..  |.+..|.+.++..+++.+..
T Consensus       320 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       320 AIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887663  66666766665555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.88  E-value=1.6e-08  Score=120.62  Aligned_cols=182  Identities=9%  Similarity=-0.043  Sum_probs=135.3

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|.++..++..++.++.+..+..++|.|+++.+|.+..+.|++.+.+.++..++.++.|+++|+. ++++.+..+.++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~  302 (1140)
T PRK06814        224 DKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMG  302 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHH
Confidence            45677777777888888888889999999999999999999999999999999999999999988 77776666666555


Q ss_pred             HHHHHHHHhhh--cc-CCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008355          108 LGMTLLTLTAS--VS-GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW  184 (568)
Q Consensus       108 i~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (568)
                      ++.+.+.+...  .+ ........  .-....+.+.+++..++.|++.+...+...+++.+.+|++.      ||+++|.
T Consensus       303 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~  374 (1140)
T PRK06814        303 LFGLDLAFASSSVPAEPAQLKSIL--VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAA  374 (1140)
T ss_pred             HHHHHHHhcccccccccccccchh--hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHH
Confidence            55544433200  00 00000000  00000245567777888899999999999999999999999      9999999


Q ss_pred             HHHHHHHhHHHhhhhhhheec-cccchhhhhHHHH
Q 008355          185 FYLSINIGALVASSVLVWIQM-NVGWGWGFGIPAV  218 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~~~~i~~-~~g~~~~f~~~~~  218 (568)
                      +++..++|..+++++++.+.+ ..++...|++.++
T Consensus       375 ~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        375 NNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999999999999988863 4456666555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.87  E-value=5.1e-08  Score=102.10  Aligned_cols=165  Identities=10%  Similarity=-0.054  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008355           39 CCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTAS  118 (568)
Q Consensus        39 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~  118 (568)
                      .+...........++.|+++.+|.+..+.|++.+...++..++.+..+++.||. ++++.+..+.+ .++.....+..  
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~--  290 (393)
T PRK11195        215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ--  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH--
Confidence            333444555556677889889999999999999999999999999999999998 99988877743 33333333333  


Q ss_pred             ccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhh
Q 008355          119 VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASS  198 (568)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~  198 (568)
                                       ++.+...+..++.|++.+...+...+.+.+..|++. +    +++++++.+...++|..++..
T Consensus       291 -----------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-~----~g~~~a~~~~~~~~~~~~~~~  348 (393)
T PRK11195        291 -----------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-G----AGHSIAVQNFNENLAMLLMLG  348 (393)
T ss_pred             -----------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-c----chhHHHHHhHHHHHHHHHHHH
Confidence                             235555666778899998888888888877644432 1    699999999999999999999


Q ss_pred             hhhheeccccchhhhhHHHHHHHHHHHHHHhc
Q 008355          199 VLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       199 ~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      +.+.+ +..|-+..+.+..+..++.+.+...+
T Consensus       349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        349 LYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88855 56787777777665555555444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.86  E-value=4.2e-09  Score=107.83  Aligned_cols=146  Identities=21%  Similarity=0.216  Sum_probs=120.4

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQG-NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      +.+|.++...++..+.++....++|.|+.+.+|.+ ..+.+...+...+...++.++.|+++||+ |+|+..........
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  284 (352)
T PF07690_consen  206 PVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLI  284 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence            34555666666666788888899999989999999 78999999999999999999999999999 99888877777666


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++...+.+....                .+....++..++.|++.+...+...+++.|.+|+++      |+++.++.+.
T Consensus       285 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~  342 (352)
T PF07690_consen  285 LGALGLLLLPFS----------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNS  342 (352)
T ss_dssp             HHHHHHCCSHHH----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHH
Confidence            666655543211                234556667788899999999999999999999988      9999999999


Q ss_pred             HHHHhHHHhh
Q 008355          188 SINIGALVAS  197 (568)
Q Consensus       188 ~~~ig~~~~p  197 (568)
                      ..++|..+||
T Consensus       343 ~~~~~~~igP  352 (352)
T PF07690_consen  343 IGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHCC
Confidence            9999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.85  E-value=3.8e-08  Score=102.17  Aligned_cols=148  Identities=9%  Similarity=-0.074  Sum_probs=99.2

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      .+..++..++.....+....+.|.++.+.+|.+..+.+.+.+...++..++.++.|++.||+ |||+.+..+..+..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            44445555555556666667778888888999999999999999999999999999999999 99999988877654433


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH-H
Q 008355          111 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS-I  189 (568)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~  189 (568)
                      +........+               .+.+.+.++..+.+.+.+...+.....+.|..| +.      ++++.+..+.. .
T Consensus       275 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~  332 (377)
T PRK11102        275 IWLVVSALLD---------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRF  332 (377)
T ss_pred             HHHHHHHHHh---------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHH
Confidence            3222211101               123334444444444455555555566677666 45      78888875443 4


Q ss_pred             HHhHHHhhhhhh
Q 008355          190 NIGALVASSVLV  201 (568)
Q Consensus       190 ~ig~~~~p~~~~  201 (568)
                      .+|+.+++.+++
T Consensus       333 ~~g~~~g~~~~~  344 (377)
T PRK11102        333 GIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHh
Confidence            577777776654

>PRK09848 glucuronide transporter; Provisional

Probab=98.85  E-value=7.8e-09  Score=110.24  Aligned_cols=164  Identities=14%  Similarity=0.128  Sum_probs=125.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|.++...+..++....++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..
T Consensus       227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~  305 (448)
T PRK09848        227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGT  305 (448)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            45566677777777777777777777788888887766555555555667788899999999999 99999999998888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhh-hhhhhhhhhHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGER-EKKSSFFNWFY  186 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~  186 (568)
                      ++.+++.+.   +.              .+.+.+++..++.|+|.+...+...++.+|..|.++...- ..+|..++.++
T Consensus       306 i~~~~~~~~---~~--------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~  368 (448)
T PRK09848        306 CGYLLFFWV---SV--------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFS  368 (448)
T ss_pred             HHHHHHHHc---Cc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence            887766654   11              3456667777888999999999999999998876541110 11588889999


Q ss_pred             HHHHHhHHHhhhhhhheeccccc
Q 008355          187 LSINIGALVASSVLVWIQMNVGW  209 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~  209 (568)
                      +...+|..+|+.+.+.+.+..||
T Consensus       369 ~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        369 FTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999998887665555

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.9e-08  Score=107.78  Aligned_cols=176  Identities=16%  Similarity=0.126  Sum_probs=150.2

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccC--chHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG--RFWTIASFSIIY  106 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~G--rk~~~~~~~~~~  106 (568)
                      +..+.+++...+..++++....+++.|.+ .+|++..+++.++++..+...+++++.|+++|+. .  ++.+..++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            46777888888889999988899999988 7999999999999999999999999999999998 6  344555666666


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      .++.+.+++.                   ++.+.++..-++.|++.|...+..+..+.|+.+.++      -..++|+..
T Consensus       376 gl~~~~~p~~-------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l  430 (509)
T KOG2504|consen  376 GLARLFLPFA-------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLL  430 (509)
T ss_pred             HHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHH
Confidence            6666666766                   457778888889999999998888889999999988      999999999


Q ss_pred             HHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHhcC
Q 008355          187 LSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      +...++..+||.+.|++.+..| |...|+..++..+++....+..+
T Consensus       431 ~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  431 LFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999888 99999998887777765554433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.83  E-value=5.7e-08  Score=101.34  Aligned_cols=180  Identities=13%  Similarity=0.054  Sum_probs=133.5

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |.+++.++..++...+.-....+.+.|+++.-|.+....+...+...++-.+.-...+++-.|+ |.|++++++.+..++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v  285 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV  285 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3455666667777777777778889998864447777788777777888888889999999999 999999999988888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH-
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL-  187 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-  187 (568)
                      =..+.+.... |.             .........+..+.|+..|....+...++.+..|++.      |+++.+++.. 
T Consensus       286 R~~l~a~~~~-~~-------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~  345 (400)
T PF03825_consen  286 RWLLYAYFSD-PW-------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSAL  345 (400)
T ss_pred             HHHHHHHhcC-Cc-------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHH
Confidence            7777776511 10             0011223344567899999999999999999999999      9999999766 


Q ss_pred             HHHHhHHHhhhhhhheeccccchh------hhhHHHHHHHHHHHHHHh
Q 008355          188 SINIGALVASSVLVWIQMNVGWGW------GFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~------~f~~~~~~~~~~~~~~~~  229 (568)
                      ...+|..+|..++|++.+.+|-+.      .+.+.++..++..+++..
T Consensus       346 ~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  346 SFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            467999999999999999877553      334444444444444333

>PRK11043 putative transporter; Provisional

Probab=98.82  E-value=7.5e-08  Score=101.05  Aligned_cols=153  Identities=10%  Similarity=0.011  Sum_probs=109.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008355           35 LGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT  114 (568)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~  114 (568)
                      .+...+....++....++|.|++ +.|++..+.|.......++..++.+..+++.||+ |+|+.+....+..+++.+.+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~  286 (401)
T PRK11043        209 VLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIW  286 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHH
Confidence            33334445556666677888776 5899999999888888888889999999999999 999987666655555444332


Q ss_pred             HhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHH
Q 008355          115 LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGAL  194 (568)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  194 (568)
                      .....+.              .+...+++...+.+++.+...|.......+..| ++      |+++.++++.....++.
T Consensus       287 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~  345 (401)
T PRK11043        287 LASLLSH--------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCF  345 (401)
T ss_pred             HHHHhcc--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHH
Confidence            2211111              234445555667788888888888777777765 45      89999999888888888


Q ss_pred             Hhhhhhhheeccccch
Q 008355          195 VASSVLVWIQMNVGWG  210 (568)
Q Consensus       195 ~~p~~~~~i~~~~g~~  210 (568)
                      +++.+.+.+.+.....
T Consensus       346 ~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        346 LASLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHHHccCCChhH
Confidence            8888888887644333

>TIGR00901 2A0125 AmpG-related permease

Probab=98.80  E-value=3.8e-08  Score=101.45  Aligned_cols=144  Identities=12%  Similarity=0.015  Sum_probs=111.9

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHH-HHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWS-GTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~-~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      ++.+++..++.++.++....+++.|+++ +|++..+.+.+..+.. +...++.+++|+++||+ |||+.+..+.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            5666666777788888999999999987 9999999998887765 56779999999999999 9999998888877776


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHH
Q 008355          110 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI  189 (568)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (568)
                      ..+..+..+...        +.+...++.+.++...++.+++.+...+...+++.|.+|+++      |++.+++++...
T Consensus       289 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~  354 (356)
T TIGR00901       289 NAGFVWLASNGH--------HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHhcCc--------ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHH
Confidence            665544311000        000000234567777788899999999999999999999999      999999987765


Q ss_pred             H
Q 008355          190 N  190 (568)
Q Consensus       190 ~  190 (568)
                      +
T Consensus       355 ~  355 (356)
T TIGR00901       355 A  355 (356)
T ss_pred             h
Confidence            5

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.79  E-value=7e-08  Score=100.92  Aligned_cols=73  Identities=8%  Similarity=0.024  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 008355           43 LAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLT  116 (568)
Q Consensus        43 ~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~  116 (568)
                      ........+.|.|+++++|++..+.+.......++..++.++.|++.||+ |||+.+.++..+..++...+.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555667788888999999999999999999999999999999999 99999999988888777776665

>TIGR00898 2A0119 cation transport protein

Probab=98.78  E-value=2.5e-08  Score=108.09  Aligned_cols=133  Identities=12%  Similarity=0.037  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHh
Q 008355           71 VTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIAL  150 (568)
Q Consensus        71 ~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  150 (568)
                      .....+...++.++.++++||+ |||+.+.++.++.+++.+++.+.   +.              ...+..++..++.++
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~---~~--------------~~~~~~~~~~~~~~~  422 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFV---PV--------------DLYFLRTALAVLGKF  422 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHc---CC--------------CchHHHHHHHHHHHH
Confidence            3445666778889999999999 99999999988888877766654   11              112334444455566


Q ss_pred             hcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          151 GTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       151 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      +.+...+....+.+|.+|++.      |++++++.+....+|+.++|.+.+ + ...++..++++.+...+++.++..+
T Consensus       423 ~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~  493 (505)
T TIGR00898       423 GITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF  493 (505)
T ss_pred             HHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            666677788899999999988      999999999999999999999888 3 3456666776666555555444433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.77  E-value=2e-07  Score=92.36  Aligned_cols=166  Identities=16%  Similarity=0.085  Sum_probs=133.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +..|.+.+---+.++.+|.+..|+|.++. +.|+|..+.|+..+...+.+....+..-++++|...+|+......+.+.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            44677777788899999999999999887 58999999999999999999999999999999886788888888888888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      |.+-+.+.   |.               +.  .+...+++|+|.|+.+|....++.+..+..+.     -++..++-+-.
T Consensus       287 G~~G~~~~---P~---------------~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgmaQg~  341 (395)
T COG2807         287 GLVGLLLA---PG---------------QL--PILWALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGMAQGV  341 (395)
T ss_pred             HHHHHHHh---hh---------------hH--HHHHHHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHHhhhh
Confidence            88777665   32               11  22224789999999999999999988765441     56667777777


Q ss_pred             HHHhHHHhhhhhhheecccc-chhhhhHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVG-WGWGFGIPAVAM  220 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~  220 (568)
                      ..+=+..||.+.|++.|..| |+.+...-+...
T Consensus       342 GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~  374 (395)
T COG2807         342 GYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT  374 (395)
T ss_pred             hHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence            77778889999999998765 887765544433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.76  E-value=1.1e-07  Score=93.78  Aligned_cols=146  Identities=16%  Similarity=0.130  Sum_probs=106.6

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHH-----------------h--CCChhhhhhhHHHHHHHHHhhhhhHHHHh
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQ-----------------L--NQGNVTASNNVTNWSGTCYITPLIGAFLA   89 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----------------l--g~s~~~~g~~~~~~~~~~~i~~~~~G~la   89 (568)
                      |..+.+....+.+.+.||+++-......+..                 .  ..+...--.=..+.+++..-+.++.|++.
T Consensus       326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence            4457777888999999999876544333221                 1  11111222223456778888999999999


Q ss_pred             hhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCC
Q 008355           90 DSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE  169 (568)
Q Consensus        90 Dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  169 (568)
                      ||+ |||+.+....+++++..+++....+ +              ......++.+|++...+    +.+++.|..|.+|.
T Consensus       406 erl-GRKkTMal~l~~f~iflfll~~c~~-r--------------n~~tvllf~arafisg~----fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-R--------------NAYTVLLFTARAFISGA----FQVAYVYTPEVYPT  465 (528)
T ss_pred             HHh-cchhHHHHHHHHHHHHHHHHHHhcC-c--------------chhHHHHHHHHHHHhch----heEEEEecCcccch
Confidence            998 9999999999999988887765521 1              01234466667665443    34788999999999


Q ss_pred             CCchhhhhhhhhhhhHHHHHHHhHHHhhhhh
Q 008355          170 TDDGEREKKSSFFNWFYLSINIGALVASSVL  200 (568)
Q Consensus       170 ~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~  200 (568)
                      ..      |+++.|.-.....+|+++.|.+.
T Consensus       466 av------RatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  466 AV------RATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hh------hhcchhhhhhHHhhhhhhhhHHH
Confidence            99      99999999999999999999988

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.74  E-value=4.3e-08  Score=103.71  Aligned_cols=176  Identities=14%  Similarity=0.045  Sum_probs=120.7

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccC-------chHHH-H
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG-------RFWTI-A  100 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~G-------rk~~~-~  100 (568)
                      +.+|.+.+..++.+.+++.+..++|.|+.+.+|++..+.|+..++..+...+..+++|.++||...       +||.+ .
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            468999999999999999999999999999999999999999999999999999999999999933       11222 1


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhh
Q 008355          101 SFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS  180 (568)
Q Consensus       101 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  180 (568)
                      ++....+++.+.+++.   +.          ++.......+.++..+.|+..++..-+    ..|.. ++.      -+.
T Consensus       338 i~~~~~ai~l~~l~~~---~~----------~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~a-pq~------a~~  393 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFT---SD----------EHRLLAVILLTIAIGLSGFNISGFYKN----HQDIA-PQH------AGF  393 (466)
T ss_pred             HHHHHHHHHHHeeeec---CC----------CcchHHHHHHHHHHHHcccchhhhHhh----hhhcc-chH------HHH
Confidence            2222333333333333   11          000011222222222233333332211    11222 333      688


Q ss_pred             hhhhHHHHHHHhHHHhhhhhhheecc---ccchhhhhHHHHHHHHHHHHHH
Q 008355          181 FFNWFYLSINIGALVASSVLVWIQMN---VGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       181 ~~~~~~~~~~ig~~~~p~~~~~i~~~---~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      .+++.+...++.+.++|.+.+.+...   ..|+..|++.++..++..+.+.
T Consensus       394 l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  394 VMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFL  444 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhee
Confidence            89999999999999999999999842   3699999999887777765443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.70  E-value=9.7e-08  Score=98.63  Aligned_cols=142  Identities=13%  Similarity=0.087  Sum_probs=106.2

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +..+.+.+..++....++.+..+++.|+++.+|.+..+.+.......+...++.+++|+++||+ |||+.+..+....+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~  303 (366)
T TIGR00886       225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAM  303 (366)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHH
Confidence            3456666666666677778888999999999999999999999999999999999999999999 999888877766666


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +..++.+...  .             ..+...+.+...+.+++.|...+...+++++.+| ++      ++++.|+.+..
T Consensus       304 ~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~  361 (366)
T TIGR00886       304 GAFLVVLGLV--S-------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLVGAI  361 (366)
T ss_pred             HHHHHHhcCC--C-------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHHHHh
Confidence            5555544311  0             0134445555555666666666677788888877 35      89999998888


Q ss_pred             HHHhH
Q 008355          189 INIGA  193 (568)
Q Consensus       189 ~~ig~  193 (568)
                      .++|+
T Consensus       362 ~~~g~  366 (366)
T TIGR00886       362 GNLGG  366 (366)
T ss_pred             ccCCC
Confidence            77763

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.66  E-value=5.9e-08  Score=104.23  Aligned_cols=166  Identities=15%  Similarity=0.063  Sum_probs=119.2

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|.++.+++..++.+...+......+.|.+..++ +....+.+.+...+...++.++.++++||+ |+|++++++.++.+
T Consensus       230 n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~  307 (473)
T PRK10429        230 NDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPV  307 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence            3666777777777777777666666655554444 455566777767788889999999999999 99999998887766


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchh-hhhhhhhhhhHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGE-REKKSSFFNWFY  186 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~  186 (568)
                      ++.+........+.              .+.+.+++.-++.|++.+...+...++++|..|.++... +.+.|..++...
T Consensus       308 ~~~~~~~~~~~~~~--------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~  373 (473)
T PRK10429        308 LSCGVLLLMGLAAP--------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQT  373 (473)
T ss_pred             HHHHHHHHHhccCc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHH
Confidence            66555433210111              345566667778889999999999999999977443110 001455788899


Q ss_pred             HHHHHhHHHhhhhhhheeccccc
Q 008355          187 LSINIGALVASSVLVWIQMNVGW  209 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~  209 (568)
                      +...+|..+++.+.|++.+..|+
T Consensus       374 ~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        374 MVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999988776665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.65  E-value=2.6e-07  Score=97.29  Aligned_cols=163  Identities=13%  Similarity=0.051  Sum_probs=116.9

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQ-LNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      ..+..++..++......+..++++.|+++. .+.+....+...+.+..+..++++++|++.||+ ++|+++.++.+..++
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~  311 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA  311 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            345555556665555556778899998653 244445556566777788899999999999999 999999888887777


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      ..++....                   .+.. .....++.|+..+.++|+..+...+..+++.      +..+ +...++
T Consensus       312 ~~ll~~~~-------------------~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s-~~l~~~  364 (410)
T TIGR00885       312 LCLGSIFA-------------------GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGA-AGLVMA  364 (410)
T ss_pred             HHHHHHHc-------------------CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhH-HHHHHH
Confidence            77666654                   1222 2455667788888889999999999988654      3223 333333


Q ss_pred             HHHhHHHhhhhhhheeccc------cchhhhhHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNV------GWGWGFGIPAVAMA  221 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~------g~~~~f~~~~~~~~  221 (568)
                      . +|+.+.|.+.|++.|..      +.+..|+++.++.+
T Consensus       365 ~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       365 I-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             H-hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            3 99999999999999854      47788887665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.65  E-value=4.2e-06  Score=86.86  Aligned_cols=136  Identities=14%  Similarity=0.196  Sum_probs=100.6

Q ss_pred             ccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehh
Q 008355          374 SLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIF  453 (568)
Q Consensus       374 ~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (568)
                      ...+-..-+++-++..+    +.+|.       +..+.+..|+.+..+-++.+..+.                    ++|
T Consensus       412 ~a~~~~gEI~~~ffs~k----lI~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~--------------------n~W  460 (618)
T KOG3762|consen  412 SALCHAGEILFYFFSFK----LIEKI-------GHVNVMYLGLACNVGRFLYYSYLQ--------------------NPW  460 (618)
T ss_pred             hhhhccchHHHHHHHHH----HHHHh-------cccceeeehhhHHHHHHHHHHHhc--------------------Cch
Confidence            33344444455555444    45553       334567788888888888777665                    778


Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccch
Q 008355          454 WQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL-TTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGH  532 (568)
Q Consensus       454 ~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~  532 (568)
                      .+++.=++.++-.+.+..+.-+|+...+|+++|.+++|+.. ..-++|-.+|++++|.+.+..                +
T Consensus       461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f----------------g  524 (618)
T KOG3762|consen  461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF----------------G  524 (618)
T ss_pred             heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee----------------h
Confidence            88888899999999999999999999999999999999988 557899999999999876543                2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Q 008355          533 LDYFYWLLTILSVLNFLVYLWIAK  556 (568)
Q Consensus       533 ~~~~f~~~a~~~~v~~v~~~~~~~  556 (568)
                      ....|.++++.|++.+++...+-+
T Consensus       525 ~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  525 ARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Confidence            235677777777777666555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.64  E-value=8.8e-08  Score=98.60  Aligned_cols=178  Identities=12%  Similarity=0.069  Sum_probs=141.9

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhC---CChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLN---QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI  104 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~  104 (568)
                      .|++|.+.+........|+..-.-.+.|.+..++   .++...|...+...+.-.+...+..++-+|+ |.|+.++++..
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            3556776666666666666665567788775443   3456688899999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008355          105 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW  184 (568)
Q Consensus       105 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (568)
                      +.++=...++++                   ++++.+.+.+.+.++-.+....+..-++++.+|++.      ..+...+
T Consensus       298 i~~iRi~~~~~~-------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v  352 (412)
T PF01306_consen  298 IMAIRIIGSGFA-------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLV  352 (412)
T ss_dssp             HHHHHHHHHHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHH
T ss_pred             HHHHHHHHHhhh-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence            988888888887                   568889999999999999998999999999999887      7778877


Q ss_pred             -HHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          185 -FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       185 -~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                       ++.+..+|..+.+.++|.+.|+.|++..|++.+.++++..+...+..
T Consensus       353 ~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  353 GFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence             67888999999999999999999999999887766655554444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.7e-07  Score=98.34  Aligned_cols=188  Identities=13%  Similarity=0.120  Sum_probs=127.9

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      +.+++.+...+..+++-.-...+-...+-++.|++..++.+++....+...+..+.+.++.||+ |||+.++++...+.+
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~  347 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAV  347 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence            3455555555555554433333444455567899999999999999999999999999999999 999999999998888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhH-HHHHHHHHHHhhcc-cCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTA-VTFVALYLIALGTG-GIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      ..+++.....+...           ...... ..+++.++..+..+ +..|..+-+.+|.+|+..      |..++++-.
T Consensus       348 ~~~~~~~~~~l~~~-----------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~  410 (485)
T KOG0569|consen  348 ALLLMSIALFLSNS-----------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVAT  410 (485)
T ss_pred             HHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHH
Confidence            88777655322210           000011 12233333222222 224778889999999998      999999988


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceee
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYR  235 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  235 (568)
                      ....+...+-......+.+.+|- +.|++.++..++..+..+...|+.|
T Consensus       411 ~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  411 AVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            88888888777777777777775 5566556555555555555555443

>PRK09669 putative symporter YagG; Provisional

Probab=98.61  E-value=1.5e-07  Score=100.25  Aligned_cols=163  Identities=13%  Similarity=0.095  Sum_probs=109.2

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |..+.++...++............+.|.+..++ +....+.+.....+...++.++.++++||+ |+|+.+..+.+..++
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~  306 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI  306 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            344555555555544443333333333333333 223334555566677778889999999999 999999988766554


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhh-hhhhhhhhhHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGER-EKKSSFFNWFYL  187 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~  187 (568)
                      ......+.   +.              .+.+.+++..++.|++.+...+..+++++|..|.++.+.. ...|..++.+.+
T Consensus       307 ~~~~~~~~---~~--------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~  369 (444)
T PRK09669        307 LSALIFFI---PP--------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLF  369 (444)
T ss_pred             HHHHHHHh---Cc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHH
Confidence            43332222   11              3566677777889999999999999999999874432111 124667788999


Q ss_pred             HHHHhHHHhhhhhhheeccccch
Q 008355          188 SINIGALVASSVLVWIQMNVGWG  210 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~  210 (568)
                      ...+|..+|+.++|.+.+..|+.
T Consensus       370 ~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        370 AIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999888777763

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=3.3e-05  Score=80.63  Aligned_cols=104  Identities=8%  Similarity=0.073  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHh
Q 008355           71 VTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIAL  150 (568)
Q Consensus        71 ~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  150 (568)
                      +++......+..++++.+.|++ |.|..+.++...+......+-.                    .|.+.++..-.+.|+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~--------------------~N~y~~yfssallG~  114 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF--------------------PNSYYLYFSSALLGF  114 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh--------------------cchHHHHHHHHHhhh
Confidence            6677788889999999999999 9999999998776665555444                    357778999999999


Q ss_pred             hcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhh
Q 008355          151 GTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV  201 (568)
Q Consensus       151 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~  201 (568)
                      |.+..+.....++++..+++.      +.+-.++.....+.+.++|..+..
T Consensus       115 Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  115 GAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             hHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhhe
Confidence            999999999999999988877      777777776677777777655443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.56  E-value=1.7e-06  Score=75.35  Aligned_cols=131  Identities=18%  Similarity=0.387  Sum_probs=92.3

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHH
Q 008355          379 LSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQ  458 (568)
Q Consensus       379 ~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  458 (568)
                      +..++..++.++    +.||.       ++++.+..+..+..++.+......                    +.+.....
T Consensus         9 ~~~~~~~~~~g~----~~d~~-------g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~   57 (141)
T TIGR00880         9 LGQLIYSPLSGL----LTDRF-------GRKPVLLVGLFIFVLSTAMFALSS--------------------NITVLIIA   57 (141)
T ss_pred             hHHHHHHhhHHH----HHhhc-------chhHHHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHH
Confidence            444555555555    44443       333456667666666665554332                    45556666


Q ss_pred             HHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHH
Q 008355          459 YFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYW  538 (568)
Q Consensus       459 ~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~  538 (568)
                      ..+.+++.....+..+.++.|..|++.|+++.++.++...+|..+++.+.+.+.+..      +|          +..|+
T Consensus        58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~----------~~~~~  121 (141)
T TIGR00880        58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL------GW----------RAPFL  121 (141)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc------ch----------HHHHH
Confidence            788889988889999999999999999999999999999999999999998875422      22          34566


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 008355          539 LLTILSVLNFLVYLWIAK  556 (568)
Q Consensus       539 ~~a~~~~v~~v~~~~~~~  556 (568)
                      +.+.++++..+..++..|
T Consensus       122 ~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880       122 FLAILALAAFILLAFLLP  139 (141)
T ss_pred             HHHHHHHHHHHHHhhcCC
Confidence            767777777666555444

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.55  E-value=1.9e-06  Score=90.09  Aligned_cols=144  Identities=12%  Similarity=-0.007  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008355           44 AYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLK  123 (568)
Q Consensus        44 ~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  123 (568)
                      .........+.|+++.+|.+..+.++......++..++.++.+++.||+ +++...  +.....++.+..........  
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~--  296 (394)
T PRK11652        222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFGV--  296 (394)
T ss_pred             HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhcc--
Confidence            3333445567788888999999999988888888888999999999998 743322  22222222222111100000  


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhe
Q 008355          124 PSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI  203 (568)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i  203 (568)
                                  .+.+.++.+.++.++|.+...|...++..|.+|+ +      ++++.++.+...++|..+++.+++.+
T Consensus       297 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        297 ------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             ------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                        2355567777888999999999999999888873 4      78899999999999999999999988


Q ss_pred             eccccchh
Q 008355          204 QMNVGWGW  211 (568)
Q Consensus       204 ~~~~g~~~  211 (568)
                      .....+..
T Consensus       358 ~~~~~~~~  365 (394)
T PRK11652        358 PQTGQFSL  365 (394)
T ss_pred             cCCchHHH
Confidence            76544443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.54  E-value=4.8e-07  Score=94.20  Aligned_cols=165  Identities=17%  Similarity=0.176  Sum_probs=130.7

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      +.|..+.+++..++...++....+....|.+..+|.+..+..+.+.....+..++.++..++++|+ |+|+++..+.++.
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~  312 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLL  312 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHH
Confidence            345566666667777777766667777787878888888888888888888888899999999999 9999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhh-hhhhhhhH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREK-KSSFFNWF  185 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~  185 (568)
                      +++.++..+.   |.              ++.+.+++..++.++|.+...+..+++++|..+-+|-....+ -|..++.+
T Consensus       313 ~i~~~~~~f~---~~--------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~  375 (467)
T COG2211         313 AVGYLLLYFT---PA--------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM  375 (467)
T ss_pred             HHHHHHHHhh---cC--------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence            9999998887   22              568888888899999999999999999999987555322222 25556778


Q ss_pred             HHHHHHhHHHhhhhhhheeccccc
Q 008355          186 YLSINIGALVASSVLVWIQMNVGW  209 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~  209 (568)
                      ....-+|..++..+.|++....|+
T Consensus       376 tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         376 TFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888888888888777777665554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=1.6e-07  Score=93.85  Aligned_cols=178  Identities=11%  Similarity=0.047  Sum_probs=135.8

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccC--chHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG--RFWTIASFSIIYCL  108 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~G--rk~~~~~~~~~~~i  108 (568)
                      ++...+.-...+.+.-..-+.++.++.+++..+..+.|....-..+.+.++..+.|.++||+ +  |-.....+++...+
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~  350 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGV  350 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence            45555555555555556678889999999997777999999999999999999999999999 9  43333444444444


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      .+....++                   +++..+++-+...+++.+...++..+......+.++..+-..-|...++...+
T Consensus       351 ~~~~iP~~-------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a  411 (464)
T KOG3764|consen  351 SSGPIPFA-------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAA  411 (464)
T ss_pred             HhchhHhh-------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHH
Confidence            44444555                   45777888888899999998888888888888766644333478889999999


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~  228 (568)
                      ..+|..+||.++|.+.+..|++|.-.+.++..++-..++.
T Consensus       412 ~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  412 FSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             HHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987776665555444433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.47  E-value=1.2e-06  Score=92.28  Aligned_cols=170  Identities=15%  Similarity=0.050  Sum_probs=112.5

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |.++...+..++....++....+.|.|+++.+|.+..+.++.......+..++..+.+++.++. ++++.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            4566666667777777788888889999998999999999988778888888888888776555 454544433344444


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +..++........              .+....+++.++.++|.+...|...+..  +.+.+.+     +|++.++++..
T Consensus       297 g~~l~~~~~~~~~--------------~~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~-----~G~a~a~~~~~  355 (413)
T PRK15403        297 GLALLIVGNLLWP--------------HVWLWSVLGTSLYAFGIGLIFPTLFRFT--LFSNNLP-----KGTVSASLNMV  355 (413)
T ss_pred             HHHHHHHHHHHcc--------------ccHHHHHHHHHHHHHHHHHHhHHHHHHH--hccCCCC-----CcHHHHHHHHH
Confidence            4444433210000              2333456777888889888877777432  2322221     78888888888


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHH
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMA  221 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~  221 (568)
                      ...+...++.+.+++... +-.++|....+...
T Consensus       356 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        356 ILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            888888888888877654 55666655554433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.47  E-value=5.3e-08  Score=99.20  Aligned_cols=143  Identities=17%  Similarity=0.231  Sum_probs=115.0

Q ss_pred             hhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceee
Q 008355          372 SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMT  451 (568)
Q Consensus       372 ~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (568)
                      .++....+..+++.|+.++    +++|       .++.+.+.+|..+.+++.+..+...                    .
T Consensus        72 ll~~vf~v~~~i~sPl~gy----Ladr-------yNR~~v~~vG~~iW~~Av~~~~fs~--------------------~  120 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGY----LADR-------YNRKRVIAVGIFIWTLAVFASGFSN--------------------H  120 (493)
T ss_pred             chhHHHHHHHHHHHHHHHH----HHhh-------cCcceEEeeHHHHHHHHHHHHHHHH--------------------H
Confidence            3455555667778888887    5666       3445688999999999988887664                    6


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccc
Q 008355          452 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRG  531 (568)
Q Consensus       452 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~  531 (568)
                      +|.+.+.=.+.|+||....|....+++|.+|++.|+...+++++...+|..+|-+.+..+.+.+.     .|        
T Consensus       121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W--------  187 (493)
T KOG1330|consen  121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW--------  187 (493)
T ss_pred             HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce--------
Confidence            77788888999999999999999999999999999999999999999999998777777655442     24        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhcee
Q 008355          532 HLDYFYWLLTILSVLNFLVYLWIAKWFTY  560 (568)
Q Consensus       532 ~~~~~f~~~a~~~~v~~v~~~~~~~~~~~  560 (568)
                        ++.|+..++++++..++..++.++-.+
T Consensus       188 --r~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  188 --RWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             --EEEEEeehHHHHHHHHHHHhhccCccc
Confidence              456888899999988888777776544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.46  E-value=2.8e-06  Score=81.96  Aligned_cols=166  Identities=12%  Similarity=0.096  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008355           44 AYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLK  123 (568)
Q Consensus        44 ~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  123 (568)
                      ..|.+..+ .+.+++.+|+|..+...+..+..++..+ .++.|.+.|++ |++.++.+|.+...+|..++.++-+-..  
T Consensus        17 t~Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i--   91 (250)
T PF06813_consen   17 TTYTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI--   91 (250)
T ss_pred             cccchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc--
Confidence            44544433 4468889999999999999888888876 58889999999 9999999999999999998877622110  


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhe
Q 008355          124 PSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI  203 (568)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i  203 (568)
                                .....+.+.+...+.+.+.+....++.....+.||. +      ||++.|+.-....+++.+-..+...+
T Consensus        92 ----------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen   92 ----------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             ----------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHH
Confidence                      124567777777777777777666666666788985 5      99999998777777776655555444


Q ss_pred             eccccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          204 QMNVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       204 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      .+.-.-...+++.....++.++..++.+
T Consensus       155 f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  155 FGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            4432233333444444444444444444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.40  E-value=1.9e-06  Score=92.56  Aligned_cols=184  Identities=10%  Similarity=-0.002  Sum_probs=129.1

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhh----hhhhHHHHHHHHHhhhhhHH----HHhhhccCchHHH--H
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVT----ASNNVTNWSGTCYITPLIGA----FLADSYMGRFWTI--A  100 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~----~g~~~~~~~~~~~i~~~~~G----~laDr~~Grk~~~--~  100 (568)
                      +..+++...+....+.-..+.++.|.++..+.+...    .+++.+.-.+...+..++..    ++.||-.+.+...  .
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            445555566667777777777888887765544222    55666666666666666654    4455421333333  6


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhh
Q 008355          101 SFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS  180 (568)
Q Consensus       101 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  180 (568)
                      +|.++.+++...+++......          +....+.+.+++..++.++|.....|...+++++..|++.      |++
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~~----------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~  417 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFAD----------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQ  417 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence            778888888777765311100          0112578889999999999999999999999999999998      999


Q ss_pred             hhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhc
Q 008355          181 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       181 ~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      .+|++.....+|..+++.+.....+..+|...|...++..++..++++..
T Consensus       418 ~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       418 MLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988877666678877776665555554444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.38  E-value=5.4e-06  Score=88.65  Aligned_cols=163  Identities=12%  Similarity=0.077  Sum_probs=99.8

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|..+.++...++..+...........|.+..+|. ....+.+...+.+...++.+++++++||+ |+|+++..+....+
T Consensus       227 Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~  304 (460)
T PRK11462        227 NDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLA  304 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence            33444444444455554444444444444444553 33445667778888889999999999999 99988775554444


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhh-hhhhhhhHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREK-KSSFFNWFY  186 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~  186 (568)
                      +...+..+.   |.              .+...+++..++.|++.+...+...++++|..+.+|-....+ .+..++...
T Consensus       305 ~~~~~~~~~---~~--------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~  367 (460)
T PRK11462        305 VISLAMFFV---PM--------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTL  367 (460)
T ss_pred             HHHHHHHHh---ch--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHH
Confidence            333333222   11              223334445566788877777777888888877432111111 244457777


Q ss_pred             HHHHHhHHHhhhhhhheeccccc
Q 008355          187 LSINIGALVASSVLVWIQMNVGW  209 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~  209 (568)
                      +...+|..+++.++|++.+..||
T Consensus       368 f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        368 FVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            88899999999888877665555

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.32  E-value=1.7e-06  Score=89.77  Aligned_cols=174  Identities=10%  Similarity=-0.043  Sum_probs=140.3

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      +.+.++..++..+..-.+.+++--+++ +++......|.+...--.+-.+.-++.+++..|+ |+-+++..++..+.+=.
T Consensus       373 ~llff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf  450 (618)
T KOG3762|consen  373 ILLFFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRF  450 (618)
T ss_pred             EEehhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHH
Confidence            344556666666666666666655554 6776777777555556667778888999999999 99999999998888887


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH-HHH
Q 008355          111 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY-LSI  189 (568)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~  189 (568)
                      +.....                   .|+|..+..-+++|+..+.++.++.+++++..|++-      |.++.++.+ ...
T Consensus       451 ~~~S~L-------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~  505 (618)
T KOG3762|consen  451 LYYSYL-------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFH  505 (618)
T ss_pred             HHHHHh-------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhc
Confidence            777776                   678889999999999999999999999999999998      999999854 455


Q ss_pred             HHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          190 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       190 ~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      .+|-.+|++++|.+.+.+|-+..|.+.++.+++.++.+....
T Consensus       506 GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  506 GLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             ccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999888888777766666555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.31  E-value=5.6e-06  Score=83.39  Aligned_cols=158  Identities=18%  Similarity=0.128  Sum_probs=120.8

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|..+...+..|+.-..--....+++.|+.+..|++..+....++.+..+.++++.++-++-.|+ ...|.+....+...
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~i  313 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAI  313 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            34455666666665555556678999999988999999999999999999999999999999999 88888887766555


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      +-++...++                   ++... +.+.++.|+..+.++|+..+...+..|++.       . .-+..-.
T Consensus       314 ll~~~~~l~-------------------~g~v~-~~~l~~ig~F~simfPTIfslal~~l~~~t-------s-~~s~~l~  365 (422)
T COG0738         314 LLLLAVALI-------------------GGVVA-LYALFLIGLFNSIMFPTIFSLALKNLGEHT-------S-VGSGLLV  365 (422)
T ss_pred             HHHHHHHHh-------------------cChHH-HHHHHHHHHHhHHHHHHHHHHHHhccCccc-------c-ccceeee
Confidence            555555555                   23333 334578899999999999999999999433       2 2223333


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhh
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFG  214 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~  214 (568)
                      ...+|+.+-|.+.|++.|..|-...+.
T Consensus       366 maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         366 MAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             eheecchHHHHHHHHHHHhhhhHHHHH
Confidence            556888889999999999999887766

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.30  E-value=5.6e-07  Score=91.57  Aligned_cols=180  Identities=14%  Similarity=0.058  Sum_probs=125.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhh--------hhhhHHHHHHHHHh-hhhhHHHHhhhccCchHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVT--------ASNNVTNWSGTCYI-TPLIGAFLADSYMGRFWTI   99 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~--------~g~~~~~~~~~~~i-~~~~~G~laDr~~Grk~~~   99 (568)
                      +.++...+..|+..+++|+.-.+...-++ ..|+.+..        ....+.+...++.+ +..+..++.|++ |||+..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            55666777788888888877666665544 34444332        22223334444443 777788899999 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhh
Q 008355          100 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS  179 (568)
Q Consensus       100 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (568)
                      +.|.+++++..+.++..    .          ++...+...+...-+.+-++..+...+.-.+.+|.||.+.      |+
T Consensus       382 ~~GF~~~~i~~~~~~~~----y----------~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv------R~  441 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGP----Y----------NQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV------RS  441 (538)
T ss_pred             HhhHHHHHHHHHHHcCC----c----------ccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH------hh
Confidence            99999888887777654    1          1100111112222223445555555667777899999999      99


Q ss_pred             hhhhhHHHHHHHhHHHhhhhhhheec-----cccchhhhhHHHHHHHHHHHHHHhc
Q 008355          180 SFFNWFYLSINIGALVASSVLVWIQM-----NVGWGWGFGIPAVAMAIAVVFFFSG  230 (568)
Q Consensus       180 ~~~~~~~~~~~ig~~~~p~~~~~i~~-----~~g~~~~f~~~~~~~~~~~~~~~~~  230 (568)
                      ++.|+.....-+|+++|.....++.+     ..|.+..|++.+...++..+..++.
T Consensus       442 t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  442 TCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             hhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            99999999999999999999999988     7789999998888777776654443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.29  E-value=1.8e-05  Score=74.93  Aligned_cols=149  Identities=19%  Similarity=0.178  Sum_probs=92.1

Q ss_pred             HHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 008355           54 NYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHP  133 (568)
Q Consensus        54 ~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  133 (568)
                      .|+.+.+|+...++|....+.....+++..+.|-++||. |||+......+    ..+++.++.                
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTK----------------  119 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITK----------------  119 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhh----------------
Confidence            456677899899999998888888899999999999999 99997655443    344444431                


Q ss_pred             CCchhHHHHHHHHHHHhhcccCccccccc-ccccCCCCCchhhhhhhhhhhh-HHHHHHHh----HHHhhhhhhheeccc
Q 008355          134 TGAQTAVTFVALYLIALGTGGIKPCVSSF-GADQFDETDDGEREKKSSFFNW-FYLSINIG----ALVASSVLVWIQMNV  207 (568)
Q Consensus       134 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig----~~~~p~~~~~i~~~~  207 (568)
                      .+++.-+++++|++-|++.....++..+. ++|.-+++.-     -....+. +.=+..+|    ++++.+.+-.+.+.+
T Consensus       120 hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-----eqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~  194 (454)
T KOG4332|consen  120 HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-----EQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF  194 (454)
T ss_pred             cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-----hHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence            12456779999999999998887776654 3554433221     0111111 22122222    233333333444444


Q ss_pred             --cchhhhhHHHHHHHHHHHHHH
Q 008355          208 --GWGWGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       208 --g~~~~f~~~~~~~~~~~~~~~  228 (568)
                        |--.+|-..+++..++..+++
T Consensus       195 slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  195 SLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHH
Confidence              455667666666666555544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.28  E-value=9.9e-06  Score=80.08  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCh--hhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008355           43 LAYYGMSTNLVNYLQKQLNQGN--VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS  120 (568)
Q Consensus        43 ~~~~~~~~~l~~yl~~~lg~s~--~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~  120 (568)
                      ..........+.+.. +.+.+.  ...++..+.+.+...++.++.|+++||+ |||+.+..+.....++.+++.+..+  
T Consensus        16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--   91 (338)
T COG0477          16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--   91 (338)
T ss_pred             HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence            333333344444444 454444  4788999999999999999999999999 9998888887765555555555411  


Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCC-CCchhhhhhhhhhhhHHH-HHHHhHHHhhh
Q 008355          121 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE-TDDGEREKKSSFFNWFYL-SINIGALVASS  198 (568)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~~~p~  198 (568)
                                     .+...+++.|+.+|++.+...+...+++.|.+|+ ++      |+...+.... ...+|..++|.
T Consensus        92 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  150 (338)
T COG0477          92 ---------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPL  150 (338)
T ss_pred             ---------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                           2477889999999999999999999999999987 44      8888888777 57888888887


Q ss_pred             hhhheecc--ccchhhhhHHHHH
Q 008355          199 VLVWIQMN--VGWGWGFGIPAVA  219 (568)
Q Consensus       199 ~~~~i~~~--~g~~~~f~~~~~~  219 (568)
                      +++.+...  .+|++.|......
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         151 LAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHH
Confidence            77665543  5788866555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.21  E-value=0.00044  Score=71.18  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=83.0

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 008355           68 SNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYL  147 (568)
Q Consensus        68 g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  147 (568)
                      +.++.+-.+-..+..+.+-++.+|+ -.+.=+.+..++.++++++.+++                   .+.+.-+++..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~-------------------~~v~~~l~Gv~l  121 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS-------------------PSVWVRLLGVVL  121 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec-------------------cchhHHHHHHHH
Confidence            4455555666677778888999988 64444455566777788877776                   456777788888


Q ss_pred             HHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecccc--chhhhhHHHHHHHHHHH
Q 008355          148 IALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG--WGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       148 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g--~~~~f~~~~~~~~~~~~  225 (568)
                      .+++.|..-...-++.+ .+++.          ..+-+..+...++++|+..-..+.. .|  .|..+++..+..++-++
T Consensus       122 as~ssg~GE~tfL~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~  189 (402)
T PF02487_consen  122 ASLSSGLGEVTFLSLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLL  189 (402)
T ss_pred             HhhhhhhhHHHHHHHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHH
Confidence            89988887777666644 44432          2455566666777777665444444 44  45566665555444444


Q ss_pred             HHHhc
Q 008355          226 FFFSG  230 (568)
Q Consensus       226 ~~~~~  230 (568)
                      .+++.
T Consensus       190 ~~f~~  194 (402)
T PF02487_consen  190 SYFFL  194 (402)
T ss_pred             HHHHh
Confidence            44433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.19  E-value=9.1e-05  Score=76.18  Aligned_cols=156  Identities=13%  Similarity=0.070  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHH-hCCChhhhh-hhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 008355           49 STNLVNYLQKQ-LNQGNVTAS-NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSC  126 (568)
Q Consensus        49 ~~~l~~yl~~~-lg~s~~~~g-~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  126 (568)
                      -+++..|+.+. .|++..++. -+.-...-.+.+.-++...++|.+ |.|++++++.+...+...++-+.          
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~----------   91 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG----------   91 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence            35788999887 999998875 344445556667888889999999 99999999988877777777777          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheec-
Q 008355          127 DKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM-  205 (568)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~-  205 (568)
                               .+...+.+..+.-|++.+.. .+..+++-...|+++      -.++.+....+.-+|-.++.+++-.+.. 
T Consensus        92 ---------~sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~  155 (412)
T PF01770_consen   92 ---------TSVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSF  155 (412)
T ss_pred             ---------CcHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     34666777777878777763 355566666666665      6667777777777787777776655543 


Q ss_pred             -cccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          206 -NVGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       206 -~~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                       ..++.....+......+++++.++.+
T Consensus       156 ~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  156 GGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence             34466666666666666666554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.18  E-value=1.8e-05  Score=80.82  Aligned_cols=166  Identities=12%  Similarity=0.097  Sum_probs=126.3

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc---cCchHHHH-HHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRFWTIA-SFSI  104 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~---~Grk~~~~-~~~~  104 (568)
                      +.++.+....+...+++-.=..++++|++ .+|.+....+++-.+..+...+.+|+.|..+||.   +||||-++ .+.+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56778888888889988888889999987 5999999999999999999999999999999986   47766555 4555


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhh-hhh
Q 008355          105 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS-FFN  183 (568)
Q Consensus       105 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~  183 (568)
                      ..+++.++.+.++.+....  +|+.-.-...-....++++..+.-++.-..+..+-++.+|....++      +.+ +.+
T Consensus       111 ~i~~~l~Lig~aaDig~~l--gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~------~~~~Ans  182 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLL--GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA------KKTRANS  182 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHh--cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh------hhhccch
Confidence            6777777777775443311  0111000112345567778888888888888999999999997766      333 999


Q ss_pred             hHHHHHHHhHHHhhhhhhhe
Q 008355          184 WFYLSINIGALVASSVLVWI  203 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i  203 (568)
                      ++.....+|+.+|..++++.
T Consensus       183 ~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hHHHHHHhcceeeeeccccc
Confidence            99999999999998877643

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.17  E-value=3.1e-05  Score=78.77  Aligned_cols=168  Identities=17%  Similarity=0.206  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 008355           38 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTA  117 (568)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~  117 (568)
                      .++..+++..==..+=+|--+.+|++..+....+.....+..++....|++..|-.++++....|....+++..+..++.
T Consensus       217 l~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~  296 (403)
T PF03209_consen  217 LFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG  296 (403)
T ss_pred             HHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            33334443333344556777789999999999999999999999999999988555899988899888888887766653


Q ss_pred             hccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhh
Q 008355          118 SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVAS  197 (568)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p  197 (568)
                      ..                .+.+.+..+.++.|+|.|.+....-+.+-|+.++++      .|..+|.+.....++..+|-
T Consensus       297 ~~----------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~  354 (403)
T PF03209_consen  297 PL----------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGT  354 (403)
T ss_pred             hc----------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHH
Confidence            22                357889999999999999999999999999998887      88999999999988888888


Q ss_pred             hhhhheec----------cccchhhhhHHHHHHHHHHHHH
Q 008355          198 SVLVWIQM----------NVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       198 ~~~~~i~~----------~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      .++|.+.|          ..+|..+|.+-++..++++.+.
T Consensus       355 ~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  355 FLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            88876644          2347777777776666665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.13  E-value=4.6e-08  Score=104.32  Aligned_cols=185  Identities=14%  Similarity=0.059  Sum_probs=111.0

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG  109 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~  109 (568)
                      .+...+....+.++..+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||+.++.+.++.++.
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            344444445555444443444444455556676665  2223344566667788888999999 9999999998887777


Q ss_pred             HHHHH-HhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          110 MTLLT-LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       110 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      .+.++ .....+.          .+...+...+....+.......+..+....+.+|.+|.+.      |.++.++.+..
T Consensus       330 ~~~~~~~~~~~~~----------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~  393 (451)
T PF00083_consen  330 SLILGIIFFLGVS----------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAV  393 (451)
T ss_pred             ccccccccccccc----------cccccccccceeeeeccccccccccccccccccccccccc------ccccccccccc
Confidence            76664 1100000          0000112211111111111222334666788899999999      99999999888


Q ss_pred             HHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCce
Q 008355          189 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRL  233 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  233 (568)
                      ..+++.++|.+...+.+..+-...|++.+...++..+..++..|+
T Consensus       394 ~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE  438 (451)
T PF00083_consen  394 GRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE  438 (451)
T ss_pred             ccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence            899999999988888877763445555555444454444444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.13  E-value=1.7e-05  Score=61.80  Aligned_cols=69  Identities=19%  Similarity=0.081  Sum_probs=58.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           35 LGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      -...++...+...+.++++.|+++ .|++..++|.+.++..+...+++++.|+++||+ |+++.+..+..+
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            344555666666788999999984 999999999999999999999999999999999 888888776554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.11  E-value=2.1e-05  Score=83.49  Aligned_cols=205  Identities=12%  Similarity=0.032  Sum_probs=143.0

Q ss_pred             cCCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHH-HhCCChh-----h-----hhhhHHHHHHHHHhhhhhHHHHhhhc
Q 008355           24 KTGNWKACRFILGNECCERLAYYGMSTNLVNYLQK-QLNQGNV-----T-----ASNNVTNWSGTCYITPLIGAFLADSY   92 (568)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~-----~-----~g~~~~~~~~~~~i~~~~~G~laDr~   92 (568)
                      .++.+|.++.+++.+++..++++.+..+.+.|+-+ .++-++.     +     ..+....+.+...+.+++--++.+|+
T Consensus       253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~  332 (477)
T TIGR01301       253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW  332 (477)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34457899999999999999999999999999875 3443221     1     22444455666667777788899999


Q ss_pred             cCc-hHHHHHHHHHHHHHHHHHHHhhhccC-CCC-CCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCC
Q 008355           93 MGR-FWTIASFSIIYCLGMTLLTLTASVSG-LKP-SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE  169 (568)
Q Consensus        93 ~Gr-k~~~~~~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  169 (568)
                       |+ |++..++.++.+++.....+.++++. ... ..+++..+......+..++...+.|+..+.......+++++..++
T Consensus       333 -g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~  411 (477)
T TIGR01301       333 -GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN  411 (477)
T ss_pred             -ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence             85 67768887888888877765533211 000 000011111112235666777888999999999999999999986


Q ss_pred             CCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecccc--chhhhhHHHHHHHHHHHHHHhcCce
Q 008355          170 TDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG--WGWGFGIPAVAMAIAVVFFFSGSRL  233 (568)
Q Consensus       170 ~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~  233 (568)
                      +..+    .|..+|+++.++.+..++..+..|.+.+.+|  -.+.+.++++..+++.+..+...|+
T Consensus       412 ~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       412 LGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             cCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            4411    6999999999999999999988887655554  4567777788777777766665553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.11  E-value=1.1e-05  Score=85.93  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=110.0

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhh----ccCchHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS----YMGRFWTIASFSII  105 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr----~~Grk~~~~~~~~~  105 (568)
                      .+|...+..++.....|++..|+|.|+++..|+|..+++.+...+.++..++.+++|+++||    . .+|..+.....+
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~  352 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCL  352 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence            57999999999999999999999999998677999999999999999999999999999999    5 666666665554


Q ss_pred             HH-HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008355          106 YC-LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW  184 (568)
Q Consensus       106 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (568)
                      .. ++.+.+...+                   +......+.+....+.....++...-..+...++.+     |-+..+.
T Consensus       353 ~~~~g~~~l~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~~~~~~~  408 (495)
T KOG2533|consen  353 YAIIGAISLLAAA-------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----ALTTVSA  408 (495)
T ss_pred             HHHHHHHHHHhhc-------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----hHHHHhh
Confidence            44 3334433331                   122222222233344444445555556666655542     5555556


Q ss_pred             HHHHHHHhHHHhhhh-hhheeccccchhhhhHHH
Q 008355          185 FYLSINIGALVASSV-LVWIQMNVGWGWGFGIPA  217 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~-~~~i~~~~g~~~~f~~~~  217 (568)
                      +..+.+.++.++|.+ -+.....++|...|....
T Consensus       409 ~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  409 IIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             hhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            555555555554443 445555678998885443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.09  E-value=3.7e-05  Score=83.14  Aligned_cols=149  Identities=13%  Similarity=-0.013  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH--HhCCChh------hhhhhHHHHHHHHHhhhhhH----HHHhhhccCchHHHHHHH
Q 008355           36 GNECCERLAYYGMSTNLVNYLQK--QLNQGNV------TASNNVTNWSGTCYITPLIG----AFLADSYMGRFWTIASFS  103 (568)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~~------~~g~~~~~~~~~~~i~~~~~----G~laDr~~Grk~~~~~~~  103 (568)
                      +..++....+|.+..-++.++..  ..+.+..      ..+++.+.-.+...+..++.    +++.||+ +..+.+.+|.
T Consensus       279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~  357 (500)
T PRK09584        279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGM  357 (500)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHH
Confidence            33445566666666666666543  1112211      14455555555555666666    5556665 6678888999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      ++.+++.+.++.+...+.          ++...+.+.++...++.++|.+...|...+++.+..|++.      |++.+|
T Consensus       358 ~l~~l~f~~l~~~~~~~~----------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g  421 (500)
T PRK09584        358 VLCSGAFLVLPLGAKFAN----------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMG  421 (500)
T ss_pred             HHHHHHHHHHHHHHHhcC----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHH
Confidence            999999888877643221          0112345678889999999999999999999999999998      999999


Q ss_pred             hHHHHHHHhHHHhhhhhh
Q 008355          184 WFYLSINIGALVASSVLV  201 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~  201 (568)
                      .+.+...+|+.++..+..
T Consensus       422 ~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        422 SWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            998888888877766654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.02  E-value=3.4e-05  Score=83.07  Aligned_cols=149  Identities=11%  Similarity=0.008  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChh----hhhhhHHHHHHHHHhhhhhHHHHhhhccCchHH-------HHHHHHHH
Q 008355           38 ECCERLAYYGMSTNLVNYLQKQLNQGNV----TASNNVTNWSGTCYITPLIGAFLADSYMGRFWT-------IASFSIIY  106 (568)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~----~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~-------~~~~~~~~  106 (568)
                      ..+....+......++.|.++..+.+..    ...++.+...+...+..|+.|++.||+ |+|+.       +.+|.++.
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~  356 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC  356 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence            4445555555657778888754333210    123333444556667888899999999 98873       67777777


Q ss_pred             HHHHHHHHHhhh-ccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          107 CLGMTLLTLTAS-VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       107 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      +++.+.++.... ...          .+...+.+.+....++.|+|.+...|...+++.+..|++.      ++.+++++
T Consensus       357 ~~~~~~~~~~~~~~~~----------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~  420 (489)
T PRK10207        357 SLGFLTAAAAGMWFAD----------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMW  420 (489)
T ss_pred             HHHHHHHHHHHHhhcC----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHH
Confidence            777655432110 000          0011346667788889999999999999999999999998      99999999


Q ss_pred             HHHHHHhHHHhhhhhhhe
Q 008355          186 YLSINIGALVASSVLVWI  203 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i  203 (568)
                      ++..++|..+|..++...
T Consensus       421 ~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999998877544

>TIGR00788 fbt folate/biopterin transporter

Probab=97.91  E-value=1.1e-05  Score=86.53  Aligned_cols=136  Identities=10%  Similarity=-0.058  Sum_probs=107.5

Q ss_pred             HHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCc
Q 008355           57 QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGA  136 (568)
Q Consensus        57 ~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (568)
                      ++.+|+++.+.|.+.....++..++....+++.+|+ +.|+++.++.++.+++.............         .....
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~---------~~gi~  349 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL---------AFGIS  349 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc---------ccCCC
Confidence            457899999999999999999999999999999999 99999999988888877554321100000         00001


Q ss_pred             hhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecccc
Q 008355          137 QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG  208 (568)
Q Consensus       137 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g  208 (568)
                      +.+.+...-++.+++.+....+...++.+..|++.      +++.++++....++|..+++.+++.+.+..|
T Consensus       350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22334455667788888888888999999999998      9999999999999999999999999988777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.87  E-value=0.0047  Score=64.70  Aligned_cols=187  Identities=10%  Similarity=-0.111  Sum_probs=103.2

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM  110 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~  110 (568)
                      .+.+....++.+..--..-.-.+.|+.+-+.-+.--.+.....-.+..+++.+..|.+.||. -|.+++..+.+..-+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence            34555555555555555555567788776554544455555666778888999999999999 99998887765433222


Q ss_pred             H----HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHH-HHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          111 T----LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVA-LYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       111 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .    ++......+..        -+........+++. .++..+..=.......+.=-|+...=..++...+.+..+..
T Consensus        83 ~~s~~~~~~l~~~~~~--------~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~m  154 (432)
T PF06963_consen   83 AASCALFLLLLSYPSS--------SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATM  154 (432)
T ss_pred             HHHHHHHHHHHhCCcc--------ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHH
Confidence            2    22211111110        00001112222222 22222222221222233334443321111222366677777


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHH
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      .=.-.+--+++|++.|.+....+......+.+...++++..
T Consensus       155 RRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  155 RRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            77778889999999999988888777666666555555543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.84  E-value=0.0027  Score=63.65  Aligned_cols=159  Identities=12%  Similarity=0.093  Sum_probs=91.2

Q ss_pred             CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhh-----hccCchHHH
Q 008355           25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLAD-----SYMGRFWTI   99 (568)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laD-----r~~Grk~~~   99 (568)
                      ++..+++..+++..++...- +++...+|..++ ..|.|-++.+...  +...-.-..++...+.|     |+ ||||.-
T Consensus        27 ~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS--~ay~P~sLKllWaPiVDs~y~k~~-GrrksW  101 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFS--FAYWPFSLKLLWAPIVDSVYSKRF-GRRKSW  101 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhh--hhhhHHHHHHHHHhhhHHHHHHhh-ccccce
Confidence            34456677777777666555 466666665555 5677766655322  22222344667777888     98 988864


Q ss_pred             HH-HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC-CCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhh
Q 008355          100 AS-FSIIYCLGMTLLTLTASVSGLKPSCDKDACHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREK  177 (568)
Q Consensus       100 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (568)
                      ++ +..+  +|..+..++--++.       ..-.+ ..++...+....++.-+..+.--.++-...-.+..+++      
T Consensus       102 vvp~q~l--lG~~mllLs~~v~~-------~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~------  166 (510)
T KOG3574|consen  102 VVPCQYL--LGLFMLLLSYLVDR-------GLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN------  166 (510)
T ss_pred             eeehHHH--HHHHHHHHhhCCCc-------ccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh------
Confidence            43 2223  33333333311111       00111 22344434344455556666555566666666777777      


Q ss_pred             hhhhhhhHHHHHHHhHHHhhhhhhhe
Q 008355          178 KSSFFNWFYLSINIGALVASSVLVWI  203 (568)
Q Consensus       178 r~~~~~~~~~~~~ig~~~~p~~~~~i  203 (568)
                      .|-+.....++.+.|..++..+.-.+
T Consensus       167 lgyaST~q~Vg~~~GyfL~~~ifLaL  192 (510)
T KOG3574|consen  167 LGYASTCQSVGQTAGYFLGNVVFLAL  192 (510)
T ss_pred             cCchhHHHHHHHhhhHHhhcceeeEe
Confidence            88888888888899998887665444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.82  E-value=0.00014  Score=77.75  Aligned_cols=115  Identities=12%  Similarity=0.116  Sum_probs=78.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChh--
Q 008355          407 TQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDA--  484 (568)
Q Consensus       407 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~--  484 (568)
                      ++++.+.+|.++.+++.+.++...                   .+.........+..+|.++..+...+++.|++|++  
T Consensus        74 Grrr~iliG~il~~lg~lll~~~~-------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~  134 (493)
T PRK15462         74 GNRMAVMLGALLMAIGHVVLGASE-------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP  134 (493)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhh-------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc
Confidence            334567888888888876554221                   01122333444555666666677788999999975  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008355          485 MRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAK  556 (568)
Q Consensus       485 ~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~  556 (568)
                      .|..+.+++....++|+.++|.+.+.+.+..      ||          +..|.+.++..+++.+.++...+
T Consensus       135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~F~iaaigm~l~li~~~~~~~  190 (493)
T PRK15462        135 RRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AMGFGLAAVGMIAGLVIFLCGNR  190 (493)
T ss_pred             cccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HHHHHHHHHHHHHHHHHHHHhhh
Confidence            7999999999999999999999999886533      34          45666666666666655554333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.78  E-value=0.00034  Score=75.76  Aligned_cols=154  Identities=8%  Similarity=-0.009  Sum_probs=111.0

Q ss_pred             CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChh---hhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHH-H
Q 008355           25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNV---TASNNVTNWSGTCYITPLIGAFLADSYMGRFWTI-A  100 (568)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~-~  100 (568)
                      .++.|.+...++..++....||.+..+.|......++-+..   ..++......++..++.++.|.+.-++ +|-|.. +
T Consensus       306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li  384 (599)
T PF06609_consen  306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI  384 (599)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence            34456777777888888888999888889888877766553   567777778888888899999999988 765554 5


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhh
Q 008355          101 SFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS  180 (568)
Q Consensus       101 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  180 (568)
                      ++.+++++++..++...  |               +|....+...++.|+|.|...........-..|+++      -+.
T Consensus       385 ~~~~~~ta~~Gama~~~--~---------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~  441 (599)
T PF06609_consen  385 FGSVLMTAFCGAMAAVR--P---------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGT  441 (599)
T ss_pred             HHHHHHHHHHHHHHHcc--C---------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHH
Confidence            66556655544444331  1               233344566778889988887777666666677766      888


Q ss_pred             hhhhHHHHHHHhHHHhhhhhhh
Q 008355          181 FFNWFYLSINIGALVASSVLVW  202 (568)
Q Consensus       181 ~~~~~~~~~~ig~~~~p~~~~~  202 (568)
                      +.++....-.+|+.+|..+...
T Consensus       442 a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  442 ATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHH
Confidence            8888888888888877766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.74  E-value=0.012  Score=62.38  Aligned_cols=160  Identities=12%  Similarity=0.024  Sum_probs=97.3

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----hhhhhhHHHHHHHHHhh-hhhHHHHhhhccCchHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGN-----VTASNNVTNWSGTCYIT-PLIGAFLADSYMGRFWTIAS  101 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~-----~~~g~~~~~~~~~~~i~-~~~~G~laDr~~Grk~~~~~  101 (568)
                      +|.++...+.-++.-+.|+.+.+     +++.+..+.     ....++-....+...+. .++-+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            34456666666676666665543     556665532     34555555444444433 78899999999 99999988


Q ss_pred             HHHHHHHHHHHHHHhhhccCCC---C--CCCCCCCCCCCc---------hhH---HHHHHHHHHHhhcccCcc-cccccc
Q 008355          102 FSIIYCLGMTLLTLTASVSGLK---P--SCDKDACHPTGA---------QTA---VTFVALYLIALGTGGIKP-CVSSFG  163 (568)
Q Consensus       102 ~~~~~~i~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~---------~~~---~~~~~~~l~g~g~g~~~~-~~~~~~  163 (568)
                      ....+.....++++.- .|.-.   +  .+|+.. ..-+.         +.|   .+++.   ..+-.....+ ..++++
T Consensus        80 ~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~-~~~~~~~~~~i~~~~~W~~~~FYv~---~elw~~~vvS~lFW~fa  154 (472)
T TIGR00769        80 VISPFLGFFALFAFVI-YPLSDLLHPTALADKLL-SLLPPGFMGFIAILRIWSFALFYVM---AELWGSVVLSLLFWGFA  154 (472)
T ss_pred             HHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHH-hhcchhhHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            8777777777666541 12100   0  000000 00000         011   22222   1221122222 667899


Q ss_pred             cccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhee
Q 008355          164 ADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ  204 (568)
Q Consensus       164 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~  204 (568)
                      +|.+..+|      -.|.++++..+.|+|..+++.+..++.
T Consensus       155 ndi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       155 NQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888      889999999999999999999888765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.74  E-value=8e-05  Score=82.69  Aligned_cols=133  Identities=11%  Similarity=0.074  Sum_probs=91.3

Q ss_pred             hhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-----------
Q 008355          371 ASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKR-----------  439 (568)
Q Consensus       371 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-----------  439 (568)
                      +.+.+...++..+..+++++    +.+|.       ++++.+.+|.++++++.+++++.+-....+...           
T Consensus        71 G~i~s~~~i~~~~~~i~v~~----~~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~  139 (633)
T TIGR00805        71 GLINGSYEIGNLLLIIFVSY----FGTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS  139 (633)
T ss_pred             eeeeehhhHHHHHHHHHHHH----hhccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence            34455555666666666665    45553       334578889999999988877664211000000           


Q ss_pred             --cCcCC----------------CCCc--eeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHH
Q 008355          440 --NNYYD----------------IETI--PMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAV  499 (568)
Q Consensus       440 --~~~~~----------------~~~~--~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l  499 (568)
                        ..++.                ++..  ...+..+++.-++.|+|.+...+...+++.|.+|++.|+.+.|+++....+
T Consensus       140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i  219 (633)
T TIGR00805       140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF  219 (633)
T ss_pred             cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence              00000                0000  113445666788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 008355          500 GNYLSTLLVTIVTKV  514 (568)
Q Consensus       500 g~~lg~~l~~~i~~~  514 (568)
                      |..+|+.+++.+.+.
T Consensus       220 G~~lG~llgg~l~~~  234 (633)
T TIGR00805       220 GPAFGYLLGSFCLQI  234 (633)
T ss_pred             hhHHHHHHHHHHHhc
Confidence            999999999987654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.67  E-value=0.001  Score=69.73  Aligned_cols=85  Identities=11%  Similarity=0.114  Sum_probs=73.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhh
Q 008355          406 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM  485 (568)
Q Consensus       406 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~  485 (568)
                      .+.++.+.++++..++..++.++..                    +...+.+.-+++|++++... +...++++.+|++.
T Consensus        89 lG~K~vL~l~~l~Wsl~t~L~~fa~--------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE  147 (511)
T TIGR00806        89 LRYKPVLVLQALSFVCVWLLLLLGT--------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR  147 (511)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH
Confidence            3444578888888888888777665                    56677778899999999999 89999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008355          486 RSLCSALSLTTVAVGNYLSTLLVTIV  511 (568)
Q Consensus       486 rg~~~g~~~~~~~lg~~lg~~l~~~i  511 (568)
                      |++++|+.+....+|..+++.+++.+
T Consensus       148 R~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       148 YQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999983

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.63  E-value=0.00045  Score=75.07  Aligned_cols=185  Identities=13%  Similarity=0.019  Sum_probs=103.0

Q ss_pred             CcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           27 NWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      .+|.....++...+.+++-+-...+-...+-+..|.+... .+...+..+...++..++.++.||+ |||+.++.+...+
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m  369 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGM  369 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHH
Confidence            3444555555555555544333333333334556666443 4445556777778888889999999 9999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      +++.++++........      +.-.........+....+.......+..|..+.+.+|.+|.+-      |+++.++-.
T Consensus       370 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~~s~~~  437 (513)
T KOG0254|consen  370 SICLVILAVVGVFALY------YPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKGASLAV  437 (513)
T ss_pred             HHHHHHHHHHHHHhcc------CCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------HhhhHHHHH
Confidence            9999888765221110      0000011112222222222233333344566678899999998      999888866


Q ss_pred             HHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHH
Q 008355          187 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~  225 (568)
                      ....+...+-......+.+..++...|...+....+...
T Consensus       438 ~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  438 AVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            555555544333333333333334455444444433433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.42  E-value=0.0025  Score=56.96  Aligned_cols=105  Identities=12%  Similarity=0.167  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 008355           69 NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLI  148 (568)
Q Consensus        69 ~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  148 (568)
                      .-+++......+..++.+.+.+++ |.|+.+++|.+.+++.......                    .+.+.++.+-++.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~--------------------~~~~~l~~~s~l~   99 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY--------------------PNSYTLYPASALL   99 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHH
Confidence            334555666777788888999999 9999999998877765544332                    3577788999999


Q ss_pred             HhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhh
Q 008355          149 ALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVL  200 (568)
Q Consensus       149 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~  200 (568)
                      |+|.+..+++...++.+..++++      |++-.+++....+.+.++|.++.
T Consensus       100 G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  100 GFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             hhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887776      88888887777777777665544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PTZ00207 hypothetical protein; Provisional

Probab=97.39  E-value=0.0025  Score=69.47  Aligned_cols=119  Identities=7%  Similarity=0.035  Sum_probs=83.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhh
Q 008355          406 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM  485 (568)
Q Consensus       406 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~  485 (568)
                      .++++.+.+|.++.+++.+..+.....              ....+.+.+.+..++.|+|.+...+.....+.+.+| +.
T Consensus        88 ~G~R~vllig~ll~~iG~ll~ala~~~--------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~  152 (591)
T PTZ00207         88 LGPRPIFVLSMTVFCLGTLLFALTFQE--------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN  152 (591)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHhcc--------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence            455568899999999998887765211              011256666777788899999888888888899887 67


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008355          486 RSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAK  556 (568)
Q Consensus       486 rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~  556 (568)
                      ||.+.|+......+|..+.+.+...+...       +|          ..+|++++++.++..++.+.+.+
T Consensus       153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-------~~----------~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        153 RGAVVAIMKTFTGLGSAILGSIQLAFFSD-------NT----------SAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hH----------HHHHHHHHHHHHHHHHHHHhhee
Confidence            99999999999999997644444333210       12          24567777777776665555544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.20  E-value=0.0026  Score=65.42  Aligned_cols=186  Identities=13%  Similarity=0.019  Sum_probs=116.3

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|+..+++++..+.-..+|++.+.+-.-+ ..-|.+...+|.......++++++..++|.++||...-|.++.+......
T Consensus       265 n~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~  343 (480)
T KOG2563|consen  265 NRQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFAL  343 (480)
T ss_pred             CccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            35666777777777677776665554323 34677778899999999999999999999999999555666666666555


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++...+......+               ...+.++.--.+.|+..-+..|.---+..|..-|..      -+...|+.++
T Consensus       344 v~~~~l~~~t~~~---------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGll~~  402 (480)
T KOG2563|consen  344 VGTLMLLTCTLFL---------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGLLNL  402 (480)
T ss_pred             HHHHHHHHhhccC---------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------CcccceeEEe
Confidence            5532222211111               223445555567777777888888888888754444      3556677666


Q ss_pred             HHHHhHHHhhhhhhheecccc---chh-hhhHHHHHHHHHHHHHHhcCceee
Q 008355          188 SINIGALVASSVLVWIQMNVG---WGW-GFGIPAVAMAIAVVFFFSGSRLYR  235 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g---~~~-~f~~~~~~~~~~~~~~~~~~~~~~  235 (568)
                      ..++-+.+=..+-+...+..+   |.. .-+.......+...+..+.++.++
T Consensus       403 ~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~  454 (480)
T KOG2563|consen  403 SGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR  454 (480)
T ss_pred             ehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence            666666665566666666655   333 223333344444444445555443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.04  E-value=0.0055  Score=48.23  Aligned_cols=68  Identities=12%  Similarity=-0.007  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 008355           47 GMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLT  116 (568)
Q Consensus        47 ~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~  116 (568)
                      ..++.+| .++++.++|..+.|++.+...+++.++.+...++.++. .+++.+..+.+...+.++.+++.
T Consensus        10 ayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   10 AYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445444 68889999999999999999999999999999999997 88999999999999999999887

Note that many members are hypothetical proteins.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.92  E-value=0.0064  Score=61.24  Aligned_cols=143  Identities=10%  Similarity=0.090  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCc-hHHHHHHHHHHHHHHHHHHHh
Q 008355           38 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR-FWTIASFSIIYCLGMTLLTLT  116 (568)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Gr-k~~~~~~~~~~~i~~~~~~~~  116 (568)
                      .++....+.+.....+.+..+.+|+++.+.|-+.+...+...+.+..-+...||..|. +-.+..+++.+.-..++...+
T Consensus       270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~  349 (451)
T KOG2615|consen  270 YFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA  349 (451)
T ss_pred             HHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc
Confidence            3333333333333334333567999999999999888888888888888888888444 334444444444444455554


Q ss_pred             hhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHh
Q 008355          117 ASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVA  196 (568)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  196 (568)
                                         .....++++..+-.+..+...++...++....|.++      ||.+.|+......++-.+|
T Consensus       350 -------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~Sl~alaRaiG  404 (451)
T KOG2615|consen  350 -------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRSLGALARAIG  404 (451)
T ss_pred             -------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHHHHHHHHHhh
Confidence                               235668888888899999999999999999999998      9999999999999999999


Q ss_pred             hhhhhheec
Q 008355          197 SSVLVWIQM  205 (568)
Q Consensus       197 p~~~~~i~~  205 (568)
                      |+++|.+..
T Consensus       405 Plv~g~i~~  413 (451)
T KOG2615|consen  405 PLVSGVIFS  413 (451)
T ss_pred             hhhhheeEE
Confidence            999988765

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.80  E-value=0.013  Score=63.89  Aligned_cols=113  Identities=16%  Similarity=0.265  Sum_probs=86.5

Q ss_pred             hhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhh
Q 008355          392 IVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFI  471 (568)
Q Consensus       392 ~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~  471 (568)
                      ..++.+|.+||       ..+..++++..++-+..+...                    +++..++.=++.|++......
T Consensus       138 ~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a~--------------------~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  138 FGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFAP--------------------NYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             heehHhhcccH-------HHHHHHHHHHHHHHHHHHHhC--------------------cHHHHHHHHHHHHhhccchhH
Confidence            34466664443       467777777777766555443                    777888888999999999999


Q ss_pred             hhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 008355          472 GQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLV  550 (568)
Q Consensus       472 ~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~  550 (568)
                      ..+.+..|..+++.|+.+..+ ......++.+++.+.+++..        +|          +..+++..+.+++.++.
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 87888888888888887764        45          45667766666666554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.79  E-value=0.011  Score=62.22  Aligned_cols=157  Identities=16%  Similarity=0.148  Sum_probs=99.3

Q ss_pred             hccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeeh
Q 008355          373 LSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI  452 (568)
Q Consensus       373 ~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (568)
                      +.+...++..+..|..+.    ...|.      .+..+.+..|.+++.++.+++..++..               .....
T Consensus        76 viaa~slg~~i~~liF~~----Ws~k~------~~~k~Pli~s~ii~~~g~llY~~l~~~---------------~~~~~  130 (488)
T KOG2325|consen   76 VIAASSLGHAIFSLIFGI----WSNKT------GSVKKPLIVSFLIAIIGNLLYLALAYV---------------PNGVK  130 (488)
T ss_pred             HHHHHHHHHHhcchhhcc----ccccc------CCcccCHHHHHHHHHHHHHHHHHHHhc---------------ccchH
Confidence            334455666666666554    22222      122456889999999998888666532               11145


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccch
Q 008355          453 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGH  532 (568)
Q Consensus       453 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~  532 (568)
                      +++....++.|+|.+.... .-.|+++..-.+.|.++++..+....+|.++||.+...+......+.  .+.+. ..-+.
T Consensus       131 y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~--~i~~~-~~~n~  206 (488)
T KOG2325|consen  131 YLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF--MILPG-LIFNM  206 (488)
T ss_pred             HHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce--EEcCc-ceEEe
Confidence            6677778888888765444 57888887777778888887777777888888777766544322111  22232 23333


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008355          533 LDYFYWLLTILSVLNFLVYLWIAKWF  558 (568)
Q Consensus       533 ~~~~f~~~a~~~~v~~v~~~~~~~~~  558 (568)
                      |...-|+.+.+.++..++..+..+|.
T Consensus       207 YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  207 YTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHHhheeec
Confidence            44445777888888887777777654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.67  E-value=0.0042  Score=65.84  Aligned_cols=128  Identities=18%  Similarity=0.179  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHH-HHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 008355           51 NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGA-FLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKD  129 (568)
Q Consensus        51 ~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G-~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  129 (568)
                      .++.|+...++++..+.+...+..+....+++++.. .+.-.+ |-|+.+..|+....+...+.+++             
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~~~~~~~~~~af~-------------  328 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLLSEFLQLLLFAFA-------------  328 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHHHHHHHHHHHHHh-------------
Confidence            345778888999999999999999999999988887 666666 99999999999999999999988             


Q ss_pred             CCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheec
Q 008355          130 ACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM  205 (568)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~  205 (568)
                            .+.++++....+.++ .+...|...++++.+.++++      +|+.+++....-.+.++++|.+-+.+..
T Consensus       329 ------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  329 ------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             ------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence                  456767777655544 45677899999999999999      9999999999999999999998876643

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.51  E-value=0.00065  Score=73.67  Aligned_cols=173  Identities=14%  Similarity=0.130  Sum_probs=0.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHH-HHHhhhhhHHHHhhhc-cCchHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSG-TCYITPLIGAFLADSY-MGRFWTIASFSIIY  106 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~-~~~i~~~~~G~laDr~-~Grk~~~~~~~~~~  106 (568)
                      +......+....+.+..-++.+++|-|++.++++++.++.++.++..+ +..++.+++|++..|+ ++.|+++....+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            455677788888888899999999999999999999999999887655 6668899999999998 33455544443333


Q ss_pred             HHHHHHHH---H--------h-hhccC-----------CCCCCC-----------CCCCCCC-CchhHHHHHHHHHHHhh
Q 008355          107 CLGMTLLT---L--------T-ASVSG-----------LKPSCD-----------KDACHPT-GAQTAVTFVALYLIALG  151 (568)
Q Consensus       107 ~i~~~~~~---~--------~-~~~~~-----------~~~~~~-----------~~~~~~~-~~~~~~~~~~~~l~g~g  151 (568)
                      .+..+...   +        + -..+.           ....|.           ...|+.+ ..+...+++..++..+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            33322210   0        0 00011           000110           1123332 34555666666665555


Q ss_pred             cccCcccccccccccCCCCCchhhhhhhhhhhhHHH-HHHHhHHHhhhhhhheeccc
Q 008355          152 TGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL-SINIGALVASSVLVWIQMNV  207 (568)
Q Consensus       152 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~~~p~~~~~i~~~~  207 (568)
                      .+..........-+.+|+++      |..+.|+..+ .--+|.+=||++.|.+.|..
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            55555555566668889888      9999999554 55778899999999998853

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK03612 spermidine synthase; Provisional

Probab=96.28  E-value=0.079  Score=57.39  Aligned_cols=173  Identities=14%  Similarity=0.081  Sum_probs=95.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHH-HHHHH-HHHHH
Q 008355           34 ILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIAS-FSIIY-CLGMT  111 (568)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~-~~~~~-~i~~~  111 (568)
                      +.+..++..++-.+.-..+.-.+...+|-+....+.+++++..+..++..++|+++++. -|+....- +..+. .+...
T Consensus        19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~   97 (521)
T PRK03612         19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSAL   97 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555566666677898999999999999999999999999887544 23322111 11111 11111


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      +.........              .....++...++.++-.|+..|....+..+... ++      -++..|-.|....+
T Consensus        98 ll~~~~~~~~--------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntl  156 (521)
T PRK03612         98 ILYAAFAFQG--------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYL  156 (521)
T ss_pred             HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhH
Confidence            1111100000              011223334445677777777666655544222 12      35567777888888


Q ss_pred             hHHHhhhhhhheec-cccch-hhhhHHHHHHHHHHHHHH
Q 008355          192 GALVASSVLVWIQM-NVGWG-WGFGIPAVAMAIAVVFFF  228 (568)
Q Consensus       192 g~~~~p~~~~~i~~-~~g~~-~~f~~~~~~~~~~~~~~~  228 (568)
                      |+++|.++.+++.- ..|-. ..+.++.+..++++++.+
T Consensus       157 Ga~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~  195 (521)
T PRK03612        157 GALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW  195 (521)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99888888876554 56744 434433333344433333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.97  E-value=0.047  Score=56.60  Aligned_cols=125  Identities=14%  Similarity=0.092  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChh---hH
Q 008355          410 QRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDA---MR  486 (568)
Q Consensus       410 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~---~r  486 (568)
                      +.+.+|.++..+|.+++.+....           +......+...+.+++.+.++|.++.=|....+..|+.+++   .|
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~-----------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~   70 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIP-----------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR   70 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTS-----------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhc-----------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence            35778888888888875554421           00011234456778888999999999999999999999977   34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceec
Q 008355          487 SLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK  561 (568)
Q Consensus       487 g~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~  561 (568)
                      ......+....++|..++..+.+++.+..      +|          ...|.+.++..+++.+.++.-.++++++
T Consensus        71 ~~~F~~fY~~in~G~~~~~~~~~~i~~~~------~~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   71 DSFFNWFYWGINIGSLFSPTLVPYIQQNY------GW----------FLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHCS-------H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhHHHHHHHHhhhhHhhcccchhhcccc------ch----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            55556677888899999888888876432      33          4567777777777777666655555554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.81  E-value=0.062  Score=59.33  Aligned_cols=171  Identities=12%  Similarity=0.089  Sum_probs=112.0

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHH-HHHhhhhhHHHHhhhc-cCchHHHHHHHHHH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSG-TCYITPLIGAFLADSY-MGRFWTIASFSIIY  106 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~-~~~i~~~~~G~laDr~-~Grk~~~~~~~~~~  106 (568)
                      +.....++...++...+-++.+++|-|+.+++|.+.+.+..+.+...+ +..++..++|++.-|+ ++.|.+.....+..
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            456677788999999999999999999999999999999999876644 5558899999999988 23344444333332


Q ss_pred             HHHHHH---HHHh--h------------hccCCCC------------CCCC-----------------------------
Q 008355          107 CLGMTL---LTLT--A------------SVSGLKP------------SCDK-----------------------------  128 (568)
Q Consensus       107 ~i~~~~---~~~~--~------------~~~~~~~------------~~~~-----------------------------  128 (568)
                      .+..+.   ..+.  .            ..|....            +||.                             
T Consensus       472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~  551 (735)
T KOG3626|consen  472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS  551 (735)
T ss_pred             HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence            222222   1110  0            0011111            1221                             


Q ss_pred             ------------C------------CCCCC-CchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          129 ------------D------------ACHPT-GAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       129 ------------~------------~~~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                                  +            -|+.+ ...+..+++..++..+-.+...+....++-+.+++++      |..++|
T Consensus       552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG  625 (735)
T KOG3626|consen  552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG  625 (735)
T ss_pred             CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence                        0            02221 2233444444444555555666677778889999998      999999


Q ss_pred             hHHH-HHHHhHHHhhhhhhheec
Q 008355          184 WFYL-SINIGALVASSVLVWIQM  205 (568)
Q Consensus       184 ~~~~-~~~ig~~~~p~~~~~i~~  205 (568)
                      +..+ ..-+|.+-+|++.|++.|
T Consensus       626 ~~~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  626 FQWMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             HHHHHHHHHhcCCchHhhhhhHh
Confidence            9555 457788889999999976

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.43  E-value=3.2  Score=43.99  Aligned_cols=61  Identities=13%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008355          454 WQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKV  514 (568)
Q Consensus       454 ~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~  514 (568)
                      .++...++..+.....+.+..++-++++.+..-|++|-+.|+..++|+---..++-.+.|.
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            4555677788888888999999999999999999999999999999887766666555544

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.40  E-value=0.15  Score=49.32  Aligned_cols=92  Identities=11%  Similarity=0.080  Sum_probs=64.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhh
Q 008355          406 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM  485 (568)
Q Consensus       406 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~  485 (568)
                      .+++..+.+|.+...+++.........+             ....+.|.+....++.+.+....+.+......+-+|+ .
T Consensus        63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~~-------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~  128 (250)
T PF06813_consen   63 FGPWVVLLIGAVLGFVGYGLLWLAVSGR-------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S  128 (250)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCc-------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence            5666778899999999988776654220             1113455555555566667666667777777788985 6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008355          486 RSLCSALSLTTVAVGNYLSTLLVTIV  511 (568)
Q Consensus       486 rg~~~g~~~~~~~lg~~lg~~l~~~i  511 (568)
                      ||++.|+.....++++.+-+.+...+
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHH
Confidence            99999999999898886665554433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.24  E-value=0.28  Score=51.54  Aligned_cols=154  Identities=8%  Similarity=-0.012  Sum_probs=110.7

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT  111 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~  111 (568)
                      +...+.-.+-+++.-+.-..+..|+..+ |++...+|..=+...+....+.....++.+|+ |..|.=..+.....+...
T Consensus       261 flas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~  338 (432)
T PF06963_consen  261 FLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHH
Confidence            3333333333333333444567888865 99999999999999999999999999999999 998888888776555554


Q ss_pred             HHHHhhhccCCCCCCCCCCCCC-CCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN  190 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (568)
                      ++..+-..|.-          + ...+...++.+.++.-+|-=++--+..-++-|..|+++      |+...|..+...+
T Consensus       339 ~~v~~~~~~~~----------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~  402 (432)
T PF06963_consen  339 LCVVSFWAPGS----------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQS  402 (432)
T ss_pred             HHHHHHhcCCC----------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHH
Confidence            44433222220          0 12345667777777777777777788888999999888      9999999988889


Q ss_pred             HhHHHhhhhhhhe
Q 008355          191 IGALVASSVLVWI  203 (568)
Q Consensus       191 ig~~~~p~~~~~i  203 (568)
                      +.-++-..++-.+
T Consensus       403 lf~ll~~~~~ii~  415 (432)
T PF06963_consen  403 LFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHHHHhcc
Confidence            8888876655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.21  E-value=0.17  Score=53.71  Aligned_cols=115  Identities=17%  Similarity=0.222  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccC---ChhhH
Q 008355          410 QRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQA---PDAMR  486 (568)
Q Consensus       410 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~---P~~~r  486 (568)
                      .-+.++.++.+++.+.++.....                ..+.......+++..+|..+.....-+.+.|..   |.+ |
T Consensus        60 ~Y~~i~~~~~~~~~~~~~~~~~~----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~  122 (433)
T PF03092_consen   60 PYMIIGWLLGAVSALVLALLPAS----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-R  122 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-h
Confidence            45677777776666655544311                123334455566677888888877777777766   344 7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008355          487 SLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW  557 (568)
Q Consensus       487 g~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  557 (568)
                      |..++.......+|+.++..+.|.+.+...                .+..|.+.+.+.++..+..+++.+|
T Consensus       123 g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~----------------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  123 GDLQSFVWGVRSVGSLVGSLLSGPLLDSFG----------------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcCC----------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence            888999999999999999999987755321                1234667677777776666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.20  E-value=5.1  Score=42.37  Aligned_cols=161  Identities=14%  Similarity=0.017  Sum_probs=98.2

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC---hhhhhhhHHHHHH-HHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQG---NVTASNNVTNWSG-TCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~g~~~~~~~~-~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      ++.++.+.+..++..+.++.+..     +++.+.++   +..+.++-...-. ++.+..++-+++.+++ .|.+++.+..
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~   99 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIIL   99 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHH
Confidence            44556666666666666544332     34444333   4445555555555 6678888899999999 9999999888


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCC--------CCCc-h---------hHHHHHHHHHHH-hhcccCccccccccc
Q 008355          104 IIYCLGMTLLTLTASVSGLKPSCDKDACH--------PTGA-Q---------TAVTFVALYLIA-LGTGGIKPCVSSFGA  164 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~---------~~~~~~~~~l~g-~g~g~~~~~~~~~~~  164 (568)
                      ..+....+++++.- .|.    +|.-|.+        ...+ +         -|..-+.-++.- .|.=...-.-..+..
T Consensus       100 ~~F~~fF~LFa~Vi-~P~----~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faN  174 (509)
T COG3202         100 GFFLGFFALFAFVI-YPY----KDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFAN  174 (509)
T ss_pred             HHHHHHHHHHHHHH-hcc----ccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888761 232    2222211        0011 1         011111111111 111111113457778


Q ss_pred             ccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheec
Q 008355          165 DQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM  205 (568)
Q Consensus       165 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~  205 (568)
                      |.+..+|      -.|.+++++.+.|++..++..+..++.+
T Consensus       175 eitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         175 EITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888887      8899999999999999999988888765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.19  E-value=0.14  Score=53.76  Aligned_cols=180  Identities=18%  Similarity=0.067  Sum_probs=113.5

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC----hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCch-------HHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQG----NVTASNNVTNWSGTCYITPLIGAFLADSYMGRF-------WTI   99 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s----~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk-------~~~   99 (568)
                      ...+++...+....+--..+.+..|.++..+-+    ....++..+.-.+.-.+..|+..++--|. +++       .=+
T Consensus       286 ~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KF  364 (498)
T COG3104         286 AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKF  364 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHH
Confidence            344444444444444445556677766543222    12345666666777777788887887775 443       123


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhh
Q 008355          100 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS  179 (568)
Q Consensus       100 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (568)
                      -+|+.++..+.+++........         ......+.+.++...+++++|.=.+.|+..++++...|+.-      .+
T Consensus       365 alGl~l~g~~fl~l~~~~~~~~---------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s  429 (498)
T COG3104         365 ALGLILAGLGFLILLLAGIWFG---------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KS  429 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc---------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HH
Confidence            4555666666665554411000         00122567889999999999999999999999999999987      89


Q ss_pred             hhhhhHHHHHHHhHHHhhhhhhh------eeccccchhhhhHHHHHHHHHHHH
Q 008355          180 SFFNWFYLSINIGALVASSVLVW------IQMNVGWGWGFGIPAVAMAIAVVF  226 (568)
Q Consensus       180 ~~~~~~~~~~~ig~~~~p~~~~~------i~~~~g~~~~f~~~~~~~~~~~~~  226 (568)
                      ..++.+-+....|..++..+.+.      ..+.......|+..++..++....
T Consensus       430 ~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         430 FIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             HHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            99999999998888888776663      222334555566555444433333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.73  E-value=1.9  Score=48.04  Aligned_cols=313  Identities=11%  Similarity=0.004  Sum_probs=174.2

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHH
Q 008355           64 NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFV  143 (568)
Q Consensus        64 ~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (568)
                      .........++.....+..+.....+|-.-|+-..+..-.+...+..+...+. +++.          .+.........+
T Consensus        19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~ll-ai~a----------~~~~~~~~~~~~   87 (654)
T TIGR00926        19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALL-SFGA----------IPSSGHPLHDLL   87 (654)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hhcc----------CcccccchHHHH
Confidence            33445566777788888888888889988445555555555555555555544 1121          001111234456


Q ss_pred             HHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecccc-chh------hhh-H
Q 008355          144 ALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG-WGW------GFG-I  215 (568)
Q Consensus       144 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g-~~~------~f~-~  215 (568)
                      ..+.+.++.++..+..+++.++..+..++   ..+.+..+.+++..+.+.+. ..++..+..... +..      .|. .
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~~~~~~a  163 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQDCYPLA  163 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccCcchHHH
Confidence            76778899999999999999999887652   33446788899998877775 565666655443 321      232 2


Q ss_pred             HHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhh
Q 008355          216 PAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFD  295 (568)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (568)
                      .++..++.++.+.......+..++.+.......++........+                       .+        +  
T Consensus       164 F~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~-----------------------~~--------~--  210 (654)
T TIGR00926       164 FGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR-----------------------KR--------F--  210 (654)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH-----------------------Hh--------h--
Confidence            33334444444444444333333332222222222111111000                       00        0  


Q ss_pred             hhhhhccccccCCCCCCCcccc--hhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCchhh
Q 008355          296 KAAVETQTDRVKGSADPWRLCT--VTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASL  373 (568)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (568)
                             ..........|.+..  +...++.+...+.+.++.....+++.+.++......+..+.....+ .....+...
T Consensus       211 -------~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~~ip~  282 (654)
T TIGR00926       211 -------STRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGFEIQP  282 (654)
T ss_pred             -------ccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCEecCH
Confidence                   000000001121111  1112335566677777777777777777755545444444444322 222223334


Q ss_pred             ccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008355          374 SLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLN  435 (568)
Q Consensus       374 ~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  435 (568)
                      ..++.+-.++..++...+..++.+++.++   ..+...+.-+.+.+.++.+.+..+......
T Consensus       283 ~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~  341 (654)
T TIGR00926       283 DQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLK  341 (654)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666677777777777666778877554   556778889999999999888888866666

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.31  E-value=0.66  Score=41.42  Aligned_cols=61  Identities=7%  Similarity=0.139  Sum_probs=53.5

Q ss_pred             ehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008355          451 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV  511 (568)
Q Consensus       451 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i  511 (568)
                      +.+.+++.-++.|++.+...++.-.++.+...++.+++-.+++....+.+.++|.++.-.+
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788889999999999999999999999999999999999999999988887776544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=93.13  E-value=1.6  Score=43.16  Aligned_cols=59  Identities=12%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             ehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008355          451 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVT  509 (568)
Q Consensus       451 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  509 (568)
                      +++.+...+++-|+-.+..+...+--+.+..+++.|-.+++...+.-.+|..+++.+.-
T Consensus       341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            55555555666677667677666777888888999999999998888888877766654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.69  E-value=0.19  Score=52.12  Aligned_cols=180  Identities=10%  Similarity=-0.034  Sum_probs=100.1

Q ss_pred             cCCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHH-hCCCh----------------hhhhhhHHHHHHHHHhhhhhHH
Q 008355           24 KTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQ-LNQGN----------------VTASNNVTNWSGTCYITPLIGA   86 (568)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~----------------~~~g~~~~~~~~~~~i~~~~~G   86 (568)
                      .+.++|.++.++...++...+.....-+-+.++-++ ++-++                ..-.|-+...++...+.+...-
T Consensus       274 ~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~  353 (498)
T KOG0637|consen  274 LKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVE  353 (498)
T ss_pred             HhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999887777777777443 22221                1123445667888889999999


Q ss_pred             HHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCCCCCCCCCchhHHHHHHHHHHHhhcccCccccccccc
Q 008355           87 FLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP--SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGA  164 (568)
Q Consensus        87 ~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  164 (568)
                      ++.||+ |-|+.++.+...+.++..+.++...+.....  +..+........-.......-...++-.+....+..+..+
T Consensus       354 ~l~~~~-g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s  432 (498)
T KOG0637|consen  354 KLSRKF-GTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALAS  432 (498)
T ss_pred             HHHHhc-CcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccccccccccccc
Confidence            999999 8666666666656666665554311000000  0000000000111111112122223333333222223222


Q ss_pred             ccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecccc
Q 008355          165 DQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG  208 (568)
Q Consensus       165 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g  208 (568)
                      ........    .+|...|+.+..+.+-.++.....|.+.+.+|
T Consensus       433 ~~~~~sg~----g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G  472 (498)
T KOG0637|consen  433 IEIGNSGL----GQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG  472 (498)
T ss_pred             ccccCccC----CCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence            22222221    15666677888999999888887787777665

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=92.43  E-value=1.5  Score=43.68  Aligned_cols=119  Identities=16%  Similarity=0.075  Sum_probs=69.4

Q ss_pred             CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHH
Q 008355           25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI  104 (568)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~  104 (568)
                      +..-|+++.+-..-++...+|-+ ..++....    +.+..+..  .+.....-...+++.+.+..++ |-|.++.++..
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~v----n~~lg~~s--l~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLG-LQNLQTSV----NYDLGTVS--LGALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHH-HHHHHHHH----hcCcccch--hhhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence            34456666665554544444433 33344333    33322222  1223334444555555677776 99999988766


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCC
Q 008355          105 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETD  171 (568)
Q Consensus       105 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  171 (568)
                      .+.......-.                    ..+..++..-...|+|.+.++.+-.++++++-+.+.
T Consensus        97 ~Y~lyiA~Nl~--------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya  143 (390)
T KOG3097|consen   97 PYALYIAANLE--------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA  143 (390)
T ss_pred             HHHHHHHhhcc--------------------hhHHhhccHHHhhccccccccccCcceecHHHHHHH
Confidence            55543322211                    235556777788899999999999999888765543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=92.24  E-value=0.32  Score=50.38  Aligned_cols=61  Identities=15%  Similarity=0.091  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhhe
Q 008355          137 QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI  203 (568)
Q Consensus       137 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i  203 (568)
                      +.+.+++..+..|+..|.........+.|..|+++      |..+++...++-++|-.++..++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46777777788899999999999888999888877      99999999999999999988876554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=91.56  E-value=0.99  Score=45.34  Aligned_cols=153  Identities=14%  Similarity=0.054  Sum_probs=82.5

Q ss_pred             HHHHHHHH-HHhCCChhhhh-hhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 008355           50 TNLVNYLQ-KQLNQGNVTAS-NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCD  127 (568)
Q Consensus        50 ~~l~~yl~-~~lg~s~~~~g-~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  127 (568)
                      +++.+|+. .+.+++..+.. -+.-...-...+.-++.=.+.|-. ..|++++.-.+...+.-.++-+..++..      
T Consensus        25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g~sV~~------   97 (433)
T KOG3810|consen   25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFGPSVKA------   97 (433)
T ss_pred             CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhcCCchh------
Confidence            35566665 44566655433 222222333344444445689988 7777777655544454555555533322      


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccc
Q 008355          128 KDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV  207 (568)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~  207 (568)
                                   +-+.-+..|...+.. .+.++++-...++++      +.++.+....+.-.|-..|..++-.+....
T Consensus        98 -------------mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~------Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~  157 (433)
T KOG3810|consen   98 -------------MQVLEFFYGPATAAE-IAYYSYIYSKVDPEM------YKRVTGYCRAAFLVGKFVGSVLAQLLVSLE  157 (433)
T ss_pred             -------------eeeehhhcChHHHHH-HhhhheeeeecCHHH------HHHHHHHhHHHHHHHhHHHhHHHHHHhhhc
Confidence                         333333333333322 234555555566666      888888888888888888877766555432


Q ss_pred             --cchhhhhHHHHHHHHHHHHHHh
Q 008355          208 --GWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       208 --g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                        ++...=.++.....++.++..+
T Consensus       158 ~~sy~~LN~ISL~~~~ia~~~A~f  181 (433)
T KOG3810|consen  158 TLSYTTLNYISLAEVTIAVLLALF  181 (433)
T ss_pred             ccchhhhchhhHHHHHHHHHHHhh
Confidence              3333334444444455544443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.37  E-value=7.5  Score=41.75  Aligned_cols=164  Identities=12%  Similarity=0.015  Sum_probs=89.4

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHh---CCChhhhhhhHHHH-HHHHHhhhhhHHHHhhhccCchHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQL---NQGNVTASNNVTNW-SGTCYITPLIGAFLADSYMGRFWTIASFS  103 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~g~~~~~~-~~~~~i~~~~~G~laDr~~Grk~~~~~~~  103 (568)
                      ++.++.+.+.-++..+.|..+.     -+++.+   ..++..+..+=... .-+..+...+-.+++|++ +|.+++.+..
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~   96 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII   96 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence            4445666666666555543222     122221   11223333332222 224456677789999999 9999998887


Q ss_pred             HHHHHHHHHHHHhhhccCCCC-----CCCCCCCCCCCchh---------HHHHHHHHHHH-hhcccCcccccccccccCC
Q 008355          104 IIYCLGMTLLTLTASVSGLKP-----SCDKDACHPTGAQT---------AVTFVALYLIA-LGTGGIKPCVSSFGADQFD  168 (568)
Q Consensus       104 ~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------~~~~~~~~l~g-~g~g~~~~~~~~~~~~~~~  168 (568)
                      ..+....+++++.- .|.-..     .+|++... ...+.         |...+.-+..- .|.-...-.-+.+..|.++
T Consensus        97 ~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~-~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt  174 (491)
T PF03219_consen   97 IPFLGFFALFAFVL-YPNRDILHPDAFADKLLAI-LPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            77777777666541 232000     00110000 00111         11111111111 1111111234788899999


Q ss_pred             CCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheec
Q 008355          169 ETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM  205 (568)
Q Consensus       169 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~  205 (568)
                      .+|      -.|.++++..+.|+|.+++..+..++.+
T Consensus       175 ~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  175 VEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888      8899999999999999999988877766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.16  E-value=2.2  Score=41.31  Aligned_cols=140  Identities=14%  Similarity=0.135  Sum_probs=87.0

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHhhhccCch--HHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCCCCCCCCCchhHHHHH
Q 008355           67 ASNNVTNWSGTCYITPLIGAFLADSYMGRF--WTIASFSIIYCLGMTLLTLTASV-SGLKPSCDKDACHPTGAQTAVTFV  143 (568)
Q Consensus        67 ~g~~~~~~~~~~~i~~~~~G~laDr~~Grk--~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  143 (568)
                      -|++.+.+..+.++++-+..++..|- ..|  ..+.+..++......+..++.++ |+             -.++..-++
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~-------------kes~~~s~i  349 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPS-------------KESPSESLI  349 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCC-------------cCCchHHHH
Confidence            47777888888777777666666554 322  23334343333333332222211 21             123344466


Q ss_pred             HHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHH
Q 008355          144 ALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIA  223 (568)
Q Consensus       144 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~  223 (568)
                      +..+.-.+.|.++|...-+=.+..|+++      |.+.++++..-.|+-..++-...-.=....+-|-.|-++.+...++
T Consensus       350 ~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a  423 (454)
T KOG4332|consen  350 GFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA  423 (454)
T ss_pred             HHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence            6677788899999999999999999988      9999999999988877765332111111245667787777666655


Q ss_pred             HHH
Q 008355          224 VVF  226 (568)
Q Consensus       224 ~~~  226 (568)
                      .++
T Consensus       424 ~i~  426 (454)
T KOG4332|consen  424 SIL  426 (454)
T ss_pred             HHH
Confidence            443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.25  E-value=3.8  Score=43.36  Aligned_cols=109  Identities=19%  Similarity=0.190  Sum_probs=72.4

Q ss_pred             HHHHHHhhhhhHHHHhhhc--cCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC---CCCC---CCchhHHHHHHH
Q 008355           74 WSGTCYITPLIGAFLADSY--MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKD---ACHP---TGAQTAVTFVAL  145 (568)
Q Consensus        74 ~~~~~~i~~~~~G~laDr~--~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~  145 (568)
                      ...+..++..+.+.+++|.  +||++.+.++..+..++.++.-+.  .|.     |+|   +...   ..++.....+.-
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~--~p~-----dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLS--FPN-----DAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcc--ccc-----cCCCCCCcccccccccchhHHHHHH
Confidence            4444555556666666544  388999998888877777766554  343     332   1111   223444455556


Q ss_pred             HHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHh
Q 008355          146 YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVA  196 (568)
Q Consensus       146 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  196 (568)
                      ++.|++-+......+.++++.+ +++      |..+++++..--.++..++
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~------~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDD------RAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCc------hHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999 445      7888888777766666654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=87.63  E-value=42  Score=35.62  Aligned_cols=59  Identities=15%  Similarity=0.083  Sum_probs=49.4

Q ss_pred             ehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008355          451 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVT  509 (568)
Q Consensus       451 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  509 (568)
                      +-++.++..++.|+..+......+.+..+..+++.|..+..+..+...+|-.+|+.+.-
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666888999999999889999999999999999999999888888888877643

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.45  E-value=1.2  Score=47.08  Aligned_cols=58  Identities=10%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhh
Q 008355          137 QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVL  200 (568)
Q Consensus       137 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~  200 (568)
                      +-+..++..++.|+..|...+....+..+..++++      |..+-.+...+.++|-.+|..++
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677889999999999999998888888766      88888888888888888776643

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=86.17  E-value=52  Score=35.24  Aligned_cols=55  Identities=13%  Similarity=-0.059  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhh-hhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008355          459 YFIVGCAEVFTFI-GQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTK  513 (568)
Q Consensus       459 ~~l~g~~~~~~~~-~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~  513 (568)
                      ++...+-...+.. .-|.++.|....++-.+-.++.....++|..+++.+...+.+
T Consensus       135 Yv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       135 YVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333 789999999999999999999999999999999988887764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=84.48  E-value=41  Score=34.29  Aligned_cols=63  Identities=13%  Similarity=-0.010  Sum_probs=36.6

Q ss_pred             ehhhHHHHHHHHHHHHHHHhhh-----hHHhhhccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 008355          451 TIFWQVPQYFIVGCAEVFTFIG-----QLEFFYDQAPDAMRSLCSALSL-TTVAVGNYLSTLLVTIVTK  513 (568)
Q Consensus       451 ~~~~~i~~~~l~g~~~~~~~~~-----~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~l~~~i~~  513 (568)
                      +...++..=++.|++-.+.+.+     ..+...+..|++..+...+... ..+.+-.++++.+.-.+.+
T Consensus       120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~  188 (354)
T PF05631_consen  120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD  188 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence            5667777777778777776654     2334456677776666655544 3344444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	568
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		4e-32
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		3e-09

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 210/503 (41%), Gaps = 90/503 (17%)
Query: 29  KACRFILGNECCERLAYYGMSTNLVNYLQKQL------NQGNVTASNNVTNWSGTCYITP 82
           +   +I+ +E CER ++YGM   L  +L   L            A +   ++    Y  P
Sbjct: 12  RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71
Query: 83  LIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL-TASVSGLKPSCDKDACHPTGAQTAVT 141
           L+G ++AD + G++ TI   S+IYC+G   L +   SV G                    
Sbjct: 72  LLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGF------------------- 112
Query: 142 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV 201
           +  L+LIALG+GGIKP VSSF  DQFD+++    +K    F+ FY +IN G+  AS  + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSMP 169
Query: 202 WIQMNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVV 261
            +  N G    FGIP             G + Y    P   P            +  +  
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP--EP------------KDPHGF 215
Query: 262 VPADKSLLYETADEECNIQGSRKLESTSKFKF-----------------------FDKAA 298
           +P  +S L    + + NI     L       +                       F  A 
Sbjct: 216 LPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAG 275
Query: 299 VETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTM 358
              Q +R + S           V+ +++++R+L ++A    F +++ Q ++ ++LQ N M
Sbjct: 276 ASLQLERARKSHPD------AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM 329
Query: 359 DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI 418
            +   P +  P A +   + L V+   P  + V+ P   ++       T L++MG G+ I
Sbjct: 330 VK---PQWFEP-AMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAI 382
Query: 419 SIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFY 478
           +  S +  G ++++           D  +  ++IFWQ+  Y ++   EV      LEF Y
Sbjct: 383 TGLSWIVVGTIQLMM----------DGGS-ALSIFWQILPYALLTFGEVLVSATGLEFAY 431
Query: 479 DQAPDAMRSLCSALSLTTVAVGN 501
            QAP AM+    +    +V VGN
Sbjct: 432 SQAPKAMKGTIMSFWTLSVTVGN 454

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 36/169 (21%)
Query: 37  NECCERLAYYGMSTNLVNYLQKQLNQGNV-----TASNNVTNWSGTCYITPLIGAFLADS 91
            E  ER +YYGM   L+ Y+   ++ G++     TA++ +  ++   Y++  IG F+AD 
Sbjct: 21  TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR 80
Query: 92  YMGR----FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYL 147
            +G     FW      ++  LG  +L L                 P GA     F ++ L
Sbjct: 81  IIGARPAVFWG----GVLIMLGHIVLAL-----------------PFGASA--LFGSIIL 117
Query: 148 IALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVA 196
           I +GTG +KP VS+     +DE D     ++ + F+ F   IN+GA +A
Sbjct: 118 IIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIA 162
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	568
2xut_A	524	Proton/peptide symporter family protein; transport	0.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	5e-30
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	5e-05

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  561 bits (1449), Expect = 0.0
 Identities = 127/552 (23%), Positives = 220/552 (39%), Gaps = 56/552 (10%)

Query: 21  NKKKTGNW-KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQG------NVTASNNVTN 73
           +      W +   +I+ +E CER ++YGM   L  +L   L            A +   +
Sbjct: 3   SPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHS 62

Query: 74  WSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHP 133
           +    Y  PL+G ++AD + G++ TI   S+IYC+G   L +                  
Sbjct: 63  FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH--------------- 107

Query: 134 TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 193
                   +  L+LIALG+GGIKP VSSF  DQFD+++          F+ FY +IN G+
Sbjct: 108 ---SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGS 161

Query: 194 LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVA 253
             AS  +  +  N G    FGIP V M +A VFF+ G + Y    P        + VI +
Sbjct: 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221

Query: 254 SFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVET----QTDRVKGS 309
           +     V    +  L+               + +         A V              
Sbjct: 222 ALLTK-VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280

Query: 310 ADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIP 369
               +      V+ +++++R+L ++A    F +++ Q ++ ++LQ N M +         
Sbjct: 281 ERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFE 336

Query: 370 SASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGIL 429
            A +   + L V+   P  + V+ P   ++       T L++MG G+ I+  S +  G +
Sbjct: 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGLSWIVVGTI 393

Query: 430 EVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLC 489
           +                   ++IFWQ+  Y ++   EV      LEF Y QAP AM+   
Sbjct: 394 Q-----------LMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442

Query: 490 SALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFL 549
            +    +V VGN    L    V   T        +   ++      F++     ++L  +
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSVKSPTVTE---QIVQTGMSVTAFQMFFF--AGFAILAAI 497

Query: 550 VYLWIAKWFTYK 561
           V+   A+ +  +
Sbjct: 498 VFALYARSYQMQ 509

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score =  122 bits (308), Expect = 5e-30
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 28/211 (13%)

Query: 29  KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQG-----NVTASNNVTNWSGTCYITPL 83
                +   E  ER +YYGM   L+ Y+   ++ G       TA++ +  ++   Y++  
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 84  IGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFV 143
           IG F+AD  +G    +    ++  LG  +L L    S L                   F 
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL-------------------FG 113

Query: 144 ALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI 203
           ++ LI +GTG +KP VS+     +DE D     ++ + F+ F   IN+GA +A  ++   
Sbjct: 114 SIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAA 169

Query: 204 QMNVGWGWGFGIPAVAMAIAVVFFFSGSRLY 234
           Q   G+   F + A+ M I ++ ++ G +  
Sbjct: 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 50/242 (20%)

Query: 322 EELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSV 381
            E   ++  +P++ + ++F  +  Q S +                  P +     + L +
Sbjct: 277 TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDS----SWFPVSWFQSLNPLFI 332

Query: 382 IFWAPIYDIVIVPFA---RKLTGHERGFTQLQRMGIGLLI---SIFSMVAAGILEVVRLN 435
           + + P        FA        ++   +   +  +GL+    S   M   G L      
Sbjct: 333 MLYTPF-------FAWLWTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALYG---- 379

Query: 436 IVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT 495
                      +  ++  W V  + +V   E+      L      AP A  S   ++   
Sbjct: 380 ----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFL 429

Query: 496 TVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIA 555
           + +VG+ L+  LVT+    +                    ++    + SV+  +V ++++
Sbjct: 430 SSSVGSALNAQLVTLYNAKSEVA-----------------YFSYFGLGSVVLGIVLVFLS 472

Query: 556 KW 557
           K 
Sbjct: 473 KR 474

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	568
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.98
2xut_A	524	Proton/peptide symporter family protein; transport	99.98
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.43
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.41
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.34
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.19
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.05
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.92
2xut_A	524	Proton/peptide symporter family protein; transport	98.14

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.98  E-value=3.8e-31  Score=283.23  Aligned_cols=445  Identities=20%  Similarity=0.284  Sum_probs=290.4

Q ss_pred             CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhhhhhHHHHHHHHHhhhhhHHHHhhh-ccCchHH
Q 008355           25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQ-----LNQGNVTASNNVTNWSGTCYITPLIGAFLADS-YMGRFWT   98 (568)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr-~~Grk~~   98 (568)
                      ++++|.++.+++..++.++.+|++..+++.|++++     +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            34567788999999999999999999999999998     99999999999999999999999999999999 8 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhh
Q 008355           99 IASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK  178 (568)
Q Consensus        99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  178 (568)
                      +..+.++.+++.++++++                   ++.+.++++|+++|++.|...++..++++|++|+++++    |
T Consensus        88 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r  144 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALP-------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----R  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSC-------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----H
T ss_pred             HHHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----c
Confidence            999999999999988876                   45778999999999999999999999999999987733    7


Q ss_pred             hhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeec---CCCC-ChhHHHHHHHHH-
Q 008355          179 SSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ---KPGG-SPLTRIMQVIVA-  253 (568)
Q Consensus       179 ~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~-  253 (568)
                      ++++++++.+.++|..++|.+++++.+..||++.|++.++..++++++.....++..++   +++. .+.++..+.... 
T Consensus       145 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (491)
T 4aps_A          145 DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKV  224 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHC
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHH
Confidence            77888899999999999999999999999999999998776666655544332222111   1111 111111110000 


Q ss_pred             -------------HHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhh
Q 008355          254 -------------SFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQ  320 (568)
Q Consensus       254 -------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (568)
                                   .......... ++......  .. ...         .......               .+++.. ..
T Consensus       225 g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-~~~---------~~~~~~~---------------~~~~~~-~~  275 (491)
T 4aps_A          225 SLAVAGFIAIIVVMNLVGWNSLP-AYINLLTI--VA-IAI---------PVFYFAW---------------MISSVK-VT  275 (491)
T ss_dssp             CCCCHHHHHHHHHHHHHSSCCTT-HHHHHHHH--HH-HHH---------HHHHHHH---------------HC-------
T ss_pred             HHHHHHHHHHHHHHHhccCcccc-cchhhhhH--HH-HHH---------HHHHHHH---------------Hhhccc-cc
Confidence                         0000000000 00000000  00 000         0000000               000000 00


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHhhhccccceeEeeccc-ccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhh
Q 008355          321 VEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNT-MDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKL  399 (568)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~  399 (568)
                      ..++++......++.....++..+.+....+..+... ....     ....+.+.....+..++..++.+++    .+|.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~  346 (491)
T 4aps_A          276 STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWL----WTAW  346 (491)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHH----HHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHH----HHHH
Confidence            0122222233334444445555555544432221110 1111     0234455666667777777777664    4454


Q ss_pred             hCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhc
Q 008355          400 TGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYD  479 (568)
Q Consensus       400 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~  479 (568)
                      ++|+  ....+.+..+.++++++++.+.......           ......+.++.++..++.+++.+...|..++++.|
T Consensus       347 ~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  413 (491)
T 4aps_A          347 KKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-----------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTK  413 (491)
T ss_dssp             TTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-----------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             hccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4432  4455677788888888877766544210           00112356677778889999999999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhce
Q 008355          480 QAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT  559 (568)
Q Consensus       480 ~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~  559 (568)
                      ..|++.||+++|+.++...+|+.+++.+.+.+.+.                 ++...|+..+++++++.++.++..++.+
T Consensus       414 ~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          414 LAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             HTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876432                 1234677888888888877777776655


Q ss_pred             ec
Q 008355          560 YK  561 (568)
Q Consensus       560 ~~  561 (568)
                      ++
T Consensus       477 ~~  478 (491)
T 4aps_A          477 GL  478 (491)
T ss_dssp             --
T ss_pred             HH
Confidence            44

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.98  E-value=3.4e-31  Score=286.09  Aligned_cols=472  Identities=27%  Similarity=0.465  Sum_probs=290.5

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhC------CChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLN------QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTI   99 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~   99 (568)
                      +++|.++.+++..++.++++|++.++++.|+++++|      ++..+.+++.+++.++..++.+++|+++||++|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            345678889999999999999999999999999999      99999999999999999999999999999976999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhh
Q 008355          100 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK  178 (568)
Q Consensus       100 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  178 (568)
                      .++.++.+++.++++++                   . +.+.+++.|++.|++.+...++..++++|++|+++      |
T Consensus        89 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r  143 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIF-------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------K  143 (524)
T ss_dssp             HHHHHHHHHHHHHHHHT-------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------T
T ss_pred             HHHHHHHHHHHHHHHHh-------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------h
Confidence            99999999999888877                   3 57889999999999999999999999999999988      7


Q ss_pred             hhh---hhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHH
Q 008355          179 SSF---FNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASF  255 (568)
Q Consensus       179 ~~~---~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (568)
                      +++   +++++...++|..++|.+++++.+..||++.|++.++..+++.+..+..+++.+++++++++..+..+.+....
T Consensus       144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (524)
T 2xut_A          144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSAL  223 (524)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHH
Confidence            654   45599999999999999999999889999999988877666665555444433322232222222212211222


Q ss_pred             hhcccccCCcchhhhhhhhhhhhhccCccccC-----------------Cccchh--hhhhhhhccccccCCCCCCCccc
Q 008355          256 RKSNVVVPADKSLLYETADEECNIQGSRKLES-----------------TSKFKF--FDKAAVETQTDRVKGSADPWRLC  316 (568)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  316 (568)
                      +++.... +......+................                 ..+.+|  .+..+            ..   .
T Consensus       224 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~  287 (524)
T 2xut_A          224 LTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERAR------------KS---H  287 (524)
T ss_dssp             ---CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSC------------CS---C
T ss_pred             hhhhccc-CccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhh------------cc---c
Confidence            2111000 000000000000000000000000                 000001  00000            00   0


Q ss_pred             chhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhh
Q 008355          317 TVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFA  396 (568)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~  396 (568)
                      .....++.++......++.....++..+.+..+.+..+....+..   .+ .+.+.+...+.+..++..++.+++..+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (524)
T 2xut_A          288 PDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAI  363 (524)
T ss_dssp             CSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC-----
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHH
Confidence            000111223333334444444555555555555444332222111   11 24556667777788888888888765555


Q ss_pred             hhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHh
Q 008355          397 RKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEF  476 (568)
Q Consensus       397 ~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~  476 (568)
                      +|.+++   .++.+++.+|+++.+++++.+......           .+.....+.+++++.+++.+++++...+..+++
T Consensus       364 ~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  429 (524)
T 2xut_A          364 ERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM-----------MDGGSALSIFWQILPYALLTFGEVLVSATGLEF  429 (524)
T ss_dssp             ----------CCHHHHHTHHHHHHHHHHTTTTTTTT-----------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554433   455667778888888877765533210           000112356677778899999999999999999


Q ss_pred             hhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCC-CCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008355          477 FYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPD-NLNRGHLDYFYWLLTILSVLNFLVYLWIA  555 (568)
Q Consensus       477 ~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~a~~~~v~~v~~~~~~  555 (568)
                      +.|.+|++.||+++|++++..++|+.+|+.+.+.+.+...    .+|.++ ..+  .....|++.+++++++.++++++.
T Consensus       430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  503 (524)
T 2xut_A          430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYA  503 (524)
T ss_dssp             HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998764321    023110 001  112237788888888888777777


Q ss_pred             hhceecc
Q 008355          556 KWFTYKK  562 (568)
Q Consensus       556 ~~~~~~~  562 (568)
                      +++++++
T Consensus       504 ~~~~~~~  510 (524)
T 2xut_A          504 RSYQMQD  510 (524)
T ss_dssp             -------
T ss_pred             HHhccch
Confidence            7665443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=5.7e-28  Score=255.12  Aligned_cols=402  Identities=10%  Similarity=0.006  Sum_probs=254.7

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      ++.++.+++..++.....+...+.++.+. +++ .+..+.|++.+++.++..++.++.|+++||+ |||+++.++.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            45566667777777777666666666554 567 9999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHH----hhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008355          108 LGMTLLTL----TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN  183 (568)
Q Consensus       108 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (568)
                      ++.+++++    +                   .+.+.++++|+++|++.+...++..++++|++|+++      |+++++
T Consensus       104 ~~~~~~~~~~~~~-------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~  158 (451)
T 1pw4_A          104 AVMLFMGFVPWAT-------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS  158 (451)
T ss_dssp             HHHHHHHHCHHHH-------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred             HHHHHHHhhhhcc-------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence            99999988    6                   457789999999999999999999999999999888      999999


Q ss_pred             hHHHHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhccccc
Q 008355          184 WFYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVV  262 (568)
Q Consensus       184 ~~~~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (568)
                      +.+.+.++|..++|.+++++.+.+| ||+.|++.++..++..++.+...++.++.....+.                   
T Consensus       159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  219 (451)
T 1pw4_A          159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-------------------  219 (451)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-------------------
Confidence            9999999999999999999888888 99999998876665554444333322111100000                   


Q ss_pred             CCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHH-HHhhhHHH
Q 008355          263 PADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV-WASGIVFA  341 (568)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  341 (568)
                      .+.     +.+++++.+.   +  ..                    +..++++.........+.+...... ++....++
T Consensus       220 ~~~-----~~~~~~~~~~---~--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
T 1pw4_A          220 EEY-----KNDYPDDYNE---K--AE--------------------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY  269 (451)
T ss_dssp             TTT-----CCC--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhh-----cccccccchh---h--hh--------------------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            000     0000000000   0  00                    0000000000000001122111111 11111111


Q ss_pred             hhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHH-
Q 008355          342 TVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI-  420 (568)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~-  420 (568)
                      ...... +.+..      ...+ ......+.+.....+..++..++.++    +.+|..+     ++++.+.++.++.. 
T Consensus       270 ~~~~~~-~~~~~------~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~~~  332 (451)
T 1pw4_A          270 GILDWS-PTYLK------EVKH-FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTLVT  332 (451)
T ss_dssp             HHHHHH-HHHBT------TBSC-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHH------HhcC-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHHHH
Confidence            221111 11111      1111 00011122333333444444445444    4455300     22334555554444 


Q ss_pred             HHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHH-
Q 008355          421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAV-  499 (568)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-  499 (568)
                      ++++.+....                  ..+.+......++.+++.....+..+.++.|..|++.||++.|+.+....+ 
T Consensus       333 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  394 (451)
T 1pw4_A          333 IATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG  394 (451)
T ss_dssp             HHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Confidence            4444333111                  014455666677788888888888899999999999999999999999999 


Q ss_pred             HHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008355          500 GNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW  557 (568)
Q Consensus       500 g~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  557 (568)
                      |..+++.+.+.+.+..      +          +...|++.+++++++.+..++..++
T Consensus       395 g~~~~~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          395 GSVAASAIVGYTVDFF------G----------WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             HHHHHHHHHHHHHHSS------C----------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc------C----------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999887643      2          2456788888888887766665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=4.4e-28  Score=259.31  Aligned_cols=407  Identities=12%  Similarity=0.072  Sum_probs=234.8

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-CCC-CCCchhHHH
Q 008355           64 NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKD-ACH-PTGAQTAVT  141 (568)
Q Consensus        64 ~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~  141 (568)
                      ..+.|++.+++.++..++.+++|+++||+ |||+++.++.+++.++.++++++......   +... ... .-..+.+.+
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~---~~~~~~~~~~~a~~~~~l  129 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTS---INPDNTVPVYLAGYVPEF  129 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSC---SSSSSSCCGGGGGCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhh---hcchhHHHHHHhhhHHHH
Confidence            35578899999999999999999999999 99999999999999999998854110000   0000 000 012578899


Q ss_pred             HHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc--------ccchhhh
Q 008355          142 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN--------VGWGWGF  213 (568)
Q Consensus       142 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~--------~g~~~~f  213 (568)
                      +++|+++|+|.|+..+..+.+++|..|+++      |++..++.+.+..+|..+++.++..+...        .+|++.+
T Consensus       130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (491)
T 4gc0_A          130 VIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF  203 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh
Confidence            999999999999999999999999999998      99999999999999999998877655432        3466666


Q ss_pred             hHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchh
Q 008355          214 GIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKF  293 (568)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~  293 (568)
                      .+..+..++.++..+                                ..||+|+++..++++|+.++..++....+....
T Consensus       204 ~~~~~~~~~~~~~~~--------------------------------~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~  251 (491)
T 4gc0_A          204 ASECIPALLFLMLLY--------------------------------TVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ  251 (491)
T ss_dssp             HTTHHHHHHHHHHGG--------------------------------GSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhh--------------------------------cCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence            555544433333221                                246677777666666655544333211110000


Q ss_pred             --hhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHH-HhhhccccceeEeecccccCCCCCCcccCc
Q 008355          294 --FDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVF-ATVYSQMSTMFVLQGNTMDQHMGPNFKIPS  370 (568)
Q Consensus       294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (568)
                        .+.........    +....     ......++.........+.... ......+.+.+..       ..+ ......
T Consensus       252 ~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~  314 (491)
T 4gc0_A          252 AVQEIKHSLDHGR----KTGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-------TLG-ASTDIA  314 (491)
T ss_dssp             HHHHHHHHHHHHH----HHTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSS-CCHHHH
T ss_pred             HHHHHHHHHHhhh----hhhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-------hcC-CCccch
Confidence              00000000000    00000     0000001111111111111000 0000011111100       001 000011


Q ss_pred             hhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCcee
Q 008355          371 ASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM  450 (568)
Q Consensus       371 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (568)
                      ........+..++...+...    +.+|.++|       +.+..+...++++++.++.....               . .
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~----l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~---------------~-~  367 (491)
T 4gc0_A          315 LLQTIIVGVINLTFTVLAIM----TVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT---------------Q-A  367 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT---------------T-C
T ss_pred             hhHHHHHHHHHHHHHHHHHH----HHHhhcCc-------chhccchHHHHHHHHHHHHHHhc---------------c-c
Confidence            11122222333333333333    45554333       45667777777776665544321               0 1


Q ss_pred             ehhhHHHHHHHHH-HHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCc
Q 008355          451 TIFWQVPQYFIVG-CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLN  529 (568)
Q Consensus       451 ~~~~~i~~~~l~g-~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~  529 (568)
                      ..+..+...++.. .......|..+.+..|++|.+.|++++|+.+..+.+++.+++.+.+.+.+......          
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~----------  437 (491)
T 4gc0_A          368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA----------  437 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH----------
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            2222222222222 22333447788999999999999999999999999999999988887644221000          


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhceecccccC
Q 008355          530 RGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR  566 (568)
Q Consensus       530 ~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~~  566 (568)
                      ..+....|++++++++++.++.+++.||+|+|+.||.
T Consensus       438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei  474 (491)
T 4gc0_A          438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL  474 (491)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHH
Confidence            0011246788899999999999999999999987763

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=1.9e-25  Score=234.95  Aligned_cols=356  Identities=11%  Similarity=0.027  Sum_probs=231.9

Q ss_pred             CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008355           26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII  105 (568)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~  105 (568)
                      ++++.++.+.+..++..+......+.+| ++++++|.+..+.|++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence            3455566666666777776665555555 47788999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHH---HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhh
Q 008355          106 YCLGMTLL---TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF  182 (568)
Q Consensus       106 ~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (568)
                      .+++.+++   +.+                   .+.+.++++|++.|++.|...+...++++|++|+++      |++++
T Consensus       101 ~~~~~~~~~~~~~~-------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~  155 (438)
T 3o7q_A          101 YALGAALFWPAAEI-------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRL  155 (438)
T ss_dssp             HHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHH
T ss_pred             HHHHHHHHHhcccc-------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHH
Confidence            99999888   544                   468889999999999999999999999999999998      99999


Q ss_pred             hhHHHHHHHhHHHhhhhhhhee-cccc-------------------------chhhhhHHHHHHHHHHHHHHhcC-ceee
Q 008355          183 NWFYLSINIGALVASSVLVWIQ-MNVG-------------------------WGWGFGIPAVAMAIAVVFFFSGS-RLYR  235 (568)
Q Consensus       183 ~~~~~~~~ig~~~~p~~~~~i~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~~~  235 (568)
                      ++.+...++|..++|.+++.+. +..+                         |++.|++.++..++..+..+..+ ++.+
T Consensus       156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~  235 (438)
T 3o7q_A          156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ  235 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence            9999999999999999999887 5554                         89999876655554444433322 1110


Q ss_pred             ecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcc
Q 008355          236 IQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRL  315 (568)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (568)
                      ++++++++.                                          ......+.+                    
T Consensus       236 ~~~~~~~~~------------------------------------------~~~~~~~~~--------------------  253 (438)
T 3o7q_A          236 SDNHSDAKQ------------------------------------------GSFSASLSR--------------------  253 (438)
T ss_dssp             TTCCCCSST------------------------------------------TSHHHHHHH--------------------
T ss_pred             ccccccccc------------------------------------------cchhhhHHH--------------------
Confidence            000000000                                          000000000                    


Q ss_pred             cchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhh
Q 008355          316 CTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPF  395 (568)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~  395 (568)
                      ..    ++++.....+...+............+.++..+..+.+.       ...+.+.....+..++..++.++    +
T Consensus       254 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~----l  318 (438)
T 3o7q_A          254 LA----RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTW----L  318 (438)
T ss_dssp             HT----TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred             HH----hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            00    000111111111111111112222222220111101010       11122233333444444444444    4


Q ss_pred             hhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHH
Q 008355          396 ARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLE  475 (568)
Q Consensus       396 ~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~  475 (568)
                      .+|       .++++.+..+.++.+++++......                    +. +....+++.+++.+...|..+.
T Consensus       319 ~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~g~~~~~~~~~~~~  370 (438)
T 3o7q_A          319 ISR-------FAPHKVLAAYALIAMALCLISAFAG--------------------GH-VGLIALTLCSAFMSIQYPTIFS  370 (438)
T ss_dssp             HHH-------SCHHHHHHHHHHHHHHHHHHHHHCC--------------------HH-HHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHH-------hcchHHHHHHHHHHHHHHHHHHHcC--------------------Cc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            455       3444566777777766665554332                    22 2334457778888888999999


Q ss_pred             hhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008355          476 FFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVT  515 (568)
Q Consensus       476 ~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~  515 (568)
                      +..|..|++ ++.+.++.. .+.+|+.++|.+.+.+.+..
T Consensus       371 ~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          371 LGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999977 999999887 67799999999999988765

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=8.6e-24  Score=217.87  Aligned_cols=167  Identities=15%  Similarity=0.104  Sum_probs=148.3

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT  111 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~  111 (568)
                      +.+.+..++.........+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            45566677777777777777766 4567999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI  191 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  191 (568)
                      ++..+                   ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+...++
T Consensus        81 ~~~~~-------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  135 (375)
T 2gfp_A           81 VAVTT-------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV  135 (375)
T ss_dssp             HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred             HHHHh-------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence            98887                   568889999999999999999999999999999988      99999999999999


Q ss_pred             hHHHhhhhhhheeccccchhhhhHHHHHHHHHHH
Q 008355          192 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       192 g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~  225 (568)
                      |..++|.+++++.+..||++.|++.++..++..+
T Consensus       136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999989999999887766554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.88  E-value=1e-23  Score=220.96  Aligned_cols=396  Identities=8%  Similarity=-0.047  Sum_probs=222.6

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|+.+.+....++....+....++++.|+++++|+|..+.|++.+.+.++..++++++|+++||+ |||++++++.++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~   84 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            34566677777777777777889999999999999999999999999999999999999999999 99999998887665


Q ss_pred             HHHHHH---HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008355          108 LGMTLL---TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW  184 (568)
Q Consensus       108 i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (568)
                      ++...+   ......                  ...++.++++.+++.|...+...+...++.++..+    .|+..++.
T Consensus        85 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~  142 (417)
T 2cfq_A           85 VMFAPFFIFIFGPLL------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR  142 (417)
T ss_dssp             SCHHHHHHHTHHHHH------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred             HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence            432211   222000                  00123345555555544444444444444432211    16777777


Q ss_pred             HHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCC
Q 008355          185 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA  264 (568)
Q Consensus       185 ~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (568)
                      .+...++|..++|.+++++.+ .+|++.|++.++..++..+..+..+++    +++..+                  .++
T Consensus       143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~  199 (417)
T 2cfq_A          143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------VAN  199 (417)
T ss_dssp             HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------ccc
Confidence            777889999999999998876 589999987765533333222111111    100000                  000


Q ss_pred             cchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhh
Q 008355          265 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVY  344 (568)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (568)
                      .         ++   .      +.++....+                 ++    +..++ ++..............+..+
T Consensus       200 ~---------~~---~------~~~~~~~~~-----------------~~----~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (417)
T 2cfq_A          200 A---------VG---A------NHSAFSLKL-----------------AL----ELFRQ-PKLWFLSLYVIGVSCTYDVF  239 (417)
T ss_dssp             S---------SS---S------CCCCCCHHH-----------------HH----HHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             c---------cc---c------ccccccHHH-----------------HH----HHhcC-CchhhHHHHHHHHHHHHHHH
Confidence            0         00   0      000000000                 00    00001 11111111111111111122


Q ss_pred             -ccccceeEeecccccCCCCCCcc-cCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 008355          345 -SQMSTMFVLQGNTMDQHMGPNFK-IPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS  422 (568)
Q Consensus       345 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~  422 (568)
                       ++++.++...   ....   +.. ...+.....+.+..++...+.++    +.||.       ++++.+..+.++.+++
T Consensus       240 ~~~~~~~~~~~---~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~-------g~~~~l~~~~~~~~~~  302 (417)
T 2cfq_A          240 DQQFANFFTSF---FATG---EQGTRVFGYVTTMGELLNASIMFFAPL----IINRI-------GGKNALLLAGTIMSVR  302 (417)
T ss_dssp             HHHHHHHHHHT---SSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---Hhcc---CCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------cHHHHHHHHHHHHHHH
Confidence             1222222110   0000   000 00112222222333333444444    45553       3334566677666666


Q ss_pred             HHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHH-HHHHHHHHH
Q 008355          423 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL-SLTTVAVGN  501 (568)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~  501 (568)
                      ++.....                    .+.+.++....+.+++.....+..+.++.|..|++.||++.++ ++..+.+|+
T Consensus       303 ~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~  362 (417)
T 2cfq_A          303 IIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM  362 (417)
T ss_dssp             HHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH
Confidence            5444321                    1334444445556666666667778999999999999999999 588889999


Q ss_pred             HHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceecc
Q 008355          502 YLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK  562 (568)
Q Consensus       502 ~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~  562 (568)
                      .++|.+.|.+.+..                ++...|.+.+++++++.++.++..|++++.+
T Consensus       363 ~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          363 IFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            99999999876532                2345678888888888877766666655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.43  E-value=5e-13  Score=140.37  Aligned_cols=179  Identities=14%  Similarity=0.139  Sum_probs=150.0

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc-cCchHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY-MGRFWTIASFSIIY  106 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~-~Grk~~~~~~~~~~  106 (568)
                      .|.++.+++..++..+.++++..++|.|+++.+|++..+.+++.+...++..++.++.|+++||+ .|||+.+.++.++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            35678888888999999999999999999988999999999999999999999999999999995 37888887776665


Q ss_pred             H-HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          107 C-LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       107 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      . ++.+++.+.   +.              .+.+.+.+..++.|++.+...+....++.|.+|+++      |+++++++
T Consensus       331 ~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~  387 (451)
T 1pw4_A          331 VTIATIVYWMN---PA--------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  387 (451)
T ss_dssp             HHHHHHHTTSC---CT--------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred             HHHHHHHHHHh---cc--------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence            5 555444433   11              246667777788899888888888899999999988      99999999


Q ss_pred             HHHHHH-hHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008355          186 YLSINI-GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS  229 (568)
Q Consensus       186 ~~~~~i-g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~  229 (568)
                      +...++ |..++|.+.+++.+..||+..|++.++..+++.++.+.
T Consensus       388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999 99999999999999999999999888776666655444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.41  E-value=1.1e-12  Score=137.21  Aligned_cols=169  Identities=16%  Similarity=0.181  Sum_probs=137.9

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNY-LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      .|.++..++..++....++.+..+++.| +++.+|.+..+.+...+.+.++..++.++.|+++||+ |||+.+.++.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            3456777777888888888899999999 8888899999999999999999999999999999999 9999999999888


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY  186 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (568)
                      +++.++....                   .+... .+..++.|++.+...|...++..|.+|++       ++.+.++..
T Consensus       336 ~~~~~~~~~~-------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  388 (438)
T 3o7q_A          336 MALCLISAFA-------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV  388 (438)
T ss_dssp             HHHHHHHHHC-------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH
T ss_pred             HHHHHHHHHc-------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH
Confidence            8887777665                   23333 33447788999999999999989988843       555666655


Q ss_pred             HHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHH
Q 008355          187 LSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVV  225 (568)
Q Consensus       187 ~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~  225 (568)
                       ...+|..++|.+.|++.+..| ++..|++.++..++.++
T Consensus       389 -~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             -HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence             567999999999999999998 99999877655444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.34  E-value=1.7e-12  Score=135.53  Aligned_cols=177  Identities=7%  Similarity=-0.004  Sum_probs=131.1

Q ss_pred             eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC---hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008355           30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQG---NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY  106 (568)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~  106 (568)
                      ..+...+..++....++....++|.|+.+.++..   ....+...+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~  299 (417)
T 2cfq_A          221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence            3444444444545555566677888887665532   34456667777778888999999999999 9999998888877


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh-H
Q 008355          107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-F  185 (568)
Q Consensus       107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~  185 (568)
                      +++..+.++.                   .+.+.+++..++.+++.+...+....+++|.+|++.      |+++.++ +
T Consensus       300 ~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~  354 (417)
T 2cfq_A          300 SVRIIGSSFA-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCF  354 (417)
T ss_dssp             HHHHHHHTTC-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred             HHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHH
Confidence            7766555543                   235556666666777766666677889999999887      9999998 5


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCc
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR  232 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  232 (568)
                      +...++|+.++|.++|++.+..|++..|.+.++..+++.++.+...+
T Consensus       355 ~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          355 CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             TTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            88888999999999999988888988888877776666655444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.19  E-value=5.4e-11  Score=126.50  Aligned_cols=185  Identities=11%  Similarity=0.010  Sum_probs=137.3

Q ss_pred             ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHH-----HHHHH
Q 008355           31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA-----SFSII  105 (568)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~-----~~~~~  105 (568)
                      .+.+++..++....+.....+++.|+++.++.+..+.+...+...+...++.++.|+++||+ |||+...     .+.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            34455555666666667778889999988888878889999999999999999999999999 9886554     66666


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008355          106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF  185 (568)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (568)
                      .+++..++........          .+...+.+.+++..++.|++.+...+....++.|.+|++.      |+++.+++
T Consensus       364 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  427 (491)
T 4aps_A          364 AGLSFLLMAIPGALYG----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMW  427 (491)
T ss_dssp             HHHHHTTTHHHHHHCC----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHH
T ss_pred             HHHHHHHHHHHHHhcC----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence            6666665554321100          0011345667777888999999999999999999999998      99999999


Q ss_pred             HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCce
Q 008355          186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRL  233 (568)
Q Consensus       186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  233 (568)
                      +...++|..++|.+.+++.+ .++.+.|++.+...+++.+..+...++
T Consensus       428 ~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          428 FLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988865 466777777766666665555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.05  E-value=5.5e-10  Score=118.59  Aligned_cols=181  Identities=10%  Similarity=0.017  Sum_probs=123.4

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT  111 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~  111 (568)
                      ........+..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+....+++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~  357 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF  357 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence            3444444444444333444444556667888888777777788888999999999999999 999999999888888777


Q ss_pred             HHHHhhhccCCCCCCCCCCCCCCCchhHHHHH-HHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHH
Q 008355          112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFV-ALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN  190 (568)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (568)
                      .++.......              .....+.. ..+..+++ .+..|....+.+|.+|.+.      |+++.++.+...+
T Consensus       358 ~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~  416 (491)
T 4gc0_A          358 SLGTAFYTQA--------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQW  416 (491)
T ss_dssp             HHHHHHHTTC--------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHH
T ss_pred             HHHHHHhccc--------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHH
Confidence            6655422111              22222222 22222232 2344677789999999999      9999999999999


Q ss_pred             HhHHHhhhhhhheec------cccchhhhhHHHHHHHHHHHHHHhcCcee
Q 008355          191 IGALVASSVLVWIQM------NVGWGWGFGIPAVAMAIAVVFFFSGSRLY  234 (568)
Q Consensus       191 ig~~~~p~~~~~i~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  234 (568)
                      +|+.+++.+.+.+.+      ..++.+.|++.++..+++.+..++..||.
T Consensus       417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            999999887766544      24566777777777666666665555543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.92  E-value=1.2e-10  Score=119.14  Aligned_cols=164  Identities=12%  Similarity=-0.024  Sum_probs=128.2

Q ss_pred             ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH-HH
Q 008355           29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII-YC  107 (568)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~-~~  107 (568)
                      |.++...+..++....++....++|.|+++.+|.+..+.+...+...++..++.++.|+++||+ |++  +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4567777888888888889999999999988999999999999999999999999999999999 772  2223222 22


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      .+..+...... +.              .+.+.+++..++.|++.+...+...+++.|.+| ++      |+++.++.+.
T Consensus       276 ~~~~~~~~~~~-~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~  333 (375)
T 2gfp_A          276 AGLLMWIPDWF-GV--------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGG  333 (375)
T ss_dssp             TSSSSSHHHHH-HH--------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHH
T ss_pred             HHHHHHHHhhh-cc--------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHH
Confidence            22221111100 00              245667777888899999999999999999998 66      9999999999


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHH
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPA  217 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~  217 (568)
                      ..++|..++|.+.+.+.+..+|...+.+.+
T Consensus       334 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          334 LQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999988777887776644

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.14  E-value=4.1e-06  Score=89.40  Aligned_cols=113  Identities=14%  Similarity=0.089  Sum_probs=84.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhH
Q 008355          407 TQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMR  486 (568)
Q Consensus       407 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r  486 (568)
                      ++++.+.++.++.+++.+......                   .+.+.++...++.|++.+...|...+++.|.+|++.|
T Consensus        83 g~r~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r  143 (524)
T 2xut_A           83 GKYNTILWLSLIYCVGHAFLAIFE-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK  143 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch
Confidence            444577788888888777665432                   1455667777888999999999999999999999999


Q ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008355          487 SLCSAL---SLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWI  554 (568)
Q Consensus       487 g~~~g~---~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~  554 (568)
                      +.+.+.   .+....+|..+++.+.+.+.+..      +|          +..|++.+++.+++.+.+++.
T Consensus       144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~----------~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA----------AVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----------HHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----------HHHHHHHHHHHHHHHHHHHHh
Confidence            877766   88889999999999888776432      34          456777777777666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	568
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 22/229 (9%)

Query: 1   MAEEDIYTKDGTVDIHKKPANKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQL 60
               D Y +    ++  K    +     K   +I        L  YG+      YL++  
Sbjct: 221 NDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVK 280

Query: 61  NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 120
           +     +S     +        L+  +++D              +  + +  +    + +
Sbjct: 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA 340

Query: 121 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 180
           G                  V  + + +I     G    +     +         ++   +
Sbjct: 341 G---------------NPTVDMICMIVIGFLIYGPVMLIGLHALELAP------KKAAGT 379

Query: 181 FFNWFYLSINIGALVASSVLV-WIQMNVGWGWGFGIPAVAMAIAVVFFF 228
              +  L   +G  VA+S +V +     GW  GF +      +AV+   
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	568
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.38
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.31

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.7e-28  Score=251.07  Aligned_cols=177  Identities=15%  Similarity=0.110  Sum_probs=142.7

Q ss_pred             hhHhhHHHHHHHHHHH---HHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHH
Q 008355           32 RFILGNECCERLAYYG---MSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL  108 (568)
Q Consensus        32 ~~~~~~~~~~~~~~~~---~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i  108 (568)
                      |.++...++..+.+|.   ....+.++++ ++|+|..+.|++.+++.++..++.+++|+++||+ |||+++.++.++.++
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4444444444444443   2344455666 5899999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHH
Q 008355          109 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS  188 (568)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (568)
                      +.++++++....               .+.+.+++.|++.|++.|...++..++++|++|+++      |++++++.+.+
T Consensus       102 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~  160 (447)
T d1pw4a_         102 VMLFMGFVPWAT---------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCA  160 (447)
T ss_dssp             HHHHHHHCHHHH---------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHH
T ss_pred             HHhhccccchhh---------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccc
Confidence            998887763222               256789999999999999999999999999999988      99999999999


Q ss_pred             HHHhHHHhhhhhhheecc-ccchhhhhHHHHHHHHHHHHHHhcC
Q 008355          189 INIGALVASSVLVWIQMN-VGWGWGFGIPAVAMAIAVVFFFSGS  231 (568)
Q Consensus       189 ~~ig~~~~p~~~~~i~~~-~g~~~~f~~~~~~~~~~~~~~~~~~  231 (568)
                      .++|..++|.+++.+... .+|++.|++.++..++..++.+...
T Consensus       161 ~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         161 HNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             cchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence            999999999988876654 4799999988766655554444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.8e-24  Score=220.74  Aligned_cols=399  Identities=8%  Similarity=-0.072  Sum_probs=234.1

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|+.|.+.+..++..+.+....++++.|+++++|+|..++|++.+++.++..+++++.|+++||+ ||||+++++.....
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~   84 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            46788888888999999888889999999999999999999999999999999999999999999 99999999988888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      ++...+......+.               .....++.+.+.+.+.+...+.......+..++++    .++....+....
T Consensus        85 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  145 (417)
T d1pv7a_          85 VMFAPFFIFIFGPL---------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARM  145 (417)
T ss_dssp             HTHHHHHHHTHHHH---------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCHHHHHH
T ss_pred             HHHHHHHHhhhhhh---------------HHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHHHHHhh
Confidence            88877776522111               11223334444444444433333333333332221    125667777888


Q ss_pred             HHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcch
Q 008355          188 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS  267 (568)
Q Consensus       188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (568)
                      ....+..++|.+++.+.+. +|+..+........+..+......++.+...++.++..                      
T Consensus       146 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  202 (417)
T d1pv7a_         146 FGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG----------------------  202 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH----------------------
T ss_pred             hhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh----------------------
Confidence            8889999999998888764 44445544444333333333333322111111110000                      


Q ss_pred             hhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhhccc
Q 008355          268 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQM  347 (568)
Q Consensus       268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (568)
                               +..       .  ..........                ..  ....................+.......
T Consensus       203 ---------~~~-------~--~~~~~~~~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (417)
T d1pv7a_         203 ---------ANH-------S--AFSLKLALEL----------------FR--QPKLWFLSLYVIGVSCTYDVFDQQFANF  246 (417)
T ss_dssp             ---------SCC-------C--CCCHHHHHHH----------------TT--SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------hhc-------c--cccccccccc----------------cc--cccccchhhhhHHHHHHHHhhhcccccc
Confidence                     000       0  0000000000                00  0000111111111111111111111110


Q ss_pred             cceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008355          348 STMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAG  427 (568)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  427 (568)
                      ....       ....+ ..............+...+...+.    .++.+|       .++.+.+.++.++.+++.+...
T Consensus       247 ~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~r-------~~~~~~~~~~~~~~~~~~~~~~  307 (417)
T d1pv7a_         247 FTSF-------FATGE-QGTRVFGYVTTMGELLNASIMFFA----PLIINR-------IGGKNALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             HTTS-------SSCHH-HHHHHHHHHHHHHHHHHHHHHTTH----HHHHHH-------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc-------ccccc-cchhhhcccccccccccccchhhh----hhhhcc-------cccccchhhhHHHHHHhhhccc
Confidence            0000       00000 000000111111222222233333    334555       3444567778777777776665


Q ss_pred             HHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHH-HHHHHHHHHHHHH
Q 008355          428 ILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS-LTTVAVGNYLSTL  506 (568)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~lg~~  506 (568)
                      ...                    +.+..+...++.+++.+...+..++++.|..|++.|+++.|+. ++...+|..+++.
T Consensus       308 ~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~  367 (417)
T d1pv7a_         308 FAT--------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV  367 (417)
T ss_dssp             TCC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             ccc--------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332                    5666777788889999999999999999999999999999985 5677899999999


Q ss_pred             HHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhcee
Q 008355          507 LVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY  560 (568)
Q Consensus       507 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~  560 (568)
                      +.|.+.+..+                ++..|++.++++++..++.++..++.+.
T Consensus       368 ~~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         368 LAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            9999877542                2456788888888888777777665544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3e-13  Score=138.97  Aligned_cols=179  Identities=15%  Similarity=0.077  Sum_probs=140.6

Q ss_pred             cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008355           28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC  107 (568)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~  107 (568)
                      .|.++.+....++.....++...+++.|+.+.++.+..+.+.......+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            45677788888888899999999999999999999999999999999999999999999999999 88765554444333


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008355          108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL  187 (568)
Q Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (568)
                      +...........+              ..+.+..++..++.|++.++..+....+..|.+|++.      |+++.++.+.
T Consensus       327 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~  386 (447)
T d1pw4a_         327 LVTIATIVYWMNP--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGL  386 (447)
T ss_dssp             HHHHHHHHTTSCC--------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence            3332222221111              1456667777778888888888888999999999988      9999999888


Q ss_pred             HHHH-hHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHH
Q 008355          188 SINI-GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF  227 (568)
Q Consensus       188 ~~~i-g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~  227 (568)
                      ..++ |..++|.+.+++.+.+||+..|++.+...+++.++.
T Consensus       387 ~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         387 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            8777 567789999999999999999887766555554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=5.6e-13  Score=134.25  Aligned_cols=145  Identities=8%  Similarity=-0.013  Sum_probs=122.4

Q ss_pred             CCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHH
Q 008355           61 NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAV  140 (568)
Q Consensus        61 g~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (568)
                      +.+....+.......++..++.++.|++.||+ |+|+.+.++.++.+++.+.....                   ++.+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~  314 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA-------------------TSALE  314 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC-------------------CCHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc-------------------cccch
Confidence            33455667777788888899999999999999 99999999999888888887766                   45777


Q ss_pred             HHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh-HHHHHHHhHHHhhhhhhheeccccchhhhhHHHHH
Q 008355          141 TFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVA  219 (568)
Q Consensus       141 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~  219 (568)
                      +++..++.|++.+...+...+++.|.+|++.      |++++++ .++...+|..++|.+.|++.+.+|++..|++.++.
T Consensus       315 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~  388 (417)
T d1pv7a_         315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV  388 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence            8888889999999999999999999999998      9999997 45677899999999999999999999999888766


Q ss_pred             HHHHHHHHHhcC
Q 008355          220 MAIAVVFFFSGS  231 (568)
Q Consensus       220 ~~~~~~~~~~~~  231 (568)
                      .++..++..+..
T Consensus       389 ~~~~~~~~~~~l  400 (417)
T d1pv7a_         389 ALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhh
Confidence            665555544443