Citrus Sinensis ID: 008380

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------
MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMVI
ccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccEEEccccEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEc
msgkgggggvgkgnngissipagSRKIVQSLKEIVNCPESEIYAMLKEcnmdpneavnrllsqdpfhevkskrdkrkeskdttdsrsrgasntsnrggrggtdrygvrsgaayftsnesgtlqskpaykkengthgyagssssaagvvannmnqrppfysddmptenktlevvsgdgissssqpssgfqsswlgvpgqvSMADIvkmgrphnkapphknvnnhhvlappaavshqelhssqghskvsefnsepevatsqhvspndewpsiehppamssvlegsaqsdlytkpahselytnpsnlsvdrtDQQIEAQLdeveeeedgpheipktnhvgsapvssrnmqednsggsslfennlynnmssyqphrhafehdeahdgtsvSAKLQQLnlqnddreapveedspsviipnhlqvhssdcshlsfgsfgtgidsafsgpfasrplknnleersetadapsighsdarnpeyygdehlrstsdanianrpnvtagdydspavsqpsevlKQESVEALQEnqysfpssapgynyenaQQLNSAFAHQQAssqmqnlapfssmmvi
msgkgggggvgkgnngissipagSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRllsqdpfhevkskrdkrkeskdttdsrsrgasntsnrggrggtdrygVRSGAAyftsnesgtlqsKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELytnpsnlsvdrTDQQIEAQLDEVEeeedgpheipktnhvgsapvssrNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERsetadapsighsdarNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQmqnlapfssmmvi
MSgkgggggvgkgnngISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVkskrdkrkeskdttdsRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYagssssaagvvaNNMNQRPPFYSDDMPTENKTLEVVsgdgissssqpssgfqssWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLDeveeeeDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMVI
**************************IVQSLKEIVNCPESEIYAMLKECN**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IPNHLQVHSSDCSHLSFGSFGTGI***********************************************************************************************************************************
***********************SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************VIIPNHLQVHSSDCSHLSFGS**********************************************************************************************************************************S*MMVI
**********GKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPF**********************************GTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVV****************SSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPA************************************WPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLD**********EIPKTNHVGS**************GSSLFENNLYNNMSSYQPHRHAFEH*********SAKLQQLNLQ***********SPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNL***********IGHSDARNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSA*********MQNLAPFSSMMVI
********************P*GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKR****************************************************************************************************************************************************************************************************************************************************************************************************************************************APVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGT***********************************************************************************************SAPG**********************************
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MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSxxxxxxxxxxxxxxxxxxxxxPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query567
255557423 849 conserved hypothetical protein [Ricinus 0.970 0.647 0.628 0.0
224116450 911 predicted protein [Populus trichocarpa] 0.952 0.592 0.588 1e-179
359483606 866 PREDICTED: uncharacterized protein LOC10 0.936 0.613 0.601 1e-178
297740637 799 unnamed protein product [Vitis vinifera] 0.832 0.590 0.545 1e-153
356511015 846 PREDICTED: uncharacterized protein LOC10 0.908 0.608 0.526 1e-134
356528381 837 PREDICTED: uncharacterized protein LOC10 0.915 0.620 0.506 1e-132
356532397 838 PREDICTED: uncharacterized protein LOC10 0.908 0.614 0.509 1e-127
356558027 839 PREDICTED: uncharacterized protein LOC10 0.892 0.603 0.501 1e-124
449433553 845 PREDICTED: uncharacterized protein LOC10 0.911 0.611 0.485 1e-119
449505951 844 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.910 0.611 0.479 1e-117
>gi|255557423|ref|XP_002519742.1| conserved hypothetical protein [Ricinus communis] gi|223541159|gb|EEF42715.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/570 (62%), Positives = 432/570 (75%), Gaps = 20/570 (3%)

Query: 1   MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60
           MSGK      GKGN+GIS IPAGSRK+VQSLKEIVNCPE EIYAMLK+CNMDPNEAVNRL
Sbjct: 1   MSGKAAINN-GKGNSGISGIPAGSRKMVQSLKEIVNCPEPEIYAMLKDCNMDPNEAVNRL 59

Query: 61  LSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESG 120
           LSQDPFHEVKSKR+K+KE+KDTT+ RSR A+N ++R GR G DRYG R G++ F+SN+ G
Sbjct: 60  LSQDPFHEVKSKREKKKETKDTTEPRSRVANNATHRAGRVGADRYG-RGGSSQFSSNDPG 118

Query: 121 TLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISS 180
               KPAYKKENGT+  +  SSSA  +   N+N+RP   SD +  ENK L V + DG+S 
Sbjct: 119 VSHGKPAYKKENGTNA-SAGSSSAPSMAGTNINRRPILNSDLVAAENKLLTVGASDGVSL 177

Query: 181 SSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKA-PPHKNVNNHHVLAPPAAVSHQELHS 239
           SSQP++GFQS W+GVPGQVSMADIVKMGRPHNKA PPH +VN+ H  APP    + +LH 
Sbjct: 178 SSQPTAGFQSPWVGVPGQVSMADIVKMGRPHNKAMPPHHSVNHRHPAAPPLTALNHDLHL 237

Query: 240 SQGHS-KVSEFNSEPEVATSQHVSPNDEWPSIEHPPA--MSSVLEGSAQSDLYTKPAHSE 296
           S+ +S KVSE N+EPEV  SQ V  NDEWPSIE P A  M  VLE          P+ SE
Sbjct: 238 SENYSAKVSEVNAEPEVTASQLVHANDEWPSIE-PSAVSMPPVLEA---------PSDSE 287

Query: 297 LYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSL 356
           L T+PSNL +DR +Q ++++LD+ +  ED   E    NHVG   VSSR ++ED++ GSS+
Sbjct: 288 LCTDPSNLPLDRVNQHMQSELDDTQSTEDDHIETFNVNHVGPTSVSSRTIKEDDAVGSSM 347

Query: 357 FENNLYNNMSSYQPHRHAFEHDEAHDG-TSVSAKLQQLNLQNDDREAPVEEDSPSVIIPN 415
           FE+NLY NM SYQ HRHAFEH EA DG +SV+A LQ L+LQ +D+ A  +ED+PSVIIPN
Sbjct: 348 FESNLYGNMGSYQTHRHAFEH-EAEDGASSVAANLQHLSLQGEDQAASSDEDNPSVIIPN 406

Query: 416 HLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPEY 475
           HLQVH+ DCSHLSFGSFG+GI SAF G FASRPLKNNLEE SE  DA S  HSDARN EY
Sbjct: 407 HLQVHAQDCSHLSFGSFGSGIGSAFPGAFASRPLKNNLEETSEVVDASSAVHSDARNTEY 466

Query: 476 YGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYN 535
           YGDEHLR+ +D N+ +R  V+ G+YDSPA  QP EVLK+E+ EA Q NQY+FPSSA GY 
Sbjct: 467 YGDEHLRNAADDNLIHRAGVSPGNYDSPAGPQP-EVLKEETPEAAQGNQYAFPSSASGYT 525

Query: 536 YENAQQLNSAFAHQQASSQMQNLAPFSSMM 565
           +EN+QQLN+AF++ Q SSQMQN+ PFS++M
Sbjct: 526 FENSQQLNAAFSNPQTSSQMQNMTPFSNVM 555

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116450|ref|XP_002317304.1| predicted protein [Populus trichocarpa] gi|222860369|gb|EEE97916.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483606|ref|XP_002271969.2| PREDICTED: uncharacterized protein LOC100245196 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740637|emb|CBI30819.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511015|ref|XP_003524227.1| PREDICTED: uncharacterized protein LOC100776017 [Glycine max] Back     alignment and taxonomy information
>gi|356528381|ref|XP_003532782.1| PREDICTED: uncharacterized protein LOC100803908 [Glycine max] Back     alignment and taxonomy information
>gi|356532397|ref|XP_003534759.1| PREDICTED: uncharacterized protein LOC100783978 [Glycine max] Back     alignment and taxonomy information
>gi|356558027|ref|XP_003547310.1| PREDICTED: uncharacterized protein LOC100782498 [Glycine max] Back     alignment and taxonomy information
>gi|449433553|ref|XP_004134562.1| PREDICTED: uncharacterized protein LOC101211388 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449505951|ref|XP_004162612.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224560 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query567
TAIR|locus:2013713 831 AT1G29370 "AT1G29370" [Arabido 0.901 0.614 0.311 2.8e-50
TAIR|locus:2117671 758 AT4G18150 "AT4G18150" [Arabido 0.333 0.249 0.380 2e-49
TAIR|locus:2013693 831 AT1G29350 "AT1G29350" [Arabido 0.904 0.617 0.307 1e-48
TAIR|locus:2170433607 AT5G46380 "AT5G46380" [Arabido 0.176 0.164 0.415 3.8e-18
TAIR|locus:2091087 841 AT3G07660 "AT3G07660" [Arabido 0.190 0.128 0.406 4.3e-17
TAIR|locus:2088202 848 AT3G13990 "AT3G13990" [Arabido 0.081 0.054 0.553 1.4e-10
TAIR|locus:2090019567 GIP1 "GBF-interacting protein 0.188 0.188 0.295 1.7e-05
TAIR|locus:2013713 AT1G29370 "AT1G29370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 528 (190.9 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 174/558 (31%), Positives = 260/558 (46%)

Query:    17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVXXXXXXX 76
             I  IP+GSRKIVQSL EIVN PE+EIYAMLKECNMDPNE V+RLLSQDPFHEV       
Sbjct:    14 IQDIPSGSRKIVQSLTEIVNSPEAEIYAMLKECNMDPNETVSRLLSQDPFHEVKSKKEKK 73

Query:    77 XXXXXXXXXRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHG 136
                      R RGA+NT NRG RGG+ RY  RSG+ +F+S +SG  Q K   KKE+GT G
Sbjct:    74 KETRDISDSRPRGANNTYNRGARGGSARYAGRSGSTHFSSTDSGNFQGKSTNKKESGTQG 133

Query:   137 YXXXXXXXXXXXXNNMNQRPPFYSDDMPTENKTLEVVXXXXXXXXXXXXXXXXXXWLGVP 196
             Y             N  Q P  +S+ + TENK L  V                  W G P
Sbjct:   134 YTSSWSSASGVA--NTYQTP--HSEPVATENK-LPPVTLGDGISSSQSASGHQTAWFGAP 188

Query:   197 GQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVS-EFNS-EPE 254
             GQ SMA++VKMGRP NK    +NVN        + ++H+   S+   + V  E+ S E  
Sbjct:   189 GQRSMAEVVKMGRPQNKTTK-QNVNMG------SEINHEHKVSANHQAPVKDEWPSIEKP 241

Query:   255 VA---TSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQ 311
             +A   +S  V+P +    + + PA       S + D Y K     ++   S  S  R   
Sbjct:   242 LAPSTSSLSVAPAES--EVRNGPADFQ----SDRGDQYLKDRLENIHIAESGPSESRKVD 295

Query:   312 QIEA---QLDXXXXXXDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFEN-NLYNNMSS 367
              ++A   Q D      +      +T    S PV     ++D S GS+ F+  + ++   S
Sbjct:   296 HVQADSVQEDESVVSSEIDDNPYQTQ---SHPVEHHKDEDDVSSGSASFQQLDSHDQEVS 352

Query:   368 YQPHRHAF---EHDEAHDGTSVSAKLQQLNLQN-DDREAPVEEDSPSVIIPNHLQVHSSD 423
             ++  R A     H   H  T   A+L   +      R      ++ S + P   Q+  SD
Sbjct:   353 HEKDRPAVVIPNHLLIH--TEECAQLSFGSFGGFGSRPLSNSVEATSDVAP---QIEHSD 407

Query:   424 CSHLSFGSFGTG-IDSAFSGPFASRPLKNNLEERSETA-DAPSIGHSD-ARNPEYYGDEH 480
               +  F  +G   + S  +G     P   N ++  ET  +     +S+ A+  +Y   + 
Sbjct:   408 ARNTEF--YGDEHLGSTTNGNMVHTPATGNYDDSLETRREVLKQENSEGAQEHQYTFTQS 465

Query:   481 LRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVE-ALQENQYSFPSSAPGYNYENA 539
              +  +  N A +  + +  YD+   +  +++   +S+   +Q   +S P++      +NA
Sbjct:   466 EQGYAYEN-AKQQQMNSA-YDASHTNSQNQMHNLDSLSNVMQGYSHSVPNTLLAQTAQNA 523

Query:   540 QQLNSAFAHQQASSQMQN 557
             ++L+  ++   A   MQ+
Sbjct:   524 RELDFQYSPFSAQQSMQS 541
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2117671 AT4G18150 "AT4G18150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013693 AT1G29350 "AT1G29350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170433 AT5G46380 "AT5G46380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091087 AT3G07660 "AT3G07660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088202 AT3G13990 "AT3G13990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090019 GIP1 "GBF-interacting protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XI000498
hypothetical protein (911 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query567
pfam0697260 pfam06972, DUF1296, Protein of unknown function (D 2e-29
>gnl|CDD|115617 pfam06972, DUF1296, Protein of unknown function (DUF1296) Back     alignment and domain information 
 Score =  109 bits (275), Expect = 2e-29
 Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 20 IPAGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE 78
          IPA  RK +QS+KE+V    +++IYAMLKECNMDPNE V +LLSQD FHEVKSKR+K+KE
Sbjct: 1  IPAELRKTIQSIKEVVGKHSDADIYAMLKECNMDPNETVQKLLSQDTFHEVKSKREKKKE 60

This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function. Structural modelling suggests this domain may bind nucleic acids. Length = 60

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 567
PF0697260 DUF1296: Protein of unknown function (DUF1296); In 99.95
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 97.62
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 97.35
smart0054643 CUE Domain that may be involved in binding ubiquit 96.98
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 96.89
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 96.85
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 95.82
PRK06369115 nac nascent polypeptide-associated complex protein 94.14
TIGR00264116 alpha-NAC-related protein. This hypothetical prote 93.57
PRK09377290 tsf elongation factor Ts; Provisional 93.22
TIGR00601378 rad23 UV excision repair protein Rad23. All protei 93.18
CHL00098200 tsf elongation factor Ts 92.72
TIGR00116290 tsf translation elongation factor Ts. This protein 92.32
PF1154753 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro 92.27
COG1308122 EGD2 Transcription factor homologous to NACalpha-B 91.58
PRK12332198 tsf elongation factor Ts; Reviewed 91.47
PF0347439 DMA: DMRTA motif; InterPro: IPR005173 This region 91.02
PF0893879 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This 89.62
COG0264296 Tsf Translation elongation factor Ts [Translation, 89.35
KOG1071340 consensus Mitochondrial translation elongation fac 83.81
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function Back     alignment and domain information 
Probab=99.95  E-value=2e-28  Score=196.52  Aligned_cols=59  Identities=86%  Similarity=1.268  Sum_probs=57.6

Q ss_pred             CCcchHHHHHhhhhccCC-ChHHHHHHHHhcCCCHHHHHHHHhcCCccchhhhchhhhhc
Q 008380           20 IPAGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE   78 (567)
Q Consensus        20 ip~~~rk~Vq~lkEi~~~-seeei~~aL~dCn~DpneAv~rLl~~d~f~eVkkKR~kkKE   78 (567)
                      ||+++||+||.||||+|+ ||+|||+||+|||||||||++|||+||+|||||+||+||||
T Consensus         1 IP~~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD~FheVk~krdkkKE   60 (60)
T PF06972_consen    1 IPAASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQDPFHEVKSKRDKKKE   60 (60)
T ss_pred             CChHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHhhhhccC
Confidence            899999999999999965 99999999999999999999999999999999999999997

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed Back     alignment and domain information
>TIGR00264 alpha-NAC-related protein Back     alignment and domain information
>PRK09377 tsf elongation factor Ts; Provisional Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information
>CHL00098 tsf elongation factor Ts Back     alignment and domain information
>TIGR00116 tsf translation elongation factor Ts Back     alignment and domain information
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin Back     alignment and domain information
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] Back     alignment and domain information
>PRK12332 tsf elongation factor Ts; Reviewed Back     alignment and domain information
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO [] Back     alignment and domain information
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins Back     alignment and domain information
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query567
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 98.99
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 97.55
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 97.36
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 97.35
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 97.3
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 97.3
2dhy_A67 CUE domain-containing protein 1; structural genomi 97.26
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 97.25
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 97.18
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 97.03
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 96.87
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 96.85
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 96.84
1wji_A63 Tudor domain containing protein 3; UBA domain, str 96.62
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 96.48
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 96.44
2di0_A71 Activating signal cointegrator 1 complex subunit 2 96.4
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 95.98
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 95.7
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 95.68
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 95.65
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 95.53
2lva_A129 Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi 94.28
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 95.07
2dna_A67 Unnamed protein product; ubiquitin associated doma 95.04
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 95.04
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 95.01
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 94.98
2qsf_X171 RAD23, UV excision repair protein RAD23; alpha-bet 94.78
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 94.78
1vdl_A80 Ubiquitin carboxyl-terminal hydrolase 25; UBA doma 94.47
2cwb_A108 Chimera of immunoglobulin G binding protein G and 94.44
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 94.02
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 93.87
2qho_B53 E3 ubiquitin-protein ligase EDD1; protein-protein 93.81
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 93.65
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 93.62
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 93.43
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 93.17
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 92.14
2crn_A64 Ubash3A protein; compact three-helix bundle, struc 92.14
2d9s_A53 CBL E3 ubiquitin protein ligase; UBA domain, dimer 91.72
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 91.6
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 91.38
1vek_A84 UBP14, ubiquitin-specific protease 14, putative; U 90.84
2juj_A56 E3 ubiquitin-protein ligase CBL; alpha helix, UBA 90.69
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 90.6
1tr8_A102 Conserved protein (MTH177); chaperones, nascent po 90.52
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 90.4
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 90.21
2ejs_A58 Autocrine motility factor receptor, isoform 2; CUE 90.02
2ekf_A61 Ancient ubiquitous protein 1; CUE, ubiquitin ligas 89.17
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 88.16
4g3o_A58 E3 ubiquitin-protein ligase AMFR; all-helical stru 87.98
1p3q_Q54 VPS9P, vacuolar protein sorting-associated protein 87.7
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 82.63
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 82.49
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 82.37
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
Probab=98.99  E-value=2.2e-10  Score=100.85  Aligned_cols=55  Identities=29%  Similarity=0.383  Sum_probs=49.5

Q ss_pred             CcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcCC----ccchhhhchhh
Q 008380           21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKRDK   75 (567)
Q Consensus        21 p~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~d----~f~eVkkKR~k   75 (567)
                      .++++++|+.|+|++|++++++..||.+||+|+++||++||++.    .|++|+|||.+
T Consensus        36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~~~~kKk~~   94 (104)
T 1wj7_A           36 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGV   94 (104)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCCCS
T ss_pred             cccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCceeeecccccc
Confidence            46889999999999999999999999999999999999999874    69999765544
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens} Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens} Back     alignment and structure
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 567
d1wj7a191 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-li 0.001
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Length = 91 Back     information, alignment and structure

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL----SQDPFHEVKSKRDKRKE 78
           + V+ L +I    + E    L +CN D N A+N LL        +  V  K+    +
Sbjct: 33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQ 90

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query567
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 99.35
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 97.2
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 97.0
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 97.0
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 96.91
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 96.83
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 96.77
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 96.41
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 95.63
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 95.6
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 95.39
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 95.33
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 95.02
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 94.85
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 94.49
d1vdla_80 Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M 94.34
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 94.26
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 92.86
d1whca_64 UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta 89.29
d2cpwa151 Cbl-interacting protein p70, STS1 {Human (Homo sap 88.38
d2di0a163 Activating signal cointegrator 1 complex subunit 2 87.47
d1veka_84 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 83.29
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=2.1e-13  Score=115.22  Aligned_cols=54  Identities=30%  Similarity=0.401  Sum_probs=49.8

Q ss_pred             CcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcCC----ccchhhhchh
Q 008380           21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKRD   74 (567)
Q Consensus        21 p~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~d----~f~eVkkKR~   74 (567)
                      +++++++|++|+|+|+++++|++.||||||+|++.||+.||++.    .|+.++|||.
T Consensus        29 D~~i~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~~~~~~Wet~~kKk~   86 (91)
T d1wj7a1          29 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKG   86 (91)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCCC
T ss_pred             cHHHHHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHHhcCCCCCceeecccccc
Confidence            67899999999999999999999999999999999999999973    8999976543
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure