Citrus Sinensis ID: 008417
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKZ5 | 560 | Folate-biopterin transpor | yes | no | 0.971 | 0.982 | 0.734 | 0.0 | |
| Q55721 | 494 | Folate-biopterin transpor | N/A | no | 0.727 | 0.834 | 0.511 | 1e-113 | |
| Q9SQN2 | 497 | Probable folate-biopterin | no | no | 0.733 | 0.835 | 0.317 | 1e-55 | |
| Q5FV41 | 499 | Probable folate-biopterin | no | no | 0.734 | 0.833 | 0.312 | 4e-53 | |
| F4KIL8 | 492 | Probable folate-biopterin | no | no | 0.699 | 0.804 | 0.315 | 1e-52 | |
| Q8RWQ5 | 491 | Probable folate-biopterin | no | no | 0.727 | 0.839 | 0.295 | 9e-52 | |
| Q9LEV7 | 503 | Probable folate-biopterin | no | no | 0.696 | 0.783 | 0.299 | 8e-40 | |
| Q9XIQ7 | 442 | Probable folate-biopterin | no | no | 0.772 | 0.988 | 0.287 | 9e-36 | |
| F4I5Q2 | 542 | Probable folate-biopterin | no | no | 0.708 | 0.739 | 0.277 | 2e-30 | |
| O22780 | 538 | Probable folate-biopterin | no | no | 0.745 | 0.784 | 0.288 | 4e-29 |
| >sp|Q9SKZ5|FBT1_ARATH Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/568 (73%), Positives = 469/568 (82%), Gaps = 18/568 (3%)
Query: 9 MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKK---KDM 65
M+S + +ISI P Q + L S+++ RR L + A + R RRK K+ +DM
Sbjct: 1 MASRSLFSISISPSQFTV--LPSINN------ERRRLAIAARSHRLSRRKIRKRPPDRDM 52
Query: 66 SVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPS----KSSPHESRYLS 121
S V I RRD E LLD +GD D EG+ T S + P + R LS
Sbjct: 53 SSIVSIPELPRRRDSEESLLLDSRISVAEGDTSNTDVEGDRDTTSSIRTQPPPRKGRNLS 112
Query: 122 NGA-KFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLP 180
+ KF+GV+LSPDN AVAMVYFVQGVLGLARLAV+FYLKDDLHLDPAETAVI+G SSLP
Sbjct: 113 SSRIKFYGVELSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLP 172
Query: 181 WLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSV 240
WL+KPLYGFISDS+PLFGYRRRSYLVLSGLLGA SWSLMA V+SKYSAA ILLGSLSV
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSV 232
Query: 241 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGV 300
AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS+V++YGVRFVFGV
Sbjct: 233 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGV 292
Query: 301 TALLPLITSGVAVLVKEQQVLGPS--RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358
TALLPLITS VAVLV EQ+V+ P+ +++N+ L P F ++SKQNM QLW A+KQPNVFL
Sbjct: 293 TALLPLITSAVAVLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFL 352
Query: 359 PTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418
PTLF+FLWQATPHSDSAMFYFTTN+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPL
Sbjct: 353 PTLFIFLWQATPHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPL 412
Query: 419 RKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAA 478
RKIFL TIFGT LGMTQV LV+G NR+ GISDEWFAIGDSLILTVL+QASFMPVLVLAA
Sbjct: 413 RKIFLVTTIFGTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAA 472
Query: 479 RLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLL 538
RLCPEGMEATLFATLMSISNGGSVLGGL+GAGLTQ FG+T+DSF NL+TLIILCNLSSLL
Sbjct: 473 RLCPEGMEATLFATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILCNLSSLL 532
Query: 539 PLPLIGLLPQDSPDSTSKESEDIEMKSN 566
PLPL+GLLP+DSPD+ +K+ D+EMKSN
Sbjct: 533 PLPLLGLLPRDSPDTLTKDDADVEMKSN 560
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Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q55721|FBT_SYNY3 Folate-biopterin transporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0642 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/430 (51%), Positives = 290/430 (67%), Gaps = 18/430 (4%)
Query: 107 STPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLD 166
STP K E L N + + A+ +YFVQGVLGL+RLAV+F+LKD+L L
Sbjct: 15 STPLKRFLREKVLLGNAPSW-------ELLAILSIYFVQGVLGLSRLAVSFFLKDELGLS 67
Query: 167 PAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESK 226
PA + G + PW++KP+ G +SD++PLFGYRRRSYL LSGL+G+ W L A V S
Sbjct: 68 PAAMGALIGLGAAPWILKPVLGLMSDTVPLFGYRRRSYLWLSGLMGSAGWLLFAAWVSSG 127
Query: 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286
A L +L SLSVA DV+VDS+VVERA+ ES + GSLQSL WG++A GGI+++Y SG
Sbjct: 128 TQAGLVLLFTSLSVAIGDVIVDSLVVERAQRESLAQVGSLQSLTWGAAAVGGIITAYASG 187
Query: 287 SMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ 346
++++ + R VF +TA+ PL+T G A L+ E + + + P K +
Sbjct: 188 ALLEWFSTRTVFAITAIFPLLTVGAAFLISE---VSTAEEEEKP--------QPKAQIKL 236
Query: 347 LWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGV 406
+W+AV+Q + LPTLF+F WQATP ++SA FYFTTNELGF P+FLGRV+ VTSVA L+GV
Sbjct: 237 VWQAVRQKTILLPTLFIFFWQATPSAESAFFYFTTNELGFEPKFLGRVRLVTSVAGLIGV 296
Query: 407 GLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLS 466
GLY FLK +P R I +T+ + LG+T + L+T NR GI D WF++GDS+ILTV
Sbjct: 297 GLYQRFLKTLPFRVIMGWSTVISSLLGLTTLILITHANRAMGIDDHWFSLGDSIILTVTG 356
Query: 467 QASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLA 526
Q +FMPVLVLAARLCP G+EATLFA LMS+ N VL +G+ LT GVT+ FDNLA
Sbjct: 357 QIAFMPVLVLAARLCPPGIEATLFALLMSVMNLAGVLSFEVGSLLTHWLGVTETQFDNLA 416
Query: 527 TLIILCNLSS 536
L+I+ NLS+
Sbjct: 417 LLVIITNLST 426
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Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q9SQN2|FBT3_ARATH Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 230/431 (53%), Gaps = 16/431 (3%)
Query: 136 FAVAMVYFV-QGV-LGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS 193
F V +VY V QG+ GL++++ +Y KD+ + P++ + G +PW+IKPL+G ++D
Sbjct: 51 FGVIIVYGVSQGLGKGLSKVSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDV 110
Query: 194 LPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILL-GSLSVAFSDVVVDSMVV 252
+P+ GYRRR Y +L+G L +S ++ + ALS L+ GS VA +DV +D+ V
Sbjct: 111 VPVLGYRRRPYFILAGFLAMISMMVLWLHTNLHLALALSCLVAGSAGVAIADVTIDACVT 170
Query: 253 ERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVA 312
+ + +++ +QSLC S+ G +V SG +V G + V+G+ +T+G+
Sbjct: 171 QCSISHP-TLAADMQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLG----VTAGLL 225
Query: 313 VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-H 371
V+V PSR + F ++ +W+ + V+ P LF+ L A H
Sbjct: 226 VVVGMVLKESPSRSLGRKHVNDKFLDAGSA----IWKTFQYGEVWRPCLFMLLSAAVSLH 281
Query: 372 SDSAMFYFTTNEL---GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF 428
MFY+ T+ F+ E +G + ++ SL+G+ LY FLKN P R +
Sbjct: 282 IHEGMFYWYTDSKDGPSFSKEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSL 341
Query: 429 GTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEAT 488
G + LV +N K G+ D +F + D + ++S+ ++P+LVL+++LCP GME T
Sbjct: 342 SVLSGFLDLILVLRINLKLGLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGT 401
Query: 489 LFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQ 548
FA LMSI + G ++ G L VT+ FDNL +I++ +L ++P+ L+ L+P
Sbjct: 402 FFALLMSIEHIGHLVSSWGGGVLLHALKVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPN 461
Query: 549 DSPDSTSKESE 559
+ST +E
Sbjct: 462 VDSNSTILPAE 472
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 138/442 (31%), Positives = 233/442 (52%), Gaps = 26/442 (5%)
Query: 136 FAVAMVYFVQGVLG--LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS 193
F V +Y + LG L R+A +Y+KD + P+E+ ++ + +PW+IKPL+G ++D
Sbjct: 47 FGVVSLYGINQGLGGSLGRVATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDV 106
Query: 194 LPLFGYRRRSYLVLSGLLGALSWSLMATIVESK---YSAALSILLGSLSVAFSDVVVDSM 250
LP+FG+ RR Y +L+G+LG +S L+ + S Y A + + S ++A +DV +D+
Sbjct: 107 LPIFGFHRRPYFILAGVLGVVS--LLFISLHSNLHLYLALFWMTISSAAMAIADVTIDAC 164
Query: 251 VVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG 310
+ + S++ +QSLC SS+ G ++ + SG +V G + VFG+ + S
Sbjct: 165 TAYNSI-KHPSLASDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSV 223
Query: 311 VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF--LWQA 368
V ++ E V G S +Q + F ++ K +W +K +V+ P+L+++ L
Sbjct: 224 VGIVFSEPHVPGFSYKQV----NQKFTDAGKA----MWRTMKCSDVWRPSLYMYISLTLG 275
Query: 369 TPHSDSAMFYFTTNELG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANT 426
+ ++FT ++ G F E +G + + S+ S+L LY LK+ P R + L
Sbjct: 276 LNIHEGLFYWFTDSKDGPLFAQETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQ 335
Query: 427 IFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGME 486
+ GM + LV LN KFG+ D F + D ++ ++ + +MP+LVL ++LCP G+E
Sbjct: 336 LLFALSGMLDLILVFRLNLKFGLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIE 395
Query: 487 ATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLL 546
T FA LMSI N G + LG + + VT+ F NL +++ N+ LLPL + L+
Sbjct: 396 GTFFALLMSIDNAGLMTSSWLGGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLV 455
Query: 547 PQDS------PDSTSKESEDIE 562
P+ PD E D E
Sbjct: 456 PKGDQNTFKLPDEIMGEDSDEE 477
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4KIL8|FBT5_ARATH Probable folate-biopterin transporter 5 OS=Arabidopsis thaliana GN=At5g25040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 229/418 (54%), Gaps = 22/418 (5%)
Query: 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS 208
L +A ++Y+KD + P++ +S + + W+I KPL+G ++D LP+FG+ RR Y +L+
Sbjct: 63 LGHVATDYYMKDVQKVQPSQYQALSAITRISWIIFKPLFGILTDVLPIFGFHRRPYFILA 122
Query: 209 GLLGALSWSLMATIVESK---YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGS 265
G++G +S L+ ++S Y A + + S ++A +DV +D+ + + S++
Sbjct: 123 GVIGVVS--LLFISLQSNLHLYLALFWMTISSAAMAIADVTIDACTTYNSN-KHPSLASD 179
Query: 266 LQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSR 325
+QSLC S + G ++ + SG +V G + VFG+ + S V VL E +V G S
Sbjct: 180 MQSLCSLSYSIGELLGFFMSGILVHLVGSKGVFGLLTFTFALVSVVGVLFSEPRVHGFSF 239
Query: 326 RQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQAT--PHSDSAMFYFTTNE 383
+QN F ++ + M W +K +V+ P+L++F+ +A + ++FT ++
Sbjct: 240 KQN--------FTNAMKAM---WRTIKCSDVWQPSLYMFITRALGLDIKEGLFYWFTDSK 288
Query: 384 LG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVT 441
G F E +G + + S+ S+LGV LYN LK+ P RK+FL + GM + LV
Sbjct: 289 DGPLFAQETVGFILSIGSIGSILGVLLYNLRLKDHPFRKLFLWTQLLFALSGMFDLILVL 348
Query: 442 GLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGS 501
LN KFG+ D F + D ++ ++ + ++M + VL +LCP G+E T FA LMSI N G
Sbjct: 349 RLNLKFGLPDYLFIVVDGIVSKMIIRLTWMVIFVLNTKLCPHGIEGTFFALLMSIDNAGL 408
Query: 502 VLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKESE 559
+ LG + + VT+ F NL +++ N+ LLP+ + L+PQ ++ +E
Sbjct: 409 MTSSWLGGKMLHVLKVTRTEFGNLWLAVLVRNVMRLLPICFLFLVPQGDQNTFKLPAE 466
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWQ5|FBT4_ARATH Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 138/467 (29%), Positives = 228/467 (48%), Gaps = 55/467 (11%)
Query: 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLF 197
V ++YF QG AV++ LKD L L P+ + + + PW IKPLYG ISD +P+
Sbjct: 20 VCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWSIKPLYGIISDCIPIG 79
Query: 198 GYRRRSYLVLSGLLGALSWSLMATIVESKYSA---ALSILLGSLSVAFSDVVVDSMVVER 254
G +R YLV+S +L + W ++ S+ S+ + + + +L A +DVV+D+M+ E
Sbjct: 80 GKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLGSAMADVVIDAMIAEA 139
Query: 255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVL 314
R E S +G LQS+ W + A GG+ S G + + +F + +LP + L
Sbjct: 140 VRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFLLFTVLPALQLLSCAL 199
Query: 315 VK------------------EQQVLGPS-------------------------------- 324
V+ E++ L +
Sbjct: 200 VEESPANNEPLPELLDSNEFEEKSLTSNDNYPDTSKSNTRRRKGQKKGKKGDSNGKSETQ 259
Query: 325 RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQAT-PHSDSAMFYFTTNE 383
++Q+ L +F+S K F L A KQP + P + F+ T P+ + MFY+ T
Sbjct: 260 KKQSKSLAS-QWFQSLKAATFGLGRAFKQPIILRPMAWFFIAHITVPNLSTVMFYYQTEV 318
Query: 384 LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGL 443
L FLG + V + + G +YN +L+++ LRK L I + + + LV+
Sbjct: 319 LQLDAAFLGTARVVGWLGLMFGTFIYNRYLQDMTLRKSLLFAHIGLSVTILLDMVLVSRA 378
Query: 444 NRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVL 503
N +G+SD+ + S + ++Q FMP L+L+ RLCP G+E TLFA MSI+N G+ +
Sbjct: 379 NVGYGVSDKTMVLFGSALGDAINQLKFMPFLILSGRLCPPGIEGTLFALFMSINNLGNTV 438
Query: 504 GGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDS 550
G +GAGL L G++ SFDN+ + + + +P+ + L+P+++
Sbjct: 439 GSFMGAGLASLLGISSGSFDNMFMGLAIQVFCTYIPVLFLFLIPKEA 485
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 212/414 (51%), Gaps = 20/414 (4%)
Query: 145 QGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRS 203
QG G + ++ ++Y KD + P+ + G +PW+++P++G +D P+ GY+R+
Sbjct: 69 QGFSGSIFKVVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKP 128
Query: 204 YLVLSGLLGALSWSLMATIVESKYSAAL--SILLG-SLSVAFSDVVVDSMVVERARGESQ 260
Y V+SG+LG +S +A +V K AAL S LLG S ++A +DVV+D+ + + +
Sbjct: 129 YFVVSGVLGLVS--AIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIATNSI-NIR 185
Query: 261 SVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP--LITSGVAVLVKEQ 318
S++ +QSLC S+ G +V SG V G + GV A P ++ G + K
Sbjct: 186 SLAPDIQSLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRS 245
Query: 319 QVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHSDSAMF 377
+ P+++ D + + M + VK P V+ P+L++F+ A + F
Sbjct: 246 STV-PTQKTK---KDTDGLGVAVKGMCK---TVKYPEVWKPSLYMFISLALNISTHEGHF 298
Query: 378 YFTTNELG---FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM 434
Y+ T+ F+ EF+G + V ++AS+ GV +Y+ LK R I + GM
Sbjct: 299 YWYTDPTAGPAFSQEFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGM 358
Query: 435 TQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLM 494
+ + N GI D F I + ++S+ ++P++VL+ RLCP G+E T FA LM
Sbjct: 359 LDLVFIKRWNLTLGIPDSLFVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLM 418
Query: 495 SISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQ 548
I + G + G + FGVT+ F NL +I++ N+ L+ + + L+P
Sbjct: 419 CIDSFGQLASKWGGGFVLHAFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVPD 472
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 220/462 (47%), Gaps = 25/462 (5%)
Query: 106 MSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHL 165
MS+ S + ESR+ N P + + +FVQG G L NF+L + L +
Sbjct: 1 MSSSSDTHAGESRHRRN----------PIRWLLGFGFFVQGFRGFPWLGANFFLTEQLRV 50
Query: 166 DPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES 225
+P+ ++ ++LP + KP+YG +SDS+ FG R Y+ + LL A+SW +A + S
Sbjct: 51 NPSVLQLLQNSANLPMVAKPIYGVVSDSVYFFGQHRIPYIAVGALLQAISWLAIAFLSRS 110
Query: 226 KYSA-ALSI--LLGSLSVAFSDVVVDSMVVERARGE-SQSVSGSLQSLCWGSSAFGGIVS 281
S ALSI LL +L + +V D++V E + + S++ SG L S W S+ GGI+
Sbjct: 111 NVSILALSIYLLLSNLGASLVEVANDAIVAESGKQKTSETQSGELPSFVWMVSSLGGILG 170
Query: 282 SYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSK 341
+ G + + + F V +L L+ V + ++E+ + NLP +PS +
Sbjct: 171 NLLGGIAIKTFSAQSTFLVFGILALLQFLVTINIREKSL-------NLP-ENPSPAGGIR 222
Query: 342 QNMFQLWEAVKQPNVFLPTLFVFLWQAT-PHSDSAMFYFTTNELGFTPEFLGRVKFVTSV 400
+++ L +++P + ++ + A P MF++ T L LG K +
Sbjct: 223 KHLSDLSHVLRKPEISYSIAWIAVSTAVVPVLTGTMFFYQTKFLKIDASLLGISKVFGQI 282
Query: 401 ASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSL 460
A LL YN +LK + RK+ A + ++ + V G+ R G+SD + + S
Sbjct: 283 AMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFFVISDLLFVKGVYRDLGVSDSVYVLFFSG 342
Query: 461 ILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKD 520
L L +P VL ARLCP G E +L A +MS ++ G LG L GVT+D
Sbjct: 343 FLETLFYFKILPFTVLMARLCPPGCEGSLMAFVMSAIALAFIVSGYLGIVLASFVGVTED 402
Query: 521 SFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKESEDIE 562
F + + +PL L + ++ T ++S+ IE
Sbjct: 403 DFSGFTRGLAIEACCVGIPLILTSWIYDEA--ETKEKSKKIE 442
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4I5Q2|FBT8_ARATH Probable folate-biopterin transporter 8, chloroplastic OS=Arabidopsis thaliana GN=At1g04570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 204/415 (49%), Gaps = 14/415 (3%)
Query: 142 YFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRR 201
Y+VQG LA+NF++ L L P+ ++ SLP + KPLYG +SD L + RR
Sbjct: 95 YWVQGSRCFPWLALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSDVLYIGSGRR 154
Query: 202 RSYLVLSGLLGALSWSLMATIVESKY---SAALSILLGSLSVAFSDVVVDSMVVERARGE 258
Y+ + L L+W M ++ S +LL +L + ++V D++V E G
Sbjct: 155 VPYIAIGVFLQVLAWGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKDALVAEY--GL 212
Query: 259 SQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQ 318
++G LQS +SA GG++ + G ++ + F V + L + V++ KE+
Sbjct: 213 RYRING-LQSYALMASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEE 271
Query: 319 QVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHSDSAMF 377
P + S ES K+ + L EA++ + P ++ + A P ++F
Sbjct: 272 SFGLPRIAET-----SSVLESVKKQISNLKEAIQADEISQPLIWAVVSIAMVPLLSGSVF 326
Query: 378 YFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK-IFLANTIFGTALGMTQ 436
+ T L P +G K + + L +Y+ +LK +P+R I + ++G ++ +
Sbjct: 327 CYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGLSI-LLD 385
Query: 437 VFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSI 496
LV +N FGIS+E + + S + +L+Q +P V A +CP+G E ++ + L S
Sbjct: 386 YILVKQINLGFGISNEVYVLCFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTSFLAST 445
Query: 497 SNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSP 551
++ LG GL L G+T ++ NL++ I++ +L++L PL + L+P P
Sbjct: 446 LCLSQIVSAFLGVGLANLIGITSSNYSNLSSGILIQSLAALAPLCFMHLVPMSEP 500
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 211/434 (48%), Gaps = 12/434 (2%)
Query: 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLF 197
A+ Y+VQG+ + LA+NF++ L+L P+ ++ +SLP + KPLYG +SD L +
Sbjct: 88 CALGYWVQGLRCFSWLALNFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYGVLSDVLYIG 147
Query: 198 GYRRRSYLVLSGLLGALSWSLMATIVESKY---SAALSILLGSLSVAFSDVVVDSMVVER 254
G RR Y+ + LL L+W +A ++ S ILL +L + ++V D++V E
Sbjct: 148 GARRVPYISVGVLLQGLAWGSLAIFPGAREVLPSLMAFILLSNLGASITEVSQDALVAEY 207
Query: 255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVF-GVTALLPLITSGVAV 313
G ++G LQS +SA GGI+ + G + R +F TALL L V++
Sbjct: 208 --GLRYQING-LQSYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSL-QLIVSL 263
Query: 314 LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA-TPHS 372
KE+ V P + P S K+ L V+ + P +++ A P
Sbjct: 264 SSKEESVNLPRIGEVTP-EISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIALVPLL 322
Query: 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK-IFLANTIFGTA 431
++F + T L P +G K + + L +Y+ + K +P+R I + ++ +
Sbjct: 323 SGSVFCYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLLYAFS 382
Query: 432 LGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFA 491
L + LV +N FGIS+ F + S + +L+Q +P VL A +CP G E ++ +
Sbjct: 383 L-LFDYILVKQINLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGSITS 441
Query: 492 TLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSP 551
L S SV+ G G G+ + G+T ++ NL I++ +L++L+PL I +P P
Sbjct: 442 FLASTLCLSSVVSGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVPMLEP 501
Query: 552 DSTSKESEDIEMKS 565
+ + KS
Sbjct: 502 GFEREGKRAMSKKS 515
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | ||||||
| 224108011 | 559 | predicted protein [Populus trichocarpa] | 0.969 | 0.982 | 0.789 | 0.0 | |
| 297822959 | 558 | integral membrane transporter family pro | 0.968 | 0.982 | 0.732 | 0.0 | |
| 18402856 | 560 | major facilitator protein [Arabidopsis t | 0.971 | 0.982 | 0.734 | 0.0 | |
| 255552145 | 496 | transporter, putative [Ricinus communis] | 0.867 | 0.989 | 0.816 | 0.0 | |
| 225432704 | 482 | PREDICTED: uncharacterized protein LOC10 | 0.840 | 0.987 | 0.851 | 0.0 | |
| 297737073 | 538 | unnamed protein product [Vitis vinifera] | 0.941 | 0.990 | 0.753 | 0.0 | |
| 449433309 | 546 | PREDICTED: folate-biopterin transporter | 0.906 | 0.939 | 0.730 | 0.0 | |
| 356535999 | 554 | PREDICTED: uncharacterized protein LOC10 | 0.842 | 0.861 | 0.805 | 0.0 | |
| 356574412 | 505 | PREDICTED: uncharacterized protein LOC10 | 0.839 | 0.940 | 0.810 | 0.0 | |
| 115470803 | 490 | Os07g0172900 [Oryza sativa Japonica Grou | 0.832 | 0.961 | 0.757 | 0.0 |
| >gi|224108011|ref|XP_002314687.1| predicted protein [Populus trichocarpa] gi|222863727|gb|EEF00858.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/555 (78%), Positives = 483/555 (87%), Gaps = 6/555 (1%)
Query: 15 STISILP-LQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRR--KPFKKKDMSVAVPI 71
S+ SILP QN I S +LS H +IHR+ L++++ R R K KDMSVA+ +
Sbjct: 8 SSFSILPSHQNPILSSLTLSP--HFQIHRKRLSIVSHRRTRRRPRRKLAGGKDMSVAINM 65
Query: 72 TAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDL 131
PS RRDKS+ S+LD + AG+ +MLT D EGEMS+ SK++ S+YL + FGVDL
Sbjct: 66 PTPSHRRDKSQDSVLDSTNSAGEREMLTADVEGEMSSTSKNAMRISKYLISRI-CFGVDL 124
Query: 132 SPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
SPDN AVAMVYFVQGVLGLARLAV+FYLKDDLHL+PAETAVISGFS+LPWLIKPLYGFIS
Sbjct: 125 SPDNIAVAMVYFVQGVLGLARLAVSFYLKDDLHLEPAETAVISGFSALPWLIKPLYGFIS 184
Query: 192 DSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMV 251
DS+PLFGYRRRSYLVLSGLLGALSWSLM+T V+SKYSAA ILLGSLSVAFSDVVVDSMV
Sbjct: 185 DSVPLFGYRRRSYLVLSGLLGALSWSLMSTFVDSKYSAAFCILLGSLSVAFSDVVVDSMV 244
Query: 252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311
VERARGESQS+SGSLQSLCWGSSAFGGIVSSYFSGS+VDAYGVRFVFGVTALLPLITS V
Sbjct: 245 VERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVDAYGVRFVFGVTALLPLITSAV 304
Query: 312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371
AVLV+EQ+VLGP+ +L L F ESSKQ++ QLW+AVKQPNVFLPTLF+FLWQATP
Sbjct: 305 AVLVREQRVLGPASGPSLALPGSGFLESSKQHIVQLWDAVKQPNVFLPTLFIFLWQATPQ 364
Query: 372 SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA 431
SDSAMF+FTTN+LGFTPEFLGRVK VTSVASLLGVGLYNGFLKNVPLRKIF+A T+ GTA
Sbjct: 365 SDSAMFFFTTNKLGFTPEFLGRVKLVTSVASLLGVGLYNGFLKNVPLRKIFVATTVTGTA 424
Query: 432 LGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFA 491
LGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVL Q SFMPVLVLAA+LCPEGMEATLFA
Sbjct: 425 LGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLGQVSFMPVLVLAAKLCPEGMEATLFA 484
Query: 492 TLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSP 551
TLMSISNGGSVLGGL+GAGLTQ FGVTKD+FDNLA LIILCNLSSLLPLPL+GLLP D P
Sbjct: 485 TLMSISNGGSVLGGLIGAGLTQFFGVTKDNFDNLAFLIILCNLSSLLPLPLLGLLPNDRP 544
Query: 552 DSTSKESEDIEMKSN 566
D+ KES DIEMKSN
Sbjct: 545 DAIPKESRDIEMKSN 559
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822959|ref|XP_002879362.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297325201|gb|EFH55621.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/568 (73%), Positives = 470/568 (82%), Gaps = 20/568 (3%)
Query: 9 MSSLTFSTISILPLQNEIFSLTSLSS-----PLHSRIHRRPLTLIAGARRSYRRKPFKKK 63
M+SL +ISI P ++I L S+++ + +R HR P RR R++P +
Sbjct: 1 MASLNLFSISISP--SQITLLPSINNGTRRLAIAARSHRVP-------RRKIRKRP-PDR 50
Query: 64 DMSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSS--PHESRYLS 121
DMS V I RRD E LLD +GD + E + T S + P + R LS
Sbjct: 51 DMSSIVSIPELPRRRDSEESLLLDSRISVAEGDTSNTNVEEDRDTSSIRTQPPRKERNLS 110
Query: 122 -NGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLP 180
+KF+GV+LSPDN AVAMVYFVQGVLGLARLAV+FYLKDDL LDPAETAVI+G SSLP
Sbjct: 111 ITRSKFYGVELSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLRLDPAETAVITGLSSLP 170
Query: 181 WLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSV 240
WL+KPLYGFISDS+PLFGYRRRSYLVLSGLLGA SWSLMA V+SKYSAA ILLGSLSV
Sbjct: 171 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAAFVDSKYSAAFCILLGSLSV 230
Query: 241 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGV 300
AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS+V++YGVRFVFGV
Sbjct: 231 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGV 290
Query: 301 TALLPLITSGVAVLVKEQQVLGPS--RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358
TALLPLITS VAVLV EQ+V+ P+ +++N+PL P F ++SKQNM QLW A+KQPNVFL
Sbjct: 291 TALLPLITSAVAVLVNEQRVVRPASGQKENIPLVSPGFLQTSKQNMIQLWSAIKQPNVFL 350
Query: 359 PTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418
PTLF+FLWQATPHSDSAMFYFTTN+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPL
Sbjct: 351 PTLFIFLWQATPHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPL 410
Query: 419 RKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAA 478
RKIFL TIFGT LGMTQV LV+G NR+ GISDEWFAIGDSLILTVL+QASFMPVLVLAA
Sbjct: 411 RKIFLVTTIFGTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAA 470
Query: 479 RLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLL 538
RLCPEGMEATLFATLMSISNGGSVLGGL+GAGLTQ+FG+TKDSF NL+TLIILCNLSSLL
Sbjct: 471 RLCPEGMEATLFATLMSISNGGSVLGGLMGAGLTQVFGITKDSFGNLSTLIILCNLSSLL 530
Query: 539 PLPLIGLLPQDSPDSTSKESEDIEMKSN 566
PLPL+GLLP+DSPD+ +K+ D+EMKSN
Sbjct: 531 PLPLLGLLPRDSPDTLAKDDADVEMKSN 558
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18402856|ref|NP_565734.1| major facilitator protein [Arabidopsis thaliana] gi|75206588|sp|Q9SKZ5.2|FBT1_ARATH RecName: Full=Folate-biopterin transporter 1, chloroplastic; Flags: Precursor gi|19698919|gb|AAL91195.1| unknown protein [Arabidopsis thaliana] gi|20197619|gb|AAD15400.2| expressed protein [Arabidopsis thaliana] gi|21553656|gb|AAM62749.1| unknown [Arabidopsis thaliana] gi|28059039|gb|AAO29981.1| unknown protein [Arabidopsis thaliana] gi|330253531|gb|AEC08625.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/568 (73%), Positives = 469/568 (82%), Gaps = 18/568 (3%)
Query: 9 MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKK---KDM 65
M+S + +ISI P Q + L S+++ RR L + A + R RRK K+ +DM
Sbjct: 1 MASRSLFSISISPSQFTV--LPSINN------ERRRLAIAARSHRLSRRKIRKRPPDRDM 52
Query: 66 SVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPS----KSSPHESRYLS 121
S V I RRD E LLD +GD D EG+ T S + P + R LS
Sbjct: 53 SSIVSIPELPRRRDSEESLLLDSRISVAEGDTSNTDVEGDRDTTSSIRTQPPPRKGRNLS 112
Query: 122 NGA-KFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLP 180
+ KF+GV+LSPDN AVAMVYFVQGVLGLARLAV+FYLKDDLHLDPAETAVI+G SSLP
Sbjct: 113 SSRIKFYGVELSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLP 172
Query: 181 WLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSV 240
WL+KPLYGFISDS+PLFGYRRRSYLVLSGLLGA SWSLMA V+SKYSAA ILLGSLSV
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSV 232
Query: 241 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGV 300
AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS+V++YGVRFVFGV
Sbjct: 233 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGV 292
Query: 301 TALLPLITSGVAVLVKEQQVLGPS--RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358
TALLPLITS VAVLV EQ+V+ P+ +++N+ L P F ++SKQNM QLW A+KQPNVFL
Sbjct: 293 TALLPLITSAVAVLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFL 352
Query: 359 PTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418
PTLF+FLWQATPHSDSAMFYFTTN+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPL
Sbjct: 353 PTLFIFLWQATPHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPL 412
Query: 419 RKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAA 478
RKIFL TIFGT LGMTQV LV+G NR+ GISDEWFAIGDSLILTVL+QASFMPVLVLAA
Sbjct: 413 RKIFLVTTIFGTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAA 472
Query: 479 RLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLL 538
RLCPEGMEATLFATLMSISNGGSVLGGL+GAGLTQ FG+T+DSF NL+TLIILCNLSSLL
Sbjct: 473 RLCPEGMEATLFATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILCNLSSLL 532
Query: 539 PLPLIGLLPQDSPDSTSKESEDIEMKSN 566
PLPL+GLLP+DSPD+ +K+ D+EMKSN
Sbjct: 533 PLPLLGLLPRDSPDTLTKDDADVEMKSN 560
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552145|ref|XP_002517117.1| transporter, putative [Ricinus communis] gi|223543752|gb|EEF45280.1| transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/495 (81%), Positives = 445/495 (89%), Gaps = 4/495 (0%)
Query: 74 PSLRRDKS-EKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGA-KFFGVDL 131
PS RR++S E SLL E+ GKG+M+ R E S S ++R +S+G K FGV+L
Sbjct: 4 PSHRRERSDETSLLISENSTGKGEMVARSEVEE--EGSYSGVRKNRKMSSGRLKCFGVEL 61
Query: 132 SPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
SPDN AVAMVYFVQGVLGL+RLAV+FYLKDDLHLDPAETAVISGFS+LPWL+KPLYGFIS
Sbjct: 62 SPDNVAVAMVYFVQGVLGLSRLAVSFYLKDDLHLDPAETAVISGFSALPWLVKPLYGFIS 121
Query: 192 DSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMV 251
DS+PLFGYRRRSYLVLSGLLGALSWSLMA V+SKY AA ILLGSLSVAFSDVVVDSMV
Sbjct: 122 DSVPLFGYRRRSYLVLSGLLGALSWSLMAIFVDSKYGAAFCILLGSLSVAFSDVVVDSMV 181
Query: 252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311
VERARGESQS+SGSLQSLCWGSSAFGGIVSSYFSGS+V AYGVRFVFGVTALLPL+TSGV
Sbjct: 182 VERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVGAYGVRFVFGVTALLPLLTSGV 241
Query: 312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371
AVLVKEQ++LGP R QNL LG F ESSKQ++ QLW+AVKQPNVFLPTLF+FLWQATPH
Sbjct: 242 AVLVKEQRILGPIRGQNLTLGGNGFLESSKQHIIQLWDAVKQPNVFLPTLFIFLWQATPH 301
Query: 372 SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA 431
SDSAMFYFTTN+LGFTPEFLGRVK VTS+ASL GVGLYNGFLKNVPLRKIF+ TI GTA
Sbjct: 302 SDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLAGVGLYNGFLKNVPLRKIFVFTTISGTA 361
Query: 432 LGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFA 491
LGMTQVFLVTGLNR+FGISDEWFAIGDSLILTVL+QASFMPVLVLAA+LCPEGMEATLFA
Sbjct: 362 LGMTQVFLVTGLNRQFGISDEWFAIGDSLILTVLAQASFMPVLVLAAKLCPEGMEATLFA 421
Query: 492 TLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSP 551
TLMSISNGGSVLGGL+GAGLTQ+FG+TKDSF NLA+LIILCNLSSLLPLPL+GLLP D+
Sbjct: 422 TLMSISNGGSVLGGLIGAGLTQVFGITKDSFGNLASLIILCNLSSLLPLPLLGLLPPDTS 481
Query: 552 DSTSKESEDIEMKSN 566
D+ ++E DIEMKS+
Sbjct: 482 DTIAEEGGDIEMKSS 496
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432704|ref|XP_002278798.1| PREDICTED: uncharacterized protein LOC100254579 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/477 (85%), Positives = 438/477 (91%), Gaps = 1/477 (0%)
Query: 91 GAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGL 150
GAGKGDMLT + EGE + S+ +P ++RYL + K FGVDLSPDN AVAMVYFVQGVLGL
Sbjct: 6 GAGKGDMLTTNMEGETCSHSQVAPRKNRYLMSNVKCFGVDLSPDNVAVAMVYFVQGVLGL 65
Query: 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGL 210
+RLAV+FYLKDDLHLDPAETAVISGFS+LPWL+KPLYGFISDSLPLFGYRRRSYLVLSGL
Sbjct: 66 SRLAVSFYLKDDLHLDPAETAVISGFSALPWLVKPLYGFISDSLPLFGYRRRSYLVLSGL 125
Query: 211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC 270
LGALSWSLMAT V+SKY AA ILLGSLSVAFSDVVVDSMVVERARGESQS+SGSLQSLC
Sbjct: 126 LGALSWSLMATFVDSKYGAAFCILLGSLSVAFSDVVVDSMVVERARGESQSMSGSLQSLC 185
Query: 271 WGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLP 330
WGSSAFGGIVSSYFSGS+V AYGVRFVFGVTALLPLITS VA+LVKEQ V GP+R Q P
Sbjct: 186 WGSSAFGGIVSSYFSGSLVGAYGVRFVFGVTALLPLITSAVAILVKEQPVAGPARGQAFP 245
Query: 331 LGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEF 390
L PSF+ESSKQN+ QLW+AV+Q N+FLPTLF+FLWQATPHSDSAMFYFTTN LGFTPEF
Sbjct: 246 LISPSFYESSKQNIIQLWDAVRQRNIFLPTLFIFLWQATPHSDSAMFYFTTNRLGFTPEF 305
Query: 391 LGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGIS 450
LGRVK VTSVASL+GVGLYNGFLK+VPLRKIF TIFG+ALGMTQVFLVTGLNRKFGIS
Sbjct: 306 LGRVKLVTSVASLIGVGLYNGFLKDVPLRKIFFVTTIFGSALGMTQVFLVTGLNRKFGIS 365
Query: 451 DEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAG 510
DEWF+IGDSLILTVL QASFMPVLVLAARLCP+GMEATLFATLMSISNGGSV+GGL+GAG
Sbjct: 366 DEWFSIGDSLILTVLGQASFMPVLVLAARLCPQGMEATLFATLMSISNGGSVVGGLVGAG 425
Query: 511 LTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTS-KESEDIEMKSN 566
LTQLFGVTKDSFDNL LIILCNLSSLLPLPL+GLLPQD+PD S KE+EDIEMK N
Sbjct: 426 LTQLFGVTKDSFDNLTFLIILCNLSSLLPLPLLGLLPQDNPDDASTKETEDIEMKCN 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737073|emb|CBI26274.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/563 (75%), Positives = 473/563 (84%), Gaps = 30/563 (5%)
Query: 9 MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAG----ARRSYRRKPFKKKD 64
M+ LT + +S+LP QN F SP+ S+IHR+P T +AG R RRKP +K
Sbjct: 1 MAPLTSTPVSLLPFQNP-FLPLLSLSPILSQIHRKPATFLAGIHGITHRKTRRKP-PEKS 58
Query: 65 MSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGA 124
MSV+V + PS RRD+ + + +D + AGKGDMLT + EGE + S+ +P ++RYL +
Sbjct: 59 MSVSVQMPTPSHRRDRDDDTDVDSRNCAGKGDMLTTNMEGETCSHSQVAPRKNRYLMSNV 118
Query: 125 KFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIK 184
K FGVDLSPDN AVAMVYFVQGVLGL+RLAV+FYLKDDLHLDPAETAVISGFS+LPWL+K
Sbjct: 119 KCFGVDLSPDNVAVAMVYFVQGVLGLSRLAVSFYLKDDLHLDPAETAVISGFSALPWLVK 178
Query: 185 PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSD 244
PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMAT V+SKY AA ILLGSLSVAFSD
Sbjct: 179 PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATFVDSKYGAAFCILLGSLSVAFSD 238
Query: 245 VVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALL 304
VVVDSMVVERARGESQS+SGSLQSLCWGSSAFGGIVSSYFSGS+V AYGVRFVFGVTALL
Sbjct: 239 VVVDSMVVERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVGAYGVRFVFGVTALL 298
Query: 305 PLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF 364
PLITS VA+LVKEQ N+ QLW+AV+Q N+FLPTLF+F
Sbjct: 299 PLITSAVAILVKEQ-----------------------PNIIQLWDAVRQRNIFLPTLFIF 335
Query: 365 LWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLA 424
LWQATPHSDSAMFYFTTN LGFTPEFLGRVK VTSVASL+GVGLYNGFLK+VPLRKIF
Sbjct: 336 LWQATPHSDSAMFYFTTNRLGFTPEFLGRVKLVTSVASLIGVGLYNGFLKDVPLRKIFFV 395
Query: 425 NTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEG 484
TIFG+ALGMTQVFLVTGLNRKFGISDEWF+IGDSLILTVL QASFMPVLVLAARLCP+G
Sbjct: 396 TTIFGSALGMTQVFLVTGLNRKFGISDEWFSIGDSLILTVLGQASFMPVLVLAARLCPQG 455
Query: 485 MEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIG 544
MEATLFATLMSISNGGSV+GGL+GAGLTQLFGVTKDSFDNL LIILCNLSSLLPLPL+G
Sbjct: 456 MEATLFATLMSISNGGSVVGGLVGAGLTQLFGVTKDSFDNLTFLIILCNLSSLLPLPLLG 515
Query: 545 LLPQDSP-DSTSKESEDIEMKSN 566
LLPQD+P D+++KE+EDIEMK N
Sbjct: 516 LLPQDNPDDASTKETEDIEMKCN 538
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433309|ref|XP_004134440.1| PREDICTED: folate-biopterin transporter 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/545 (73%), Positives = 450/545 (82%), Gaps = 32/545 (5%)
Query: 32 LSSPLHSRIHRRPLTLIAGA-RRSYRRKPFK--------KKDMSVAVPITAPSLRRDKSE 82
LS P S+I R+ +GA +RS + P K DMSVAVP+ SL +S
Sbjct: 24 LSFPPSSKIRRKLPPPGSGAFKRSPQSSPLTPSPCRDPPKDDMSVAVPMDDESLPNSRS- 82
Query: 83 KSLLDYESGAGKGDMLTRDTEGEMSTPS-KSSPHESRYLSNGAKFFGVDLSPDNFAVAMV 141
+ D EG +S+ S K++ H+ +Y ++ K FGVDLSPDN AVAMV
Sbjct: 83 ----------------SNDMEGMVSSNSDKTTVHKKKYYTSTIKIFGVDLSPDNVAVAMV 126
Query: 142 YFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRR 201
YFVQGVLGLARLAV+FYLKDDLHLDPAETAV+SGFS+ PWL+KPLYGFISDS+PLFGYRR
Sbjct: 127 YFVQGVLGLARLAVSFYLKDDLHLDPAETAVVSGFSAFPWLVKPLYGFISDSVPLFGYRR 186
Query: 202 RSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQS 261
RSYL+LSGLLGALSW+LMAT+V+SKY AA ILLGSLSVAFSDVVVDSMVVERARGESQS
Sbjct: 187 RSYLILSGLLGALSWTLMATLVDSKYGAAFCILLGSLSVAFSDVVVDSMVVERARGESQS 246
Query: 262 VSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVL 321
+SGSLQSLCWGSSAFGGIVSSYFSGS+VDAYGVRFVFGVTALLPLITS VAVLVKEQ
Sbjct: 247 MSGSLQSLCWGSSAFGGIVSSYFSGSLVDAYGVRFVFGVTALLPLITSVVAVLVKEQ--- 303
Query: 322 GPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTT 381
P R N P + F SS+Q++ +LW AV Q NV LPTLF+FLWQATP SDSAMF+FTT
Sbjct: 304 -PVRGINRPSANYDFVRSSRQHVVELWGAVSQRNVLLPTLFIFLWQATPQSDSAMFFFTT 362
Query: 382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVT 441
N+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPLRKIFL TIFG ALGM+QV LVT
Sbjct: 363 NKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKKVPLRKIFLVTTIFGCALGMSQVLLVT 422
Query: 442 GLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGS 501
GLNR++GISDEWFAIGDSLI+TVL QASFMPVLVLAA+LCPEGMEATLFATLMSISNGGS
Sbjct: 423 GLNREWGISDEWFAIGDSLIITVLGQASFMPVLVLAAKLCPEGMEATLFATLMSISNGGS 482
Query: 502 VLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKESEDI 561
VLGGL+GAGLTQ+FGVTKDSF+NL+TLIILCNLSSLLPLPL+ LLPQ++PDS S ++ D+
Sbjct: 483 VLGGLIGAGLTQMFGVTKDSFENLSTLIILCNLSSLLPLPLLRLLPQETPDSNS-DTIDV 541
Query: 562 EMKSN 566
E+KSN
Sbjct: 542 ELKSN 546
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535999|ref|XP_003536528.1| PREDICTED: uncharacterized protein LOC100777034 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/477 (80%), Positives = 426/477 (89%)
Query: 90 SGAGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLG 149
+G GD LT +T+ E+S+ S+ + +++Y ++ K FGV+LSPDN AVAMVYFVQGVLG
Sbjct: 78 AGTDDGDALTTETDPEVSSSSRIAARKNKYRTSSIKLFGVELSPDNVAVAMVYFVQGVLG 137
Query: 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSG 209
LARLAVNFYLKDDLHLDPAE AV+SGFS+LPWL+KPLYGFISDS+PLFGYRRRSYLVLSG
Sbjct: 138 LARLAVNFYLKDDLHLDPAEAAVLSGFSALPWLVKPLYGFISDSVPLFGYRRRSYLVLSG 197
Query: 210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSL 269
LLGALSWSLMAT V++KYSA ILLGSLSVAFSDVVVDSMVVERARGESQS SGSLQSL
Sbjct: 198 LLGALSWSLMATFVDNKYSAGFCILLGSLSVAFSDVVVDSMVVERARGESQSTSGSLQSL 257
Query: 270 CWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNL 329
CWGSSAFGGIVSSYFSGS++DAYGVRFVFGVT+LLPLITS VAVLVKEQ ++G +R NL
Sbjct: 258 CWGSSAFGGIVSSYFSGSLLDAYGVRFVFGVTSLLPLITSVVAVLVKEQPMIGTARGLNL 317
Query: 330 PLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPE 389
P F ESSKQ + QLW +V+Q +VFLPTLF+FLWQATP SDSAMFYFTTN LGFTPE
Sbjct: 318 LFSGPEFLESSKQRIIQLWGSVRQRSVFLPTLFIFLWQATPQSDSAMFYFTTNSLGFTPE 377
Query: 390 FLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGI 449
FLGRVK VTS+ASLLGVGLYNGFLKNVPLRK+F A T+ G+ LGMTQVFLVTGLNRKFGI
Sbjct: 378 FLGRVKLVTSIASLLGVGLYNGFLKNVPLRKVFFATTLLGSTLGMTQVFLVTGLNRKFGI 437
Query: 450 SDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGA 509
SDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMS+SNGGSV+GGLLGA
Sbjct: 438 SDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSVSNGGSVVGGLLGA 497
Query: 510 GLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKESEDIEMKSN 566
GLTQLFG+TKD FDNLA LIILCNLSSLLPLPL+GLLP D+PD +++ DIEMK N
Sbjct: 498 GLTQLFGITKDRFDNLAALIILCNLSSLLPLPLLGLLPGDNPDMNEEDNSDIEMKCN 554
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574412|ref|XP_003555342.1| PREDICTED: uncharacterized protein LOC100802771 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/475 (81%), Positives = 420/475 (88%)
Query: 92 AGKGDMLTRDTEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLA 151
AGK D LT DT+ E S+ + + + +Y + K FGV+LSPDN AVAMVYFVQGVLGLA
Sbjct: 31 AGKDDALTADTDLEASSSGRIASRKQKYWVSSIKLFGVELSPDNVAVAMVYFVQGVLGLA 90
Query: 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLL 211
RLAVNFYLKDDLHLDPAE AVISGFS+LPWL+KPLYGFISDS+PLFGYRRRSYLVLSGLL
Sbjct: 91 RLAVNFYLKDDLHLDPAEAAVISGFSALPWLVKPLYGFISDSVPLFGYRRRSYLVLSGLL 150
Query: 212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCW 271
GALSWSLMAT V++KYSA ILLGSLSVAFSDVVVDSMVVERARGESQS SGSLQSLCW
Sbjct: 151 GALSWSLMATFVDNKYSAGFCILLGSLSVAFSDVVVDSMVVERARGESQSTSGSLQSLCW 210
Query: 272 GSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPL 331
GSSAFGGIVSSYFSGS++DAYGVRFVFGVT+LLPLITS VAVLVKEQ + G +R N+
Sbjct: 211 GSSAFGGIVSSYFSGSLLDAYGVRFVFGVTSLLPLITSVVAVLVKEQPMFGTTRGLNILF 270
Query: 332 GDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFL 391
P F ESSKQ + QLW +V+Q +VFLPTLF+FLWQATP SDSAMFYFTTN LGFTPEFL
Sbjct: 271 AGPEFLESSKQRIIQLWGSVRQRSVFLPTLFIFLWQATPQSDSAMFYFTTNSLGFTPEFL 330
Query: 392 GRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451
GRVK VTS+ASLLGVGLYNGFLKNVPLRKIF A T+ G+ LGMTQVFLVTGLNRKFGISD
Sbjct: 331 GRVKLVTSIASLLGVGLYNGFLKNVPLRKIFFATTLLGSTLGMTQVFLVTGLNRKFGISD 390
Query: 452 EWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGL 511
EWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMS+SNGGSV+GGLLGAGL
Sbjct: 391 EWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSVSNGGSVVGGLLGAGL 450
Query: 512 TQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKESEDIEMKSN 566
TQLFG+TKD FDNLA LIILCNLSSLLPLPL+GLLP +PD +++ DIEMK N
Sbjct: 451 TQLFGITKDRFDNLAALIILCNLSSLLPLPLLGLLPGGNPDVNEEDNSDIEMKCN 505
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115470803|ref|NP_001059000.1| Os07g0172900 [Oryza sativa Japonica Group] gi|34394451|dbj|BAC83625.1| putative integral membrane protein [Oryza sativa Japonica Group] gi|113610536|dbj|BAF20914.1| Os07g0172900 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/474 (75%), Positives = 404/474 (85%), Gaps = 3/474 (0%)
Query: 88 YESGAGKGDMLTRD-TEGEMSTPSKSSPHESRYLSNGAKFFGVDLSPDNFAVAMVYFVQG 146
Y+ G+ K D R E + P+ +S+ S GV+LSPDN AVA VYFVQG
Sbjct: 18 YQVGSSKVDTSERYFDEWQKKLPNTDEIRKSKPRSRYFTISGVELSPDNMAVATVYFVQG 77
Query: 147 VLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLV 206
VLGLARLAV+FYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS+PLFGYRRRSYL+
Sbjct: 78 VLGLARLAVSFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSIPLFGYRRRSYLI 137
Query: 207 LSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSL 266
LSG LGALSW LMAT+V+SKYSAA SILLGSLSVAFSDVVVDSMVVERARGESQS SGSL
Sbjct: 138 LSGFLGALSWGLMATLVDSKYSAAFSILLGSLSVAFSDVVVDSMVVERARGESQSTSGSL 197
Query: 267 QSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRR 326
QSLCWGSSAFGGIVS+YFSGS+VD YGVRFVFGVTA LPL+TS VAVLV E ++ S
Sbjct: 198 QSLCWGSSAFGGIVSAYFSGSLVDTYGVRFVFGVTAFLPLMTSAVAVLVNEHRL--SSGE 255
Query: 327 QNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGF 386
+ + F E+SKQ++ QLW +VKQPN+FLPTLF+FLWQATP SDSAMF+F TN+LGF
Sbjct: 256 RAMSHSGSGFIETSKQHIRQLWTSVKQPNIFLPTLFIFLWQATPKSDSAMFFFITNKLGF 315
Query: 387 TPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRK 446
TPEFLGRVK VTS+ASLLGVGLYN FLK VPLRKIFLA TI G+ALGMTQV LVTGLNR+
Sbjct: 316 TPEFLGRVKLVTSIASLLGVGLYNYFLKAVPLRKIFLATTIIGSALGMTQVLLVTGLNRQ 375
Query: 447 FGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGL 506
FGISDEWF+IGDSLI+TVLSQASFMPVLVLAA+LCP GMEATLFATLMSISN GSV GGL
Sbjct: 376 FGISDEWFSIGDSLIITVLSQASFMPVLVLAAKLCPPGMEATLFATLMSISNAGSVSGGL 435
Query: 507 LGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKESED 560
+GAGLTQ FGVTKDSF NLA LI++CNLS+LLPLPL+GLLP++S ++ +E++
Sbjct: 436 VGAGLTQFFGVTKDSFKNLALLIVICNLSALLPLPLLGLLPEESGNADDEETKH 489
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | ||||||
| TAIR|locus:2045462 | 560 | AT2G32040 "AT2G32040" [Arabido | 0.971 | 0.982 | 0.625 | 3e-172 | |
| UNIPROTKB|Q55721 | 494 | slr0642 "Folate-biopterin tran | 0.669 | 0.767 | 0.474 | 1e-91 | |
| GENEDB_PFALCIPARUM|PF11_0172 | 455 | PF11_0172 "folate/biopterin tr | 0.660 | 0.821 | 0.273 | 2.2e-43 | |
| UNIPROTKB|Q8IIK1 | 455 | PF11_0172 "Folate/biopterin tr | 0.660 | 0.821 | 0.273 | 2.2e-43 | |
| TAIR|locus:2017814 | 497 | AT1G79710 "AT1G79710" [Arabido | 0.673 | 0.766 | 0.284 | 3.2e-42 | |
| TAIR|locus:2179285 | 499 | AT5G25050 "AT5G25050" [Arabido | 0.673 | 0.763 | 0.287 | 1.1e-41 | |
| TAIR|locus:2160150 | 491 | AT5G54860 "AT5G54860" [Arabido | 0.353 | 0.407 | 0.316 | 1.2e-40 | |
| GENEDB_PFALCIPARUM|MAL8P1.13 | 505 | MAL8P1.13 "integral membrane p | 0.653 | 0.732 | 0.250 | 2.4e-35 | |
| UNIPROTKB|Q8IBB7 | 505 | MAL8P1.13 "Folate/biopterin tr | 0.653 | 0.732 | 0.250 | 2.4e-35 | |
| TAIR|locus:2010911 | 442 | AT1G64890 "AT1G64890" [Arabido | 0.676 | 0.866 | 0.252 | 4e-30 |
| TAIR|locus:2045462 AT2G32040 "AT2G32040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1674 (594.3 bits), Expect = 3.0e-172, P = 3.0e-172
Identities = 355/568 (62%), Positives = 405/568 (71%)
Query: 9 MSSLTFSTISILPLQNEIFSLTSLSSPLHSRIHRRPLTLIAGARRSYRRKPFKK---KDM 65
M+S + +ISI P Q + L S+++ RR L + A + R RRK K+ +DM
Sbjct: 1 MASRSLFSISISPSQFTV--LPSINN------ERRRLAIAARSHRLSRRKIRKRPPDRDM 52
Query: 66 SVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPS----KSSPHESRYLS 121
S V I RRD E LLD +GD D EG+ T S + P + R LS
Sbjct: 53 SSIVSIPELPRRRDSEESLLLDSRISVAEGDTSNTDVEGDRDTTSSIRTQPPPRKGRNLS 112
Query: 122 NGA-KFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLP 180
+ KF+GV+LSPDN AVAMVYFVQGVLGLARLAV+FYLKDDLHLDPAETAVI+G SSLP
Sbjct: 113 SSRIKFYGVELSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLP 172
Query: 181 WLIKPLYGFISDSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXXX 240
WL+KPLYGFISDS+PLFGYRRR MA V+SKY
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSV 232
Query: 241 XFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGV 300
FSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS+V++YGVRFVFGV
Sbjct: 233 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGV 292
Query: 301 TALLPLITSGVAVLVKEQQVLGPS--RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358
TALLPLITS VAVLV EQ+V+ P+ +++N+ L P F ++SKQNM QLW A+KQPNVFL
Sbjct: 293 TALLPLITSAVAVLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFL 352
Query: 359 PTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418
PTLF+FLWQATPHSDSAMFYFTTN+LGFTPEFLGRVK VTS+ASLLGVGLYNGFLK VPL
Sbjct: 353 PTLFIFLWQATPHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPL 412
Query: 419 RKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAA 478
RKIFL TIFGT LGMTQV LV+G NR+ GISDEWFAIGDSLILTVL+QASFMPVLVLAA
Sbjct: 413 RKIFLVTTIFGTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAA 472
Query: 479 RLCPEGMEATLFATLMSISNXXXXXXXXXXXXXXXXXXVTKDSFDNLATXXXXXXXXXXX 538
RLCPEGMEATLFATLMSISN +T+DSF NL+T
Sbjct: 473 RLCPEGMEATLFATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILCNLSSLL 532
Query: 539 XXXXXXXXXQDSPDSTSKESEDIEMKSN 566
+DSPD+ +K+ D+EMKSN
Sbjct: 533 PLPLLGLLPRDSPDTLTKDDADVEMKSN 560
|
|
| UNIPROTKB|Q55721 slr0642 "Folate-biopterin transporter" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 185/390 (47%), Positives = 245/390 (62%)
Query: 137 AVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPL 196
A+ +YFVQGVLGL+RLAV+F+LKD+L L PA + G + PW++KP+ G +SD++PL
Sbjct: 38 AILSIYFVQGVLGLSRLAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSDTVPL 97
Query: 197 FGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXXXXFSDVVVDSMVVERAR 256
FGYRRR A V S DV+VDS+VVERA+
Sbjct: 98 FGYRRRSYLWLSGLMGSAGWLLFAAWVSSGTQAGLVLLFTSLSVAIGDVIVDSLVVERAQ 157
Query: 257 GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVK 316
ES + GSLQSL WG++A GGI+++Y SG++++ + R VF +TA+ PL+T G A L+
Sbjct: 158 RESLAQVGSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTVGAAFLIS 217
Query: 317 EQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM 376
E + + + P P K + +W+AV+Q + LPTLF+F WQATP ++SA
Sbjct: 218 E---VSTAEEEEKP--QP------KAQIKLVWQAVRQKTILLPTLFIFFWQATPSAESAF 266
Query: 377 FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ 436
FYFTTNELGF P+FLGRV+ VTSVA L+GVGLY FLK +P R I +T+ + LG+T
Sbjct: 267 FYFTTNELGFEPKFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGLTT 326
Query: 437 VFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSI 496
+ L+T NR GI D WF++GDS+ILTV Q +FMPVLVLAARLCP G+EATLFA LMS+
Sbjct: 327 LILITHANRAMGIDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATLFALLMSV 386
Query: 497 SNXXXXXXXXXXXXXXXXXXVTKDSFDNLA 526
N VT+ FDNLA
Sbjct: 387 MNLAGVLSFEVGSLLTHWLGVTETQFDNLA 416
|
|
| GENEDB_PFALCIPARUM|PF11_0172 PF11_0172 "folate/biopterin transporter, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 109/399 (27%), Positives = 196/399 (49%)
Query: 135 NFAVAMVYFV---QGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
+F +VY V G+ LA LA+ + KD L P + ++I + +P+++KP+ I+
Sbjct: 38 DFTQIVVYLVGLSDGLTHLASLAIYYLFKDYFRLTPYQVSLILMYPYIPFILKPVIALIT 97
Query: 192 DSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXXXXFSDVVVDSMV 251
DS +FG RR+ +A + S F V +++V
Sbjct: 98 DSFSIFGMRRKPYLFLFSLFQSLNFLALAFLNLSVIQASLILFFISLCASFCTTVAEALV 157
Query: 252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311
VE + G++ S + + S A G + +YFSG ++ ++F T++ PLI S
Sbjct: 158 VESSMGQTYSQGTNKVTEFIASKAIGSLSVAYFSGYFLEKMPREYIFIATSIFPLIISLS 217
Query: 312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMF-QLWEAVKQPN--VFL-PTLFVFLWQ 367
+ +KE++ S+ +N+F QL + +K N +FL P L++F++
Sbjct: 218 CLFLKEKEY------------------STNRNIFNQLSDLIKFINTPIFLGPFLYIFVYM 259
Query: 368 ATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTI 427
+ P D A F+F TN+LGF P F+G ++ +ASL+G+ +Y FLKN LRK + T+
Sbjct: 260 SGPDYDDAFFFFCTNKLGFRPSFMGTLRLTYGIASLIGIIIYRVFLKNCSLRKTLIITTL 319
Query: 428 FGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEA 487
+ ++ + L +N+ GIS+E F + ++ +++ +P+ +L A +C G+EA
Sbjct: 320 VSFPIYISPIILTEHINKFLGISNELFVLSGGFLIEAITEIQLLPLFILTANICQPGLEA 379
Query: 488 TLFATLMSISNXXXXXXXXXXXXXXXXXXVTKDSFDNLA 526
++FAT++S+ N + +FDNL+
Sbjct: 380 SVFATILSVKNLGSLTKKGTSSFITYLMKIDSYNFDNLS 418
|
|
| UNIPROTKB|Q8IIK1 PF11_0172 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 109/399 (27%), Positives = 196/399 (49%)
Query: 135 NFAVAMVYFV---QGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
+F +VY V G+ LA LA+ + KD L P + ++I + +P+++KP+ I+
Sbjct: 38 DFTQIVVYLVGLSDGLTHLASLAIYYLFKDYFRLTPYQVSLILMYPYIPFILKPVIALIT 97
Query: 192 DSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXXXXFSDVVVDSMV 251
DS +FG RR+ +A + S F V +++V
Sbjct: 98 DSFSIFGMRRKPYLFLFSLFQSLNFLALAFLNLSVIQASLILFFISLCASFCTTVAEALV 157
Query: 252 VERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311
VE + G++ S + + S A G + +YFSG ++ ++F T++ PLI S
Sbjct: 158 VESSMGQTYSQGTNKVTEFIASKAIGSLSVAYFSGYFLEKMPREYIFIATSIFPLIISLS 217
Query: 312 AVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMF-QLWEAVKQPN--VFL-PTLFVFLWQ 367
+ +KE++ S+ +N+F QL + +K N +FL P L++F++
Sbjct: 218 CLFLKEKEY------------------STNRNIFNQLSDLIKFINTPIFLGPFLYIFVYM 259
Query: 368 ATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTI 427
+ P D A F+F TN+LGF P F+G ++ +ASL+G+ +Y FLKN LRK + T+
Sbjct: 260 SGPDYDDAFFFFCTNKLGFRPSFMGTLRLTYGIASLIGIIIYRVFLKNCSLRKTLIITTL 319
Query: 428 FGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEA 487
+ ++ + L +N+ GIS+E F + ++ +++ +P+ +L A +C G+EA
Sbjct: 320 VSFPIYISPIILTEHINKFLGISNELFVLSGGFLIEAITEIQLLPLFILTANICQPGLEA 379
Query: 488 TLFATLMSISNXXXXXXXXXXXXXXXXXXVTKDSFDNLA 526
++FAT++S+ N + +FDNL+
Sbjct: 380 SVFATILSVKNLGSLTKKGTSSFITYLMKIDSYNFDNLS 418
|
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| TAIR|locus:2017814 AT1G79710 "AT1G79710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 113/397 (28%), Positives = 188/397 (47%)
Query: 136 FAVAMVYFV-QGV-LGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS 193
F V +VY V QG+ GL++++ +Y KD+ + P++ + G +PW+IKPL+G ++D
Sbjct: 51 FGVIIVYGVSQGLGKGLSKVSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDV 110
Query: 194 LPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXX-XXXXXXXXXFSDVVVDSMVV 252
+P+ GYRRR + +DV +D+ V
Sbjct: 111 VPVLGYRRRPYFILAGFLAMISMMVLWLHTNLHLALALSCLVAGSAGVAIADVTIDACVT 170
Query: 253 ERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVA 312
+ + +++ +QSLC S+ G +V SG +V G + V+G+ +T+G+
Sbjct: 171 QCSISHP-TLAADMQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLG----VTAGLL 225
Query: 313 VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-H 371
V+V PSR + F ++ +W+ + V+ P LF+ L A H
Sbjct: 226 VVVGMVLKESPSRSLGRKHVNDKFLDAGSA----IWKTFQYGEVWRPCLFMLLSAAVSLH 281
Query: 372 SDSAMFY-FTTNELG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF 428
MFY +T ++ G F+ E +G + ++ SL+G+ LY FLKN P R +
Sbjct: 282 IHEGMFYWYTDSKDGPSFSKEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSL 341
Query: 429 GTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEAT 488
G + LV +N K G+ D +F + D + ++S+ ++P+LVL+++LCP GME T
Sbjct: 342 SVLSGFLDLILVLRINLKLGLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGT 401
Query: 489 LFATLMSISNXXXXXXXXXXXXXXXXXXVTKDSFDNL 525
FA LMSI + VT+ FDNL
Sbjct: 402 FFALLMSIEHIGHLVSSWGGGVLLHALKVTRTQFDNL 438
|
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| TAIR|locus:2179285 AT5G25050 "AT5G25050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 114/397 (28%), Positives = 192/397 (48%)
Query: 136 FAVAMVYFV-QGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS 193
F V +Y + QG+ G L R+A +Y+KD + P+E+ ++ + +PW+IKPL+G ++D
Sbjct: 47 FGVVSLYGINQGLGGSLGRVATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDV 106
Query: 194 LPLFGYRRRXXXXXXXXXXXXXXXXMATIVESK-YXXXXXXXXXXXXXXFSDVVVDSMVV 252
LP+FG+ RR ++ Y +DV +D+
Sbjct: 107 LPIFGFHRRPYFILAGVLGVVSLLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTA 166
Query: 253 ERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVA 312
+ + S++ +QSLC SS+ G ++ + SG +V G + VFG+ + S V
Sbjct: 167 YNSI-KHPSLASDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVG 225
Query: 313 VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-H 371
++ E V G S +Q + F ++ K +W +K +V+ P+L++++ +
Sbjct: 226 IVFSEPHVPGFSYKQV----NQKFTDAGKA----MWRTMKCSDVWRPSLYMYISLTLGLN 277
Query: 372 SDSAMFY-FTTNELG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF 428
+FY FT ++ G F E +G + + S+ S+L LY LK+ P R + L +
Sbjct: 278 IHEGLFYWFTDSKDGPLFAQETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLL 337
Query: 429 GTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEAT 488
GM + LV LN KFG+ D F + D ++ ++ + +MP+LVL ++LCP G+E T
Sbjct: 338 FALSGMLDLILVFRLNLKFGLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGT 397
Query: 489 LFATLMSISNXXXXXXXXXXXXXXXXXXVTKDSFDNL 525
FA LMSI N VT+ F NL
Sbjct: 398 FFALLMSIDNAGLMTSSWLGGIMLHVLKVTRTEFGNL 434
|
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| TAIR|locus:2160150 AT5G54860 "AT5G54860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 64/202 (31%), Positives = 101/202 (50%)
Query: 325 RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQAT-PHSDSAMFYFTTNE 383
++Q+ L +F+S K F L A KQP + P + F+ T P+ + MFY+ T
Sbjct: 260 KKQSKSLAS-QWFQSLKAATFGLGRAFKQPIILRPMAWFFIAHITVPNLSTVMFYYQTEV 318
Query: 384 LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGL 443
L FLG + V + + G +YN +L+++ LRK L I + + + LV+
Sbjct: 319 LQLDAAFLGTARVVGWLGLMFGTFIYNRYLQDMTLRKSLLFAHIGLSVTILLDMVLVSRA 378
Query: 444 NRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNXXXXX 503
N +G+SD+ + S + ++Q FMP L+L+ RLCP G+E TLFA MSI+N
Sbjct: 379 NVGYGVSDKTMVLFGSALGDAINQLKFMPFLILSGRLCPPGIEGTLFALFMSINNLGNTV 438
Query: 504 XXXXXXXXXXXXXVTKDSFDNL 525
++ SFDN+
Sbjct: 439 GSFMGAGLASLLGISSGSFDNM 460
|
|
| GENEDB_PFALCIPARUM|MAL8P1.13 MAL8P1.13 "integral membrane protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 98/391 (25%), Positives = 185/391 (47%)
Query: 139 AMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFG 198
+++ +QGV L L++ + LKD+ HL PA +++ F +PW IK ++ ISD+ P+FG
Sbjct: 58 SLIAMLQGVEVLCNLSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFG 117
Query: 199 YRRRXXXXXXXXXXXXXXXXMATIVESK-YXXXXXXXXXXXXXXFSDVVVDSMVVERARG 257
YRR+ + I + + +V+ ++ VVE R
Sbjct: 118 YRRKYYLLLGSFLCILSLICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRN 177
Query: 258 ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL--ITSGVAVLV 315
S + S SL + + SY SG ++ + +F + + LP+ TSG ++
Sbjct: 178 CSINSSARNVSLFFAFRKLSFAIMSYLSGYLLLLISKKHIFLIGSFLPICVFTSGFFIIE 237
Query: 316 KEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATPHSDS 374
K ++ +SS ++ + ++ +K + +F+F+ +TP +
Sbjct: 238 KR-----------------NYTKSSIKDQIKCIYSIIKLSYLKNFIIFIFIMMSTPSCGN 280
Query: 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM 434
+F++ TNEL F+P LG++ S+AS + + Y F + +RK+ L +TI T +
Sbjct: 281 TLFFYITNELKFSPNLLGKMAMFQSLASFISIISYMLFFTKIDIRKLLLYSTIIITPFCL 340
Query: 435 TQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLM 494
+ ++ +N I + F I D++++ +++ MP+LVL +RL PEG E+T+++ L+
Sbjct: 341 LPLVVIKKVNYFLFIPNTLFFITDTVLIEFIAEFQTMPILVLCSRLIPEGFESTIYSLLL 400
Query: 495 SISNXXXXXXXXXXXXXXXXXXVTKDSFDNL 525
S +N +T +F NL
Sbjct: 401 SSNNFASIISSFLSSLLTYSLNITSTNFTNL 431
|
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| UNIPROTKB|Q8IBB7 MAL8P1.13 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 98/391 (25%), Positives = 185/391 (47%)
Query: 139 AMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFG 198
+++ +QGV L L++ + LKD+ HL PA +++ F +PW IK ++ ISD+ P+FG
Sbjct: 58 SLIAMLQGVEVLCNLSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFG 117
Query: 199 YRRRXXXXXXXXXXXXXXXXMATIVESK-YXXXXXXXXXXXXXXFSDVVVDSMVVERARG 257
YRR+ + I + + +V+ ++ VVE R
Sbjct: 118 YRRKYYLLLGSFLCILSLICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRN 177
Query: 258 ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL--ITSGVAVLV 315
S + S SL + + SY SG ++ + +F + + LP+ TSG ++
Sbjct: 178 CSINSSARNVSLFFAFRKLSFAIMSYLSGYLLLLISKKHIFLIGSFLPICVFTSGFFIIE 237
Query: 316 KEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATPHSDS 374
K ++ +SS ++ + ++ +K + +F+F+ +TP +
Sbjct: 238 KR-----------------NYTKSSIKDQIKCIYSIIKLSYLKNFIIFIFIMMSTPSCGN 280
Query: 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM 434
+F++ TNEL F+P LG++ S+AS + + Y F + +RK+ L +TI T +
Sbjct: 281 TLFFYITNELKFSPNLLGKMAMFQSLASFISIISYMLFFTKIDIRKLLLYSTIIITPFCL 340
Query: 435 TQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLM 494
+ ++ +N I + F I D++++ +++ MP+LVL +RL PEG E+T+++ L+
Sbjct: 341 LPLVVIKKVNYFLFIPNTLFFITDTVLIEFIAEFQTMPILVLCSRLIPEGFESTIYSLLL 400
Query: 495 SISNXXXXXXXXXXXXXXXXXXVTKDSFDNL 525
S +N +T +F NL
Sbjct: 401 SSNNFASIISSFLSSLLTYSLNITSTNFTNL 431
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| TAIR|locus:2010911 AT1G64890 "AT1G64890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 4.0e-30, P = 4.0e-30
Identities = 100/396 (25%), Positives = 169/396 (42%)
Query: 132 SPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFIS 191
+P + + +FVQG G L NF+L + L ++P+ ++ ++LP + KP+YG +S
Sbjct: 17 NPIRWLLGFGFFVQGFRGFPWLGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVS 76
Query: 192 DSLPLFGYRRRXXXXXXXXXXXXXXXXMATIVESKYXXXXXXXXXXXX---XXFSDVVVD 248
DS+ FG R +A + S +V D
Sbjct: 77 DSVYFFGQHRIPYIAVGALLQAISWLAIAFLSRSNVSILALSIYLLLSNLGASLVEVAND 136
Query: 249 SMVVERARGE-SQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI 307
++V E + + S++ SG L S W S+ GGI+ + G + + + F V +L L+
Sbjct: 137 AIVAESGKQKTSETQSGELPSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGILALL 196
Query: 308 TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQ 367
V + ++E+ + NLP +PS ++++ L +++P + ++ +
Sbjct: 197 QFLVTINIREKSL-------NLP-ENPSPAGGIRKHLSDLSHVLRKPEISYSIAWIAVST 248
Query: 368 AT-PHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANT 426
A P MF++ T L LG K +A LL YN +LK + RK+ A
Sbjct: 249 AVVPVLTGTMFFYQTKFLKIDASLLGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQ 308
Query: 427 IFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGME 486
+ ++ + V G+ R G+SD + + S L L +P VL ARLCP G E
Sbjct: 309 VTIAFFVISDLLFVKGVYRDLGVSDSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCE 368
Query: 487 ATLFATLMSISNXXXXXXXXXXXXXXXXXXVTKDSF 522
+L A +MS VT+D F
Sbjct: 369 GSLMAFVMSAIALAFIVSGYLGIVLASFVGVTEDDF 404
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SKZ5 | FBT1_ARATH | No assigned EC number | 0.7341 | 0.9717 | 0.9821 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.X.5847.1 | hypothetical protein (538 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.I.3658.1 | hypothetical protein (201 aa) | • | 0.502 | |||||||
 | gw1.29.56.1 | hypothetical protein (278 aa) | • | 0.501 | |||||||
 | eugene3.121720001 | hypothetical protein (63 aa) | • | 0.501 | |||||||
 | gw1.II.1221.1 | hypothetical protein (155 aa) | • | 0.500 | |||||||
 | estExt_Genewise1_v1.C_LG_XIV1543 | SubName- Full=Putative uncharacterized protein; (151 aa) | • | 0.500 | |||||||
 | eugene3.00080706 | hypothetical protein (213 aa) | • | 0.499 | |||||||
 | estExt_fgenesh4_pg.C_LG_V0629 | hypothetical protein (251 aa) | • | 0.499 | |||||||
 | estExt_Genewise1_v1.C_1340217 | hypothetical protein (132 aa) | • | 0.498 | |||||||
 | gw1.XV.3200.1 | hypothetical protein (265 aa) | • | 0.497 | |||||||
 | gw1.II.1028.1 | hypothetical protein (152 aa) | • | 0.497 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 566 | |||
| TIGR00788 | 468 | TIGR00788, fbt, folate/biopterin transporter | 1e-165 | |
| pfam03092 | 425 | pfam03092, BT1, BT1 family | 1e-156 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-08 | |
| TIGR02718 | 390 | TIGR02718, sider_RhtX_FptX, siderophore transporte | 2e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-05 | |
| TIGR00901 | 356 | TIGR00901, 2A0125, AmpG-like permease | 9e-04 | |
| pfam11700 | 475 | pfam11700, ATG22, Vacuole effluxer Atg22 like | 0.002 |
| >gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter | Back alignment and domain information |
|---|
Score = 476 bits (1228), Expect = e-165
Identities = 181/449 (40%), Positives = 246/449 (54%), Gaps = 10/449 (2%)
Query: 127 FGVDLSPDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPL 186
F V FV+G+ GL RL ++ L DDL LD A + G SSL W +KP
Sbjct: 20 FSFHPRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF 79
Query: 187 YGFISDSLPLFGYRRRSYLVLSGLLG-ALSWSLMATIVESKYSAALSILLGSLSVAFSDV 245
G +SD+ PLFGY +R YLVLSGLLG A+ + L+ V S AA I L +L+ A DV
Sbjct: 80 AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDV 139
Query: 246 VVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP 305
+VDS+ ER R ES S SL S WG+SA GG++SS G ++D R +F +TA L
Sbjct: 140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALL 198
Query: 306 LITSGVAVLVKEQQVLGPSR-----RQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPT 360
L+ V+ L KE++ R N+ L + K + L A++ + P
Sbjct: 199 LLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPL 258
Query: 361 LFVFL-WQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR 419
+F+FL + P + ++F TT L P F G K V ++ SL GVG Y+ FLK P R
Sbjct: 259 IFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR 318
Query: 420 KIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAAR 479
+F T+ T + + LV N FGISDE F +GDS+I VL+Q FMP LVL AR
Sbjct: 319 LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLAR 378
Query: 480 LCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLP 539
LCP G E+++FA L SI + GS + G LG L + G+T D+ +NL LI+ +L+ LLP
Sbjct: 379 LCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP 438
Query: 540 LPLIGLLP--QDSPDSTSKESEDIEMKSN 566
LPL+ LLP +D D+ K + N
Sbjct: 439 LPLLHLLPRLEDVIDTEGKRAISKAAPEN 467
|
The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468 |
| >gnl|CDD|111933 pfam03092, BT1, BT1 family | Back alignment and domain information |
|---|
Score = 453 bits (1168), Expect = e-156
Identities = 189/430 (43%), Positives = 246/430 (57%), Gaps = 15/430 (3%)
Query: 145 QGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRS 203
QGV G L+RL+ F LKD L +DPA +SG ++LPW+IKP G +SD LFGYRRR
Sbjct: 1 QGVAGGLSRLSTQFMLKDRLGIDPARYQRLSGLATLPWVIKPFTGVLSDGFALFGYRRRP 60
Query: 204 YLVLSGLLG---ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQ 260
YL LSGLLG ALS+ L+ S AA I L SL A DV+ D++ ER R E
Sbjct: 61 YLALSGLLGGAFALSYGLLPAKESSAAVAAAFIFLSSLGKALVDVLSDALYSERGRQEPL 120
Query: 261 SVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV 320
+ SL S WG SA GGI+ S SG ++D + + F VTA L L+T A ++KE++V
Sbjct: 121 A-GPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAALQLLTCVDAAVLKEEEV 179
Query: 321 LGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFV-FLWQATPHSDSA-MFY 378
LG R P +++ + + W+A + P + PTL W A A MFY
Sbjct: 180 LGLGRPPV-----PCLLGLNREVISRNWKAFRYPEILAPTLTWISFWAAPLVIAKADMFY 234
Query: 379 FTTNELG---FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT 435
+ TNELG F+ F G VK + S+A LLGV LYN FLK P R F T+ G+
Sbjct: 235 YQTNELGGPNFSYSFYGTVKVIGSIAGLLGVTLYNRFLKKHPYRLTFGVTTVLQVLSGLF 294
Query: 436 QVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMS 495
+ LV NR GISD + +GDS+IL VL FMP LVL ARLCP G E+T+FA L S
Sbjct: 295 DLILVKRWNRYLGISDHVYILGDSIILEVLYMLKFMPFLVLLARLCPRGSESTVFALLAS 354
Query: 496 ISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTS 555
I+N G ++ LGA L + GVT+D F NL L+++ +L +LLPLPL+GLLP +
Sbjct: 355 IANLGQIVSSSLGALLMEYLGVTEDQFSNLPLLLLIGSLCTLLPLPLLGLLPPSARICDK 414
Query: 556 KESEDIEMKS 565
E I +
Sbjct: 415 DEDGKIVKDA 424
|
Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters. One such protein, previously termed (and is still annotated as) ORFG, was shown to encode a biopterin transport protein using null mutants, thus being subsequently renamed BT1. The significant similarity of ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative transmembrane protein and another member of this family) was previously noted. This family also contains five putative Arabidopsis thaliana proteins of unknown function. In addition, it also contains two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). Length = 425 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 72/371 (19%), Positives = 131/371 (35%), Gaps = 28/371 (7%)
Query: 136 FAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETA-VISGFSSLPWLIKPLYGFISDSL 194
A + + +LG A + YL +DL + P E +++ FS L +PL G +SD
Sbjct: 3 LAAFLAGLGRSLLGPA---LPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR- 58
Query: 195 PLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER 254
+ RR L++ LL AL L+ L +L G L +++ +
Sbjct: 59 ----FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG-LGGGALFPAAAALIADW 113
Query: 255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVL 314
E + + L S +G G + G + +G R F + A+L L+ + +A L
Sbjct: 114 FPPEERGRALGLLSAGFG---LGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170
Query: 315 VKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDS 374
+ R P E + + W+ + + V L + L+ +
Sbjct: 171 LL--------PRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALL 222
Query: 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM 434
LG + G + + + +G L G L + R+ L + L
Sbjct: 223 TYLPLYQEVLGLSALLAGLLLGLAGLLGAIG-RLLLGRLSDRLGRRRRLLLALLLLILAA 281
Query: 435 TQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLM 494
+ L+ + + L+L + F + L + L P+ T
Sbjct: 282 LGLALL------SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYN 335
Query: 495 SISNGGSVLGG 505
+ + G LG
Sbjct: 336 TAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 78/415 (18%), Positives = 147/415 (35%), Gaps = 68/415 (16%)
Query: 138 VAMVYFVQGVLGLARLAVNFYL---KDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDS 193
+ +++ + GL R ++ L +DL L ++ +I SL + + L G++SD
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD- 59
Query: 194 LPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVE 253
FG RR ++L GLL SL+ S + + L L +++ E
Sbjct: 60 --RFGRRR---VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 254 RARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAV 313
+ + + L S +G G ++ G + ++ G R++F + A+L L+ + + +
Sbjct: 115 WFPPKERGRALGLFSAGFG---LGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL 171
Query: 314 LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS- 372
+ + L L FL +
Sbjct: 172 FLL-------------------------------------RLLLLLALAFFLLSFGYYGL 194
Query: 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL 432
+ + + LG + G + + + +LG L + R++ L + AL
Sbjct: 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAAL 254
Query: 433 GMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFAT 492
G+ + L L + L+L +F +L LA+ L P T
Sbjct: 255 GLLLLALAPSL---------ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL 305
Query: 493 LMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLP 547
+ + G LG LL L G + ++ +LL L+ LLP
Sbjct: 306 FNTFGSLGGALGPLLAGLLLDTGGYG--------GVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|131765 TIGR02718, sider_RhtX_FptX, siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 75/390 (19%), Positives = 144/390 (36%), Gaps = 38/390 (9%)
Query: 138 VAMVYFVQGV-LGLARLAVNFYLKDDLHLDPAETAVISGFS--SLPWLIKPLYGFISD-- 192
+ ++Y QG+ +GLA A+ L++D A ++ LPW++K L+ + D
Sbjct: 6 LGLLYLSQGIPIGLAMDALPTLLRED----GAPLTALAFLPLVGLPWVVKFLWAPLVDNW 61
Query: 193 -SLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSI---LLGSLSVAFSDVVVD 248
S L RRRS+++ L + + +A + A ++ SL+ A D+ D
Sbjct: 62 WSWRL--GRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATD 119
Query: 249 SMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT 308
M E G + + ++Q G + + +G R F + A +PL +
Sbjct: 120 GMAAEHFNGRTLAKGNAVQI---AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLAS 176
Query: 309 SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQA 368
+ +K+ + E+ L+ ++P + L
Sbjct: 177 LVCVLWLKD--------------RAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAM 222
Query: 369 TPHSDSAMFYFTTNELGFTPEFLGRVKFVTS-VASLLGVGLYNGFLKNVPLRKIFLANTI 427
T S + + G+ E++GR+ V LLG G ++ L + F I
Sbjct: 223 TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF----I 278
Query: 428 FGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEA 487
G L + L + A S ++++ + + + R +G +A
Sbjct: 279 LGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQA 338
Query: 488 -TLFATLMSISNGGSVLGGLLGAGLTQLFG 516
T + S + G ++ + LT FG
Sbjct: 339 GTDVTAVQSTRDLGELIASSIAGYLTDRFG 368
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes [Transport and binding proteins, Cations and iron carrying compounds]. Length = 390 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 70/389 (17%), Positives = 136/389 (34%), Gaps = 52/389 (13%)
Query: 185 PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESK-------YSAALSILLGS 237
P+ G I D + R +L++ + A+S L+ Y+ ILLG
Sbjct: 53 PIVGAIIDRTRTRWGKFRPWLLIGAIPLAISLVLLFATPFGLSMTAKLIYAFITYILLG- 111
Query: 238 LSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG---- 293
L+ F ++ S++ R SL S + GG++ + + +V G
Sbjct: 112 LAYTFVNIPYWSLIPVLTR--DPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNG 169
Query: 294 ----VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWE 349
+ L + KE+ + P ++ K ++ +++
Sbjct: 170 AKGYFLAALIIAILAVVGFLICFAGTKERVSVPPEQK-------------EKVSLRDMFK 216
Query: 350 AVKQPNVFLPTLFVFLWQATPH--SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVG 407
A+ + L L ++L A + + Y+ T LG + + ++A++LG
Sbjct: 217 ALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYVLGN-AGLFSVLLLIGTIAAILGAP 275
Query: 408 LYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQ 467
L+ K ++ FL + + FL G S F + ++ +
Sbjct: 276 LWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPG-------SLWLFLVL-VVLAGIGLG 327
Query: 468 ASFMPVLVLAARLCPEG-------MEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKD 520
+ + + A + G E F+ G LGG + L G +
Sbjct: 328 LATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAFAGYVAN 387
Query: 521 SFD-NLATLIILCNLSSLLP--LPLIGLL 546
+ + A L + L +L+P L L+ LL
Sbjct: 388 ATAQSAAALSGIRLLFTLIPAVLALLALL 416
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233177 TIGR00901, 2A0125, AmpG-like permease | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 79/375 (21%), Positives = 139/375 (37%), Gaps = 47/375 (12%)
Query: 148 LGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDS--LPLFGYRRRSYL 205
LGL + ++L+ ++ S LP+ +K L+ + D+ LP FG RRRS+L
Sbjct: 4 LGLVGNTLPYWLRSK-NVSLKTIGFFS-LVGLPYSLKFLWSPLVDTVYLPFFG-RRRSWL 60
Query: 206 VLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAF----SDVVVDSMVVERARGESQS 261
VL+ +L +++ +V S L+ L + +AF D+ +D+ +E E
Sbjct: 61 VLTQVLLLSLLLILSFLVPSTDLPLLAGL--AFLIAFFSATQDIALDAWRLEILSDEELG 118
Query: 262 VSGSLQSLCWGSSAFGG-----IVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAV-LV 315
++ + + + +++S + ++F TALL L V + L
Sbjct: 119 YGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLA 178
Query: 316 KEQQVLGP-SRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDS 374
KE Q + + P + FQ L L + L++ DS
Sbjct: 179 KEPQEDASVPKPLTQAVLKPI------REFFQR---KNMIQALLLLLLIVLYKL---GDS 226
Query: 375 AMFYFTTN---ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK-IFLANTIFGT 430
A TT ++GF+ E + V + + + GL G + I A +FG
Sbjct: 227 AATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGII---MQPLNILYALLLFGI 283
Query: 431 ALGMTQVFLV----TGLNRKFGISDEW---FAIGDSLILTVLSQASFMPVLVLAARLCPE 483
+T V G + I + L +F+ ++L
Sbjct: 284 VQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFV---AFLSKLSNP 340
Query: 484 GMEATLFATLMSISN 498
AT A L S+S
Sbjct: 341 KFGATQMALLSSLSA 355
|
[Cellular processes, Adaptations to atypical conditions]. Length = 356 |
| >gnl|CDD|221171 pfam11700, ATG22, Vacuole effluxer Atg22 like | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 78/399 (19%), Positives = 135/399 (33%), Gaps = 71/399 (17%)
Query: 197 FGYRRRSYLVLSGLLGALSWSLMATIVESKY--SAALSILL-----GSLSV---AFSDVV 246
+G R++ L+ LLG LS L + +Y A L I+ SL +
Sbjct: 95 YGNYRKNLLIAFALLGGLSTILFLGVTPDQYLLGAVLYIIGNICFGASLVFYNSYLPLLA 154
Query: 247 VDSMVVERARGESQSVSGS-------------LQSLCWGSSAFGGIVSSYFSGSMVDA-- 291
D + E+ + SL + G I+ S ++ A
Sbjct: 155 RDDPELRAKEEEADGTESREEYDPLDSLTRTRISSLGFALGYIGAILVLIISILILFALG 214
Query: 292 -------YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNM 344
+R V + L L+ S L L + LP G KQ
Sbjct: 215 SPDNQGTLSLRLVLLIAGLWWLLFSIPWFLW-----LKDRPGKGLPSGLNYLTAGWKQ-- 267
Query: 345 FQLWEAVKQ----PNVFLPTLFVFLWQATPHSDSAMF-YFTTNELGFTPEFLGRVKFVTS 399
L KQ + L + FL + ++ F LG + L + +
Sbjct: 268 --LGRTFKQARKLKDALLFLVAWFLLSDGIATVLSLAILFAKTVLGMSTAALTVLSILAQ 325
Query: 400 VASLLGVGLYNGFLK---NVPLRKIFLANTIFGTAL---GMTQVFLVTGLNRKFGISDEW 453
+A++LG L+ +L + ++ +A + + G+ + K G+ + W
Sbjct: 326 IAAVLGAFLW-PYLSRRFGLKTKQTLIAIIVLWELIPLYGLLGII-----PNKIGLHNPW 379
Query: 454 --FAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAG 510
+ + L L + + L P G EA F+ G S +G L+
Sbjct: 380 EFYLLA---ALYGLVLGGLSSYSRSMYSELIPRGKEALFFSLFAITGKGSSWIGPLIVGA 436
Query: 511 LTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQD 549
+T G +++F LA L + L LPL+ L+ +
Sbjct: 437 ITDRTGNIRNAFIFLAVLFV-------LGLPLLLLVDVE 468
|
Autophagy is a major survival survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxes, which mediate the efflux of leucine and other amino acids resulting from autophagy. This family also includes other transporter proteins. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.98 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.98 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.98 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.98 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.97 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.96 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.95 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.95 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.94 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.94 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.94 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.92 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.92 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.92 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.92 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.92 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.91 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.91 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.9 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.9 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.89 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.89 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.89 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.88 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.88 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.87 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.87 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.87 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.86 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.84 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.78 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.78 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.78 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.68 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.65 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.63 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.63 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 99.59 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.48 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.47 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.44 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.42 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.41 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.39 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.38 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.37 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.34 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.34 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.33 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.33 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.3 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.27 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.26 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.25 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.25 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.24 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.24 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.23 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.23 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.21 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.21 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.2 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.2 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.2 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.19 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.19 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.19 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.19 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.18 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.16 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.15 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.15 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.14 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.13 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.13 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.12 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.12 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.12 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.11 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.11 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.1 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.1 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.1 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.1 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.09 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.08 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.07 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.07 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.06 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.06 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.06 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.05 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.05 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.05 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.04 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.04 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.03 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.03 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.03 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.02 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.02 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.02 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.01 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.01 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.01 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.01 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.0 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.99 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.98 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.98 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.94 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.94 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.93 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.93 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.87 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.87 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.86 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.84 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.83 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.82 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.81 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.81 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.78 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.78 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.78 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.77 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.77 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.76 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.76 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.75 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.74 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.73 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.71 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.69 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.65 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.64 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.6 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.6 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.56 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.51 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.49 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.49 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.48 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.46 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.44 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.42 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.42 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.41 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.35 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.32 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.32 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.3 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.3 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.3 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.28 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.28 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.27 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.2 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.16 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.15 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.07 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.06 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.99 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.92 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.87 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.76 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.74 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.63 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.49 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.46 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.35 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.32 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.29 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 97.28 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.16 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.08 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.95 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.91 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.9 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.87 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.78 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.72 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.64 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.63 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.2 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.14 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 96.0 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.8 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.78 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.24 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.99 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 94.91 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.43 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.38 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.99 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.75 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 91.94 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.33 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 91.23 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 89.14 | |
| COG2836 | 232 | Uncharacterized conserved protein [Function unknow | 87.76 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.37 |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=311.34 Aligned_cols=414 Identities=42% Similarity=0.616 Sum_probs=330.6
Q ss_pred cchHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 133 PDNFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
.....+...|+.+|+.++....+++++++++|++.++++.+.++..+++.+.++||+++||++.+|++||++++++.++.
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHH
Confidence 34566777899999998888899999999999999999999999999999999999999998888877888888888776
Q ss_pred -HHHHHHHHhhcchH-HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 213 -ALSWSLMATIVESK-YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 213 -~~~~~~~~~~~~~~-~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
.++...++. .++. ....++.++.+++.+..+++..+++.|..+ ++++.++..++..+....+|.++|+.++|.+.+
T Consensus 106 ~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 106 SAILYGLLPG-KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHhccc-ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 3443 344458899999999999999999999998 666777778888887777999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCC-----CCCCccccchHHHHHHHHHHhcccchhHHHHHHHH
Q 008417 291 AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLP-----LGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFL 365 (566)
Q Consensus 291 ~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (566)
.++|+..|++.+++.++..+..++++|++.....+.++.+ ....+..+..++..+++++.+++|.++..+++.++
T Consensus 184 ~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl 263 (468)
T TIGR00788 184 KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFL 263 (468)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 9999999999988887766666778886421111100000 00000111234446678888899999888877777
Q ss_pred -HhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccc
Q 008417 366 -WQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLN 444 (566)
Q Consensus 366 -~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (566)
+.........++++..+.+|+++.+.|++....+++.+++..+.+++.+|++.|+.+.++.++..++.+........++
T Consensus 264 ~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~ 343 (468)
T TIGR00788 264 SYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWN 343 (468)
T ss_pred HHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccc
Confidence 6555444444444445678999999999999999999999999999999999999999988888877655433333444
Q ss_pred cccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchh
Q 008417 445 RKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDN 524 (566)
Q Consensus 445 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~ 524 (566)
...++...+++.+..++.++..+..+.|...++++.+|++.+|+.+|+.+++.++|..+++.++|.+.+.+|...+++.+
T Consensus 344 ~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~ 423 (468)
T TIGR00788 344 LAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNN 423 (468)
T ss_pred cccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 33444444567777888888888999998999999999999999999999999999999999999999999988888888
Q ss_pred hHHHHHHHHHHHhhhhhhhccCCC
Q 008417 525 LATLIILCNLSSLLPLPLIGLLPQ 548 (566)
Q Consensus 525 ~~~~~~~~~~~~~i~~~~~~~~~~ 548 (566)
.+...+++.++.++++.+.+++|+
T Consensus 424 ~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 424 LWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999988888997
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=264.53 Aligned_cols=346 Identities=17% Similarity=0.153 Sum_probs=279.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
.+.+.+..|+.+...++...+.+.+.+++|+|..+.|++.++|.+++.+ +|+...++|| +.||++++....++.
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-----~~Rr~lLl~~l~lFi 89 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-----LERRRLLLGLLALFI 89 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHH
Confidence 6667777788777766666666777788999999999999999999988 7899999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
++.+++++ ++|++.+++.|++.|+..+.......++..++. ++++|+++.++...+.+++.++|..++.++.+.+|
T Consensus 90 ~~n~l~al-Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv---pp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 90 VSNLLSAL-APSFAVLLLARALAGLAHGVFWSIAAALAARLV---PPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 99999999 999999999999999999999999999999999 77889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 294 VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 294 wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
||+.|++.+.+.++ .+..+..+| ++...+ +.+...++..+.+|+|.++..++..++.....+.
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~--------------~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~ 229 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLLP--PSEISG--------------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFA 229 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CccCCC--------------CCCcchhHHHHHhcCchHHHHHHHHHHHHcchhh
Confidence 99999999999988 566667788 111111 1223455667889999999999887777666656
Q ss_pred hhhhHHH-HhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 373 DSAMFYF-TTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 373 ~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
..+|.-. ..+..|++....+++...++++.++|+.+.|++.|| +.++.+.....+..+..+.+.+.....
T Consensus 230 ~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~-------- 300 (394)
T COG2814 230 LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP-------- 300 (394)
T ss_pred hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH--------
Confidence 5555544 445579999999999999999999999999999999 888888877777776665544333211
Q ss_pred chhhhhHHHHHHHhhhhhhHHHH-HHHHhhCC--CCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVL-VLAARLCP--EGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+......++ .+....|.. .+..+..+ ++.+..+.+++....++|.++|..++|.+.++.|+..
T Consensus 301 -~~~~~~~~~----wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~ 366 (394)
T COG2814 301 -ALALALLFL----WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA 366 (394)
T ss_pred -HHHHHHHHH----HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 111111111 222222222 44444443 5889999999999999999999999999999988765
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=281.23 Aligned_cols=415 Identities=43% Similarity=0.756 Sum_probs=341.0
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhc---chH
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV---ESK 226 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~---~~~ 226 (566)
+....+.+++++++|+++++...+.++..+++.+.|++|.++|.+|.+|++||++++++.++..++.+.++... .+.
T Consensus 7 l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 7 LSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 55777888999999999999999999999999999999999999999999999999999998877766666532 356
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHH
Q 008417 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL 306 (566)
Q Consensus 227 ~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~ 306 (566)
....++.++..+|.+..++...+++.|..++++.. ++..++..+....+|.+++..++|.+.+..++++.|.+.+++..
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPL 165 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHH
Confidence 67778889999999999999999999999887777 99999999999999999999999999999999999999988887
Q ss_pred HHHHhheeeccccccCCCcCCC-C-CCCCCccccchHHHHHHHHHHhcccchhHHHH-HHHHHhhcccchhh-hHHHHhh
Q 008417 307 ITSGVAVLVKEQQVLGPSRRQN-L-PLGDPSFFESSKQNMFQLWEAVKQPNVFLPTL-FVFLWQATPHSDSA-MFYFTTN 382 (566)
Q Consensus 307 ~~~~~~~~~~e~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 382 (566)
+.++..+++.|++...+..+.. . +..........++..+++++.++++.++...+ +.+++......... .+++..+
T Consensus 166 l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~ 245 (433)
T PF03092_consen 166 LMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTD 245 (433)
T ss_pred HHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEec
Confidence 7544444444432211111100 0 00011111225778889999999999998887 67777665555444 4555556
Q ss_pred ccC---CChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHH
Q 008417 383 ELG---FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDS 459 (566)
Q Consensus 383 ~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 459 (566)
..+ +++...|.+..+..++.++|..+..++..+...|+++....++..+..+.-.++...++..++++..++++|..
T Consensus 246 ~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~ 325 (433)
T PF03092_consen 246 ALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDT 325 (433)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhH
Confidence 666 99999999999999999999999999999999999888888777766665555556677777888889999999
Q ss_pred HHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHHHHHhhh
Q 008417 460 LILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLP 539 (566)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~i~ 539 (566)
++..+.+...++|...+.++++|++.+|+.+|+..++.++|..++..++..+.+.++....++.+++.+++++.++.+++
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~ 405 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLP 405 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred hhhhccCCCCCCCCCccchhhhhhhc
Q 008417 540 LPLIGLLPQDSPDSTSKESEDIEMKS 565 (566)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~e~~~ 565 (566)
+.+..++|++++..++.+.++++.|+
T Consensus 406 l~ll~lLp~~~~~~~~~~~~~~~~~~ 431 (433)
T PF03092_consen 406 LPLLFLLPPQKRITDELDADGKASKK 431 (433)
T ss_pred HHHHHHcCCCchhhHHHhhcCCcccC
Confidence 99988889877766544444444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=265.05 Aligned_cols=326 Identities=15% Similarity=0.094 Sum_probs=239.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 008417 155 VNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSI 233 (566)
Q Consensus 155 l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 233 (566)
+.+.+.+++|.+..++|++.+.+.+++.+ ++++|+++|| +|||+++..+.++.+++.+.+++ +++++.++++|
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r 104 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-----VERRKLLIGLFVLFIASHVLSAL-AWNFTVLLISR 104 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHH
Confidence 34556678999999999999999888877 7788999999 99999999999999999999998 99999999999
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHH-HHhh
Q 008417 234 LLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT-SGVA 312 (566)
Q Consensus 234 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~-~~~~ 312 (566)
+++|++.+...+...+++.|++ ++++|++.+++...+..+|.++||.+++.+.+.+|||+.|++.+++.++. .+..
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~---~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVA---PAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI 181 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888899999999 56678888898888889999999999999999999999999999887764 3334
Q ss_pred eeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh-HHHHhhccCCChhhh
Q 008417 313 VLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTNELGFTPEFL 391 (566)
Q Consensus 313 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~ 391 (566)
..+||+++++ +...++..+.++++.++......++..........+ .+++.+..|++..+.
T Consensus 182 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~ 243 (390)
T PRK03545 182 KLLPLLPSEH------------------SGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFA 243 (390)
T ss_pred HhCCCCCCCC------------------cchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHH
Confidence 4455532210 011234556788887765544433332222222233 333444579999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhH
Q 008417 392 GRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFM 471 (566)
Q Consensus 392 g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 471 (566)
+.+.....++.+++.++.+++.||+++|+. ..+..+..+....+..... +. +......++.++. .....
T Consensus 244 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~~--~~-------~~~~~~~~l~g~~-~~~~~ 312 (390)
T PRK03545 244 TLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAAN--SE-------WHLSVLSIFWGIA-IMCIG 312 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHhc--hH-------HHHHHHHHHHHHH-Hhcch
Confidence 999999999999999999999999987654 4444443333322221111 11 1111111222222 22222
Q ss_pred HHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 472 PVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 472 ~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+.. ..+.+..| +.+++++|+++...++|..+|+.++|.+.+.+|+..
T Consensus 313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~ 360 (390)
T PRK03545 313 LAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSS 360 (390)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhH
Confidence 223 66667766 688999999999999999999999999999988765
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=255.20 Aligned_cols=381 Identities=15% Similarity=0.098 Sum_probs=276.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
++.+++.|....+..-......+.+.++.++|.+|+|++.+.+.+.|.+ ..++|.++|| .+.|..+.+++++.+
T Consensus 31 f~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-----~npr~fm~~gLilsa 105 (448)
T COG2271 31 FLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-----SNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-----CCCceeehHHHHHHH
Confidence 4556666666666544444556677788889999999999999999999 6888999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHH--hHhhcc
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS--GSMVDA 291 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~--~~l~~~ 291 (566)
+..+++++ .++.+.+.++.++.|+..+...+++...+..|+ ++++||+..++.+.+.++|..+.|++. +++..+
T Consensus 106 i~nil~Gf-s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf---sr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 106 IVNILFGF-SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF---SRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc---CccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 99999999 899999999999999999999999999999999 778899999999999999999999999 888888
Q ss_pred cChHHHHHHHHHHHHH-HHHhheeeccccccCCCcC------CCCCC-CCCccc--cchHHHHHHHHHHhcccchhHHHH
Q 008417 292 YGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRR------QNLPL-GDPSFF--ESSKQNMFQLWEAVKQPNVFLPTL 361 (566)
Q Consensus 292 ~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~------~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 361 (566)
.+||..|++.++++++ ++++++.++++|+..-... +..+. ++++.. -+.++.+ ....++||.+|.+++
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~--~~YVL~Nk~iW~la~ 259 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF--VKYVLKNKLIWLLAL 259 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHH--HHHHHcChHHHHHHH
Confidence 8999999999999988 7777778888776521110 00000 000000 0111111 234689999998885
Q ss_pred H-HHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC--CcchhhHHHHHHH-HHHHhHHH
Q 008417 362 F-VFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV--PLRKIFLANTIFG-TALGMTQV 437 (566)
Q Consensus 362 ~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--g~~~~~~~~~~~~-~~~~~~~~ 437 (566)
. .++|..-+....-...+..+..|++...+++....+-+++++|.+++|+++||. |||....+...+. .++.+.++
T Consensus 260 a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w 339 (448)
T COG2271 260 ANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW 339 (448)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 5 455555444434344455566899999999999999999999999999999997 4554443333222 22222222
Q ss_pred HhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH---HHHHhhCCCCchHHHHHHHHHHHhh-hhhhHhHHHHHHHH
Q 008417 438 FLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL---VLAARLCPEGMEATLFATLMSISNG-GSVLGGLLGAGLTQ 513 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~~~g~l~~ 513 (566)
+.... +. .+..++... ++...+.|.+ ....|..|++..|++.|+...+.++ |.+.+....|++.|
T Consensus 340 ~~~~~-~~-------~l~~~~l~~---iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d 408 (448)
T COG2271 340 LAPNG-SY-------LLDAILLFI---IGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD 408 (448)
T ss_pred cCCCc-cH-------HHHHHHHHH---HHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence 22211 11 111111111 2223333333 5667889999999999999999999 88899999999999
Q ss_pred hcCCCCccchhhHHHHHHHHHHHhhhhhh
Q 008417 514 LFGVTKDSFDNLATLIILCNLSSLLPLPL 542 (566)
Q Consensus 514 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 542 (566)
.+|... .+..+.++++++.+.++.
T Consensus 409 ~~gW~g-----~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 409 TWGWDG-----GFIVLSIAALLAILLLLP 432 (448)
T ss_pred cCCCcc-----hHHHHHHHHHHHHHHHHH
Confidence 866655 555555555554443333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=263.20 Aligned_cols=364 Identities=16% Similarity=0.191 Sum_probs=261.8
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcchhhhccccc--CcCCCCCchHhHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSG 209 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~--~~~G~grr~~~~~~~ 209 (566)
++.+.++.++|.+++. ......++.++++ .|.+..++|.. +....++..+++||+++||+ +++| +||++++.+.
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~~~~~~l~gpl~Dr~~~~~~G-rrr~~ll~~~ 88 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQAYVFKFLWSPLMDRYTPPFLG-RRRGWLLATQ 88 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCC-CchHHHHHHH
Confidence 4477788889999997 6777788888876 59999999997 56666677899999999994 3445 5556788888
Q ss_pred HHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhH
Q 008417 210 LLGALSWSLMATI--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS 287 (566)
Q Consensus 210 ~~~~~~~~~~~~~--~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 287 (566)
++.+++...+++. ..+++.+.+.+++.+++.+...+...+++.|++ ++++|+...++...+..+|.++++.++++
T Consensus 89 i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~---~~~~rg~~~~i~~~g~~lG~llg~~l~~~ 165 (491)
T PRK11010 89 LLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVL---PAEERGAGAAISVLGYRLAMLVSGGLALW 165 (491)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777663 246788889999999999999999999999999 55667888888888889999999999999
Q ss_pred hhc-ccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHH
Q 008417 288 MVD-AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLW 366 (566)
Q Consensus 288 l~~-~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (566)
+.+ ..|||..|++.+++.++..+..+++||+++..+. +++ ..+...+++.+.++++..+...+..+++
T Consensus 166 l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~-~~~----------~~~~~~~~l~~~~~~~~~~~~ll~~~l~ 234 (491)
T PRK11010 166 LADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV-PKT----------LEQAVVAPLRDFFGRNNAWLILLLIVLY 234 (491)
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccc----------hhhhHHHHHHHHHcCcCHHHHHHHHHHH
Confidence 988 5799999999998877765555567776432111 000 0111223445567777766665555554
Q ss_pred hhcccchhhh-HHHHhhccCCChhhhhHHH-HHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccc
Q 008417 367 QATPHSDSAM-FYFTTNELGFTPEFLGRVK-FVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLN 444 (566)
Q Consensus 367 ~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~-~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (566)
.........+ .+++.+++|+++.+.+++. ....++.+++.++.|++.||+++|+.+.++.++..+..+.++......+
T Consensus 235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~ 314 (491)
T PRK11010 235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK 314 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4433333333 3333456899999999987 4667899999999999999999988777666655554433322111111
Q ss_pred cccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 445 RKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 445 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
. .+......++..+.++.......++..+.++++..++.+|+.++...+|..+++.+.|.+.+..|+..
T Consensus 315 ~------~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~ 383 (491)
T PRK11010 315 N------LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPT 383 (491)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 1 01111122222223333344444788899999999999999999999999999999999999887543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=263.50 Aligned_cols=363 Identities=13% Similarity=0.143 Sum_probs=251.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
...+.+.++..++.........+.+++++|+++.+.+++.+++.+++.+ ++++|+++|| +|||++++++.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-----~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-----FGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChHHHHHHHHHHH
Confidence 4445556666666544445555677788999999999999999999888 6788999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
++.+++++ +++++.++++|++.|++.+...+....++.|++ ++++|++..++...+..+|.++++.+.+.+.+.+|
T Consensus 95 ~~~~~~~~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 95 VGTGLSGL-ASGVIMLTLSRFIVGMGMAGEYACASTYAVESW---PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC---CHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 99999988 899999999999999999998889999999999 55667778888888888999999999999988899
Q ss_pred hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHH---HHhhcc
Q 008417 294 VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF---LWQATP 370 (566)
Q Consensus 294 wr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 370 (566)
||+.|++..+..++.+......||++++.+++.+++++..+ ...+....+.++.++++.++....... .+....
T Consensus 171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (426)
T PRK12307 171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQ---SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGAN 247 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccc---cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 99999986544333333223344443211111000000000 011111224456677776554332211 111111
Q ss_pred cchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccc
Q 008417 371 HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGIS 450 (566)
Q Consensus 371 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (566)
.....+.+.+.++.|+++...+.+.....++.+++.++.+++.||+++|+.+..+.++..+..+.+..... . .
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~----- 320 (426)
T PRK12307 248 WPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ-D-N----- 320 (426)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc-c-c-----
Confidence 12233445555667999999999889999999999999999999999999888777665554333322111 1 0
Q ss_pred cchhhhhHHHHHHHhhhhhhHHH-HHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 451 DEWFAIGDSLILTVLSQASFMPV-LVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 451 ~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
....+...+..........+. ..++.+.+|++.+|++.|+...+.++++.++|.+.|++.+.+|+.
T Consensus 321 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 321 --YLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred --HHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 011111111000111111222 267789999999999999999999999999999999999987753
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=263.48 Aligned_cols=364 Identities=11% Similarity=0.046 Sum_probs=244.9
Q ss_pred HHHHHHHHHhhh-hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHH
Q 008417 138 VAMVYFVQGVLG-LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS 215 (566)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~ 215 (566)
.++.++...+.. .....++ .+.+++|++..+.|++.+.+.+++.+ +++.|+++|| +|||+++.++.++.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-----SNARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-----cCCchhHHHHHHHHHHH
Confidence 344444444432 3334444 44566999999999999999998887 7888999999 99999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChH
Q 008417 216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR 295 (566)
Q Consensus 216 ~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr 295 (566)
.+++++ +++++.+++.|++.|++.+...+...+++.+++ ++++|+..+++.+.+..+|.++++.+++++.+.+|||
T Consensus 102 ~~~~~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~---~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 102 NILFGF-SSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY---SRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHH-HhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 999988 899999999999999999988888889999999 6667888899888888999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHhheeeccccccCCCcCC---CCCC-CCCccccchHHHHHHHH--HHhcccchhHHHHHHHHHhh
Q 008417 296 FVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQ---NLPL-GDPSFFESSKQNMFQLW--EAVKQPNVFLPTLFVFLWQA 368 (566)
Q Consensus 296 ~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 368 (566)
+.|++.+++.++ .++..++++|++++....+. +.+. +.....++.+...++.+ ..++++.++...+..++...
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYV 257 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 999998877665 44455567776543211000 0000 00000000001122221 25667777766554444443
Q ss_pred cccchhhhHHHHh-hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC--CcchhhH-HHHHHHHHHHhHHHHhhhccc
Q 008417 369 TPHSDSAMFYFTT-NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV--PLRKIFL-ANTIFGTALGMTQVFLVTGLN 444 (566)
Q Consensus 369 ~~~~~~~~~~~~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 444 (566)
.+.....+.+.+. +++|++..+.+.......++.+++.++.|++.||+ ++|+... ...+...+....+..... .+
T Consensus 258 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~ 336 (434)
T PRK11663 258 VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF-AS 336 (434)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc-cc
Confidence 3333344444444 56899999999999999999999999999999998 3333322 211111111111111111 11
Q ss_pred cccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 445 RKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 445 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
. .......+..++..............+..|++.+|++.|+.+.+.++|.+++|.+.|++.+..|+..
T Consensus 337 ~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 404 (434)
T PRK11663 337 Y-------VMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTG 404 (434)
T ss_pred H-------HHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHH
Confidence 0 0111111111111111111112556788889999999999999999999999999999999887654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-30 Score=258.57 Aligned_cols=354 Identities=16% Similarity=0.078 Sum_probs=248.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
.+..+...+..++.........+.+.+++|.+..+++++.+.+.++..+ +++.|+++|| +|||+++..+.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 17 IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-----IGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCchhHHHHHHHHH
Confidence 3334455566666533333344455677999999999999999988887 6788999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
++.+.+.+ .++++.+++.|++.|++.+...+...+++.|++ ++++|+..+++.+.+..+|..+++.+++.+.+..+
T Consensus 92 ~~~~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (406)
T PRK11551 92 LFSLATAQ-AWDFPSLLVARLLTGVGLGGALPNLIALTSEAV---GPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA 167 (406)
T ss_pred HHHHHHHH-hccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 98888888 899999999999999999999889999999999 66778888888888889999999999988888899
Q ss_pred hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 294 VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 294 wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
||+.|++.+++.++ .++..+++||++++...+++++ ..+...+..++..+.+..+......++.......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK---------QRAPVLRALFGEGRATATLLLWISYFFTLIVLYF 238 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch---------hhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999998876665 4445556788654322111100 0111111111111112222222222222122222
Q ss_pred hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
...+.+.+.++.|+++.+.+.......++.+++.++.+++.||+++++.+..+.+...+..+.+.... +.
T Consensus 239 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~------- 308 (406)
T PRK11551 239 LLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP---SF------- 308 (406)
T ss_pred HHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC---cH-------
Confidence 23344555667899999999999999999999999999999999999887775555544433322211 11
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
+......++.++..........++..+.+|+++|+++.|+.+.+..++..++|.++|.+.+..+
T Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~ 372 (406)
T PRK11551 309 AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR 372 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC
Confidence 1111112222222222222333788899999999999999999999999999999999998643
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-29 Score=254.12 Aligned_cols=340 Identities=14% Similarity=0.141 Sum_probs=250.0
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA 229 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (566)
....+.+++++++|++..++|++.+++.+++.+ ++++|+++|| +|||+.+.++.++.+++.+.+++ +++++.+
T Consensus 21 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-----~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~ 94 (377)
T TIGR00890 21 TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-----FGPRAVAMLGGILYGLGFTFYAI-ADSLAAL 94 (377)
T ss_pred hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----cCccchhHHhHHHHHHHHHHHHH-HHHHHHH
Confidence 345566778888999999999999999999888 7889999999 99999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-H
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-T 308 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~ 308 (566)
++.|++.|++.+.........+.++++ ++|+.+.++...+..+|.++++.+.+.+.+..|||+.|++.+++.++ .
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 170 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFP----DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVI 170 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcC----cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999999999999877777777777773 35788888888888888888777777777788999999999988877 4
Q ss_pred HHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCCh
Q 008417 309 SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTP 388 (566)
Q Consensus 309 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 388 (566)
++..++++++++++.+++++ .++..++.++.++++.++......++..........+...+.+++|.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (377)
T TIGR00890 171 VLGAFLIGYPPGQLIKTNIE-----------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSD 239 (377)
T ss_pred HHHHHheecCchhccccCcc-----------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCH
Confidence 44445555544321111100 0011123456677877766655444443333333333444557788888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhh
Q 008417 389 EFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQA 468 (566)
Q Consensus 389 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 468 (566)
.+.+.+.....++.+++.++.+++.||+++|+.+..+.++..++.+.+.+..... . ........+.+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~g~~~g~ 311 (377)
T TIGR00890 240 GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN-D-------VLFLATVALVFFTWGG 311 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch-h-------HHHHHHHHHHHHHhcc
Confidence 8899999999999999999999999999999988887777766655443322110 0 1111111222222222
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 469 SFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.......+..|..|+++++++.|+.+....+|..++|.+.|.+.+..|+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 362 (377)
T TIGR00890 312 TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEY 362 (377)
T ss_pred chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 222223778899999999999999999999999999999999999887654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-30 Score=266.13 Aligned_cols=387 Identities=16% Similarity=0.091 Sum_probs=256.2
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHH
Q 008417 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSW 216 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~ 216 (566)
+++.++..++.......+.+.+.+++|++..+.+++.+++.++.++ .+++|+++|| +|||+.++++.++.+++.
T Consensus 172 ~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-----~GRR~~lii~lil~~i~~ 246 (742)
T TIGR01299 172 LGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-----LGRKQCLLICLSVNGFFA 246 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHH
Confidence 3334444555433344445566677999999999999999999888 6788999999 999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc-----
Q 008417 217 SLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA----- 291 (566)
Q Consensus 217 ~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~----- 291 (566)
+++++ +++++.++++|++.|++.+...+...+++.|++ +++.|+..+++...+..+|.++++.++..+...
T Consensus 247 ll~af-a~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~---p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~ 322 (742)
T TIGR01299 247 FFSSF-VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL---AQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSF 322 (742)
T ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 98888 899999999999999999999999999999999 667788888888888889999999887766533
Q ss_pred --------cChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCC------------CCCCC----c-c----------
Q 008417 292 --------YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNL------------PLGDP----S-F---------- 336 (566)
Q Consensus 292 --------~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~------------~~~~~----~-~---------- 336 (566)
.+||+.+++.++..++.++..+++||+|++...+.+.+ ..+.. . +
T Consensus 323 ~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~ 402 (742)
T TIGR01299 323 QMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQ 402 (742)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhh
Confidence 36899999988877777777888999987622111000 00000 0 0
Q ss_pred ----------cc--------chHH----HHHHHHHHhcccchh---HHHHHHHHHhhcccchhhhHHHHhhcc-------
Q 008417 337 ----------FE--------SSKQ----NMFQLWEAVKQPNVF---LPTLFVFLWQATPHSDSAMFYFTTNEL------- 384 (566)
Q Consensus 337 ----------~~--------~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 384 (566)
.. ..+. .+.++..+++.+... .+.+..+...+.++....+++...+.+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~ 482 (742)
T TIGR01299 403 EDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAA 482 (742)
T ss_pred hhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0000 011233334332222 222223333333333333333211100
Q ss_pred -----------------------------------CC-------------------------------------------
Q 008417 385 -----------------------------------GF------------------------------------------- 386 (566)
Q Consensus 385 -----------------------------------g~------------------------------------------- 386 (566)
|+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 562 (742)
T TIGR01299 483 LTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFE 562 (742)
T ss_pred hhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchh
Confidence 00
Q ss_pred ---------------------C---------hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHH
Q 008417 387 ---------------------T---------PEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ 436 (566)
Q Consensus 387 ---------------------~---------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 436 (566)
+ .....+...+..++.+++.++.+++.||+|||+++.++.++.+++.+++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~ 642 (742)
T TIGR01299 563 EYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFL 642 (742)
T ss_pred hhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 0 0012333456778999999999999999999999988888887776655
Q ss_pred HHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 437 VFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
.+..... ..+...++.+++....+.....+++|.+|++.|++++|+.++...+|.+++|.++|.+.+..
T Consensus 643 ~~~~s~~----------~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~- 711 (742)
T TIGR01299 643 SFGNSES----------AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT- 711 (742)
T ss_pred HHHccHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4332211 11111223333344444444589999999999999999999999999999999999887642
Q ss_pred CCCccchhhHHHHHHHHHHHhhhhhhhccCCCCCCC
Q 008417 517 VTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPD 552 (566)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 552 (566)
. ...+.+++++.+++.++..++|+++++
T Consensus 712 ~--------~~pf~i~a~~lll~~ll~~~LPET~~~ 739 (742)
T TIGR01299 712 K--------AAPILFASAALACGGLLALKLPDTRGQ 739 (742)
T ss_pred h--------HHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 1 112333333333334444456877654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-30 Score=263.40 Aligned_cols=360 Identities=13% Similarity=0.054 Sum_probs=241.4
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHH
Q 008417 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSW 216 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~ 216 (566)
+++.++...+.........+.+.+++|++..+.|++.+.+.+++.+ +++.|+++|| +|||+++.++.++.++..
T Consensus 34 ~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-----~g~r~~l~~~~~~~~~~~ 108 (467)
T PRK09556 34 VFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-----KNTKQFLPFLLILSAICM 108 (467)
T ss_pred HHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-----cCccchHHHHHHHHHHHH
Confidence 3334444444433333444566678999999999999999999988 7889999999 999999988888877766
Q ss_pred HHHHhh----cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc
Q 008417 217 SLMATI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY 292 (566)
Q Consensus 217 ~~~~~~----~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 292 (566)
+.++.. +++++.++++|++.|++.+...+....++.|++ ++++|+.++++...+..+|.++++.+..++.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~---~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~ 185 (467)
T PRK09556 109 LGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT---PRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF 185 (467)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc---CccceeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence 665541 588999999999999999998889999999999 5666777777777777899999998887776543
Q ss_pred ---ChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCC---CC--CCCccccchHHHHHH-HH-HHhcccchhHHHH
Q 008417 293 ---GVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNL---PL--GDPSFFESSKQNMFQ-LW-EAVKQPNVFLPTL 361 (566)
Q Consensus 293 ---gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 361 (566)
+||..|.+.+++.++ .++.+++.++++++....++++ +. ..+...++.+...++ .. ..++++.+|...+
T Consensus 186 ~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (467)
T PRK09556 186 FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCF 265 (467)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHH
Confidence 699999888877776 4444455555443211100000 00 000000000001111 12 2678888887776
Q ss_pred HHHHHhhcccchhhhHHHHh-hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh
Q 008417 362 FVFLWQATPHSDSAMFYFTT-NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV 440 (566)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 440 (566)
..++....+.....+.+.|. +.+|++..+.++......++.+++.++.|+++||+++|+.+.....+..+....+.+ .
T Consensus 266 ~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~ 344 (467)
T PRK09556 266 ANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY-Q 344 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-H
Confidence 66555544434455555444 568999999999998899999999999999999999888766554433332222111 1
Q ss_pred hccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhh-hhhhHhHHHHHHHH
Q 008417 441 TGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNG-GSVLGGLLGAGLTQ 513 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~~~g~l~~ 513 (566)
...+. .......+..+...............+..|++.+|++.|+.+.+.++ |.+++|.+.|.+.+
T Consensus 345 ~~~~~-------~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 345 HATSE-------YMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred hcCcH-------HHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 11111 11111111111111111222225566999999999999999999997 66899999999999
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=252.85 Aligned_cols=383 Identities=13% Similarity=0.060 Sum_probs=261.5
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHH
Q 008417 138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS 215 (566)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~ 215 (566)
+....+...+. ......++.+. ++++.+..+.|++.+...+++.+ +++.|+++|| +|||+.++.+.++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-----~g~~~~l~~~~~~~~~~ 95 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-----YDRKKLILLARGTCGLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-----cCCceEEEehHHHHHHH
Confidence 33334444443 34455556555 45788999999999999999887 7888999999 99999999988877776
Q ss_pred HHHHHh----hcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc
Q 008417 216 WSLMAT----IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA 291 (566)
Q Consensus 216 ~~~~~~----~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 291 (566)
.+.++. ..++++.+++.|++.|++.+...+...+++.|+. +++++++..++......+|.++|+.+++.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~ 172 (417)
T PRK10489 96 FIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALV---GRENLMQAGAITMLTVRLGSVISPALGGLLIAA 172 (417)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc---CHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 655432 1457788899999999999988888888999999 555677778888778899999999999999988
Q ss_pred cChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhccc
Q 008417 292 YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371 (566)
Q Consensus 292 ~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (566)
.||++.|++.++..++..+..+.+|++++++.+++ +..++..+.++..+++|.++...+..++.... .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 240 (417)
T PRK10489 173 GGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPRE-----------HPLRSLLAGFRFLLASPVVGGIALLGGLLTMA-S 240 (417)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccc-----------cchHHHHHHHHHHHcChHHHHHHHHHHHHHHH-H
Confidence 99999999988777776666666776543211100 01122223344456676655544333332221 2
Q ss_pred chhhhHHHHhhc-cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccc
Q 008417 372 SDSAMFYFTTNE-LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGIS 450 (566)
Q Consensus 372 ~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (566)
....+.+.+.++ +|.++...|++.....++.+++.++.+++.||.++++.+..+.++..+..+.+.+... .
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~----- 312 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM---W----- 312 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch---H-----
Confidence 233344445555 8999999999999999999999999999999977777777766665555443322111 0
Q ss_pred cchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHH
Q 008417 451 DEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLI 529 (566)
Q Consensus 451 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~ 529 (566)
+......++.+ .+.....+.. +++.+..|++.||+++|+.+...++|..+|+.+.|.+.+..|... ...
T Consensus 313 --~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~-------~~~ 382 (417)
T PRK10489 313 --ILAVLCLALFG-YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA-------SAS 382 (417)
T ss_pred --HHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-------HHH
Confidence 11111122222 2222233333 788899999999999999999999999999999999999887654 122
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCccchh
Q 008417 530 ILCNLSSLLPLPLIGLLPQDSPDSTSKESE 559 (566)
Q Consensus 530 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 559 (566)
..+++..++..+....+++.++++.+|.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 383 ASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccC
Confidence 223333333444445567766655554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=257.33 Aligned_cols=363 Identities=13% Similarity=0.039 Sum_probs=230.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCC--HH--HHHHH--HHHhhhhhhh-cchhhhcccccCcCCCCCchHhHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLD--PA--ETAVI--SGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL 207 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s--~~--~~g~~--~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~ 207 (566)
.+...+..+..++.........+++.++++.+ +. .++.. .++..+++.+ ++++|+++|| +|||+++.+
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-----~Grr~~l~~ 92 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-----YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccHHHHHH
Confidence 33444555666665444445556777777532 21 12221 3555677777 6788999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcchHHH--------HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHH
Q 008417 208 SGLLGALSWSLMATIVESKYS--------AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGI 279 (566)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 279 (566)
+.++++++.+++++ +++++. ++++|+++|++.+...+...+++.|++ ++++|+...++...+..+|.+
T Consensus 93 ~~~l~~i~~~~~a~-~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~---p~~~Rg~~~~~~~~~~~~G~~ 168 (490)
T PRK10642 93 TIVIMSISTFCIGL-IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS---PDRKRGFMGSWLDFGSIAGFV 168 (490)
T ss_pred HHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC---CCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999998 888764 799999999999999999999999999 556677777877766677777
Q ss_pred HHHHHHhHhh--------cccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHh
Q 008417 280 VSSYFSGSMV--------DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAV 351 (566)
Q Consensus 280 ~g~~~~~~l~--------~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (566)
+|+.+...+. ..+|||++|++.+++.++.+++...+||++++...+++.++..++...+..+..++ +.+
T Consensus 169 lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 245 (490)
T PRK10642 169 LGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFK---EIA 245 (490)
T ss_pred HHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHH---HHH
Confidence 7776654442 25799999999877666555556678887653211110000000000000111122 222
Q ss_pred cc-cchhHHH-HHHHHHhhcccchhhhHHHHh-hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 008417 352 KQ-PNVFLPT-LFVFLWQATPHSDSAMFYFTT-NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF 428 (566)
Q Consensus 352 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~ 428 (566)
++ ++.+... ...++....++....+.+.+. +.+|++....++......++.+++.++.|++.||+|||+.+..+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 325 (490)
T PRK10642 246 TKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVA 325 (490)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 21 1212211 222222232333333444444 56788888888777888889999999999999999999988777654
Q ss_pred HHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHH
Q 008417 429 GTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLG 508 (566)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~ 508 (566)
..+..+.+.......+. .......++.++...........+..+.+|++.|+++.|+...+..+++.++|.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~ 398 (490)
T PRK10642 326 LFVLAIPAFILINSNVI-------GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLA 398 (490)
T ss_pred HHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322221111110 11111112222222222223336777899999999999987666777788999999
Q ss_pred HHHHHhcC
Q 008417 509 AGLTQLFG 516 (566)
Q Consensus 509 g~l~~~~g 516 (566)
+++.+..+
T Consensus 399 g~l~~~~~ 406 (490)
T PRK10642 399 AWLVESTQ 406 (490)
T ss_pred HHHHHHhC
Confidence 99987654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=247.45 Aligned_cols=380 Identities=18% Similarity=0.194 Sum_probs=261.5
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcchhhhccccc--CcCCCCCchHhHHHHHHHHH
Q 008417 138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGLLGAL 214 (566)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~--~~~G~grr~~~~~~~~~~~~ 214 (566)
+..+|+.+++. ++....+|.|++++ |+|.+++|++.. ...+++++|++|+++||+ +.+| +||++++++.++.++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~-~~~~~~~~~l~g~~~Dr~~~~~~g-~rr~~l~~~~~~~~l 80 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSL-VGQAYIFKFLWAPLMDRYTPPLLG-RRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHH-HHHHHHHHHHHHHHHHcccccCCC-cchhHHHHHHHHHHH
Confidence 56788999997 88999999999885 999999999944 444578899999999993 1224 556689999988888
Q ss_pred HHHHHHhhc---chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc
Q 008417 215 SWSLMATIV---ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA 291 (566)
Q Consensus 215 ~~~~~~~~~---~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 291 (566)
+...+++ . .+++.+++..++.+++.+...++.++++.|+. ++++|++..++...+..+|.++++.+++.+.+.
T Consensus 81 ~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~---~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 81 SIAAMAF-CPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVL---HPEERGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred HHHHHHh-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 8887776 4 45777788888888999999999999999999 666778888888888889999999999998875
Q ss_pred -cChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcc
Q 008417 292 -YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP 370 (566)
Q Consensus 292 -~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (566)
.|||..|++.+++.++..+..+++||++.++.+++ + ..++..+++.+.+++|.++..++..+++....
T Consensus 157 ~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~-~----------~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~ 225 (402)
T PRK11902 157 VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPR-S----------LGEAVVGPLRDFFSRRGAWALLLLIVLYKLGD 225 (402)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc-h----------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHH
Confidence 59999999998877765555566777654221110 0 11123345566788888877665555544322
Q ss_pred cchhh-hHHHHhhccCCChhhhhHHHHHH-HHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccc
Q 008417 371 HSDSA-MFYFTTNELGFTPEFLGRVKFVT-SVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFG 448 (566)
Q Consensus 371 ~~~~~-~~~~~~~~~g~~~~~~g~~~~~~-~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (566)
..... ..+++.+++|+++.+.+++.... .++.+++.++.+++.||+++|+.+..+..+..+..+.+.......+..
T Consensus 226 ~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~-- 303 (402)
T PRK11902 226 AFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHL-- 303 (402)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcH--
Confidence 22112 23345566899999999988554 456899999999999999998887766666555443332222111110
Q ss_pred cccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHH
Q 008417 449 ISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATL 528 (566)
Q Consensus 449 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~ 528 (566)
+.......+..+..+.......+.......++..++..++.+.+..++..+++.++|.+.+.+|+.. .
T Consensus 304 ----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~--------~ 371 (402)
T PRK11902 304 ----WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPG--------F 371 (402)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH--------H
Confidence 1122222222223333333333555666666666777888888888888877889999999998754 3
Q ss_pred HHHHHHHHhhhhhhhccCCCC
Q 008417 529 IILCNLSSLLPLPLIGLLPQD 549 (566)
Q Consensus 529 ~~~~~~~~~i~~~~~~~~~~~ 549 (566)
+.+.+++.++++++.+..+++
T Consensus 372 f~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 372 YLMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=247.97 Aligned_cols=347 Identities=12% Similarity=0.082 Sum_probs=242.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
.+.+....+..++.........+.+++++|.+..+.|++.+.+.+++.+ ++++|+++|| +|||+++..+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~ 79 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-----YSLKHILLFLVALCV 79 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-----CccHHHHHHHHHHHH
Confidence 4555666666666633333344456677999999999999999999888 7888999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
++.+++++ +++++.+++.|++.|++.+...+....++.++. ++++|++.++....+..+|..+|+.+++++.+..|
T Consensus 80 ~~~~l~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 155 (382)
T PRK10091 80 IGNAMFTL-SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII---KPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS 155 (382)
T ss_pred HHHHHHHH-hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---ChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc
Confidence 99999998 999999999999999999988888888888988 55667788888888889999999999999998899
Q ss_pred hHHHHHHHHHHHHHH-HHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 294 VRFVFGVTALLPLIT-SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 294 wr~~f~i~~i~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
||+.|++.+++.++. +...+++||.+++. +. +.+ +.++.++++..+......++.......
T Consensus 156 wr~~f~~~~~~~~~~~~~~~~~lp~~~~~~---~~-----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (382)
T PRK10091 156 WRYTFLLIAVFNIAVLASIYFWVPDIRDEA---KG-----------GLR----EQFHFLRSPAPWLIFAATMFGNAGVFA 217 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-----------CHH----HHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 999999998877663 33445566643211 00 111 123456676665554333332221111
Q ss_pred hhhh-HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 373 DSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 373 ~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
...+ .+++.+..|+++.+.+++.....++.+++.++.+++.||+++++.+..+..+..++.+.+........
T Consensus 218 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------- 290 (382)
T PRK10091 218 WFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKT------- 290 (382)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHH-------
Confidence 1222 33444557999999999999999999999999999999999999888877776666544332222110
Q ss_pred chhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh-cCCCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL-FGVTK 519 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~-~g~~~ 519 (566)
.......+..........+.. ....+..+++..+.+ ..+....+|.++||.++|.+.+. .++..
T Consensus 291 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~ 356 (382)
T PRK10091 291 --ASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNY 356 (382)
T ss_pred --HHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcch
Confidence 000111111111112222333 333444444555544 34677899999999999999996 45543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=251.21 Aligned_cols=362 Identities=12% Similarity=0.050 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
...+++.++.+.+.........+.+++++|++..++|++.+++.+++++ +++.|+++|| +|||+++..+.++..
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-----IGARRWIAGIMVLWG 84 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hChHHHHHHHHHHHH
Confidence 4445556666666544444455678888999999999999999999888 7888999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc---
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD--- 290 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~--- 290 (566)
++.+++++ +++++.+++.|++.|++.+...+....++.|++ ++++|+...++...+..+|.++++.+++++.+
T Consensus 85 ~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~---~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 85 IASTATMF-ATGPESLYLLRILVGIAEAGFLPGILLYLTFWF---PAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHHHHHH-hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999998 999999999999999999998888888999999 66678888888888889999999999998863
Q ss_pred ---ccChHHHHHHHHHHHHH-HHHhheeeccccccCC---CcCCCC-------CC---C-CCccccchHHHHHHHHHHhc
Q 008417 291 ---AYGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGP---SRRQNL-------PL---G-DPSFFESSKQNMFQLWEAVK 352 (566)
Q Consensus 291 ---~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~---~~~~~~-------~~---~-~~~~~~~~~~~~~~~~~~~~ 352 (566)
..|||+.|++.++..++ .++.++++||++++.. +++++. +. . .++..++.+...+..++.++
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF 240 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc
Confidence 46999999999888776 5556677888775321 100000 00 0 00000000011112233344
Q ss_pred ccchhHHHHHHHHHhhcccchhhhHHHHhhcc--CCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH-HHHHHH
Q 008417 353 QPNVFLPTLFVFLWQATPHSDSAMFYFTTNEL--GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFL-ANTIFG 429 (566)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~-~~~~~~ 429 (566)
++.++...+..++....+.....+.+.+.+++ |+++.+.+.......++.+++.++.+++.||+++|+... ...++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFA 320 (412)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHH
Confidence 56666555544444444444455555566654 677888898899999999999999999999999777533 333333
Q ss_pred HHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHH
Q 008417 430 TALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLG 508 (566)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~ 508 (566)
.+. +.+... ... . ........+. ..+.....+.. ....+..|++.+++++|+.+...++|++++|.+.
T Consensus 321 ~~~-~~~~~~-~~~-~-------~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~ 389 (412)
T TIGR02332 321 AAG-WLLASA-TDH-N-------LIQLLGIIMA-SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLI 389 (412)
T ss_pred HHH-HHHHHh-cCC-H-------HHHHHHHHHH-HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 222 211111 111 0 0111000110 11111112222 3445678899999999999999999999999999
Q ss_pred HHHHHhcC
Q 008417 509 AGLTQLFG 516 (566)
Q Consensus 509 g~l~~~~g 516 (566)
|.+.+..|
T Consensus 390 g~i~~~~g 397 (412)
T TIGR02332 390 GILKDATG 397 (412)
T ss_pred ccccccCC
Confidence 99999875
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=248.01 Aligned_cols=345 Identities=13% Similarity=0.046 Sum_probs=235.1
Q ss_pred chHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHH
Q 008417 134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL 211 (566)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~ 211 (566)
.+..++...+...+. ++..+.++.++++++|.|..++|++.+++.+++.+ +++.|+++|| +|||++++.+.++
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-----~g~r~~l~~~~~~ 90 (399)
T PRK05122 16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-----LGPKKAVVFGLCG 90 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-----cCCcchHHHHHHH
Confidence 355666666666665 66777888888888999999999999999999888 8999999999 9999999999988
Q ss_pred HHHHHHHHHhh--c-----chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHH
Q 008417 212 GALSWSLMATI--V-----ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF 284 (566)
Q Consensus 212 ~~~~~~~~~~~--~-----~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 284 (566)
.+++.+.+.+. . .+++.+++.|++.|++.+...+....++.|++ ++++|+++.++......+|.++|+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~g~~l 167 (399)
T PRK05122 91 CALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV---GALHTGRVISWNGIATYGALAIGAPL 167 (399)
T ss_pred HHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc---ChhhhccchhhhhhhhhHHHHHHHHH
Confidence 87776655431 1 24667899999999999999888888899999 55566777777777778999999999
Q ss_pred HhHhhcccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHH
Q 008417 285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF 364 (566)
Q Consensus 285 ~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (566)
++.+.+.+||++.+++.+++.++..+.....|++++ .++++ .+.++..++ .+.......
T Consensus 168 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~---------~~~~~~~~~ 226 (399)
T PRK05122 168 GVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP---VKGER---------LPFRRVLGR---------VWPYGMGLA 226 (399)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCccc---------hhHHHHHHH---------HHHHHHHHH
Confidence 999999999999998877665543333322222211 10000 011111111 111111111
Q ss_pred HHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccc
Q 008417 365 LWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLN 444 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (566)
++.+.......+...+..+.|+ ...+.......++.+++.++.+++.||+++|+.+..+..+..++.+.+.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--- 301 (399)
T PRK05122 227 LASIGFGTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS--- 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 1122122222333333344555 34556667778888999999999999999999887777766665544433211
Q ss_pred cccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 445 RKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 445 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
. +......++.++.....+........+..|++++|+++|+++...++|..+++.+.|.+.+..|+..
T Consensus 302 ~-------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 369 (399)
T PRK05122 302 P-------WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPS 369 (399)
T ss_pred H-------HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 1 1111112222222222222222667788999999999999999999999999999999999877543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=245.00 Aligned_cols=325 Identities=13% Similarity=0.082 Sum_probs=236.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 008417 157 FYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILL 235 (566)
Q Consensus 157 ~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 235 (566)
+.+.+++|++.+++|+..+.+.++..+ ++++|+++|| +|||+.++.+.++.+++.+++.+ +++++.++++|++
T Consensus 44 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l 117 (394)
T PRK10213 44 TPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-----TDRRYVVILFAVLLTLSCLLVSF-ANSFSLLLIGRAC 117 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCcHHHHHHHHHHHHHHHHHHHH-HChHHHHHHHHHH
Confidence 345567999999999999888887777 7888999999 99999999999999999999888 8999999999999
Q ss_pred HHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHH-hhee
Q 008417 236 GSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG-VAVL 314 (566)
Q Consensus 236 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~-~~~~ 314 (566)
.|++.+...+...+++.|++ ++++|+...++.....++|.++||.+++.+.+.+|||+.|++.+++.++..+ ....
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~---~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~ 194 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLV---PPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKS 194 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHc---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6667888899998888999999999999999999999999998877666333 3333
Q ss_pred eccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh-HHHHhhccCCChhhhhH
Q 008417 315 VKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTNELGFTPEFLGR 393 (566)
Q Consensus 315 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~ 393 (566)
+||++++++ +. .++.++.+++|.++...+..++..........+ .+++.+++|+++...+.
T Consensus 195 ~p~~~~~~~---------------~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~ 256 (394)
T PRK10213 195 LPSLPGEPS---------------HQ---KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTL 256 (394)
T ss_pred CCCCCcccc---------------cc---hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH
Confidence 555432110 01 112345678888777654433333222222233 35566778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHH
Q 008417 394 VKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPV 473 (566)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 473 (566)
+.....++.+++.++.+++.||.+ ++.+..+..+..+..+.+...... . +......++.++.........
T Consensus 257 ~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~--~-------~~~~~~~~l~G~~~~~~~~~~ 326 (394)
T PRK10213 257 VLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSD--K-------IVATGVAIIWGLTFALVPVGW 326 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhh--H-------HHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999954 444444333333332222221111 1 112222233332333333333
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 474 LVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 474 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.+++.+..| ++.++..++.....++|..+|+.++|.+.+..|+..
T Consensus 327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~ 371 (394)
T PRK10213 327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTS 371 (394)
T ss_pred HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 367788887 557788888888899999999999999999877654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=256.53 Aligned_cols=366 Identities=13% Similarity=0.095 Sum_probs=261.4
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
++.++...+...+. ......++.+. +++|.+..+.+++.+.+.++..+ .+++|+++|| +|||++++.+.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~r~~~~~~~~~~ 85 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-----VGVRNIFFTAIVLF 85 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hchHHHHHHHHHHH
Confidence 55566666666665 44555566665 55899999999998888888766 7788999999 99999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc
Q 008417 213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY 292 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 292 (566)
.++.+.+.+ +++.+.+++.|+++|++.+...+...+++.|++ ++++|+..+++.....++|..+||.+++.+.+..
T Consensus 86 ~~~~~~~~~-~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~ 161 (471)
T PRK10504 86 TLGSLFCAL-SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIV---PREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA 161 (471)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Confidence 988888887 889999999999999999999888999999999 6667788888888888999999999999999999
Q ss_pred ChHHHHHHHHHHHHHH-HHhheeeccccccCCCcCCC----------------CCCCCCcccc-----------------
Q 008417 293 GVRFVFGVTALLPLIT-SGVAVLVKEQQVLGPSRRQN----------------LPLGDPSFFE----------------- 338 (566)
Q Consensus 293 gwr~~f~i~~i~~~~~-~~~~~~~~e~~~~~~~~~~~----------------~~~~~~~~~~----------------- 338 (566)
|||+.|++...+..+. ++.....|+.+....+.+.. .+.+......
T Consensus 162 gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (471)
T PRK10504 162 SWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLY 241 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999988776663 33333444432211100000 0000000000
Q ss_pred ----c-hHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhh-ccCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 008417 339 ----S-SKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTN-ELGFTPEFLGRVKFVTSVASLLGVGLYNGF 412 (566)
Q Consensus 339 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 412 (566)
. .++... -.++++||.++..+...++..........+.++|.+ ..|.++...+++.....++.+++.++.+++
T Consensus 242 ~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 242 LLHARNNNRALF-SLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV 320 (471)
T ss_pred HHHHhcCCCCcc-CHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 124678888777766666655544443444444444 589999999999998899999999999999
Q ss_pred hhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHH
Q 008417 413 LKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFAT 492 (566)
Q Consensus 413 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 492 (566)
.||+++|+.+..+..+..+..+.+.+.....+. +......++.++..+..+.+...+..+..|++.++.++|+
T Consensus 321 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 393 (471)
T PRK10504 321 VNRFGYRRVLVATTLGLALVSLLFMLVALLGWY-------YLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSL 393 (471)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHhccccccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHH
Confidence 999999999888877776665554432211100 1111111222223333344444777888999999999999
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 493 LMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 493 ~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
.++..++|..+|+.++|.+.+..|+.
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999988874
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=244.55 Aligned_cols=324 Identities=14% Similarity=0.049 Sum_probs=222.5
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHH
Q 008417 153 LAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAAL 231 (566)
Q Consensus 153 ~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 231 (566)
.+..+.+++++|+|..+.|++.+.+.+++.+ +++.|+++|| +|||++++.+......+.+.... .++++.+++
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 84 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-----AFKRWFLFGSLATFAAAAGRLLD-PFNYEWLLA 84 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHHHHHH-hccHHHHHH
Confidence 3344566677999999999999999999888 7888999999 89998876665555454433332 478999999
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-HHH
Q 008417 232 SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-TSG 310 (566)
Q Consensus 232 ~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~~~ 310 (566)
+|++.|++.+.. ......++|++ ++++|+++.++...+..+|.++++++++++.+.+|||+.|++.+++.++ .++
T Consensus 85 ~R~l~G~g~~~~-~~~~~~~~~~~---~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 85 CQLLAALGQPFL-LNAFAPAASQI---REERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHhHhHHH-HHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 999999999864 45556678998 5678899999999999999999999999999999999999998888777 555
Q ss_pred hheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhh
Q 008417 311 VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEF 390 (566)
Q Consensus 311 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 390 (566)
..+++||+++++.+.. +.++..+++++.+++|.+|...+..++....+.....+.+.+.++.|++..
T Consensus 161 ~~~~lp~~p~~~~~~~------------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~- 227 (368)
T TIGR00903 161 VLAALPALPFQAAEGF------------GFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI- 227 (368)
T ss_pred HHHHcCCCCCCCCCCc------------chHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-
Confidence 6677888765321100 011123456678899998888776666655555556666666677787764
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCc---chhhHH-HHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhh
Q 008417 391 LGRVKFVTSVASLLGVGLYNGFLKNVPL---RKIFLA-NTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLS 466 (566)
Q Consensus 391 ~g~~~~~~~~~~~~~~~~~~~l~~r~g~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 466 (566)
.+....+..+.+.++. +++.||..| |+.... ..++.++....+ ....+. ........+.+++.
T Consensus 228 ~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~---~~~~~~-------~~~~~~~~l~~~~~ 294 (368)
T TIGR00903 228 AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFLAL---AFELNR-------LALFAFIGIAGLLM 294 (368)
T ss_pred HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHcccc-------HHHHHHHHHHHHhh
Confidence 5555555555555553 566666643 333222 222222221111 111111 11111111122222
Q ss_pred hhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 467 QASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
...+....++.+|.+|++.||++.|+.+...++++.++|.+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 295 LPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred hhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 2222223478899999999999999999999999999999988777
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=246.22 Aligned_cols=350 Identities=16% Similarity=0.158 Sum_probs=254.5
Q ss_pred HHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHH
Q 008417 141 VYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSL 218 (566)
Q Consensus 141 ~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~ 218 (566)
..+...+. ......++.+..+ ++.+..+++++.+++.++..+ ++++|+++|| +|||+.++.+.++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-----~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADR-----YDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-----hchhHHHHHHHHHHHHHHHH
Confidence 33444443 3445666666654 799999999999999888877 7889999999 99999999999988888877
Q ss_pred HHhhcc-----hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 219 MATIVE-----SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 219 ~~~~~~-----~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
+.+ .. +++.+++.|++.|++.+...+...+++.|++ ++++|++.+++......+|.++||.+++.+.+..|
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 156 (365)
T TIGR00900 81 LPF-VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLV---PEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG 156 (365)
T ss_pred HHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 776 55 8999999999999999999999999999999 55578888888888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccch
Q 008417 294 VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSD 373 (566)
Q Consensus 294 wr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (566)
||+.|++.++..++..+..+.+++++++++++++. ++ +..++..+..+..+++|.++......+++.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (365)
T TIGR00900 157 IKWAIWVDAVGFAISALLIVSVRIPELAASEIQAL----SN---AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPA 229 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCcccccc----ch---hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999998877666444333333222111111100 00 011223334555677887776665555544433332
Q ss_pred h-hhHHHHhh-ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 374 S-AMFYFTTN-ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 374 ~-~~~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
. .+.+++.+ .+|.++.+.+.+.....++.+++.++.+++.||.++++.+..+..+.++..+.+.+... +.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------ 301 (365)
T TIGR00900 230 IVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP--NF------ 301 (365)
T ss_pred HHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch--hH------
Confidence 2 34444444 47999999999999999999999999999999999998887776655555444332221 11
Q ss_pred chhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
+......++.++..+.......+++.+..|+++|+++.|+.+...+++..+++.++|.+.|.+|
T Consensus 302 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 302 -PLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1122222333333333333334889999999999999999999999999999999999998764
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=249.13 Aligned_cols=364 Identities=13% Similarity=0.117 Sum_probs=250.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
+..+++.++..++.........+.+++++|++..+++++.+++.++..+ +++.|.++|| +|||++++++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-----~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-----YGRRLPMVTSIVLFS 88 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHH
Confidence 4445566667777644445555567788999999999999999888887 7889999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
++.+++++ .++++.+++.|++.|++.+...+...+++.|++ ++++|+...++...+..+|.++++.+++.+.+..+
T Consensus 89 ~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 89 AGTLACGF-APGYITMFIARLVIGIGMGGEYGSSAAYVIESW---PKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHH-hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999888 899999999999999999999999999999999 55677888888888889999999999999887766
Q ss_pred --hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCC--------Cc-cccchHHHHHHHHHHhcccc--hhHHH
Q 008417 294 --VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGD--------PS-FFESSKQNMFQLWEAVKQPN--VFLPT 360 (566)
Q Consensus 294 --wr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~--~~~~~ 360 (566)
||+.|++.++..++.++....+||++.++++++++++..+ .. .....++.....++..+++. +....
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLV 244 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHH
Confidence 9999998776666655556667776543211111100000 00 00000000011111111111 11111
Q ss_pred HHHHHHhhcccchhhh-HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHh
Q 008417 361 LFVFLWQATPHSDSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFL 439 (566)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 439 (566)
....+..........+ ..++.+++|++..+.+.+.....++.+++.++.+++.||+++|+.+..+.++..+..+.....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 324 (405)
T TIGR00891 245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI 324 (405)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh
Confidence 1111212211122222 334445689999999999999999999999999999999999998877766543332222111
Q ss_pred hhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 440 VTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 440 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
..+. +.......+.+.+..........++.+..|++.+|+++|+.+.+.+++..++|.+.|.+.+..|
T Consensus 325 --~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 325 --GANV-------AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred --CCch-------HHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1110 1111111222223333333333788899999999999999999999999999999999999988
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=245.14 Aligned_cols=326 Identities=13% Similarity=0.073 Sum_probs=236.1
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHH
Q 008417 153 LAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAAL 231 (566)
Q Consensus 153 ~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 231 (566)
.+..+.+++++|+|..+.|++.+.+.+++.+ +++.|+++|| +|||+++..+..+.+++.+.+++ +++++.+++
T Consensus 29 ~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-----~G~r~~l~~~~~l~~~~~~~~~~-a~~~~~ll~ 102 (393)
T PRK09705 29 GPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-----VSERRSVAISLLLIAVGALMREL-YPQSALLLS 102 (393)
T ss_pred chhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----hCchHHHHHHHHHHHHHHHHHHH-CcchHHHHH
Confidence 3445566678999999999999999999888 7888999999 99999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc-ChHHHHHHHHHHHHHHHH
Q 008417 232 SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLPLITSG 310 (566)
Q Consensus 232 ~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gwr~~f~i~~i~~~~~~~ 310 (566)
.|+++|++.+...+....++.+++ + ++|+.+++....+..+|..+|+.+++++.++. +||+.+.+.++..++.++
T Consensus 103 ~r~l~Gig~~~~~~~~~~~~~~~~---~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~ 178 (393)
T PRK09705 103 SALLGGVGIGIIQAVMPSVIKRRF---Q-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF 178 (393)
T ss_pred HHHHHHhHHHHHhhhhhHHHHHHc---c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998888888888887 3 45788888888888899999999999988775 899998776665554333
Q ss_pred hheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhh
Q 008417 311 VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEF 390 (566)
Q Consensus 311 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 390 (566)
..+...++++..++ + + +. ...+.+++++.+...+..++....+.....+.+.+.++.|++..+
T Consensus 179 ~~~~~~~~~~~~~~-~-~----------~~-----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ 241 (393)
T PRK09705 179 AWWWQSAREVASSH-K-T----------TT-----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY 241 (393)
T ss_pred HHHHHhcCCCcccc-C-C----------Cc-----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 33322221111000 0 0 00 012234555655555444444444434444555555668999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhh
Q 008417 391 LGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASF 470 (566)
Q Consensus 391 ~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 470 (566)
.|....+..++.+++.++.+++.||+++|+.+..+..+..++.+.+..... ... .... .+.+ .+....
T Consensus 242 ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-------~~~~---~l~g-~g~g~~ 309 (393)
T PRK09705 242 SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL-QLP-------VLWA---MVCG-LGLGGA 309 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-hHH-------HHHH---HHHH-Hhccch
Confidence 999999999999999999999999999998888877666555443322111 100 0000 1111 112222
Q ss_pred HHHH-HHHHhhC-CCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 471 MPVL-VLAARLC-PEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 471 ~~~~-~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
.|.. ....+.. |++.+|+.+|+.+.+.+++..++|.+.|++.|..|.
T Consensus 310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~ 358 (393)
T PRK09705 310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN 358 (393)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2323 4555655 457899999999999999999999999999999873
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=251.92 Aligned_cols=361 Identities=14% Similarity=0.033 Sum_probs=260.0
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
+..+++.+|...+. ..+..++|.. .+++|.+..+.+++.+.+.+++.+ .+++|+++|| +|||++++.+.+++
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-----~Grk~~l~~~~~~~ 81 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-----IGFKRLLMLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHH
Confidence 44566666777776 4556665655 567999999999999999888876 7889999999 99999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc
Q 008417 213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY 292 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 292 (566)
.++.+.+++ +++++.++++|+++|+|.+...+.....+.+.++ ++++|++.+++......+|..+||.+++++.+++
T Consensus 82 ~~~~~~~~~-a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~--~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 82 GLASLAAAF-SPTASWLIATRALLAIGAAMIVPATLAGIRATFT--EEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999998 9999999999999999999988877777777652 3467888889998888999999999999999999
Q ss_pred ChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCC-------------------CccccchH-----------
Q 008417 293 GVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGD-------------------PSFFESSK----------- 341 (566)
Q Consensus 293 gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~-------------------~~~~~~~~----------- 341 (566)
||||.|++...+.++ .++..+++|+++..+.+ +.+... ........
T Consensus 159 gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~---~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (495)
T PRK14995 159 YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQ---PLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL 235 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC---CCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 999999998877766 44455566765432111 111000 00000000
Q ss_pred ---HHHHHH--------HHHhcccchhHHHHHHHHHhhcccchhhhHHHH-hhccCCChhhhhHHHHHHHHHHHHHHHHH
Q 008417 342 ---QNMFQL--------WEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFT-TNELGFTPEFLGRVKFVTSVASLLGVGLY 409 (566)
Q Consensus 342 ---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 409 (566)
....+. ++.+++|.+....+..++..........+.+.+ ...+|+++.++|+......++..++.++.
T Consensus 236 l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~ 315 (495)
T PRK14995 236 LGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA 315 (495)
T ss_pred HHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000010 256777776655554444443332323333333 44579999999999999999999999999
Q ss_pred HHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHH
Q 008417 410 NGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATL 489 (566)
Q Consensus 410 ~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 489 (566)
|++.||+|+|+.+..+.++..++.+.+.......+. +......++.++..+....+......+..|+++++.+
T Consensus 316 g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~ 388 (495)
T PRK14995 316 GILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQ-------WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAA 388 (495)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchH
Confidence 999999999888877777766655444332221111 1112223333334444444555777888999999999
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 490 FATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 490 ~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
.++.+...++|+.+|+.+.|.+.+.
T Consensus 389 ~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 389 GAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=249.07 Aligned_cols=349 Identities=13% Similarity=0.008 Sum_probs=228.6
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh---cchHHHH
Q 008417 154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI---VESKYSA 229 (566)
Q Consensus 154 ~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~l 229 (566)
...+++.++ |++..+.+++.+.+.+++.+ ++++|+++|| +|||++++++.++.+++.+.+++. ..+++.+
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-----~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 123 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 123 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHH
Confidence 344577777 99999999999999999888 7899999999 999999999999999888888762 1367788
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHH-HHHHHHHhHhhcccChHHHHHHHHHHHHH-
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGG-IVSSYFSGSMVDAYGVRFVFGVTALLPLI- 307 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~gwr~~f~i~~i~~~~- 307 (566)
++.|++.|++.+...+.....+.+++ ++++|+...++.+.+..+|. +++++++..+....|||+.|++.+++.++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~ 200 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWW---SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILV 200 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhC---ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999988777778888988 56678888888887777776 45565544443445999999998887776
Q ss_pred HHHhheeeccccccCCCcCCC---CCC-CCCccccchHHHHHHH--HHHhcccchhHHHHHHHHHhhcccchhhhHHHHh
Q 008417 308 TSGVAVLVKEQQVLGPSRRQN---LPL-GDPSFFESSKQNMFQL--WEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTT 381 (566)
Q Consensus 308 ~~~~~~~~~e~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (566)
.++..+++||++++...++++ .+. +..+..+..+...++. ...++++.+|...+..++..........+.+.+.
T Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l 280 (452)
T PRK11273 201 ALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL 280 (452)
T ss_pred HHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778765432111000 000 0000000000111221 2356788877766555554443333344555555
Q ss_pred h-ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCC--cchhhH-HHHHHHHHHHhHHHHhhhccccccccccchhhhh
Q 008417 382 N-ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVP--LRKIFL-ANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIG 457 (566)
Q Consensus 382 ~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 457 (566)
+ +.|++..+.+....+..++.+++.++.|++.||++ +|+... ....+..++.+.+.+... .+. .....
T Consensus 281 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~-~~~-------~~~~~ 352 (452)
T PRK11273 281 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA-GNP-------TVDMA 352 (452)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc-cCh-------HHHHH
Confidence 4 47899999998888888999999999999999984 343222 222222222222211111 110 00111
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhh-HhHHHHHHHHhcCCCC
Q 008417 458 DSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVL-GGLLGAGLTQLFGVTK 519 (566)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-~~~~~g~l~~~~g~~~ 519 (566)
.....+............+..+..|++.+|++.|+.+...++|+.+ +|.+.|.+.+.+|+..
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~ 415 (452)
T PRK11273 353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 415 (452)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchH
Confidence 1111111111111112245678999999999999999999998765 7999999999988654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=241.74 Aligned_cols=340 Identities=12% Similarity=-0.009 Sum_probs=240.8
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHH
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY 227 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (566)
....+.++. +.+++|.+..+.++..+.+.+++.+ +++.|+++|| +|||++++++.++..++.+.+.. +++++
T Consensus 30 ~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~-~~~~~ 102 (406)
T PRK15402 30 DMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-----IGRRPVMLAGVAFFILTCLAILL-AQSIE 102 (406)
T ss_pred hhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChHHHHHHHHHHHHHHHHHHH-HccHH
Confidence 334444554 5567999999999999999998888 6788999999 99999999999999999888888 88999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH
Q 008417 228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 228 ~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~ 307 (566)
.+++.|++.|++.+...+...+++.|.+ +++++.+..++......+|..+||.+++.+.+..+||+.|++.+++.++
T Consensus 103 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~ 179 (406)
T PRK15402 103 QFTLLRFLQGIGLCFIGAVGYAAIQESF---EEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAAL 179 (406)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHh---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHH
Confidence 9999999999999988888888999999 4555666677777666788999999999999889999999998888777
Q ss_pred HH-HhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh-HHHHhhccC
Q 008417 308 TS-GVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTNELG 385 (566)
Q Consensus 308 ~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g 385 (566)
.. ...+.+||++++..++ .+.++..++....+++|.++...+..++..........+ ..++.+++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g 247 (406)
T PRK15402 180 SFFGLWRAMPETAGRVGEK------------LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQ 247 (406)
T ss_pred HHHHHHHhCCCCCcccccc------------ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence 43 3444566654321110 012233445566788888777665544433322222222 333445689
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHh
Q 008417 386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVL 465 (566)
Q Consensus 386 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 465 (566)
+++.+.+.......++.+++.++.+++.||+++|+.+.++.++..++.+.+......... . .+......++.++.
T Consensus 248 ~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~-~~~~~~~~~~~g~g 322 (406)
T PRK15402 248 LSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSH----A-YLWLTAGLSLYAFG 322 (406)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccc----c-HHHHHHHHHHHHHH
Confidence 999999988887788899999999999999999998888777666555544332211100 0 01111111222222
Q ss_pred hhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 466 SQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
.+....+..... ...+++++|++.++.+....++..+|+.+.+.+.+..+
T Consensus 323 ~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 323 IGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 222222222333 33445899999999999999999999999999887655
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-28 Score=240.09 Aligned_cols=345 Identities=15% Similarity=0.118 Sum_probs=233.3
Q ss_pred HHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhH-HHHHHHHHHHH
Q 008417 141 VYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV-LSGLLGALSWS 217 (566)
Q Consensus 141 ~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~-~~~~~~~~~~~ 217 (566)
.++..++. +...+.++.++++++|.+..++|++.+.+.+...+ +|++|.++|| +|||+.++ .+.++..++.+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-----~g~r~~~~~~~~~~~~~~~~ 79 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-----QGDRKGLILFCCLLAALACL 79 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHHH
Confidence 34555554 56678888899888999999999999988665554 8999999999 88877655 45566666667
Q ss_pred HHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHH
Q 008417 218 LMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFV 297 (566)
Q Consensus 218 ~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~ 297 (566)
++++ +++++.+++.|++.|.+.+...+...++..|+.+++.+ .+....+....+.++|.++|+.+++.+.+.+|||+.
T Consensus 80 ~~~~-~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~ 157 (375)
T TIGR00899 80 LFAW-NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGR-EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM 157 (375)
T ss_pred HHHh-cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence 7777 88999999999999888877777777888888743222 222235666666789999999999999999999999
Q ss_pred HHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhh-
Q 008417 298 FGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSA- 375 (566)
Q Consensus 298 f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 375 (566)
|++.+++.++ .++.++++||++++..+++ . + .+..+.++++..+......++..........
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYPRGAPGAL------------T-R---LEVRGLLASRDTRLLFVACTLMWGCNILYIIN 221 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCccccc------------C-c---chhhhhhcCcchHHHHHHHHHHHHHHHHHHhh
Confidence 9999887776 4444555777654321110 0 0 0112245566555444333222221111122
Q ss_pred hHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhh
Q 008417 376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFA 455 (566)
Q Consensus 376 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (566)
+..++.+++|.++.+.+.+.....+..+++.++.+++.||+++|+.+.++.++..+..+.+...... +..
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 291 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSL----------WAL 291 (375)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 2334446689999999988877777788888999999999999998877665544433322221111 111
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 456 IGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 456 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.....+.++..+........+..+..|+ +++++.++.+...++|..+++.+.|.+.+..|+..
T Consensus 292 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~ 354 (375)
T TIGR00899 292 LMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHA 354 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 1112222222222222223677787775 56799999999999999999999999999887654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=250.87 Aligned_cols=334 Identities=13% Similarity=0.064 Sum_probs=223.6
Q ss_pred CCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhc------------chHHHHH
Q 008417 164 HLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV------------ESKYSAA 230 (566)
Q Consensus 164 g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~ 230 (566)
+.+..+.+++.+++.++.++ ++++|+++|| +|||++++++.++..++.+.+++ + ..++.++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-----~Grr~~~~~~~~l~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNR-----FGRRDSLKIAAVLFFISALGSAW-PEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHh-hccccccccccchhHHHHHH
Confidence 88999999999999999988 6788999999 99999999999999888777764 2 2256778
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh--------cccChHHHHHHHH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV--------DAYGVRFVFGVTA 302 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~gwr~~f~i~~ 302 (566)
++|+++|++.+...+...++++|++ ++++|+...++...+..+|.++++.+++.+. +.+|||+.|++.+
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~---~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~ 201 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIA---PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEA 201 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHH
Confidence 9999999999999999999999999 5667788888888888899888887776553 3579999999988
Q ss_pred HHHHHHHHhheeeccccccCCCcCCCCCCC----CCccccchHHHHHHHHHHhc-----ccchhHHH----HHHH---HH
Q 008417 303 LLPLITSGVAVLVKEQQVLGPSRRQNLPLG----DPSFFESSKQNMFQLWEAVK-----QPNVFLPT----LFVF---LW 366 (566)
Q Consensus 303 i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~---~~ 366 (566)
++.++..+..+++||++++...+++.++.+ +....+..+...++.++.++ .+..+... ...+ .+
T Consensus 202 ~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (479)
T PRK10077 202 IPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVF 281 (479)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHH
Confidence 887776666777898875421111100000 00000001111112222211 11111110 0000 01
Q ss_pred h-h-cccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccc
Q 008417 367 Q-A-TPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLN 444 (566)
Q Consensus 367 ~-~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (566)
. . .......+.+.+.++.|++....++......+..+++.++.+++.||+|+|+.+..+.++..++.+.+........
T Consensus 282 ~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~ 361 (479)
T PRK10077 282 QQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 361 (479)
T ss_pred HHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc
Confidence 0 0 1111122233444567888777777777788889999999999999999999999888888777665543322111
Q ss_pred cccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 445 RKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 445 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
.. .......++........+.|.. .++.|.+|++.|+++.|+.+.+..++..+++.+.+.+.
T Consensus 362 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 362 PG------IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred cc------HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 00 1111111222222223333544 88999999999999999999999999999987776555
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=249.31 Aligned_cols=349 Identities=15% Similarity=0.103 Sum_probs=247.9
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
.....+++.+++|++..+.+++.+++.++..+ ++++|+++|| +|||+.+..+.++..++.+++++ +++++.++
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 86 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-----FGARKTLAVFIVIWGVFTGLQAF-AGAYVSLY 86 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-----cCcceeeHHHHHHHHHHHHHHHH-HcCHHHHH
Confidence 33344567788999999999999999888887 7888999999 99999999999999999999988 88999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-HH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-TS 309 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~~ 309 (566)
+.|++.|++.+...+....++.|++ ++++|+..+++......+|.++++.+++.+.+..+||+.|++.+++.++ .+
T Consensus 87 ~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 87 ILRVLLGAAEAPFFPGIILIVASWF---PASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhC---CHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 5667888888888888999999999999999999999999999888777 44
Q ss_pred HhheeeccccccCCCcCCCCC-C--C----CCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHh-
Q 008417 310 GVAVLVKEQQVLGPSRRQNLP-L--G----DPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTT- 381 (566)
Q Consensus 310 ~~~~~~~e~~~~~~~~~~~~~-~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 381 (566)
+..++.+|+++.+...+++++ . + +....+..+...+..++.+++|+++...+..++..........+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (399)
T TIGR00893 164 LWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLV 243 (399)
T ss_pred HhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445556665442211110000 0 0 0000001111123355667888877776666665554444444444444
Q ss_pred hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHH-HHHHHHHHhHH--HHhhhccccccccccchhhhhH
Q 008417 382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLAN-TIFGTALGMTQ--VFLVTGLNRKFGISDEWFAIGD 458 (566)
Q Consensus 382 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~ 458 (566)
+..|.++.+.+++.....++.+++.++.+++.||+++|+..... .....+..+.. ........ ...+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~- 317 (399)
T TIGR00893 244 QERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV-----NIPYAALA- 317 (399)
T ss_pred HHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHH-
Confidence 45799999999999999999999999999999999988621111 11111111111 11111100 00011111
Q ss_pred HHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 459 SLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 459 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
.......... ..+.. ++..|..|++.|++++|+.+.+.++|..+++.+.|.+.+..|
T Consensus 318 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 318 LVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 1111222222 33444 889999999999999999999999999999999999999876
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=246.74 Aligned_cols=346 Identities=17% Similarity=0.174 Sum_probs=241.8
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhccccc-CcCCCCCchHhHHHHHHHHHHHHHHHhhcch-
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLMATIVES- 225 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~-~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~- 225 (566)
......+++++.+++|+++.++|++.++..+..++ +|+.|+++||+ +|+| +||++++.+.++.+++.+++.. .++
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G-rrr~~i~~~~~~~~i~~~~~~~-~~~~ 93 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG-KFRPWLLIGAIPFSIVLVLLFT-TPDF 93 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC-CcchhHHHhHHHHHHHHHHHHh-CCCC
Confidence 45566678889899999999999999999777777 89999999997 6788 8899999999998888887766 443
Q ss_pred -----HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh-------cccC
Q 008417 226 -----KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV-------DAYG 293 (566)
Q Consensus 226 -----~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-------~~~g 293 (566)
...+++.+++.+++.+...++..++..|+.+ ++++|+++.++...+..+|.++++.+.+.+. +..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g 171 (437)
T TIGR00792 94 SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITL--DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG 171 (437)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 4566778888899999888888899999874 3456777778777777788777776665554 2468
Q ss_pred hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 294 VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 294 wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
||+.+.+.+++.++ .++..+..+|+++..+.++++ + .+. .+.++..+++|.++..++..++.......
T Consensus 172 ~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~----~----~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (437)
T TIGR00792 172 WFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK----K----LSL---KQIFKALFKNDQLLILCLAYLFYNLAFNI 240 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc----C----CCH---HHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877 445556677764321111000 0 012 23344567888877766555554443333
Q ss_pred hhhhHHHHhhc-cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 373 DSAMFYFTTNE-LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 373 ~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
...+..++.+. ++ ++...+.+..+..++.+++.++.+++.||+|+|+.+..+.++..++.+.+.+... +.
T Consensus 241 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~------ 311 (437)
T TIGR00792 241 KNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS--NL------ 311 (437)
T ss_pred HcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch--hH------
Confidence 33333333333 45 5566777777788999999999999999999999988887777666554433221 11
Q ss_pred chhhhhHHHHHHHhhhhhhHHHHHHHHhhCC-------CCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVLVLAARLCP-------EGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+......++.++..+.......+++++..+ ++.+|.++|+.+.+.++|..+++.+.|.+.+..|+..
T Consensus 312 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~ 385 (437)
T TIGR00792 312 -PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVA 385 (437)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 111111222222223333333366666654 5678999999999999999999999999999988854
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-27 Score=236.73 Aligned_cols=343 Identities=13% Similarity=0.089 Sum_probs=231.2
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
.+.+....+...+. +...+.++.++++++|+|..++|++.+.+.+++.+ +|++|+++|| +|||+.++.+.+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-----~g~r~~l~~~~~~~ 91 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-----YGAKRSALQGMLAC 91 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-----hcchHHHHHHHHHH
Confidence 33343444444443 55567778788888999999999999999998888 8999999999 99999999988877
Q ss_pred HHHHHHHH---hh----cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHH
Q 008417 213 ALSWSLMA---TI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS 285 (566)
Q Consensus 213 ~~~~~~~~---~~----~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 285 (566)
.++.+... .. .++++.+++.|+++|++.+...+...+++.|+. ++++|++++++...+..+|.++||.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~a~~~~~~~~~~g~~~g~~~~ 168 (392)
T PRK12382 92 GLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV---GPKHSGKVMSWNGMAMYGALAAGAPLG 168 (392)
T ss_pred HHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CccccchhhhHHHHHHHHHHHHHHHHH
Confidence 66544322 10 257788999999999999988888888899999 556677788877777789999999999
Q ss_pred hHhhcccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHH
Q 008417 286 GSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFL 365 (566)
Q Consensus 286 ~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (566)
+++.+.+|||+.+.+..+..++........||.+++ ++++ .+. ++..+.+..+.+. .++
T Consensus 169 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------~~~----~~~~~~~~~~~~~-----~~l 227 (392)
T PRK12382 169 LLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH---AGER---------PSL----WSVVGLIWKPGLG-----LAL 227 (392)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC---cccC---------chH----HHHHHHHHHhHHH-----HHH
Confidence 999999999998877655544433222223332111 0000 011 1121222222211 111
Q ss_pred HhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccc
Q 008417 366 WQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNR 445 (566)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (566)
+.........+...+.++.|++. .++......++.+++.++.+++.||+++|+.+..+..+..+..+.+.+.. +.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---~~ 302 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP---TA 302 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc---cH
Confidence 12222222333334445556543 45566667788889999999999999999988888777766654433221 11
Q ss_pred ccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 446 KFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 446 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+......++.++.. ....+.. +...+..|++++|++.|+.++...+|..+++.+.|.+.+..|+..
T Consensus 303 -------~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~ 369 (392)
T PRK12382 303 -------WVALAGAALTGAGC-SLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPS 369 (392)
T ss_pred -------HHHHHHHHHHHHHH-HhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 11111122222222 2233333 677888999999999999999999999999999999999988655
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-27 Score=237.15 Aligned_cols=329 Identities=13% Similarity=0.064 Sum_probs=231.1
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
...+| .+.+++|.+..+.++..+.+.+++.+ +++.|+++|| +|||++++.+.++..++.+.+.. +++.+.++
T Consensus 23 ~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-----~g~r~~l~~~~~~~~i~~~~~~~-~~~~~~~~ 95 (392)
T PRK10473 23 LVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-----SGRKPVAIPGAALFIIASLLCSL-AETSSLFL 95 (392)
T ss_pred hhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-----hCChHHHHHHHHHHHHHHHHHHH-hCcHHHHH
Confidence 34444 45566999999999999999988877 7889999999 99999999999999999998888 88999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-HH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-TS 309 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~~ 309 (566)
+.|++.|++.+...+...+++.|.+ ++++|+...+..+....+|.+++|.+++.+.+..|||+.|++.+++.++ .+
T Consensus 96 ~~~~l~g~~~~~~~~~~~~~i~~~~---~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 96 AGRFLQGIGAGCCYVVAFAILRDTL---DDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999 6667888888888888899999999999988889999999999887776 44
Q ss_pred HhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh-HHHHhhccCCCh
Q 008417 310 GVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTNELGFTP 388 (566)
Q Consensus 310 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 388 (566)
+..+++||+++.+++ + .....++.++.++++..+...+...+..........+ .+++.+++|+++
T Consensus 173 ~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 238 (392)
T PRK10473 173 LSLFILKETRPARAP-A-------------ASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSR 238 (392)
T ss_pred HHHHHcCCCCCcccC-C-------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCH
Confidence 445566765432111 0 0111233445677776655443322211111111122 233445679999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhh
Q 008417 389 EFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQA 468 (566)
Q Consensus 389 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 468 (566)
.+.+.......++.+++.++.+++.||+++|+.+..+.++..++.+.+.+....+ ....+. .+.......
T Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~l~~~g~~~ 308 (392)
T PRK10473 239 GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHA---------VSLFGI-TLICAGFSV 308 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999988888777766655544432211 001110 000001111
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 469 SFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.+. .....+..|.++++ |..++...+++.+++.+++++.+.+|+..
T Consensus 309 ~~~--~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 309 GFG--VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HhH--HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 111 13334455544443 44455567888888999999998888643
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-28 Score=248.81 Aligned_cols=402 Identities=12% Similarity=0.096 Sum_probs=247.1
Q ss_pred HHHHHHHHHhhh-hhhhhHHHHHHhh-----cCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 138 VAMVYFVQGVLG-LARLAVNFYLKDD-----LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
+.+..+..++.. .....++ .+.++ .+.+..+.+++.+.+.+++++ ++++|+++|| +|||+.+.++.+
T Consensus 21 ~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-----~Grr~~~~~~~~ 94 (502)
T TIGR00887 21 AGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-----LGRKRVYGMELI 94 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHH
Confidence 444446666653 3333333 34332 245667788898888898888 6788999999 999999999999
Q ss_pred HHHHHHHHHHhhcch------HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHH
Q 008417 211 LGALSWSLMATIVES------KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF 284 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~------~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 284 (566)
+..++.+++++ +++ ++.++++|++.|++.+...+....++.|++ +.++|+...++......+|.++++.+
T Consensus 95 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~---p~~~Rg~~~~~~~~~~~~g~~~g~~~ 170 (502)
T TIGR00887 95 IMIIATVASGL-SPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFA---TKKWRGAMMAAVFAMQGFGILAGAIV 170 (502)
T ss_pred HHHHHHHHHHH-ccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887 554 678999999999999999999999999999 67778888888888888999999988
Q ss_pred HhHhhc-----------------------ccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCC-----------
Q 008417 285 SGSMVD-----------------------AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLP----------- 330 (566)
Q Consensus 285 ~~~l~~-----------------------~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~----------- 330 (566)
+..+.. .++||+.|.+.++..++.++..+++||+|++...++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 776532 2479999998888777777777889999886221111100
Q ss_pred ----CCCCccc------cchHHHHHHHHHHhcccchhHH-H---HHHHHHhhcccchhhhHHHHhhccCCChhhhhH---
Q 008417 331 ----LGDPSFF------ESSKQNMFQLWEAVKQPNVFLP-T---LFVFLWQATPHSDSAMFYFTTNELGFTPEFLGR--- 393 (566)
Q Consensus 331 ----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--- 393 (566)
...++.. +..+..++++++..+.++.+.. + ...+...+.++....+.+.+.++.|++....+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~ 330 (502)
T TIGR00887 251 VKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAY 330 (502)
T ss_pred cccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHH
Confidence 0000000 0011123333221111222111 1 111111222212222233344566776542211
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHH
Q 008417 394 ---------VKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTV 464 (566)
Q Consensus 394 ---------~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 464 (566)
...+..++.+++.++.+++.||+|||+.++++.++..++.+++.+........ . .. ....+...
T Consensus 331 ~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~---~--~~--~~~~~~~~ 403 (502)
T TIGR00887 331 EELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTH---G--FL--AIYVLAQF 403 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchh---H--HH--HHHHHHHH
Confidence 12344556777889999999999999998887777766655444322111100 0 01 11111111
Q ss_pred hhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCc---cchhhHHHHHHHHHHHhhhh
Q 008417 465 LSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKD---SFDNLATLIILCNLSSLLPL 540 (566)
Q Consensus 465 ~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~---~~~~~~~~~~~~~~~~~i~~ 540 (566)
++.....+.. .+..|.+|++.|+++.|+.+.+..+++++++.+.+.+.+..+.... .. .....+.+.+++.++..
T Consensus 404 ~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 482 (502)
T TIGR00887 404 FANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI-WMGHVLEIFALFMFLGI 482 (502)
T ss_pred HHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc-cchHHHHHHHHHHHHHH
Confidence 2222223333 6778999999999999999999999999999999999885321100 00 01112222222222333
Q ss_pred hhhccCCCCCCCCCccc
Q 008417 541 PLIGLLPQDSPDSTSKE 557 (566)
Q Consensus 541 ~~~~~~~~~~~~~~~~~ 557 (566)
++.+++||+++++.+|.
T Consensus 483 i~~~~lpEt~~~~leei 499 (502)
T TIGR00887 483 LFTLLIPETKGKSLEEL 499 (502)
T ss_pred HHheEeccCCCCCHHhh
Confidence 33456798887665443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=251.17 Aligned_cols=345 Identities=14% Similarity=0.086 Sum_probs=233.5
Q ss_pred HHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhH
Q 008417 167 PAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI--VESKYSAALSILLGSLSVAFS 243 (566)
Q Consensus 167 ~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~g~~~~~~ 243 (566)
..+.+++.+++.++..+ ++++|+++|| +|||++++++.++..++.+++... ..+++.+++.|++.|++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~-----~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 144 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDR-----FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIA 144 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhh-----hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 89999999999998888 7888999999 999999999999999988888552 334558999999999999999
Q ss_pred hhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHH---hHhhcccChHHHHHHHHHHHHHHHHhheeeccccc
Q 008417 244 DVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS---GSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV 320 (566)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~---~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~ 320 (566)
.+...+++.|++ ++++|+...++...+..+|.++++.++ +.+.+..+||+.|++.++..++.++..+++||++.
T Consensus 145 ~~~~~~~i~~~~---~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~ 221 (481)
T TIGR00879 145 SALVPMYLSEIA---PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPR 221 (481)
T ss_pred HhHHHHHHHccC---ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 999999999999 566777888888888899999999998 66667789999999977766666666677888653
Q ss_pred cCCCcCCCCC----------CCCCccccch----------------HHHHHHHHHHhcc--cchh-HHHHHHHHHhhccc
Q 008417 321 LGPSRRQNLP----------LGDPSFFESS----------------KQNMFQLWEAVKQ--PNVF-LPTLFVFLWQATPH 371 (566)
Q Consensus 321 ~~~~~~~~~~----------~~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~ 371 (566)
....+++.++ .......... +...+++++..++ +..+ ..++..+.......
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (481)
T TIGR00879 222 WLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGIN 301 (481)
T ss_pred HHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCe
Confidence 2110000000 0000000000 0000122222111 1111 11222222233333
Q ss_pred chhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 372 SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 372 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
....+.+.+.++.|++....++......++.+++.++.+++.||+++|+.+..+.++..++.+.+.+.............
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381 (481)
T ss_pred ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence 33444555667789999888888889999999999999999999999999888877766665554422111100000000
Q ss_pred chhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.........+..........+.. .+..+..|++.|+++.|+.+...++++++++.+.+.+.+..|+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~ 450 (481)
T TIGR00879 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGG 450 (481)
T ss_pred hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 01111112222223333333444 667899999999999999999999999999999999999877654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-28 Score=244.68 Aligned_cols=341 Identities=11% Similarity=0.015 Sum_probs=233.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHH-HH
Q 008417 156 NFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAAL-SI 233 (566)
Q Consensus 156 ~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r 233 (566)
.+.+.+++|.+.++.+++.+.+.+...+ +|+.|+++|| +|||++++.+.++..++.+.+++ +++++.+++ .|
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 115 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-----FGCRPVVIAGGLLASLGMILASF-SSNVIELYLTAG 115 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-----cCchHHHHhhHHHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 3455677999999999998888766555 7889999999 99999999999999999998888 888888765 56
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhhe
Q 008417 234 LLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAV 313 (566)
Q Consensus 234 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~ 313 (566)
++.|++.+...+...+++.+++ + ++|+.+.++...+..+|..++|.+++.+.+.+|||++|++.+++.++..+..+
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~---~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~ 191 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYF---Y-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGA 191 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHH---H-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 8999998876666777888888 3 46788899999888999999999999999999999999999987776433333
Q ss_pred ee-ccccccC--CCc--CCCCCCCCC-c-cccchHHHHHHH--HHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhcc
Q 008417 314 LV-KEQQVLG--PSR--RQNLPLGDP-S-FFESSKQNMFQL--WEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNEL 384 (566)
Q Consensus 314 ~~-~e~~~~~--~~~--~~~~~~~~~-~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (566)
++ ++++.++ ..+ +...+.... . ..+...+..++. ++.+++|.++..+...++..+.......++..+.++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 271 (455)
T TIGR00892 192 LMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDK 271 (455)
T ss_pred HhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHc
Confidence 33 3221110 000 000000000 0 000001111111 2567888877766655555555444455555566778
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC--CcchhhHHHH--HHHHHHHhHHHHhhhccccccccccchhhhhHHH
Q 008417 385 GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV--PLRKIFLANT--IFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSL 460 (566)
Q Consensus 385 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (566)
|+++.+.+++.++.+++.+++.++.+++.||. ++++...+.. ++.++..+.... . .+. +......+
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~-~~~-------~~~~i~~~ 341 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL--A-GDY-------TGLVIYCI 341 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH--h-chH-------HHHHHHHH
Confidence 99999999999999999999999999999974 3333333322 222222111111 1 111 11222233
Q ss_pred HHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 461 ILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
+.++..+.......+.+.+.+|++++++++|+++...++|+++||.++|.+.+..|
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence 33333333333444888899999999999999999999999999999999999875
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=238.52 Aligned_cols=355 Identities=13% Similarity=0.054 Sum_probs=237.8
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHH
Q 008417 138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS 215 (566)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~ 215 (566)
..+..+...+. ......++++++ ++|.+..+.|++.+.+.+++.+ +++.|+++|| +|||+++..+.++..++
T Consensus 18 ~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-----~g~k~~l~~~~~~~~~~ 91 (402)
T TIGR00897 18 GYIGVVVFMTGDGLEQGWLSPFLK-ALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-----IGPLKTMMIGLLLWCVG 91 (402)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHH-HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----cCcHHHHHHHHHHHHHH
Confidence 33333333333 344556677774 5899999999999999998877 7899999999 99999999999988887
Q ss_pred HHHHH---hhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHH-HHHHHHHhHhhcc
Q 008417 216 WSLMA---TIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGG-IVSSYFSGSMVDA 291 (566)
Q Consensus 216 ~~~~~---~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~l~~~ 291 (566)
.+++. ...++++.+++.|++.|++.+...+...+.+.+.+ ++++|+++.++.....++|. ++|+.+++.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~ 168 (402)
T TIGR00897 92 HAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT---KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA 168 (402)
T ss_pred HHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66542 21357888899999999998877777777788888 56678889998888888886 6899999999888
Q ss_pred cChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcc
Q 008417 292 YGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP 370 (566)
Q Consensus 292 ~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (566)
+||+..+|......++ .++..++.++.++++..++ + ++.++..+..+..+++|.++...+..++.....
T Consensus 169 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
T TIGR00897 169 FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQT-R---------EKFSELGKAATILFTNPNVLLGGMVRIINTIGL 238 (402)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCCCcccccC-C---------cchhhHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 8977666655443333 2333344444322111110 0 011122233456778888776665544444433
Q ss_pred cchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH-HHHHHHHHHHhHHHHhhhc-cccccc
Q 008417 371 HSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFL-ANTIFGTALGMTQVFLVTG-LNRKFG 448 (566)
Q Consensus 371 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 448 (566)
.....+.+.+.+++|++..+.+.+.....++.+++.++.|++.||+++|+.+. .+.+...+..+.+...... .+..
T Consensus 239 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-- 316 (402)
T TIGR00897 239 FGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSF-- 316 (402)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcH--
Confidence 34445556666778999999998888889999999999999999999887654 2223333332222221110 0000
Q ss_pred cccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 449 ISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 449 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+......++.+.... ...+......+. +++++|+++|+.+....+++.++|.+.|.+.+..|+..
T Consensus 317 ----~~~~~~~~~~G~~~~-~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~ 381 (402)
T TIGR00897 317 ----AVALIIAIALGIFLA-GYVPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIG 381 (402)
T ss_pred ----HHHHHHHHHHHHHHH-HHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 111111222222222 233444455555 45689999999999999999999999999999877543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-27 Score=238.84 Aligned_cols=347 Identities=14% Similarity=0.072 Sum_probs=225.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhcC---CCHHHHHHHHHHhhhhhh---h-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 138 VAMVYFVQGVLGLARLAVNFYLKDDLH---LDPAETAVISGFSSLPWL---I-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~g---~s~~~~g~~~s~~~~~~~---~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
.++.++.+.+.........+++.++++ .+..+.+...+++.++++ + ++++|+++|| +|||+.+..+.+
T Consensus 27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-----~Grr~~l~~~~~ 101 (432)
T PRK10406 27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-----HGRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHH
Confidence 334455666654556666677777774 566655555555544444 5 5678999999 999999999999
Q ss_pred HHHHHHHHHHhhcchHH--------HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHH
Q 008417 211 LGALSWSLMATIVESKY--------SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSS 282 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~~~--------~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 282 (566)
+++++.+++++ ++++. .++++|+++|++.+...+...+++.|++ ++++|+...++...+...|.++++
T Consensus 102 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~---p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 102 MMCFGSLVIAC-LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVA---VEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhC---CCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999988 77653 5889999999999999999999999999 556677777777766677777777
Q ss_pred HHHhHhh--------cccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhccc
Q 008417 283 YFSGSMV--------DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQP 354 (566)
Q Consensus 283 ~~~~~l~--------~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (566)
.+...+. ..+|||++|++.+++.++.++....+||+++.+.++. +.+ +++++.++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~------------~~~---~~~~~l~~~~ 242 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRAL------------KEA---GSLKGLWRNR 242 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh------------ccc---ccHHHHHhhH
Confidence 6655443 2579999999988877765555556666544211100 001 1233455666
Q ss_pred chhHHHHHHHH-HhhcccchhhhHHHH-hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHH
Q 008417 355 NVFLPTLFVFL-WQATPHSDSAMFYFT-TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL 432 (566)
Q Consensus 355 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~ 432 (566)
+.+...+..++ ....+.....+.+.+ .+.+|++..+.+....+..++..++..+.|++.||+++|+.+.++.++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 322 (432)
T PRK10406 243 RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALF 322 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 65554433222 222222333444433 4557999888888888877888888889999999999998877665544333
Q ss_pred HhHHHH-hhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhh-hhhhHhHHHHH
Q 008417 433 GMTQVF-LVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNG-GSVLGGLLGAG 510 (566)
Q Consensus 433 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~~~g~ 510 (566)
.+.+.. .....+. ........+..............+.+|.+|++.|+++.|+.+.+.++ .+...|.+.+.
T Consensus 323 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~ 395 (432)
T PRK10406 323 TVPILSALQNVSSP-------YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS 395 (432)
T ss_pred HHHHHHHHHcCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH
Confidence 222221 1111111 11111111111111111222337788999999999999999887765 34457777775
Q ss_pred HHHhcC
Q 008417 511 LTQLFG 516 (566)
Q Consensus 511 l~~~~g 516 (566)
+ +..|
T Consensus 396 l-~~~g 400 (432)
T PRK10406 396 L-KSIG 400 (432)
T ss_pred H-HHhC
Confidence 5 4444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=241.08 Aligned_cols=354 Identities=16% Similarity=0.089 Sum_probs=242.5
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
.....+++.+++|++..+.+++.++..++..+ +++.|+++|| +|||++++.+.++..++.+++++ +++++.++
T Consensus 14 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 87 (379)
T TIGR00881 14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-----SNPRVFLPIGLILCAIVNLFFGF-STSLWVMA 87 (379)
T ss_pred hhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-----hCCeehhHHHHHHHHHHHHHHHH-hhhHHHHH
Confidence 33444567788999999999999999888888 7888999999 99999999999999999999988 89999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHH-HHHhHhhcccChHHHHHHHHHHHHH-H
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSS-YFSGSMVDAYGVRFVFGVTALLPLI-T 308 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~gwr~~f~i~~i~~~~-~ 308 (566)
+.|++.|++.+...+...+++.|++ ++++|+...++...+..+|.++++ .+++.+.+..+||+.|++.+++.++ .
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 88 ALWALNGIFQGMGWPPCGRTVTKWF---SRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVS 164 (379)
T ss_pred HHHHHHHhhccccCCchHHHHHHhc---CHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 555667777777777789999999 5777777788999999998887776 5
Q ss_pred HHhheeeccccccCCCcCCCCC--CC----CCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHH-h
Q 008417 309 SGVAVLVKEQQVLGPSRRQNLP--LG----DPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFT-T 381 (566)
Q Consensus 309 ~~~~~~~~e~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 381 (566)
++..++.+|+++.+...+.+++ .+ .+...+..+.........+++|.++...+..++..........+.+.+ .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (379)
T TIGR00881 165 LICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLT 244 (379)
T ss_pred HHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677776543211111000 00 000000011111233456778887776655555444333334444444 4
Q ss_pred hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHH
Q 008417 382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLI 461 (566)
Q Consensus 382 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 461 (566)
+.+|+++.+.+.......++.+++.++.+++.||..+++.............+.+.......... ........+.
T Consensus 245 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 319 (379)
T TIGR00881 245 QEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAAN-----PLMDLICLFA 319 (379)
T ss_pred HHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchh-----HHHHHHHHHH
Confidence 55799999999999999999999999999999986433322222221111111111111100000 0111111112
Q ss_pred HHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 462 LTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.+............+..+..|++.||++.|+.+.+.++|+.+++.+.|.+.+..|+..
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 2222222222223678899999999999999999999999999999999999988754
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=236.70 Aligned_cols=349 Identities=13% Similarity=0.107 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
.+.+....++.... +...+.+++++++++|++..++|++.+.+.+..++ +++.|+++|| +|||++++++.++.
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-----~g~k~~~~~~~~~~ 83 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-----FDKKRYMLLAITAF 83 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCcchhHHHHHHHH
Confidence 45555556655554 56677788899888999999999999988776666 8899999999 99999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc
Q 008417 213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY 292 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 292 (566)
.++.+.+++ .++++.++++|++.|.+.+...+...++..|.. ++++|++.+++.+...++|.++||.+++++.+ .
T Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~ 158 (395)
T PRK10054 84 ASGFIAIPL-VNNVTLVVLFFALINCAYSVFSTVLKAWFADNL---SSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q 158 (395)
T ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 898888888 889988888898888887777777888888888 55678888899988889999999999999875 7
Q ss_pred ChHHHHHHHHHHHHHH-HHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhccc
Q 008417 293 GVRFVFGVTALLPLIT-SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371 (566)
Q Consensus 293 gwr~~f~i~~i~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (566)
||+..|++.+++.++. ++..+++|++++++++ + + + ...+..+.+++|.++...+..++..+...
T Consensus 159 g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-~------------~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (395)
T PRK10054 159 SINLPFWLAAICSAFPLVFIQIWVQRSEKAIAT-E------------T-G-SVWSPSVLLQDKALLWFTCSGFLASFVSG 223 (395)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhcccccccc-c------------h-h-hhhhhhhhccCceehHHHHHHHHHHHHHH
Confidence 9999999988777774 3344445554332110 0 0 0 11223456788887776655554333222
Q ss_pred chhhhHHHHh---hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccc
Q 008417 372 SDSAMFYFTT---NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFG 448 (566)
Q Consensus 372 ~~~~~~~~~~---~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (566)
....+...+. .+.+.+....+.+.....+..+......+++.||.++|+.+..+..+..+..+.+.+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----- 298 (395)
T PRK10054 224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSL----- 298 (395)
T ss_pred HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHH-----
Confidence 2111222222 34566667778777777777777778889999999999988877766666554443221111
Q ss_pred cccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 449 ISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 449 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+.+.....+. ..+.....|.. +.+.+..|++.++++++..+ ...+|..+||.++|.+.|.+|+..
T Consensus 299 ----~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~ 364 (395)
T PRK10054 299 ----LLWGMSAAVF-TVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWS 364 (395)
T ss_pred ----HHHHHHHHHH-HHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhh
Confidence 1111111111 13333444444 78889999999999998765 677899999999999999988755
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=247.54 Aligned_cols=368 Identities=15% Similarity=0.137 Sum_probs=245.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
+..+++.++..++.........+.+.+++|++..+.+++.+.+.+++.+ +++.|+++|| +|||+.++.+.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-----YGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHH
Confidence 4455566666666543344444566678999999999999999888887 6788999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
++.+++++ .++++.+++.|++.|++.+...+....++.|.+ ++++|+..+++...+..+|.++++.+++.+.+.++
T Consensus 97 ~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 97 VGTLACGF-APGYWTLFIARLVIGMGMAGEYGSSATYVIESW---PKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999988 899999999999999999998889999999999 56677888888888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCC-c-cccchHHHHHH---------HHHHhc----------
Q 008417 294 VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDP-S-FFESSKQNMFQ---------LWEAVK---------- 352 (566)
Q Consensus 294 wr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~---------~~~~~~---------- 352 (566)
||+.|++.++..++.++....+||+++++++++++.+.++. . .....+..... .+..+.
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVA 252 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99999886554444444444556654321111111000000 0 00000000000 000000
Q ss_pred ------------------ccc--hhHHHHHHHHHhhcc-cchhhhHHHHh-hccCCChhhhhHHHHHHHHHHHHHHHHHH
Q 008417 353 ------------------QPN--VFLPTLFVFLWQATP-HSDSAMFYFTT-NELGFTPEFLGRVKFVTSVASLLGVGLYN 410 (566)
Q Consensus 353 ------------------~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 410 (566)
.++ ....+....+..+.+ .....+.+.+. +++|++..+.+.+.+...++.+++.++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g 332 (496)
T PRK03893 253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG 332 (496)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000011111111 11233445555 47899999999999999999999999999
Q ss_pred HHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHH
Q 008417 411 GFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLF 490 (566)
Q Consensus 411 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 490 (566)
++.||+++|+.+..+..+..+..+.+..... ... +......++.+..+.........++.+.+|++.+|+++
T Consensus 333 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 404 (496)
T PRK03893 333 FLGDWLGTRKAYVCSLLISQLLIIPVFAIGG-ANV-------WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGL 404 (496)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhhccc-cHH-------HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhccc
Confidence 9999999999877766555444332221111 100 11111111111122222222237788999999999999
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 491 ATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 491 g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
|+.+....+|+.+||.++|.+.+.+|+..
T Consensus 405 ~~~~~~~~~g~~lgp~l~g~l~~~~g~~~ 433 (496)
T PRK03893 405 GFTYNVGALGGALAPILGALIAQRLDLGT 433 (496)
T ss_pred chhhhhhhHHHHHHHHHHHHHhccCChHH
Confidence 99999999999999999999999887654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=239.92 Aligned_cols=349 Identities=19% Similarity=0.235 Sum_probs=240.2
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHH-----HHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAE-----TAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL 207 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~-----~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~ 207 (566)
...+++..+..++. ....+.++.++++ +|++..+ .|++.++..++..+ +|++|+++|| +|||+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~ 89 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-----KGRKIMLLR 89 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hCcHHHHHH
Confidence 33344455555665 4556667777754 8887544 47777888777766 7899999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhH
Q 008417 208 SGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS 287 (566)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 287 (566)
+.++.+++.+++.. .++++.+++.|++.|++.+. .+...+++.+.. ++++|+...+.......+|.+++|.+++.
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 90 SALGMGIVMVLMGL-AQNIWQFLILRALLGLLGGF-VPNANALIATQV---PRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhc---CHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887 88999999999999998664 456677888888 56677888888888889999999999999
Q ss_pred hhcccChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHH-HHHHH
Q 008417 288 MVDAYGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPT-LFVFL 365 (566)
Q Consensus 288 l~~~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 365 (566)
+.+..+||+.|++.+++.++ .++..++++|++++.++ +.+...++.++.+++++.+... ...++
T Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (408)
T PRK09874 165 LADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSK--------------KEMLHMREVVTSLKNPKLVLSLFVTTLI 230 (408)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccc--------------hhhhHHHHHHHhCcCCchHHHHHHHHHH
Confidence 99889999999999887776 34444556665332111 1111234455667777765533 22233
Q ss_pred HhhcccchhhhHHHHhhccCCChh----hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhh
Q 008417 366 WQATPHSDSAMFYFTTNELGFTPE----FLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVT 441 (566)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~~~~----~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 441 (566)
+.........+...+..+.+.+.. ..+.+..+..++.+++.++.+++.||+++|+.+..+..+..+..+.......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T PRK09874 231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT 310 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 333222233333444444322222 2455556677888889999999999999999888777666554433322211
Q ss_pred ccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 442 GLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 442 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
. +......++.++ +.....|.. +.+.+..|++.+|+.+++.+.+.++|..+||.++|.+.+..|+..
T Consensus 311 ~----------~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~ 378 (408)
T PRK09874 311 P----------LQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRA 378 (408)
T ss_pred H----------HHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhH
Confidence 1 111111222222 223333444 777788899999999999999999999999999999999887654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-27 Score=232.94 Aligned_cols=345 Identities=12% Similarity=0.011 Sum_probs=246.7
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH-HHHH
Q 008417 138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL-LGAL 214 (566)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~-~~~~ 214 (566)
+...+|...+. +...+.++.++++ +|+|..++|++.+++.+...+ ++++|+++|| +||+........ ...+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-----~~~~~~~~~~~~~~~~l 82 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-----ANHIIIALRLLALASAI 82 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHH
Confidence 44455555554 5667778888855 899999999999998777766 8899999999 777443322211 1111
Q ss_pred HHH-HHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 215 SWS-LMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 215 ~~~-~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
..+ .... +++++.+++.|++++.+.+...+...++..+.. ++++..++....+.++|.++||.+++.+.+++|
T Consensus 83 ~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~-----~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g 156 (382)
T TIGR00902 83 FAAAFSAG-AHNAWLLFIAIGLFALFFSAGMPIGDALANTWQ-----KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD 156 (382)
T ss_pred HHHHHHHh-hhhHHHHHHHHHHHHHHHccchhHHHHHHHHHH-----HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112 2234 788999999999999988887777777765432 345667788888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccch
Q 008417 294 VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSD 373 (566)
Q Consensus 294 wr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (566)
||+.|++.++..++.++.. .++|++++++++++ +..+..++..+.+|+|+++..++..++........
T Consensus 157 ~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~ 224 (382)
T TIGR00902 157 EQNILAILTAGLAFMLIGF-LIKPTIPPKDAIPE-----------DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY 224 (382)
T ss_pred hhHHHHHHHHHHHHHHHHH-HcCCCCCCCccccc-----------cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 9999988776533333333 33333211111110 00011234567789998888877766666655555
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccch
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEW 453 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (566)
..+.+.+.++.|.++.++|.+..+..++.+++.++.+++.||++.|+.+.++.+...+..+.+.+.... +
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~----------~ 294 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF----------P 294 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH----------H
Confidence 666666777899999999999999999999999999999999999999988888888776555432221 2
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHH-HHhhhhhhHhHHHHHHHHhcCC
Q 008417 454 FAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMS-ISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
.......+.++..+........++.+. |++++++..++++. ...+|..+++.++|.++|.+|.
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~ 358 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 333445555556655555555788887 88999999999874 5679999999999999999864
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=234.67 Aligned_cols=331 Identities=14% Similarity=0.095 Sum_probs=236.3
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHH
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY 227 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (566)
....+.++.++++++|.+..++|++.+...++..+ +++.|+++|| +|||++++.+.++..++.+.+.+ .++++
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-----~g~k~~l~~~~~~~~~~~~~~~~-~~~~~ 100 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-----FGAKPMIVTGMLMRAAGFATMAI-AHEPW 100 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-----hCchHHHHHHHHHHHHHHHHHHH-hccHH
Confidence 45677778888888999999999999988776655 7899999999 99999999999999999999988 88999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH
Q 008417 228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 228 ~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~ 307 (566)
.+++.|++.|++.+...+...+++.|++ ++++|+..+++.....++|..+||.+++++. .+|||+.|++.++..++
T Consensus 101 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~ 176 (400)
T PRK11646 101 LLWLSCILSGLGGTLFDPPRTALVIKLI---RPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVL 176 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence 9999999999999988888899999999 5667888899988888999999999999998 78999999998877666
Q ss_pred H-HHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCC
Q 008417 308 T-SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGF 386 (566)
Q Consensus 308 ~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 386 (566)
. ++..+++||.+.. . . .++..+++.+.+++|+++...+..+.+.........+.+.+.++.+.
T Consensus 177 ~~i~~~~~~~~~~~~--~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 240 (400)
T PRK11646 177 AAAFNAWLLPAYKLS--T-V-------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG 240 (400)
T ss_pred HHHHHHHhCCccccc--c-c-------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC
Confidence 3 3334445543211 0 0 00112234456778876655443333222221222334455556555
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHh-hcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHh
Q 008417 387 TPEFLGRVKFVTSVASLLGVGLYNGFL-KNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVL 465 (566)
Q Consensus 387 ~~~~~g~~~~~~~~~~~~~~~~~~~l~-~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 465 (566)
++.+.+++..+..++.+.+....+++. ||++.++.+..+.++..++.+.+..... . +.......+.. .
T Consensus 241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~---~-------~~~~~~~~l~~-~ 309 (400)
T PRK11646 241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN---L-------QQLFTLICLFY-I 309 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh---H-------HHHHHHHHHHH-H
Confidence 778888888777776665555555555 4566566666666555555443322211 1 11111111111 2
Q ss_pred hhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 466 SQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 466 ~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
+.....|.. +++.+..|++++|+++|+.+....+|..+||.++|.+.+..+
T Consensus 310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 223333443 788899999999999999999999999999999999999853
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=245.11 Aligned_cols=362 Identities=13% Similarity=0.078 Sum_probs=259.3
Q ss_pred HHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 136 FAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
..+++..+...+. ......++ .+.+++|.+..+.+++.+.+.++..+ .++.|+++|| +|||++++++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~ 78 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-----FGTRRLFLISTFAFT 78 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-----hCcHHHHHHHHHHHH
Confidence 3444555666665 34444444 55567999999999999999888888 6788999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
++.++++. +++++.+++.|+++|++.+...+...+++.|++ ++++|+..+++...+..+|..+||.+++++.+++|
T Consensus 79 ~~~~~~~~-~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~---~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 79 LGSLLCGV-APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY---PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 99999998 899999999999999999999999999999999 56677888888888889999999999999999999
Q ss_pred hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCC-----------------CCCCCCccccch---------------
Q 008417 294 VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQN-----------------LPLGDPSFFESS--------------- 340 (566)
Q Consensus 294 wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~-----------------~~~~~~~~~~~~--------------- 340 (566)
||+.|++.+++.++ .++..+++||+++...++.+. .+..+.......
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIA 234 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 99999998877766 344445566643321111000 000000000000
Q ss_pred --------HHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHH-hhccCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 008417 341 --------KQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFT-TNELGFTPEFLGRVKFVTSVASLLGVGLYNG 411 (566)
Q Consensus 341 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 411 (566)
+++.. -.+.++++.++...+..++..+.......+.+.+ .+..|+++.+.++......++.+++.++.++
T Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 313 (485)
T TIGR00711 235 FVVWELTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR 313 (485)
T ss_pred HHHHHHcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 1245677777666655555544433333444434 4457999999999999999999999999999
Q ss_pred HhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHH
Q 008417 412 FLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFA 491 (566)
Q Consensus 412 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 491 (566)
+.||+++|+.+.++..+..++.+.+.+........ +......++.++..+..+.+......+..|++++|++.|
T Consensus 314 l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (485)
T TIGR00711 314 MGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPF------LAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS 387 (485)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence 99999999988888777766655443211111100 111112223333333444455566778889999999999
Q ss_pred HHHHHHhhhhhhHhHHHHHHHHh
Q 008417 492 TLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 492 ~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
+.+..+++|+.+|+.+.|.+.+.
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=241.27 Aligned_cols=344 Identities=18% Similarity=0.273 Sum_probs=242.7
Q ss_pred HHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHH
Q 008417 140 MVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWS 217 (566)
Q Consensus 140 ~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~ 217 (566)
+..+...+. ......++.++.+++|.+..+++++.+++.++..+ +++.|+++|| +|||++++++.++.+++.+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~l~~~~~~~~~~~~ 77 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-----FGRRRVLIIGLLLFALGSL 77 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-----S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCeeeEeehhhhhhhHHH
Confidence 344444554 34455555477788999999999999999888777 7889999999 9999999999999999966
Q ss_pred HHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHH
Q 008417 218 LMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFV 297 (566)
Q Consensus 218 ~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~ 297 (566)
.+.+ +++.+.+++.|++.|++.+...+...+++.|++ ++++|+..+++......+|.++|+.+++.+.+.+|||+.
T Consensus 78 ~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~ 153 (352)
T PF07690_consen 78 LLAF-ASNFWLLLIARFLLGIGSGFFSPASNALIADWF---PPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWA 153 (352)
T ss_dssp HHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCH
T ss_pred Hhhh-hhhHHHHhhhccccccccccccccccccccccc---hhhhhhhccccccchhhhhhhcccchhhhhhhccccccc
Confidence 6665 678889999999999999999999999999999 556788888989888999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccccchHHHHHH-HHHHhcccchhHHHHHHHHHhhcccchhh
Q 008417 298 FGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATPHSDSA 375 (566)
Q Consensus 298 f~i~~i~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (566)
|++.+++.++..+ ..+++++++++++.++++++. ++.++..++ ++...+++.+|......++..+.......
T Consensus 154 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF07690_consen 154 FLISAILSLIAAILFILFLPEPPPPRERESPKESE------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSF 227 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhHhhhhhhcccccccccccccc------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhc
Confidence 9999998888544 335555544433222221110 012222222 33445555555333333333333333444
Q ss_pred hHHHH-hhccCCC-hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccch
Q 008417 376 MFYFT-TNELGFT-PEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEW 453 (566)
Q Consensus 376 ~~~~~-~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (566)
+.+.+ .+.+|++ ..+.+.+..+..+..+++.++.+++.||+++++..........+..+.+.+.....+. .
T Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 300 (352)
T PF07690_consen 228 FLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSP-------V 300 (352)
T ss_dssp HHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHH-------H
T ss_pred ccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-------H
Confidence 45554 5667888 7899999999999999999999999999998877776666665554444332222111 1
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHh
Q 008417 454 FAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGG 505 (566)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~ 505 (566)
......++.++..+........+..+..|++++|++.|+.+...+++..+||
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 1111223333333333444448999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=231.73 Aligned_cols=371 Identities=13% Similarity=0.117 Sum_probs=234.6
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHh-hhhhhhcchhhhcccccCcCCCCCchH-hHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSY-LVLSG 209 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~~~~G~grr~~-~~~~~ 209 (566)
.....+....|..++. .+..+.++.++++++|.+.+++|++.+.. ..++++++++|.++|| +|||+. ++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr-----~g~r~~~~~~~~ 89 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDK-----RGDRKSLIVFCC 89 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccchhHHHHHHH
Confidence 3455566667777776 66788899999999999999999987665 5677778777656999 778776 45556
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh
Q 008417 210 LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV 289 (566)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 289 (566)
++..++.+++++ +++++.+++.+.+.+...+...+...+++.|+.+++.+ ..+...+...++.++|.++||.+++.+.
T Consensus 90 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~ 167 (393)
T PRK15011 90 LLGVLACTLFAW-NRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR-EAVMFSSFLRAQVSLAWVIGPPLAYALA 167 (393)
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666767777 88888876666555555556667777777777633221 2234456777777899999999999999
Q ss_pred cccChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhccc-chhHHHHHHHHHh
Q 008417 290 DAYGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQP-NVFLPTLFVFLWQ 367 (566)
Q Consensus 290 ~~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 367 (566)
+++|||+.|++.++..++ .++..+++||.++.++..++ +.+ .. .+++ ..+......++..
T Consensus 168 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----~~---~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK15011 168 MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG-----------TLE----AP---RRNRRDTLLLFVICTLMW 229 (393)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc-----------ccc----cc---ccccccHHHHHHHHHHHH
Confidence 999999999999887776 44555667776432211100 000 00 0121 1222222212211
Q ss_pred hcccchhhhHH-HHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccc
Q 008417 368 ATPHSDSAMFY-FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRK 446 (566)
Q Consensus 368 ~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (566)
........+.+ ++.+++|+++.+.+.+.....++.+++.++.|++.||+++|+.+..+.+...+.......... .
T Consensus 230 ~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~- 305 (393)
T PRK15011 230 GTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS---P- 305 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh---H-
Confidence 21212222333 334568999999998888777888899999999999999998776655444333222211111 1
Q ss_pred cccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhH
Q 008417 447 FGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLA 526 (566)
Q Consensus 447 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~ 526 (566)
+......++..+..+........+..+..|+ .+|++.++++...++|..+++.++|.+.+.+|+..
T Consensus 306 ------~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~------- 371 (393)
T PRK15011 306 ------AILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHA------- 371 (393)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------
Confidence 1111111111111112222222566787874 59999999999999999999999999999877543
Q ss_pred HHHHHHHHHHhhhhhhhccCC
Q 008417 527 TLIILCNLSSLLPLPLIGLLP 547 (566)
Q Consensus 527 ~~~~~~~~~~~i~~~~~~~~~ 547 (566)
.+.++.++.++.++.++..|
T Consensus 372 -~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 372 -VFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred -HHHHHHHHHHHHHHHHHhhc
Confidence 33333344444444444444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=233.31 Aligned_cols=341 Identities=15% Similarity=0.092 Sum_probs=238.1
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
++.+....+..++. ....+.++.+.. ++|.|..++|++.+.+.+++.+ ++++|+++|| +|||+.+..+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-----~g~k~~~~~~~~~~ 81 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-----IGFNRSYYLASLIF 81 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHH
Confidence 44555555555665 556677777765 5899999999999999999888 7788999999 99999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc
Q 008417 213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY 292 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 292 (566)
.++.+.+++ +++++.++++|+++|++.+...+...+.+.+.. ++++|++.++....+.++|..+|+.+++.+.+..
T Consensus 82 ~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 82 AAGCAGLGL-MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG---TSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999998888 899999999999999999988888777778887 4456788888888888999999999999987654
Q ss_pred ChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhccc
Q 008417 293 GVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371 (566)
Q Consensus 293 gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (566)
.|...+. .+..... ..+.....++++. + + + +. ++.++.+++|..+......+.......
T Consensus 158 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~--~-~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (381)
T PRK03633 158 MSVLPWV-TGLVLAAILPLLFTRILNQQA--E--N-H----------DS----TSIWPMLKLRQARLGVNGCIISGIVLG 217 (381)
T ss_pred cchHHHH-HHHHHHHHHHHHHhcccCCCC--C--C-C----------CC----CCHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3333332 2222222 2222212222111 0 0 0 00 112344666665544332333322222
Q ss_pred chhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 372 SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 372 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
....+.+.+.++.|.++...+.+.....++.+++.++.+++.||+++|+.+..+..+..++.+... .. ..
T Consensus 218 ~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~~------- 287 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-AA------- 287 (381)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-HH-------
Confidence 333445556667899999999998899999999999999999999999988777666665543322 11 10
Q ss_pred chhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.. ....+.+ .......|.. +...+..|+++++...+..+...++|..+||.++|++.|..|+..
T Consensus 288 --~~-~~~~l~g-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~ 352 (381)
T PRK03633 288 --MA-PALFILG-AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNL 352 (381)
T ss_pred --HH-HHHHHHH-HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 00 0111111 2222334444 777888888888888888888899999999999999999887654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=232.99 Aligned_cols=342 Identities=13% Similarity=0.064 Sum_probs=242.7
Q ss_pred HHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHH
Q 008417 141 VYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSL 218 (566)
Q Consensus 141 ~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~ 218 (566)
..+...+. ....+. .+.+.+++|.+..+++++.+.+.++..+ ++++|+++|| +|||+++..+.++..++.+.
T Consensus 13 ~~~~~~~~~~~~~~~-~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-----~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 13 LSILGPLGIDMYLPA-FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-----YGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHhccc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-----cCChHHHHHHHHHHHHHHHH
Confidence 33444444 333333 4456677999999999999999988887 7888999999 99999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHH
Q 008417 219 MATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVF 298 (566)
Q Consensus 219 ~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f 298 (566)
++. .++++.+++.|++.|++.+...+...+++.|++ ++++|+..+++......+|..+|+.+++.+.+..|||+.|
T Consensus 87 ~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 162 (385)
T TIGR00710 87 LAL-SNNIETLLVLRFVQAFGASAGSVISQALVRDIY---PGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF 162 (385)
T ss_pred HHH-HccHHHHHHHHHHHHcchhHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 888 899999999999999999999999999999999 5667888889888888999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh-
Q 008417 299 GVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM- 376 (566)
Q Consensus 299 ~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 376 (566)
++.+++.++ .++..++.||+++.+++ + +.++..++.++.+++++++...+...+..........+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (385)
T TIGR00710 163 AFLSLAGILLSALIFFILPETLPYEAR-I------------QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGA 229 (385)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccc-C------------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcC
Confidence 998887776 34444556665432111 0 22234455667788888776654433322222222222
Q ss_pred HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhh
Q 008417 377 FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAI 456 (566)
Q Consensus 377 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (566)
..++.+++|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+..+..++.+.+.......... .....
T Consensus 230 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 304 (385)
T TIGR00710 230 PFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGS-----WAMII 304 (385)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HHHHH
Confidence 3344457899999999999999999999999999999999999988887776666655443322111000 01111
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHH
Q 008417 457 GDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGL 511 (566)
Q Consensus 457 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l 511 (566)
....+.++..............+..| +.++++.++.+.....++.+.+.+.+.+
T Consensus 305 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 305 GPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11122222222222222255566665 6789999999888877666655555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=228.77 Aligned_cols=351 Identities=11% Similarity=0.048 Sum_probs=236.2
Q ss_pred chHHHHHHHHHHHhh-hhhhhhHHHHHHh-hcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 134 DNFAVAMVYFVQGVL-GLARLAVNFYLKD-DLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
+.+.+...+|..++. -....++.+.+.+ ++|+|.+|.+++.++..+++.+ +.+.|++.|| +|.|+++.++.+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-----~G~R~v~~~~~l 108 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-----FGGRRWTVFSTA 108 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChHHHHHHHH
Confidence 344455555555554 4445555555544 7999999999999999888877 6888999999 999999999999
Q ss_pred HHHHHHHHHHhhc-----chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHH
Q 008417 211 LGALSWSLMATIV-----ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS 285 (566)
Q Consensus 211 ~~~~~~~~~~~~~-----~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 285 (566)
+..+..+.+++ + ++++.+++.|++.|++ +...+.....+++++ ++++||.++++..+..++|..+++++.
T Consensus 109 l~~i~~~~~~~-a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf---p~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 109 ILIIPCVWLGI-AVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF---PKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHHH-HHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC---CHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999988887 5 7999999999999998 557778888999999 777788888888666667776665555
Q ss_pred hHhh-----c-------------ccChHHHHHHHHHHHHHH-HHhheeeccccccCCCcCCCCCCCCCccccchHHHHHH
Q 008417 286 GSMV-----D-------------AYGVRFVFGVTALLPLIT-SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ 346 (566)
Q Consensus 286 ~~l~-----~-------------~~gwr~~f~i~~i~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (566)
..+. . ..+||.++++..++.++. ++.++++++.+.. +...++
T Consensus 184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-------------------~~~~~~ 244 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-------------------RASIAD 244 (462)
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-------------------ccCHHH
Confidence 4322 2 334788888887777664 3444444443220 112355
Q ss_pred HHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 008417 347 LWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANT 426 (566)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~ 426 (566)
..+.+|+|..|...++.++....+.....+++++.++ .++.........+..+...+..+++|+++||+|+++++.++.
T Consensus 245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~ 323 (462)
T PRK15034 245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINF 323 (462)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHH
Confidence 6678999999988866655443333334344333333 333333322334456778888899999999999999999888
Q ss_pred HHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCC---------------------Cc
Q 008417 427 IFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPE---------------------GM 485 (566)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 485 (566)
+.+.+.............. .. ........+...+..+......+-++.+.+|+ ++
T Consensus 324 i~~~i~~~~~~l~lp~~~~---~~-~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (462)
T PRK15034 324 IFMAIFSALLFLTLPGTGS---GN-FIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTE 399 (462)
T ss_pred HHHHHHHHHHHHHhccccc---cH-HHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHH
Confidence 7776665443332211100 00 01111111122223333444444556666653 26
Q ss_pred hHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 486 EATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 486 ~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
.|.+.|+....+.+|+.+-|.+.|...+..|..
T Consensus 400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~ 432 (462)
T PRK15034 400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP 432 (462)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc
Confidence 789999999999999999999999998887654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=232.11 Aligned_cols=336 Identities=13% Similarity=0.051 Sum_probs=231.0
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHH
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS 228 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (566)
+..+.++. +.+++|.+..+.++..+++.+++.+ ++++|+++|| +|||++++.+.++..++.+++.+ +++++.
T Consensus 34 ~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-----~Grr~~l~~~~~~~~~~~~~~~~-a~~~~~ 106 (413)
T PRK15403 34 LIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-----IGRRPVLITGALIFTLACAATLF-TTSMTQ 106 (413)
T ss_pred hhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----cCchHHHHHHHHHHHHHHHHHHH-cCCHHH
Confidence 44445554 5677999999999999999999887 7889999999 99999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHH
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT 308 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~ 308 (566)
++++|+++|++.+...+...+++.|++ +++++++.+++......+|.++||.+++.+.++.|||+.|++.+++.++.
T Consensus 107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 107 FLIARFIQGTSICFIATVGYVTVQEAF---GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999999999999876667777888998 55566777888887788999999999999998899999999999887774
Q ss_pred H-HhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHH-HHhhccCC
Q 008417 309 S-GVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFY-FTTNELGF 386 (566)
Q Consensus 309 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~ 386 (566)
. ...+++||+++.+++ + ...+...+++++.++||.++...+..++..........+.+ +..+..|+
T Consensus 184 ~~~~~~~lp~~~~~~~~---~---------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~ 251 (413)
T PRK15403 184 FVGLLLAMPETVKRGAV---P---------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGM 251 (413)
T ss_pred HHHHHHhCCCCccccCC---C---------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCC
Confidence 4 344567776432111 0 02233456677888999888776554444433333333333 33445699
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh-hccccccccccchhhhhHHHHHHHh
Q 008417 387 TPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV-TGLNRKFGISDEWFAIGDSLILTVL 465 (566)
Q Consensus 387 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 465 (566)
++.+.++.......+.+++..+.+++.++..+++.......+..++.+++.... ...+.. .......++.. .
T Consensus 252 s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~------~~~~~~~~l~~-~ 324 (413)
T PRK15403 252 TTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVW------LWSVLGTSLYA-F 324 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccH------HHHHHHHHHHH-H
Confidence 999999998888888888888888877655544443333222222222221111 001100 01111111111 2
Q ss_pred hhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 466 SQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
+.....|........-....+|++.|+.+.....+..+++...|++.+.
T Consensus 325 G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 325 GIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222223221112222233579999999999999999999999988776
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=228.41 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=243.6
Q ss_pred chHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHH
Q 008417 134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL 211 (566)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~ 211 (566)
.++.++...+...+. ......+++.+ ++++.+..+.+++.+.+.+++.+ +|+.|+++|| +|||++++.+.++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-----~grr~vl~~~~~~ 77 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-----FPKGRVMFIANGI 77 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-----cCCchhhHHHHHH
Confidence 355566666666664 44455555555 56899999999999999999888 8999999999 9999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc
Q 008417 212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA 291 (566)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 291 (566)
..++.+.+++ ..+. ++.|+++|++.+...+...+++.|++ ++++|++++++..+...+|.++||.++|++.+.
T Consensus 78 ~~~~~~~~~~-~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~---~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 78 KLLGCLLMLF-GIHP---LLAYGLVGIGAAAYSPAKYGILTELL---PGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877766 5553 77899999999999999999999999 566788888888888899999999999999875
Q ss_pred cChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhccc
Q 008417 292 YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371 (566)
Q Consensus 292 ~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (566)
.|+..+.+.+...++..+..+.+||++.+++..+.+ .....++..+.....+++|.+.......++......
T Consensus 151 -~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (393)
T PRK11195 151 -HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWN-------PIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGA 222 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCC-------HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence 488888777766555555566777765322111100 000111222233455677765544433322222211
Q ss_pred chhhh-HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccc
Q 008417 372 SDSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGIS 450 (566)
Q Consensus 372 ~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (566)
..... ..+..+.+|.++.+.|++.....++.+++.++.+++.||.++++.+..+.. .++..+.+.+.. +.
T Consensus 223 ~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~----- 293 (393)
T PRK11195 223 TLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH---SL----- 293 (393)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh---HH-----
Confidence 22222 233345579999999999999999999999999999999888877766643 333222221111 11
Q ss_pred cchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 451 DEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGM-EATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 451 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+......++.++..+....+..+.+++..|++. +|++.++.+...+++..++..+.+.+ +.+|...
T Consensus 294 --~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 360 (393)
T PRK11195 294 --LPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPV 360 (393)
T ss_pred --HHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCH
Confidence 111222223333444444555577777766654 79999999999999999999999865 5677765
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=228.56 Aligned_cols=357 Identities=18% Similarity=0.203 Sum_probs=234.4
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh----cchh-hhcccccCcCCCCCchHh-HH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI----KPLY-GFISDSLPLFGYRRRSYL-VL 207 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~----~~~~-G~lsDr~~~~G~grr~~~-~~ 207 (566)
+..++.+|+.+|+. ++..+.+|.++++ .|.+.+++|++ ++..+++.. +|++ ++.+|| +|||+.. +.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~-~~~~l~~~~~~l~~p~~~~~~~~~-----~g~r~~~i~~ 75 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFL-PLVGLPWVVKFLWAPLVDNWWSWR-----LGRRRSWVLP 75 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHH-HHHHHHHHHHHHHHHHHhcccccc-----CCcchhHHHH
Confidence 45678899999998 8888999999977 59999999998 333334444 5555 334555 4555554 44
Q ss_pred HHHHHHHHHHHHHhh--c-chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHH
Q 008417 208 SGLLGALSWSLMATI--V-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF 284 (566)
Q Consensus 208 ~~~~~~~~~~~~~~~--~-~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 284 (566)
..++..+....++.. . ....+++...++.++..+..++..+++..|.. ++++++...+....+..+|.++|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~---~~~~~~~~~~~~~~g~~lG~~~g~~~ 152 (390)
T TIGR02718 76 MQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHF---NGRTLAKGNAVQIAGVMIGFFGGGAG 152 (390)
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333311 2 22334455566666777888888888877777 44444555666666667899999988
Q ss_pred HhHhhcccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHH
Q 008417 285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF 364 (566)
Q Consensus 285 ~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (566)
.+++.+.+|||..|++.+++.++..+..++++|+++++++ ..++..+++++.+|+|.++..+...+
T Consensus 153 ~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~ 218 (390)
T TIGR02718 153 TLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPE--------------APLARRASLFRFFRRPLAWSLLALAL 218 (390)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc--------------cchhhHHHHHHHHcCcCHHHHHHHHH
Confidence 8899999999999999998887744444455443221110 01112345667888888877776666
Q ss_pred HHhhcccchhhhHHHHhhccCCChhhhhHHHHHHH-HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcc
Q 008417 365 LWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTS-VASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGL 443 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (566)
++.........+...+.++.|+++++.|++..... +..+++.++.|++.||+|+++.+..+.++..+..+........+
T Consensus 219 l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 298 (390)
T TIGR02718 219 LSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW 298 (390)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66665555555666667778999999999987765 56778889999999999999988877665533322222111111
Q ss_pred ccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCC-CchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 444 NRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPE-GMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 444 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
. ............+..+..+.......+...+..++ +.+|+.+++.+++.++|..++|.++|.+++..|+..
T Consensus 299 ~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~ 371 (390)
T TIGR02718 299 L----APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAG 371 (390)
T ss_pred c----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 0 00001111212222222333333444566666665 899999999999999999999999999999988644
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=236.14 Aligned_cols=356 Identities=13% Similarity=0.139 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHhhhhhhhhH-HHHHHhhc--CCCHHHHHHHHH--Hhhhhh---hh-cchhhhcccccCcCCCCCchHhH
Q 008417 136 FAVAMVYFVQGVLGLARLAV-NFYLKDDL--HLDPAETAVISG--FSSLPW---LI-KPLYGFISDSLPLFGYRRRSYLV 206 (566)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l-~~~l~~~~--g~s~~~~g~~~s--~~~~~~---~~-~~~~G~lsDr~~~~G~grr~~~~ 206 (566)
...++..+.+++.......+ +..+.+++ +.++. .+++.+ .+.+++ .+ +++.|+++|| +|||+.++
T Consensus 25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-----~Grr~~l~ 98 (438)
T PRK09952 25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-----LGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hccHHHHH
Confidence 33444555566653333333 34555555 67666 455432 223333 33 4567999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcchHH--------HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHH
Q 008417 207 LSGLLGALSWSLMATIVESKY--------SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGG 278 (566)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (566)
++.++++++.+++++ ++++. .++++|+++|++.+...+....++.|++ ++++|+...+....+..+|.
T Consensus 99 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~---p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 99 LTVWMMGIATALIGL-LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA---PKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC---CCCCCcHHHHHHHHHHHHHH
Confidence 999999999999998 88876 5889999999999999888889999999 55567777777777777888
Q ss_pred HHHHHHHhHhh--------cccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHH
Q 008417 279 IVSSYFSGSMV--------DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEA 350 (566)
Q Consensus 279 ~~g~~~~~~l~--------~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (566)
+++..+...+. ..+|||++|++.+++.++.......+||++++.+.+++.++. +.+ .......
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~-------~~~--~~~~~~l 245 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA-------KKR--IPVIEAL 245 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-------ccc--CCHHHHH
Confidence 88777666554 257999999998877655544445567765432211110000 000 0011123
Q ss_pred hcccchhHHHH-HHHHHhhcccchhhhH-HHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 008417 351 VKQPNVFLPTL-FVFLWQATPHSDSAMF-YFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF 428 (566)
Q Consensus 351 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~ 428 (566)
+++++.+.... ..++..........+. .+..+.+|++......+....++..+++.++.|++.||+++|+.+..+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~ 325 (438)
T PRK09952 246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALI 325 (438)
T ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45555554432 2222222222223333 333456788887665555666777888889999999999999988777665
Q ss_pred HHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHH-hhhhhhHhHH
Q 008417 429 GTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSIS-NGGSVLGGLL 507 (566)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~i~~~~ 507 (566)
..+..+.+.......+.. .......++.++..+.......++..|.+|++.|+++.|+.+.+. .+++.++|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i 399 (438)
T PRK09952 326 GTLSAFPFFMALEAQSIF------WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFI 399 (438)
T ss_pred HHHHHHHHHHHHHcCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 544333222211111100 111111122222222223333488899999999999999976664 4889999999
Q ss_pred HHHHHHhcC
Q 008417 508 GAGLTQLFG 516 (566)
Q Consensus 508 ~g~l~~~~g 516 (566)
.+++.+..+
T Consensus 400 ~g~l~~~~~ 408 (438)
T PRK09952 400 AAALVTYFG 408 (438)
T ss_pred HHHHHHhcC
Confidence 999988654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=231.97 Aligned_cols=348 Identities=12% Similarity=0.091 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHH
Q 008417 136 FAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL 214 (566)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~ 214 (566)
+.+++.++..+........+.+.+.+++|+|.++.+++.+.+.+++.+ +++.|+++|| +|||+.++.+.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-----~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 10 WISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-----IPLKRQLIFGFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHH
Confidence 334455555555433333334456677999999999999999888888 6788999999 9999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc-ccC
Q 008417 215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-AYG 293 (566)
Q Consensus 215 ~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g 293 (566)
+.+++++ +++++.+++.|++.|++.+...+...+++.|++ ++++|+...+.......+|..++|.+.+.+.. ..|
T Consensus 85 ~~~l~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g 160 (394)
T PRK03699 85 AVAGLMF-SHSLALFSIAMFVLGVVSGITMSIGTFLITHVY---EGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE 160 (394)
T ss_pred HHHHHHH-cchHHHHHHHHHHHHHhhHhhccchhHHhhhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999988 899999999999999999988888888999999 44567777777766667888999998887764 579
Q ss_pred hHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccch
Q 008417 294 VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSD 373 (566)
Q Consensus 294 wr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (566)
||+.|.+.+++.++..+..++.+. ++.+++++ +++ + . ..+ ...++.++...+..+++...+...
T Consensus 161 w~~~f~~~~~~~~~~~~~~~~~~~-p~~~~~~~-~~~-~------~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 224 (394)
T PRK03699 161 WYWVYACIGLVYVAIFILTLFSEF-PALGKHAP-KAD-K------P---VAK----EKWGIGVLFLAIAALLYILAQLTF 224 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-ccccccCc-ccc-C------c---ccc----ccCChHHHHHHHHHHHHHHHHHHH
Confidence 999999988877664433332221 11111100 000 0 0 000 011334444444444444433344
Q ss_pred hhhHHHHh-hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 374 SAMFYFTT-NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 374 ~~~~~~~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
..+.+.+. +.+|+++.+.+.+.....++.+++.++.+++.||+++|+.+.....+..+....+.. . .+..
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--~-~~~~------ 295 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN--T-DDPS------ 295 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH--c-CCch------
Confidence 45555555 567999999999999999999999999999999999998877666555443322221 1 1110
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+ .....+..++.....+....++..+..| +.++...+......++|..++|.+.|++.+..|+..
T Consensus 296 ~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~ 360 (394)
T PRK03699 296 H-LLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQA 360 (394)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchh
Confidence 1 1111122222222222222255666665 445778888889999999999999999999888654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=238.73 Aligned_cols=253 Identities=15% Similarity=0.063 Sum_probs=177.4
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
.....+.+.+++|++..+.+++.+.+.+++.+ +++.|+++|| +|||+++..+.++.+++.+++++ +++++.++
T Consensus 55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~G~r~~~~~~~~~~~~~~~~~~~-~~s~~~l~ 128 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-----YGPRYGSAFLLMLTAPAVFCMSL-VSSATGFI 128 (476)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChHHHHHHHHHHHHHHHHHHH-hcCHHHHH
Confidence 34444566788999999999998888888887 6788999999 99999999999999999888888 88999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh----c-----ccChHHHHHHH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV----D-----AYGVRFVFGVT 301 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~----~-----~~gwr~~f~i~ 301 (566)
++|++.|++.+... ....++.+++ ++++|+.+.++.....++|..+++.+.+.+. + ..|||+.|++.
T Consensus 129 ~~r~l~G~~~~~~~-~~~~~i~~~~---~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 129 AVRFFIGFSLATFV-SCQYWMSTMF---NGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHhc---ChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 99999999987643 4556788999 6677888888887666677777766655442 1 25899999999
Q ss_pred HHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh-HHHH
Q 008417 302 ALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFT 380 (566)
Q Consensus 302 ~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 380 (566)
+++.++..+..++++++++....++.+++.+ .+.+...+.+++.++++++|...+..++..........+ ..++
T Consensus 205 g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 279 (476)
T PLN00028 205 GLLHIIMGILVLTLGQDLPDGNYRELKKSGT-----MPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYF 279 (476)
T ss_pred HHHHHHHHHHHHHHcCcCCCCchhhHHhcCc-----cccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9888774444444443222111000000000 000111234556677888766554433322221122233 3333
Q ss_pred hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 008417 381 TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR 419 (566)
Q Consensus 381 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~ 419 (566)
.+.+|+++..++.+..+..++.+++.++.|+++||+++|
T Consensus 280 ~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 280 YDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 456799999999999999999999999999999999865
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-26 Score=228.92 Aligned_cols=325 Identities=14% Similarity=0.125 Sum_probs=230.0
Q ss_pred HHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 008417 158 YLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLG 236 (566)
Q Consensus 158 ~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 236 (566)
.+++++|.+..+++++.+++.+++.+ ++++|+++|| +|||+.++.+.++..++.+.+.+ .++++.+++.|++.
T Consensus 31 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~ 104 (401)
T PRK11043 31 AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-----YGRKPVLLAGLSLFALGSLGMLW-VESAAQLLVLRFVQ 104 (401)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-----cCCcHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 35577999999999999999999887 6888999999 99999999999999999888888 89999999999999
Q ss_pred HHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhheeec
Q 008417 237 SLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVK 316 (566)
Q Consensus 237 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~ 316 (566)
|++.+...+...+++.|++ +++++++.++.......+|..++|.+++++.+.+|||+.|++.+++.++..+..++++
T Consensus 105 G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (401)
T PRK11043 105 AVGVCSAAVIWQALVIDRY---PAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLK 181 (401)
T ss_pred HhhhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcC
Confidence 9998888777788899998 5556667777777777889999999999999999999999999888777554444555
Q ss_pred cccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHH
Q 008417 317 EQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKF 396 (566)
Q Consensus 317 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 396 (566)
|++++++ + ++..++.++.++++..+...+...+..........+.+.+.++.|+++.+.|+...
T Consensus 182 ~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~ 245 (401)
T PRK11043 182 PSKKARK--Q--------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYV 245 (401)
T ss_pred CCCCccc--c--------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHH
Confidence 5432111 0 01123455667777765544332222222222233344555678999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-H
Q 008417 397 VTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-V 475 (566)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 475 (566)
...++.+++.++.+++.||+++++......+...+..+.+.+......... +.......+.+ .......|.. .
T Consensus 246 ~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~ 319 (401)
T PRK11043 246 PQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSL-----VPLLIPFCVMA-AANGAIYPIVVA 319 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcH-----HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 888899999999999999999888766655555444433322211110000 11111111112 2222233333 4
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 476 LAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 476 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
...+..| +.+|++.|+.++....+..+++.+.|.+.+.
T Consensus 320 ~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 320 QALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5555555 6799999999999988889999998888763
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-27 Score=236.50 Aligned_cols=352 Identities=13% Similarity=0.023 Sum_probs=230.5
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh---cchHHH
Q 008417 153 LAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI---VESKYS 228 (566)
Q Consensus 153 ~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~ 228 (566)
....+++++ +|++..+.+++.+++.+++.+ +++.|+++|| +|||++++.+.++.+++.+.++.. ..+++.
T Consensus 47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (438)
T TIGR00712 47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAI 120 (438)
T ss_pred HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-----cCCceehHHHHHHHHHHHHHHhccccccchHHH
Confidence 344567766 599999999999999888887 6788999999 999999999999988888877651 246677
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh-cccChHHHHHHHHHHHHH
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV-DAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~gwr~~f~i~~i~~~~ 307 (566)
+++.|++.|++.+...+.....+.|++ ++++|+...++.+.+..+|..+++.+.+.+. ...|||+.|++.+++.++
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~---~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i 197 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWW---SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII 197 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhc---CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888999999999988888888899999 6677888999888888899999887776544 457999999999888777
Q ss_pred -HHHhheeeccccccCCCcCCC---CCC-CCCccccchHHHHHHH--HHHhcccchhHHHHHHHHHhhcccchhhhHHHH
Q 008417 308 -TSGVAVLVKEQQVLGPSRRQN---LPL-GDPSFFESSKQNMFQL--WEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFT 380 (566)
Q Consensus 308 -~~~~~~~~~e~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (566)
.++..+++||+++....++.+ .+. ++.....+.+...++. ...++++.++...+..++..........+.+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (438)
T TIGR00712 198 VALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTY 277 (438)
T ss_pred HHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455566677765432111000 000 0000000000011111 135778877777655444433333333444444
Q ss_pred hh-ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHH-hhhccccccccccchhhhhH
Q 008417 381 TN-ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVF-LVTGLNRKFGISDEWFAIGD 458 (566)
Q Consensus 381 ~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~ 458 (566)
.+ ..|+++.+.++...+..++.+++.++.+++.||+++++....+..+..+..+.... ........ +.....
T Consensus 278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 351 (438)
T TIGR00712 278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNP------LVDMIC 351 (438)
T ss_pred HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCch------HHHHHH
Confidence 44 47999999999999999999999999999999996544333333222221111111 11110000 101011
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhh-hhHhHHHHHHHHhcCCCC
Q 008417 459 SLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGS-VLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~-~i~~~~~g~l~~~~g~~~ 519 (566)
.+..+...............+..|++.+|++.|+.+...++++ +++|.+.|.+.+..|+..
T Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~ 413 (438)
T TIGR00712 352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 413 (438)
T ss_pred HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchH
Confidence 1111111111111111456788999999999999999988875 689999999999888654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=231.41 Aligned_cols=357 Identities=19% Similarity=0.193 Sum_probs=258.8
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
+.+..++...+...+. .+....++.++. ++.-|+..++++.....++..+ +++.|.++|| ++||++++.+.+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-----~drrrili~~~~ 83 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-----FDRRRILILSQL 83 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----ccchHHHHHHHH
Confidence 3355566666666665 344445555554 4678999999999999999876 8999999999 999999999998
Q ss_pred HHHHHHHHHHhh----cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHh
Q 008417 211 LGALSWSLMATI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286 (566)
Q Consensus 211 ~~~~~~~~~~~~----~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 286 (566)
+.++..+.+++. ..+.+.+++..++.|++.++..++..+++.++.+ +++...++++.....++..++||.++|
T Consensus 84 ~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~---~~~L~~A~al~s~~~niar~iGPalgG 160 (524)
T PF05977_consen 84 LRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP---KEDLPAANALNSISFNIARIIGPALGG 160 (524)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---HhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 876655554432 3567889999999999999999999999999994 445555666666666999999999999
Q ss_pred HhhcccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcc-cchhHHHHHHHH
Q 008417 287 SMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQ-PNVFLPTLFVFL 365 (566)
Q Consensus 287 ~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 365 (566)
.++..+|-.++|.+.++..++.++..+.++.+..+.+..+ ++..+.+++-++..++ |.+...++..++
T Consensus 161 ~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~-----------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~ 229 (524)
T PF05977_consen 161 ILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPR-----------ERFFSALREGLRYVRSSPPLRSVLLRSFL 229 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch-----------hhhhhhHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999998877765544444443322111110 1233444555555554 444444444445
Q ss_pred HhhcccchhhhHHHHh-hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccc
Q 008417 366 WQATPHSDSAMFYFTT-NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLN 444 (566)
Q Consensus 366 ~~~~~~~~~~~~~~~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (566)
+.+........++.+. +.+|.++..+|++.+..++|+++|+++.+++.+|+++++++..+.++.+++.+.+.+....+
T Consensus 230 ~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~- 308 (524)
T PF05977_consen 230 FNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFW- 308 (524)
T ss_pred HHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHH-
Confidence 5544333344444444 45799999999999999999999999999999999988888888777776655544433221
Q ss_pred cccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 445 RKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 445 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
......++.+...........+.+++.+|++.+|++++++.++...+..+|..+.|.+.+.+|...
T Consensus 309 ---------~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~ 374 (524)
T PF05977_consen 309 ---------LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRT 374 (524)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 222222333333334444444888999999999999999999999999999999999999988754
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=229.93 Aligned_cols=347 Identities=12% Similarity=0.069 Sum_probs=236.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
+..+..++|..++.......+.|.+++++|++..+.|+..+.+.+++.+ +++.|+++|| +|||+.+..+.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-----~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-----LSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHH
Confidence 4556666777777755555556677889999999999999999999988 7888999999 999999999999999
Q ss_pred HHHHHH---HhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 214 LSWSLM---ATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 214 ~~~~~~---~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
++.+++ .. +++++.++++|+++|+|.+...+..+.++.|+. +++++....+.......+|..+|+.+++.+..
T Consensus 103 ~~~~l~~~~~~-a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~---~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~ 178 (438)
T PRK10133 103 LGAALFWPAAE-IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG---PESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998775 34 789999999999999999999999999999876 33344444666777778999999988775430
Q ss_pred -c-------------------------cChHHHHHHHHHHHH-HHH-HhheeeccccccCCCcCCCCCCCCCccccchHH
Q 008417 291 -A-------------------------YGVRFVFGVTALLPL-ITS-GVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQ 342 (566)
Q Consensus 291 -~-------------------------~gwr~~f~i~~i~~~-~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (566)
. .+||++|+....+.. +.+ +....+||.+.++. +++ +...
T Consensus 179 ~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~--~~~----------~~~~ 246 (438)
T PRK10133 179 SNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH--SDA----------KQGS 246 (438)
T ss_pred cCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--ccc----------cccc
Confidence 0 256667765443333 322 22233444221100 000 1111
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHH--hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q 008417 343 NMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFT--TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK 420 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~ 420 (566)
..++.++.+++|.++...+..+++.........+...+ .+.+|+++.++++......++.+++.++.+++.||+++|+
T Consensus 247 ~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~ 326 (438)
T PRK10133 247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_pred hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 22344567888887766555555554433333333333 3457999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhh
Q 008417 421 IFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNG 499 (566)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~l 499 (566)
.+..+.++..+..+...+.. .. . . .....+.+ ++.....|.. +...+..|+ +.+++.++.. ...+
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~-~~---~--~-----~~~~~l~g-lg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~ 392 (438)
T PRK10133 327 VLAAYALIAMALCLISAFAG-GH---V--G-----LIALTLCS-AFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTII 392 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcC-Ch---H--H-----HHHHHHHH-HHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhc
Confidence 88877666654443332211 11 0 0 00111122 3334444444 677777664 4677777775 4557
Q ss_pred hhhhHhHHHHHHHHhcC
Q 008417 500 GSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 500 g~~i~~~~~g~l~~~~g 516 (566)
|+.++|.+.|.+.+..|
T Consensus 393 g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 393 GGGIVTPVMGFVSDAAG 409 (438)
T ss_pred cchHHHHHHHHHHHhcc
Confidence 88999999999999876
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=235.73 Aligned_cols=355 Identities=16% Similarity=0.150 Sum_probs=241.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHH
Q 008417 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSW 216 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~ 216 (566)
....++..++.........+++.+++|.+..+.+++.++..++..+ +++.|+++|| +|||+++..+.++..++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~~~~~~~~~~~~~~~~ 96 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-----IGRKRVLLWSILLFSVFT 96 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----hhhHHHHHHHHHHHHHHH
Confidence 3344455555433344445566677999999999999998888777 6788999999 999999999999999998
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHH
Q 008417 217 SLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRF 296 (566)
Q Consensus 217 ~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~ 296 (566)
+++.+ .++++.+++.|++.|++.+...+...+++.|++ ++++|+...++...+..+|..+++.+++.+.+..||++
T Consensus 97 ~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~ 172 (398)
T TIGR00895 97 LLCAL-ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA---PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRS 172 (398)
T ss_pred HHHHH-ccchHHHHHHHHHHhcccccchhhHHHHHHHHc---CHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccccee
Confidence 88888 899999999999999999999999999999999 55677888888888889999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHhheeeccccccCCCcCCCC--------------CCC-CCccccchHHHHHHHHHHhcc----cch
Q 008417 297 VFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNL--------------PLG-DPSFFESSKQNMFQLWEAVKQ----PNV 356 (566)
Q Consensus 297 ~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~----~~~ 356 (566)
.|++.+++.++ .++..+++||+++....++++. +.+ .....+..++..++.++.+++ +..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (398)
T TIGR00895 173 LFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARIT 252 (398)
T ss_pred ehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHH
Confidence 99998766555 5555566777643211110000 000 000000001111222222222 222
Q ss_pred hHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHH
Q 008417 357 FLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ 436 (566)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 436 (566)
+...+..++..........+.+++.++.|+++.+.+.......++.+++.++.+++.||+++|+. .....+..+....+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 331 (398)
T TIGR00895 253 VLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT-ALLLLLGAVFAVLV 331 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHH
Confidence 22222222333323333344456667789999999999999999999999999999999998843 33333333333222
Q ss_pred HHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHH
Q 008417 437 VFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGL 511 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l 511 (566)
..... +. .......++.++..+.......+++.+.+|++.|+++.|+.+.+.++|..++|.++|.+
T Consensus 332 ~~~~~--~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 332 GSTLF--SP-------TLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHhh--CH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 22111 11 11112222333333334433448899999999999999999999999999999999875
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=230.15 Aligned_cols=328 Identities=14% Similarity=0.095 Sum_probs=229.3
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
.+.++.+. +++|++..+++++.+++.++..+ ++++|+++|| +|||+++..+.++..++.+.+.+ .++++.++
T Consensus 11 ~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 83 (377)
T PRK11102 11 LPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-----FGRKPVILGGTLVFALAAVACAL-AQTIDQLI 83 (377)
T ss_pred hccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-----cCChHHHHHHHHHHHHHHHHHHH-HccHHHHH
Confidence 34455555 56899999999999999888888 7788999999 99999999999999999999988 89999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-HH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-TS 309 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~~ 309 (566)
+.|++.|++.+...+...+++.|++ ++++|+...++.+....+|..++|.+++.+.+..|||+.|++.+++.++ .+
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMF---PKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 6667888888888888999999999999999989999999998887777 44
Q ss_pred HhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchh-hhHHHHhhccCCCh
Q 008417 310 GVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDS-AMFYFTTNELGFTP 388 (566)
Q Consensus 310 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 388 (566)
+..+++||+++.+++++ .+.++..++.++.++++..+..++..++......... ...+++.+..|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 229 (377)
T PRK11102 161 LVFFFIPETLPKERRQP-----------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSP 229 (377)
T ss_pred HHHHhCCccCcccccCC-----------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCH
Confidence 45556676543211110 0122334556667888877665544333322211111 22334556689999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhh
Q 008417 389 EFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQA 468 (566)
Q Consensus 389 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 468 (566)
.+.|.+.....++.+++.++.+++.||+|+|+.+..+..+..+..+.+..........+ ....+... .......
T Consensus 230 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~ 303 (377)
T PRK11102 230 QNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFW-----ALVVGVAA-FVGCVSM 303 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999888877665444333322211110000 01111111 1111111
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHh-hhhhhHhHH
Q 008417 469 SFMPVLVLAARLCPEGMEATLFATLMSISN-GGSVLGGLL 507 (566)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~i~~~~ 507 (566)
..........+..| +.++++.++.+.... ++..+++.+
T Consensus 304 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 304 ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 12222245556555 788999988776543 444444444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=228.89 Aligned_cols=350 Identities=14% Similarity=0.086 Sum_probs=233.1
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCC-CCchHhHHHHHHHHH
Q 008417 138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGY-RRRSYLVLSGLLGAL 214 (566)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~-grr~~~~~~~~~~~~ 214 (566)
++..+|..... +...+.+++++.+++|++..++|++.+++.++..+ ++++|.++|| + +||+++.++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-----~g~~r~~~~~~~~~~~~ 81 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-----WLSAQKVYAVCHFAGAL 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHH
Confidence 44444444444 56678889999898999999999999999888877 7899999999 6 558888888888878
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcc-----cCcccccchhHHHHHHhHHHHHHHHHHHhHhh
Q 008417 215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARG-----ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV 289 (566)
Q Consensus 215 ~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 289 (566)
+..+..+ .++++.+++.|++.|++.+...+..+++..+...+ .+...|.+.++ .+|.++|+.+++.+.
T Consensus 82 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~ 154 (418)
T TIGR00889 82 LLFFAAQ-VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD 154 (418)
T ss_pred HHHHHHH-hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc
Confidence 8777777 78899999999999998776666666554333210 01112333333 578899999998884
Q ss_pred cccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHH-HHHHHHHhcccchhHHHHHHHHHhh
Q 008417 290 DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQN-MFQLWEAVKQPNVFLPTLFVFLWQA 368 (566)
Q Consensus 290 ~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (566)
...+|+ +|++.++..++..+..+++||+++.+++++ . +.++. ..+..+.+|+|+++...+..++...
T Consensus 155 ~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~----------~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 222 (418)
T TIGR00889 155 IELSNI-QLYITAGSSALLGVFALTLPDIPVAKSTAK-M----------SIKVMLGLDAFILFKNKRMAIFFFFSMLLGA 222 (418)
T ss_pred ccchhH-HHHHHHHHHHHHHHHHhcCCCCCCCccccc-c----------CHHHHhhhhHHHHhcCCCeeeHHHHHHHHHh
Confidence 333354 455666666664455667787643211110 0 11111 1123456888887776666555444
Q ss_pred cccchhhhHHHHhhccCCCh--------hhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh
Q 008417 369 TPHSDSAMFYFTTNELGFTP--------EFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV 440 (566)
Q Consensus 369 ~~~~~~~~~~~~~~~~g~~~--------~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 440 (566)
.......+...+.++.|.++ ...+....+..+..+++.++.+++.||+|+|+.+..+.++..+..+.+....
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~ 302 (418)
T TIGR00889 223 PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD 302 (418)
T ss_pred HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333344444555555443 5668888899999999999999999999999999988887776654443321
Q ss_pred hccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHH-HHHhhhhhhHhHHHHHHHHhcCC
Q 008417 441 TGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLM-SISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
..+.. . +......++.++...........++.+..|++.+++++|+.+ ....+|..+||.++|.+.+..|.
T Consensus 303 ~~~~~---~---~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~ 374 (418)
T TIGR00889 303 PEYFG---Y---ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA 374 (418)
T ss_pred cchhh---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 11100 0 111112222222222222233378899999999999999997 56789999999999999998763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=232.59 Aligned_cols=354 Identities=15% Similarity=0.090 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHH-HHHh--hhhhh---h-cchhhhcccccCcCCCCCchHhHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVI-SGFS--SLPWL---I-KPLYGFISDSLPLFGYRRRSYLVL 207 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~-~s~~--~~~~~---~-~~~~G~lsDr~~~~G~grr~~~~~ 207 (566)
...+++..+.+.+.........+.+.++++.+..+.+.+ .+.. ...++ + +++.|+++|| +|||+.++.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-----~Grr~~l~~ 91 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-----VGRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-----hchHHHHHH
Confidence 444556667777765555555667778899877765543 2222 22232 3 5677999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcchHH--------HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHH
Q 008417 208 SGLLGALSWSLMATIVESKY--------SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGI 279 (566)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 279 (566)
+.++..++.+++++ +++++ .++++|+++|++.+...+....++.|++ ++++|+...++...+.++|..
T Consensus 92 ~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~---p~~~rg~~~~~~~~~~~~g~~ 167 (434)
T PRK15075 92 TLSIMASGTLLIAF-VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA---TPGRKGFYTSWQSASQQVAVV 167 (434)
T ss_pred HHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC---CcccchHHHHHHHHHHHHHHH
Confidence 99999999999998 88876 4689999999999988888889999999 667788888887777778888
Q ss_pred HHHHHHhHhh--------cccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHh
Q 008417 280 VSSYFSGSMV--------DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAV 351 (566)
Q Consensus 280 ~g~~~~~~l~--------~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (566)
+++.+++.+. +.+|||++|++..+...+........||+++...+++ + . +.++.++ ...
T Consensus 168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~-----~----~~~~~~~---~~~ 234 (434)
T PRK15075 168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-R-----P----SMREIFR---SLA 234 (434)
T ss_pred HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-c-----c----ccccHHH---HHH
Confidence 7777777653 4689999999865443323222223333321100000 0 0 1111111 123
Q ss_pred cccchhHHH-HHHHHHhhcccchhhhHHHHhh-ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 008417 352 KQPNVFLPT-LFVFLWQATPHSDSAMFYFTTN-ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG 429 (566)
Q Consensus 352 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~ 429 (566)
++++.+... ...++....+.....+.+.+.+ .+|++..+.++...+..++.+++.++.|++.||+++|+.+..+.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~ 314 (434)
T PRK15075 235 ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLA 314 (434)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 333333222 2222222222233444444444 47999999888888889999999999999999999999877665444
Q ss_pred HHHHhHHH-HhhhccccccccccchhhhhHHHHHHHhhhhhhHH-HHHHHHhhCCCCchHHHHHHHHHHHhh-hhhhHhH
Q 008417 430 TALGMTQV-FLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMP-VLVLAARLCPEGMEATLFATLMSISNG-GSVLGGL 506 (566)
Q Consensus 430 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~ 506 (566)
.+..+... ........ ........+..+..+ ...+ ...+..|..|++.|+++.|+.+.+... ++.++|.
T Consensus 315 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~ 386 (434)
T PRK15075 315 ILTAYPALSWLVAAPSF-------ARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPA 386 (434)
T ss_pred HHHHHHHHHHHHcCCch-------HHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHH
Confidence 32221111 11111100 000010111111222 2222 236788999999999999997665554 5788999
Q ss_pred HHHHHHHhcCCC
Q 008417 507 LGAGLTQLFGVT 518 (566)
Q Consensus 507 ~~g~l~~~~g~~ 518 (566)
+.|++.+..|..
T Consensus 387 ~~g~i~~~~g~~ 398 (434)
T PRK15075 387 ISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHhcCCc
Confidence 999999998754
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=233.70 Aligned_cols=362 Identities=14% Similarity=0.075 Sum_probs=226.9
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
++.+...++...+. +...+.++.|+++++|++..++|++.++..+++.+ +|++|+++|| +|||+.++++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-----~g~r~~~~~~~~~~ 86 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-----LGLKKHLLWIISGL 86 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHH
Confidence 44555555555554 56788889999998999999999999999888888 8899999999 99999998876665
Q ss_pred HHHHHHHHhh--cchHH-HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh
Q 008417 213 ALSWSLMATI--VESKY-SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV 289 (566)
Q Consensus 213 ~~~~~~~~~~--~~~~~-~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 289 (566)
+++...+... .+... ......++.++..+.........+.++.++. .++++..++......++|..++|.+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 165 (420)
T PRK09528 87 LVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV-SRRSGFEYGRARMWGSLGWALCAFIAGILF 165 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH-HhhccccchhhHHhhhHHHHHHHHHHHHHH
Confidence 5443322110 11110 1112223333333333333333344444322 234566677777777899999999999887
Q ss_pred cccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhc
Q 008417 290 DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQAT 369 (566)
Q Consensus 290 ~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (566)
+ .+|++.|++.+++.++.++..++++++++++...+++.+. ++.+...++.++.+++|.++...++.+.....
T Consensus 166 ~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~ 238 (420)
T PRK09528 166 N-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA------NASAVSLKDALALLKLPKFWFLVLYVIGVACF 238 (420)
T ss_pred h-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc------ccccccHHHHHHHccCCCeEeehHHHHHHHHH
Confidence 5 5899999998887777555554444333221111110000 01122345566778888876655443333222
Q ss_pred ccchhhhHHHHh----hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccc
Q 008417 370 PHSDSAMFYFTT----NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNR 445 (566)
Q Consensus 370 ~~~~~~~~~~~~----~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (566)
+.......+.+. .+.+.+..+.|.+..+..++.+++.++.+++.||+++|+.+..+.++..+..+++.+....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~-- 316 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPL-- 316 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHH--
Confidence 222222222222 22356667888999888899999999999999999999988887777766555443322211
Q ss_pred ccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHH-HHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 446 KFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFAT-LMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 446 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.......+.+............++.+..|++.+++.++. ++....+|..+++.+.|++.+..|+..
T Consensus 317 --------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~ 383 (420)
T PRK09528 317 --------EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQG 383 (420)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchH
Confidence 111112222222222223333777888999999988766 677889999999999999999988654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=240.20 Aligned_cols=365 Identities=15% Similarity=0.090 Sum_probs=243.4
Q ss_pred HHHhhcCCC---HHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 008417 158 YLKDDLHLD---PAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSI 233 (566)
Q Consensus 158 ~l~~~~g~s---~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 233 (566)
.+.++++++ ..+.++..+++.+++.+ ++++|+++|| +|||++++++.++..++.+++++ +++++.++++|
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-----~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~r 187 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-----FGRKKVLLLSTLVTAVSGVLTAF-SPNYTVFLVFR 187 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-----ccchHHHHHHHHHHHHHHHHHHH-cccHHHHHHHH
Confidence 455779998 99999999999999988 6788999999 99999999999999999999988 99999999999
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhhe
Q 008417 234 LLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAV 313 (566)
Q Consensus 234 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~ 313 (566)
++.|++.+...+....++.|++ ++++|+...++...+..+|.++++.+++.+.+ ||+.|++.++..++..+..+
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~---~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFL---PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HHHHhhccchHHHHHHHhheec---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 55667777777777778999999988876653 99999999988887666667
Q ss_pred eeccccccCCCcCCCCC------------CCCCc--c-----ccchHHH--HHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 314 LVKEQQVLGPSRRQNLP------------LGDPS--F-----FESSKQN--MFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 314 ~~~e~~~~~~~~~~~~~------------~~~~~--~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
++||++++...+.+.++ ..... . .++..+. ....++++++|.++...+...+..+....
T Consensus 262 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
T TIGR00898 262 FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341 (505)
T ss_pred hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 88998764211111000 00000 0 0000000 01345667777766655443332221111
Q ss_pred hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
.......+...++.+. .......++..+++.++.+++.||+|||+.+.++.++.+++.+.+.+..... .
T Consensus 342 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~------- 410 (505)
T TIGR00898 342 SYYGLVLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-Y------- 410 (505)
T ss_pred HHHHHhccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-h-------
Confidence 1111222233344443 2333456677888999999999999999998888877777665544332211 0
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHH
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILC 532 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 532 (566)
+......++..+.....+...+.+..|.+|++.|+++.|+.+.+..+|+.++|.+.+ +.+. +... .+.+.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-~~~~--------~~~~~ 480 (505)
T TIGR00898 411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-WLFL--------PLVLF 480 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-HHhh--------HHHHH
Confidence 111111122222233333344478899999999999999999999999999999988 4432 2111 12222
Q ss_pred HHHHhhhhhhhccCCCCCCCCCc
Q 008417 533 NLSSLLPLPLIGLLPQDSPDSTS 555 (566)
Q Consensus 533 ~~~~~i~~~~~~~~~~~~~~~~~ 555 (566)
+++.++..+...++|+++++..+
T Consensus 481 ~~~~~~~~~~~~~lpet~~~~l~ 503 (505)
T TIGR00898 481 GGLALLAGILTLFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHHHHHcCcCCCCCCCC
Confidence 22223333334467877765543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=223.24 Aligned_cols=339 Identities=16% Similarity=0.076 Sum_probs=231.4
Q ss_pred HHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCc----hHhHHHHHHHHHH
Q 008417 142 YFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRR----SYLVLSGLLGALS 215 (566)
Q Consensus 142 ~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr----~~~~~~~~~~~~~ 215 (566)
+|...+. +...+.++.++++ +|.|..++|++.+++.++..+ +|++|+++|| +||| +.+.++..+. .
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~--~ 84 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-----PSQLIPALRLLALLTLLF--A 84 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-----hcchHHHHHHHHHHHHHH--H
Confidence 3333343 5567778888855 799999999999999888777 8899999999 7873 3332222221 1
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChH
Q 008417 216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR 295 (566)
Q Consensus 216 ~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr 295 (566)
...... .++++.+++.|++.|++.+...+...++..++.+ +|+..++......++|.++||.+++++.+++|||
T Consensus 85 ~~~~~~-~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~-----~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~ 158 (382)
T PRK11128 85 VAFWFG-AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK-----QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQ 158 (382)
T ss_pred HHHHHh-cccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh-----hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 222233 6889999999999999988888887777777641 2444555566666899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhh
Q 008417 296 FVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSA 375 (566)
Q Consensus 296 ~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (566)
..|++.++..++.++..++.||++++.++++ +.++..++.++.+|+|.++..++..++..........
T Consensus 159 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 226 (382)
T PRK11128 159 AILWILTAGVASMLLGQLLRPTIMPQGESRQ------------QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYG 226 (382)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCcccccc------------ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHH
Confidence 9999888655554444444454322111100 0001123456778898888777665555554444445
Q ss_pred hHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhh
Q 008417 376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFA 455 (566)
Q Consensus 376 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (566)
+...+.++.|+++.+.|.+.....++.++..++.+++.||+++++.+..+.+..++..+.+...... +..
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~ 296 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTAL----------PWL 296 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhH----------HHH
Confidence 5555667789999999999998889999999999999999999999888877776655443322211 112
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHH-HHhhhhhhHhHHHHHHHHhcCC
Q 008417 456 IGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMS-ISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 456 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
....++.++...........+..+. +++++++..++.+. ...+|..+|+.++|.+.|.+|.
T Consensus 297 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 297 IVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 2223333333333333333666665 55667888998874 4566778999999999998864
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=223.38 Aligned_cols=329 Identities=19% Similarity=0.198 Sum_probs=226.7
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcchhhhccccc--CcCCCCCchHhHHHHHHHHHHHHHHHhhc---chH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGLLGALSWSLMATIV---ESK 226 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~--~~~G~grr~~~~~~~~~~~~~~~~~~~~~---~~~ 226 (566)
...++.+++ ++|+|.+++|+.... .+++.+++++|+++||+ +++| +||++++.+.++.++..+.+++ . .+.
T Consensus 8 ~~~~~~~~~-~~g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~G-rr~~~l~~~~~~~~~~~~~l~~-~~~~~~l 83 (356)
T TIGR00901 8 GNTLPYWLR-SKNVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFG-RRRSWLVLTQVLLLSLLLILSF-LVPSTDL 83 (356)
T ss_pred HhHHHHHHH-HcCCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCC-ccHHHHHHHHHHHHHHHHHHHc-CCcchhH
Confidence 445555554 579999999999644 56666799999999995 3345 5555677888888887777766 4 456
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC--------hHHHH
Q 008417 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG--------VRFVF 298 (566)
Q Consensus 227 ~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------wr~~f 298 (566)
+.+....++.+++.+...++..+++.|++ ++++|+.+.++...+..+|.++++.+++.+.+..| ||..|
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEIL---SDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 66777888889999999999999999999 55667888888888889999999999999988888 99999
Q ss_pred HHHHHHHHHHHHhhe-eeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccc---hhHHHHHHHHHhhcccchh
Q 008417 299 GVTALLPLITSGVAV-LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPN---VFLPTLFVFLWQATPHSDS 374 (566)
Q Consensus 299 ~i~~i~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 374 (566)
++.+++.++.++..+ ..||+++.++. ++ +..++....+.+.++++. ++...+..+++........
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEPQEDASV-PK----------PLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAAT 229 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccc-ch----------hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 999987777544444 45664321111 00 011122234445566665 5555555555555554555
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHH-HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccc-cccccccc
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTS-VASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLN-RKFGISDE 452 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 452 (566)
.+.+.+.+++|+++.+.+.+....+ ++.+++.++++++.||+|+|+.+..+.++..+....+.+...... ...+....
T Consensus 230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 5556666669999999998887655 678899999999999999999888887777665544433221110 00000111
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHh
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISN 498 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 498 (566)
+......++.++..+.......+++.+.+|++++|+++|+.++..+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2223333333444455555555999999999999999999887765
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=223.02 Aligned_cols=325 Identities=21% Similarity=0.247 Sum_probs=250.8
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHH
Q 008417 138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS 215 (566)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~ 215 (566)
+....+...+. .......+.+. +++|.+..+.+++.+...++..+ ++++|+++|| +|||+.+..+.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-----~g~r~~~~~~~~~~~~~ 77 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-----FGRRRVLLLGLLLFALG 77 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchhhHHHHHHHHHH
Confidence 33445555554 34455555555 55799999999999999888777 7899999999 99999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChH
Q 008417 216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR 295 (566)
Q Consensus 216 ~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr 295 (566)
.+.+.. .++++.+++.|++.|++.+...+...+++.|++ ++++|+..+++......+|..+++.+++.+.+..+||
T Consensus 78 ~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 153 (352)
T cd06174 78 SLLLAF-ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF---PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153 (352)
T ss_pred HHHHHH-hccHHHHHHHHHHHHcccccccHhHHHHHHHhC---CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999988 899999999999999999999999999999999 5567778888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhh
Q 008417 296 FVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSA 375 (566)
Q Consensus 296 ~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (566)
+.|++.+++.++..+..++++ |.++...+..++..........
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 196 (352)
T cd06174 154 WLFLILAILGLLLALLLLFLL-------------------------------------RLLLLLALAFFLLSFGYYGLLT 196 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHhHHHHHHH
Confidence 999999888777544444333 2333444444444443334444
Q ss_pred hHHHHhhc-cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcch-hhHHHHHHHHHHHhHHHHhhhccccccccccch
Q 008417 376 MFYFTTNE-LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK-IFLANTIFGTALGMTQVFLVTGLNRKFGISDEW 453 (566)
Q Consensus 376 ~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (566)
+.+.+.++ .|.+..+.+.......++.+++.++.+++.||+++|+ .+..+..+..++.+.+...... +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~ 266 (352)
T cd06174 197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL----------A 266 (352)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH----------H
Confidence 44444444 4889999999999999999999999999999999998 8888877777766555433221 1
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 454 FAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.......+.+............+..+..|+++|++.+|+.+...+++..+++.+.|.+.+..++..
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~ 332 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG 332 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence 122222333333333444444899999999999999999999999999999999999998776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=226.88 Aligned_cols=344 Identities=16% Similarity=0.160 Sum_probs=231.0
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhccccc-CcCCCCCchHhHHHHHHHHHHHHHHHhhcch-
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLMATIVES- 225 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~-~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~- 225 (566)
......+++|+++++|++..++|.+.++..+..++ +|+.|.++||+ +|+| +||++++.+.+..+++.+++.. .++
T Consensus 26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-rrrp~il~~~~~~~i~~~l~f~-~p~~ 103 (444)
T PRK09669 26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-QFRPYLLWFAIPFGVVCLLTFY-TPDF 103 (444)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC-CcchhHHHHHHHHHHHHHHHHh-CCCC
Confidence 44466778899999999999999999888665555 89999999998 6899 8999999998888877766554 432
Q ss_pred -----HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc-------ccC
Q 008417 226 -----KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-------AYG 293 (566)
Q Consensus 226 -----~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g 293 (566)
..++++..++.+++.+...++..++.+|+.++ .++|..+.+....+..+|..+++.+...+.. ..|
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~--~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g 181 (444)
T PRK09669 104 GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND--PRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG 181 (444)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 35556667777888888888889999999843 3456777777777777887777765544432 347
Q ss_pred hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 294 VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 294 wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
|+..+.+.+++.++ .++..+..+|+..+++ + +..+..++++..++||.++..++..+++......
T Consensus 182 ~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~--~------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~ 247 (444)
T PRK09669 182 YFYAMMVMGLLGVVLFFCCFFMTKERYTPEV--D------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVT 247 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEecCCCC--c------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 88888888877766 4444555666433211 0 0112334566778998877776555544333323
Q ss_pred hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
......++.+..-.++...+.+.....+..+++.++++++.||+|+|+.+..+.++..+..+.+.+... .+.
T Consensus 248 ~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-~~~------- 319 (444)
T PRK09669 248 RGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP-SNV------- 319 (444)
T ss_pred HhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc-chH-------
Confidence 233333333332223444455556667888899999999999999999888776655544333322211 111
Q ss_pred hhhhhHHHHHHHhhhhhhHHHH-HHHHhhCC-------CCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 453 WFAIGDSLILTVLSQASFMPVL-VLAARLCP-------EGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+......++.++... ...+.. ++++|..+ ++.+|..+|+.+.+.++|.++|+.++|.+.+..|+..
T Consensus 320 ~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~ 393 (444)
T PRK09669 320 WLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVG 393 (444)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 111112222232333 333333 77777664 4567889999999999999999999999999999953
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=223.46 Aligned_cols=327 Identities=15% Similarity=0.050 Sum_probs=225.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 008417 156 NFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSIL 234 (566)
Q Consensus 156 ~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 234 (566)
.+.+.+++|++..+.+++.+.+.+++.+ ++++|+++|| +|||++++++.++..++.+.+.. .++++.+++.|+
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 104 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-----VGRRPVILVGMSIFILGTLVALF-AHSLTVLIAASA 104 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-----cCChHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHH
Confidence 3445577999999999999999999888 7888999999 99999999999999999888887 899999999999
Q ss_pred HHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-HHHhhe
Q 008417 235 LGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-TSGVAV 313 (566)
Q Consensus 235 l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~~~~~~ 313 (566)
+.|++.+...+....+..|.+ ++++++...+....+..+|..++|.+++.+.+..|||+.|++.+++.++ .++..+
T Consensus 105 ~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 105 IQGLGTGVGGVMARTLPRDLY---EGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred HHHhhhhHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999888777778888888 4556677777777778899999999999999889999999998877665 444455
Q ss_pred eeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh-HHHHhhccCCChhhhh
Q 008417 314 LVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTNELGFTPEFLG 392 (566)
Q Consensus 314 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g 392 (566)
++||+++.+++ ..+..+.+++.+++|..+..++..+............ ..++.+.+|+++.+.+
T Consensus 182 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 246 (394)
T PRK11652 182 WMPETRPADAR---------------RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVS 246 (394)
T ss_pred hCCccCccccc---------------hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHH
Confidence 66775432110 1112344556677877665554333322222122222 2233344899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHH
Q 008417 393 RVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMP 472 (566)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 472 (566)
+......++.+++..+.+++.||.+++.. .......+..+.+........ ...+.......+.+...+.....
T Consensus 247 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~ 319 (394)
T PRK11652 247 ILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPGWFGV-----MNVWTLLVPAALFFFGAGMLFPL 319 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99888889999999999999999873222 222222222222111110000 00011122222222233333333
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 473 VLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 473 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
..++..+..| +++|++.++.+....+|..+++.+++.+...
T Consensus 320 ~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 320 ATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3366777776 6789999999999999999999988877543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=227.11 Aligned_cols=362 Identities=12% Similarity=0.138 Sum_probs=236.6
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhh-hhhcchhhhccccc-CcCCCCCchHhHHHHHHHHH
Q 008417 138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLP-WLIKPLYGFISDSL-PLFGYRRRSYLVLSGLLGAL 214 (566)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~-~~~~~~~G~lsDr~-~~~G~grr~~~~~~~~~~~~ 214 (566)
..+..+..++. ......++.|+++.+|+++..+|.+..+.-+- .+..|++|.++||+ +||| +||++++.+.+..++
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G-rrrp~il~g~i~~~i 89 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG-KFKPWILIGTLANSV 89 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC-CcchhHhhhhHHHHH
Confidence 33344444443 55667788899999999999999998888444 44489999999997 7899 889999999999888
Q ss_pred HHHHHHhhcch------HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHh
Q 008417 215 SWSLMATIVES------KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM 288 (566)
Q Consensus 215 ~~~~~~~~~~~------~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 288 (566)
+.+++.. .++ +.++++..++.+++.+...++..++.+|+.+ +.++|..+.+....+.++|.++++.+...+
T Consensus 90 ~~~llf~-~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~--~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~ 166 (473)
T PRK10429 90 VLFLLFS-AHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL--DKREREQLVPYPRFFASLAGFVTAGFTLPF 166 (473)
T ss_pred HHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8766654 332 3345666677788899999999999999985 344667777766655566666655554433
Q ss_pred hc-------ccChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHH-HHHHhcccchhHH
Q 008417 289 VD-------AYGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLP 359 (566)
Q Consensus 289 ~~-------~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 359 (566)
.+ ..||+....+.+++.++ .++..+..+|.+.+...+.++ +.+...++ ++..++||.++..
T Consensus 167 ~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----------~~~~~~~~~~~~~~~n~~~~~l 236 (473)
T PRK10429 167 VNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE----------GSHLTLKDIVALIYKNDQLSCL 236 (473)
T ss_pred HHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc----------ccCCCHHHHHHHHhcCHHHHHH
Confidence 21 23577777777777666 444555567754321111100 01111222 3335678777776
Q ss_pred HHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHh
Q 008417 360 TLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFL 439 (566)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 439 (566)
++..+++.........+..++.+....+....+.+.....++.+++.++.+++.||+|+|+.+.++..+..++.+.+...
T Consensus 237 l~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~ 316 (473)
T PRK10429 237 LGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLM 316 (473)
T ss_pred HHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555444343444344444433356667777777778899999999999999999999887776655554443322
Q ss_pred hh-ccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCC-------CCchHHHHHHHHHHHhhhhhhHhHHHHHH
Q 008417 440 VT-GLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCP-------EGMEATLFATLMSISNGGSVLGGLLGAGL 511 (566)
Q Consensus 440 ~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~~~g~l 511 (566)
.. .... .+......++.++..+..+....++++|.++ ++..|..+|..+.+.+++.++++.+.|.+
T Consensus 317 ~~~~~~~------~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 317 GLAAPHN------ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred hccCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1110 0112222222333333333333367777754 56788899999999999999999999999
Q ss_pred HHhcCCCC
Q 008417 512 TQLFGVTK 519 (566)
Q Consensus 512 ~~~~g~~~ 519 (566)
.+..|+..
T Consensus 391 l~~~Gy~~ 398 (473)
T PRK10429 391 LGLIGYVP 398 (473)
T ss_pred HHHcCCCC
Confidence 99999854
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=232.70 Aligned_cols=334 Identities=11% Similarity=0.019 Sum_probs=225.3
Q ss_pred hcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHH
Q 008417 162 DLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI-VESKYSAALSILLGSLS 239 (566)
Q Consensus 162 ~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~g~~ 239 (566)
+++++..+.|++.+.+.+++.+ +++.|+++|| +|||+++..+.++..++.+++.+. ..+++.+++.|+++|++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-----YVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-----hCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 6899999999999999999988 7888999999 999999999999888887776541 35678899999999999
Q ss_pred HHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc-cChHHHHHHHHHHHHHHHHh-heeecc
Q 008417 240 VAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-YGVRFVFGVTALLPLITSGV-AVLVKE 317 (566)
Q Consensus 240 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gwr~~f~i~~i~~~~~~~~-~~~~~e 317 (566)
.+...+....++.|++ ++++|+...++...+..+|.++++.+++.+.+. .|||+.|++.+++.++..+. .++.+|
T Consensus 145 ~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 145 QGSVSPATHKIIVKWA---PPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred cccchhhHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999 667788999999988899999999999999988 49999999999888774444 444555
Q ss_pred ccccCCCcCCCCC------CCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHH-HHhhccCCChhh
Q 008417 318 QQVLGPSRRQNLP------LGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFY-FTTNELGFTPEF 390 (566)
Q Consensus 318 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~ 390 (566)
+++.++..+++++ .+++....+ ....+++.++++.++...+..+.+.........+.+ ++.+.+|++..+
T Consensus 222 ~p~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~ 298 (465)
T TIGR00894 222 DPSIHPCISKFEKKYINSSLQGQKGSTR---QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE 298 (465)
T ss_pred CcccCCCCCHHHHHHHHhhcccccCCCC---CCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence 4432211110000 000000000 011245667888887777666655554444444444 344567999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh--------HHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHH
Q 008417 391 LGRVKFVTSVASLLGVGLYNGFLKNVPLRKIF--------LANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLIL 462 (566)
Q Consensus 391 ~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 462 (566)
.|+...+..++.+++.++.|++.||+++|+.. ..+..........+.......+. ...+....+.
T Consensus 299 ~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~ 371 (465)
T TIGR00894 299 NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF-------YLTIIILTLA 371 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-------HHHHHHHHHH
Confidence 99999999999999999999999987644321 11111111111111111111110 1111111111
Q ss_pred HHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 463 TVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
................+..| +..|.+.|+.+....+++.++|.+.|.+.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 372 NAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 11111111111134445555 5899999999999999999999998888764
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=217.20 Aligned_cols=382 Identities=15% Similarity=0.138 Sum_probs=269.1
Q ss_pred hhcC--CCHHHHHHH----HHHhhhhhhhc-chhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh--cchHHHHHH
Q 008417 161 DDLH--LDPAETAVI----SGFSSLPWLIK-PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI--VESKYSAAL 231 (566)
Q Consensus 161 ~~~g--~s~~~~g~~----~s~~~~~~~~~-~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 231 (566)
+.+| .+..+..++ .+++.+|.+++ .+.|.++|| +|||..+++..++..++.+++.+. .+++..+++
T Consensus 47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~-----~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~ 121 (485)
T KOG0569|consen 47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR-----FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLIL 121 (485)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4456 566555544 45557777774 566999999 999999999988887776666553 678899999
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhH--hhcccChHHHHHHHHHHHHHHH
Q 008417 232 SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS--MVDAYGVRFVFGVTALLPLITS 309 (566)
Q Consensus 232 ~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~--l~~~~gwr~~f~i~~i~~~~~~ 309 (566)
+|++.|+..+.......-++.|.. |.+.||..-.+...+..+|.++|..++.. +-+.-.|++.+.+..+..++.+
T Consensus 122 GR~i~Gl~~gl~~~~~pmyl~E~s---P~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 122 GRLIVGLACGLSTGLVPMYLTEIS---PKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhcC---hhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 56667776666666667787777666543 2244569999999999999988
Q ss_pred HhheeeccccccCCCc-CCCCCC-------CCCc----cccc-----hHH-----HHHHHHHHhcccchhHHHH----HH
Q 008417 310 GVAVLVKEQQVLGPSR-RQNLPL-------GDPS----FFES-----SKQ-----NMFQLWEAVKQPNVFLPTL----FV 363 (566)
Q Consensus 310 ~~~~~~~e~~~~~~~~-~~~~~~-------~~~~----~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~----~~ 363 (566)
+...++||+|++.-.+ +++++. +..+ ..+. ..+ ....+++.++++....... ..
T Consensus 199 ~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~ 278 (485)
T KOG0569|consen 199 ALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVS 278 (485)
T ss_pred HHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHH
Confidence 8999999999874331 111110 0010 0000 000 1123567788776555432 22
Q ss_pred HHHhhc-ccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc
Q 008417 364 FLWQAT-PHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG 442 (566)
Q Consensus 364 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (566)
+...+. ......+.....++.|++..++.+.....++..++..+++.++.||.|||++++.+..++.+..+++.....-
T Consensus 279 ~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l 358 (485)
T KOG0569|consen 279 FAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFL 358 (485)
T ss_pred HHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 2223333344456679999999999999999999999999999999999999999988888777766443221
Q ss_pred cccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCcc
Q 008417 443 LNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDS 521 (566)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~ 521 (566)
.+.... -..+..+++.+.+...++.+..|+. .+.+|++|++.|..+.++...+..+...+-......+.+.+|-..
T Consensus 359 ~~~~~~-~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~-- 435 (485)
T KOG0569|consen 359 SNSFGS-WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYV-- 435 (485)
T ss_pred HHHhhh-HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--
Confidence 111000 0002345556666667777777877 889999999999999999999999999999999999999887522
Q ss_pred chhhHHHHHHHHHHHhhhhhhhccCCCCCCCCCccchh
Q 008417 522 FDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKESE 559 (566)
Q Consensus 522 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 559 (566)
++.+...+.+..+..++++||+|+|+.+|..+
T Consensus 436 ------filF~i~~~~~~i~~~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 436 ------FILFVIPLAIFLIYLYRYLPETKGRTPYEIIE 467 (485)
T ss_pred ------hHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence 22333333344456677899999988766544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-25 Score=212.76 Aligned_cols=362 Identities=18% Similarity=0.195 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHh-hhhhhhcchhhhccccc-CcCCCCCchHhHHHHHHH
Q 008417 136 FAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSL-PLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~-~~~G~grr~~~~~~~~~~ 212 (566)
+...+.-+..++. ......+..|+++.+|+++..+|.+..+. .+-....|+.|.++||+ +||| +|||+++.+.+..
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~G-rfRP~lL~g~ip~ 93 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWG-RFRPWLLWGAIPF 93 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccc-cccHHHHHHhHHH
Confidence 3344444555454 66777888899999999999999998777 45555599999999998 7899 9999999999999
Q ss_pred HHHHHHHHhhcc------hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHh
Q 008417 213 ALSWSLMATIVE------SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286 (566)
Q Consensus 213 ~~~~~~~~~~~~------~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 286 (566)
++...++.. ++ +....++...+.+++.+....+..++.+++++ +.++|.++.++...+..+|.++...+..
T Consensus 94 ~i~~~l~F~-~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~--d~~ER~~l~s~R~~~~~~g~~l~~~~~~ 170 (467)
T COG2211 94 AIVAVLLFI-TPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ--DPQERASLTSWRMVFASLGGLLVAVLFP 170 (467)
T ss_pred HHHHHHHHc-CCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888877 55 34566788899999999999999999999996 6678899999998888888777666665
Q ss_pred Hhhc-------ccChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHH-HHHHHHhcccchh
Q 008417 287 SMVD-------AYGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNM-FQLWEAVKQPNVF 357 (566)
Q Consensus 287 ~l~~-------~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 357 (566)
.+.. ..||+..-++.+++..+ .+.+++-.+|+..+....++ ..+..+ +.+...++||+.+
T Consensus 171 plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~-----------~~~~~~~~~~~~~~~Nrp~~ 239 (467)
T COG2211 171 PLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT-----------GVKLKLKDSFLLIFKNRPLL 239 (467)
T ss_pred HHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-----------cccccHHHHHHHHHccchHH
Confidence 5542 45788888888888777 45555667776653322211 122222 3344568888887
Q ss_pred HHHHHHHHHhhcccchhhh-HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHH
Q 008417 358 LPTLFVFLWQATPHSDSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ 436 (566)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 436 (566)
..++..++........... .|+....+|.+.....+.......+.+++.++.+++.+|+|+|+++.++.++..++.+++
T Consensus 240 ~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~ 319 (467)
T COG2211 240 LLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL 319 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 7776555544444443444 444445578788888888888888888889999999999999999999999998888887
Q ss_pred HHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhh-------CCCCchHHHHHHHHHHHhhhhhhHhHHH
Q 008417 437 VFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARL-------CPEGMEATLFATLMSISNGGSVLGGLLG 508 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~g~~~g~~~~~~~lg~~i~~~~~ 508 (566)
++... .+. .+.+...++.++.. ....+.. ++++|. ...+..|..+|...++..+|.+++..+.
T Consensus 320 ~f~~~-~~~-------~l~~~~~~i~~~g~-~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 320 YFTPA-GSV-------VLIVVALIIAGVGT-GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred HhhcC-cch-------HHHHHHHHHHHHHh-hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 76652 211 12222222222222 2222222 555554 3567899999999999999999999999
Q ss_pred HHHHHhcCCCCcc
Q 008417 509 AGLTQLFGVTKDS 521 (566)
Q Consensus 509 g~l~~~~g~~~~~ 521 (566)
|++.+..|+....
T Consensus 391 g~~L~~~Gyv~~~ 403 (467)
T COG2211 391 GWILGAIGYVPNV 403 (467)
T ss_pred HHHHHHcCCCCCc
Confidence 9999999997654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=216.39 Aligned_cols=348 Identities=11% Similarity=0.080 Sum_probs=240.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
++.++..+|..|+.......+.+.+++++|++..+.|++.+.+.+++.+ +++.|++.|| +|||+.++++.++.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-----~G~r~~~~~g~~l~~ 79 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-----LSYKAGILLGLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHH
Confidence 5566777788888744444445566788999999999999999999888 6788999999 999999999999999
Q ss_pred HHHHHHHhh--cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc-
Q 008417 214 LSWSLMATI--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD- 290 (566)
Q Consensus 214 ~~~~~~~~~--~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~- 290 (566)
++.+++... .++++.+++.|++.|+|.+...+..+.++.+..+ ++++++..++.+...++|..+|+.+++.+..
T Consensus 80 ~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 80 LGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGP---ESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988776431 4678999999999999999999999999999984 4445666777777778999999999887742
Q ss_pred -------------------------ccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHH
Q 008417 291 -------------------------AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMF 345 (566)
Q Consensus 291 -------------------------~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (566)
..+||++|++.+++.++..+...+.+.++.++++ +++ +..+ .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~-~~~---------~~~~---~ 223 (410)
T TIGR00885 157 NLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSD-AKQ---------ISFS---A 223 (410)
T ss_pred CCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccc---------ccch---h
Confidence 2469999999888776643333333322211110 000 0111 1
Q ss_pred HHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhcc--CCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q 008417 346 QLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNEL--GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFL 423 (566)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~ 423 (566)
+..+.+++|.++...+..++|.........++..|.++. +.+....+........+..+|.++.+++.||+++|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~ 303 (410)
T TIGR00885 224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLM 303 (410)
T ss_pred hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 233567888887777777777665544445555554443 444444455556666788899999999999999999887
Q ss_pred HHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhh
Q 008417 424 ANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVL 503 (566)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 503 (566)
+..++..+..++..+... . .......+.+.+....+...++...+..+++......++.... +|+++
T Consensus 304 i~~~~~~~~~ll~~~~~~-~----------~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~ 370 (410)
T TIGR00885 304 AYAIIGMALCLGSIFAGG-H----------VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGI 370 (410)
T ss_pred HHHHHHHHHHHHHHHcCC-h----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccch
Confidence 777766665554443211 1 0111111222234444433337888888876655455555443 99999
Q ss_pred HhHHHHHHHHhcC
Q 008417 504 GGLLGAGLTQLFG 516 (566)
Q Consensus 504 ~~~~~g~l~~~~g 516 (566)
.|.+.|.+.|..|
T Consensus 371 ~p~l~G~~~d~~~ 383 (410)
T TIGR00885 371 VPPLQGFIIDMKE 383 (410)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999653
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=223.22 Aligned_cols=325 Identities=15% Similarity=0.101 Sum_probs=218.8
Q ss_pred CCHHHHHHHHHHh--hhhh---hh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHH--------HHH
Q 008417 165 LDPAETAVISGFS--SLPW---LI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY--------SAA 230 (566)
Q Consensus 165 ~s~~~~g~~~s~~--~~~~---~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~ 230 (566)
.+..+.+.+.+.. ..++ .+ +++.|+++|| +|||+.++++.++..++.+++++ ++++. .++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 100 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-----IGRKKTLVITLLMMGIGTLLIGL-LPSYATIGIWAPILLL 100 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-----hhhHHHHHHHHHHHHHHHHHHhh-CCChhhhHHHHHHHHH
Confidence 4455555544432 3332 23 6788999999 99999999999999999999888 77764 478
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh--------cccChHHHHHHHH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV--------DAYGVRFVFGVTA 302 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~gwr~~f~i~~ 302 (566)
+.|+++|++.+...+....++.|++ ++++|+...+....+..+|.++++.++..+. +.++||+.|++.+
T Consensus 101 ~~r~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 177 (394)
T TIGR00883 101 LARLIQGFSLGGEWGGAALYLAEYA---PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSA 177 (394)
T ss_pred HHHHHHHhhccccccccHHHhhhcC---CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHH
Confidence 9999999999998889999999999 5667788888888888889999888876653 3578999999888
Q ss_pred HHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccc--hhHHHHHHHHHhhcccchhhhHHHH
Q 008417 303 LLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPN--VFLPTLFVFLWQATPHSDSAMFYFT 380 (566)
Q Consensus 303 i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (566)
++.++..+....++|+++.+.++++++ + ..++.++.+++++ ++......++..........+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (394)
T TIGR00883 178 VLVLIGLYLRRNLEETPVFEKAQEKHK---------K---KRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTY 245 (394)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHhccc---------c---ccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665555555666554322111110 0 0112233344443 4444444444333333334444444
Q ss_pred h-hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHH
Q 008417 381 T-NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDS 459 (566)
Q Consensus 381 ~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 459 (566)
. +++|.++.+.+.......++.+++.++.+++.||+++|+.+.....+..+..+........... .+......
T Consensus 246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 319 (394)
T TIGR00883 246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGS------FTLFFFLV 319 (394)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCc------hHHHHHHH
Confidence 4 6678999999999999999999999999999999999987765554443333221111111110 01122222
Q ss_pred HHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHH-HHHHhhhhhhHhHHHHHHHHhcC
Q 008417 460 LILTVLSQASFMPVLVLAARLCPEGMEATLFATL-MSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
++.+........+..+++.|.+|++.|+++.++. +....+|..++|.++|.+.+..|
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 3333333344444458899999999999999985 44556788899999999999887
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=220.79 Aligned_cols=347 Identities=15% Similarity=0.103 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHH-HHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 136 FAVAMVYFVQGVLGLARLAVNF-YLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~-~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
+..+..++..........++.+ ++++++|++..+.+++.+++.+++.+ +++.|+++|| +|||+.++++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~ 78 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-----FGPRYTTTLSLLLLA 78 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHH
Confidence 3344445444444333444444 68889999999999999999998888 6788999999 999999999999999
Q ss_pred HHHHHHHhhcc-hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc--
Q 008417 214 LSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-- 290 (566)
Q Consensus 214 ~~~~~~~~~~~-~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-- 290 (566)
++.+++++ .+ +++.+++.|++.|++.+.. .....++.|++ ++++|+...++.....++|..+++.+++.+..
T Consensus 79 i~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 79 IPCLWAGL-AVQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFF---PKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhc---CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999988 78 9999999999999986654 55678899999 55667777777776667788777777766654
Q ss_pred --------ccChHHHH-HHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHH
Q 008417 291 --------AYGVRFVF-GVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPT 360 (566)
Q Consensus 291 --------~~gwr~~f-~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (566)
..+||+.| ++.+++..+ .++..++.+|.++.++++++. +.+. ......++..++.++.+++|+++...
T Consensus 154 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T TIGR00886 154 IFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKL-SFKG-ARWSVGTGALGDQLKVFRDRHTWILA 231 (366)
T ss_pred HhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhc-cccc-ccccccchhHHHHHHHHhccchhhHH
Confidence 34899999 444544444 444445556554322111110 0000 00001112223556678888877666
Q ss_pred HHHHHHhhcccchhhhHH-HHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHh
Q 008417 361 LFVFLWQATPHSDSAMFY-FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFL 439 (566)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 439 (566)
+..++..........+.+ +..+.+|+++.+.+.+..+..+..+++.++.+++.||+++|+.+..+.+....+...+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 311 (366)
T TIGR00886 232 LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLG 311 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhc
Confidence 554443333323333333 3345579999999988888899999999999999999999887777666555544433322
Q ss_pred hhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhh
Q 008417 440 VTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGS 501 (566)
Q Consensus 440 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~ 501 (566)
....... ........+.....+...........+..| +++|+++|+.+.+.++|+
T Consensus 312 ~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 312 LVSPLSL------AVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred CCCcchH------HHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 2110000 111111111222222333333356667776 699999999998888763
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=218.35 Aligned_cols=357 Identities=11% Similarity=0.056 Sum_probs=229.7
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
++.+...++..... ....+.++.|+++++|.+..++|++.+++.+...+ +|++|+++|| +|||+.++.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-----~grr~~~~~~~~~~ 78 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-----LGLKKHLLWIISGL 78 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHH
Confidence 44555555555554 56677888899888999999999999999888877 8999999999 99999998876665
Q ss_pred HHHHHHHHhh--cc-----hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHH
Q 008417 213 ALSWSLMATI--VE-----SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS 285 (566)
Q Consensus 213 ~~~~~~~~~~--~~-----~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 285 (566)
+++....... .+ .....++.+++.|++.+...+....+..|..+ +++..++......++|.++||.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~g~~~g~~~~ 153 (396)
T TIGR00882 79 LVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR-----NSNFEYGKARMFGCVGWALCASIA 153 (396)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-----hcccccchhhhhcccHHHHHHHHH
Confidence 5443322110 11 23334566778888777776666666655432 123344555566689999999999
Q ss_pred hHhhcccChHHHHHHHHHHHHHHHHhhee-eccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHH
Q 008417 286 GSMVDAYGVRFVFGVTALLPLITSGVAVL-VKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF 364 (566)
Q Consensus 286 ~~l~~~~gwr~~f~i~~i~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (566)
+.+.+ .+||++|++.+++.++..+..+. .+|+++++.. +++.+ .+ +.++..++..+.+|+|.++..++..+
T Consensus 154 g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~l~~~ 225 (396)
T TIGR00882 154 GILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATV-ANALG--AN----ASAFSLKLALELFRQRKFWMFVLYVV 225 (396)
T ss_pred hhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-hcccc--cc----cCCCCHHHHHHHHcCCcHHHHHHHHH
Confidence 98865 59999999998887774433333 3443221111 10000 00 11112345667789988776665544
Q ss_pred HHhhcccchhhhHHHHhhc----cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh
Q 008417 365 LWQATPHSDSAMFYFTTNE----LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV 440 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 440 (566)
.....+.........|.++ .+.+....|....+..+...++.+..+++.||+++|+.+.++.++.++.........
T Consensus 226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~ 305 (396)
T TIGR00882 226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT 305 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC
Confidence 4333222222222222222 255666788888888888999999999999999999998888777766544433211
Q ss_pred hccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHH-HHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 441 TGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFAT-LMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
. . +......++.++...........+..+..+++.+++..+. .+....+|+.+++.++|++.+..|+..
T Consensus 306 ~---~-------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~ 375 (396)
T TIGR00882 306 T---A-------LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQG 375 (396)
T ss_pred C---h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 1 1 1111112222222222222222566777888888887776 678899999999999999999988654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=207.63 Aligned_cols=354 Identities=17% Similarity=0.152 Sum_probs=262.2
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhh-hhhhcchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSL-PWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~-~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
.+.+...+|..++. -....++.+.+++++|+|+.|.+++.++..+ +..+..+.|.+.|| +|-|++..++.++.
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-----fGgR~~~~~s~~l~ 89 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-----FGGRKWTILSMLLL 89 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-----cCchHHHHHHHHHH
Confidence 45555666666665 5667778888889999999999999999855 45558999999999 88889999999998
Q ss_pred HHHHHHHHhh--cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 213 ALSWSLMATI--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 213 ~~~~~~~~~~--~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
.+-.+.+++. -++++++++++++.|++++.. .+....++.++ |+++.|.++++.. .+++|..+...++..+..
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasF-av~m~~~s~~f---P~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~ 164 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASF-AVGMPNASFFF---PKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV 164 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhccccee-hcccccccccC---ChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence 8888888772 233459999999999988765 46677899999 6666778888777 778999999999988888
Q ss_pred ccC---hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHH-
Q 008417 291 AYG---VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFL- 365 (566)
Q Consensus 291 ~~g---wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 365 (566)
..| |+....+..+..++ .+..++.+.+.++.+...+ +.+. .+++...++++.|.+.++.+.
T Consensus 165 ~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~------------~~~~--~~~~~v~~~~~~W~lsllY~~t 230 (417)
T COG2223 165 AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK------------PQLP--AQLKAVFSNKDTWLLSLLYFAT 230 (417)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc------------ccch--hHHHHHhcCcchHHHHHHHHHH
Confidence 888 99999988888877 5666677766655322211 1111 456667889999988865544
Q ss_pred HhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccc
Q 008417 366 WQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNR 445 (566)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (566)
++........+..++..++|.++..+|.......+.+.+...++|+++||+|.+|.+.+..+.+.++.....+.......
T Consensus 231 FG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~ 310 (417)
T COG2223 231 FGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH 310 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc
Confidence 44433344444556667799999999999999999999999999999999999999998888888776665544322110
Q ss_pred ccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 446 KFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 446 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
. .......+..+...++.+......+-++....| ++.|.+.|+...++.+|+..-|...|...+..|
T Consensus 311 ~---~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg 377 (417)
T COG2223 311 G---GSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG 377 (417)
T ss_pred C---cchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcc
Confidence 0 000122222233333444444443455666665 578999999999999999999999999999887
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=216.69 Aligned_cols=342 Identities=16% Similarity=0.158 Sum_probs=227.7
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhh-hhhhcchhhhccccc-CcCCCCCchHhHHHHHHHHHHHHHHHhhcch-
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSL-PWLIKPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLMATIVES- 225 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~-~~~~~~~~G~lsDr~-~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~- 225 (566)
......+..|+.+.+|+++..+|.+..+.-+ ..+..|+.|.++||+ +|+| +||++++++.+..+++.+++.. .++
T Consensus 26 ~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-r~rp~il~g~i~~~i~~~llf~-~p~~ 103 (460)
T PRK11462 26 DNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-KFRPWVLFGALPFGIVCVLAYS-TPDL 103 (460)
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC-CcchhHhHHHHHHHHHHHHHHh-CCCC
Confidence 4556677888889999999999999888744 444499999999998 7899 9999999999888888877765 442
Q ss_pred -----HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc-------cC
Q 008417 226 -----KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-------YG 293 (566)
Q Consensus 226 -----~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------~g 293 (566)
...+++..++..++..+...+..++.+|+++ +.++|..+.++...+..+|.++++.+...+.+. .|
T Consensus 104 s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~--d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g 181 (460)
T PRK11462 104 SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITN--DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLG 181 (460)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 3456667777899999999999999999995 567788899988888888888887776555433 35
Q ss_pred hHHHHHHHHHHHHHH-HHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 294 VRFVFGVTALLPLIT-SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 294 wr~~f~i~~i~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
|+....+.+++.++. .++....+|.++.+. ++ .+. .+.++..++||.++..+...++.......
T Consensus 182 ~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~--~~----------~~~---~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~ 246 (460)
T PRK11462 182 FQGGIAVLSVVAFMMLAFCFFTTKERVEAPP--TT----------TSM---REDLRDIWQNDQWRIVGLLTIFNILAVCV 246 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeccCCCc--cC----------CCH---HHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 787777777766663 344444555432211 00 012 23455667887776665444444333222
Q ss_pred hhhh-HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 373 DSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 373 ~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
.... .+++...+| ++...+.+.....++.+++.++++++.||+++|+.+..+..+..+..+.+.+... .+.
T Consensus 247 ~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-~~~------ 318 (460)
T PRK11462 247 RGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM-QAS------ 318 (460)
T ss_pred HHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch-hHH------
Confidence 2222 233333344 3444556667778889999999999999999988776554444333333222211 111
Q ss_pred chhhhhHHHHHHHhhhhhhHHHH-HHHHhhCC-------CCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVL-VLAARLCP-------EGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.......++.++.. ....+.. +++.+..+ ++..|..++..+.+.++|.++++.++|.+.+..|+..
T Consensus 319 -~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~ 392 (460)
T PRK11462 319 -ITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA 392 (460)
T ss_pred -HHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 00111111122222 2222322 55555544 6677888899899999999999999999999988854
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-25 Score=220.99 Aligned_cols=348 Identities=19% Similarity=0.233 Sum_probs=253.0
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhh-hhhhcchhhhccccc-CcCCCCCchHhHHHHHHHHHHHHHHHhhc-c-
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSL-PWLIKPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLMATIV-E- 224 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~-~~~~~~~~G~lsDr~-~~~G~grr~~~~~~~~~~~~~~~~~~~~~-~- 224 (566)
......+.+|+.+.+|+++..+|++..+..+ ..+.+|+.|.++||+ +|+| +||++++++.++.+++.+++.. . +
T Consensus 18 ~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~-~~p~ 95 (428)
T PF13347_consen 18 SLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFS-PPPA 95 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhc-cccc
Confidence 3445567788889899999999999888844 445599999999997 7899 9999999999999999888886 4 3
Q ss_pred ------hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc------
Q 008417 225 ------SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY------ 292 (566)
Q Consensus 225 ------~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------ 292 (566)
...++.+..++..++......+..++.+|+.++ +++|.+..+....+..+|.++...+.+.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~--~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~ 173 (428)
T PF13347_consen 96 GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD--PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTS 173 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc--HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccc
Confidence 233457777778999999999999999999953 446777888777777788876666666655322
Q ss_pred -ChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcc
Q 008417 293 -GVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP 370 (566)
Q Consensus 293 -gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (566)
+|++..++.+++.++ ..+..+..+|++...++++ +.....+.++..++||.++..++..++.....
T Consensus 174 ~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~ 241 (428)
T PF13347_consen 174 NGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE------------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAF 241 (428)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhheeeeccccccccc------------cccccccchhhhcccchHHHHHHHHHHHHhhh
Confidence 699999999888888 5666677888222211111 11122334566788888887777777666655
Q ss_pred cchhhhHHHHhh-ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccc
Q 008417 371 HSDSAMFYFTTN-ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGI 449 (566)
Q Consensus 371 ~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (566)
........++.+ .+|.+ ...+.......++.+++.++++++.||+|+|+.+..+.++..++.+.+.+..... .
T Consensus 242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 315 (428)
T PF13347_consen 242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGS-P---- 315 (428)
T ss_pred hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhh-H----
Confidence 554544444444 45644 6677777888999999999999999999999999999999888877766654211 1
Q ss_pred ccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCC-------CCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCcc
Q 008417 450 SDEWFAIGDSLILTVLSQASFMPVLVLAARLCP-------EGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDS 521 (566)
Q Consensus 450 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~ 521 (566)
+......++.++..+..+....++++|..+ ++..|..+|+.+...+++..+++.+.|.+.+..|+....
T Consensus 316 ---~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~ 391 (428)
T PF13347_consen 316 ---WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANA 391 (428)
T ss_pred ---HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCc
Confidence 122222233333333333322366666554 567899999999999999999999999999999987643
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=218.07 Aligned_cols=366 Identities=14% Similarity=0.101 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHH
Q 008417 136 FAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL 214 (566)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~ 214 (566)
..+++....+.+..........-+++++|++.+..|++.+++.+.+.+ +|+.|+++|| |+||.++.+|..++.+
T Consensus 36 ~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-----yNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 36 VILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-----YNRKRVIAVGIFIWTL 110 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-----cCcceEEeeHHHHHHH
Confidence 334444444444433333455677788999999999999999888877 8999999999 9999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC-
Q 008417 215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG- 293 (566)
Q Consensus 215 ~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g- 293 (566)
+.++.++ +..+|++.++|.+.|+|.+...+..+++++|.+ +..+|++.+++++.+..+|..+|.+++..+.+..+
T Consensus 111 Av~~~~f-s~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f---~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 111 AVFASGF-SNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF---PDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhccchhhhcccchhHhhhcC---cchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 9999999 899999999999999999999999999999999 77889999999999999999999999999987766
Q ss_pred hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 294 VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 294 wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
|||.|+..++++++ .++..++.+|+++....+.+..... ..+....+++++...+++.+....+......+....
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~----~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs 262 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM----VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGS 262 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC----CCCccchHHHHHHHHccCceeeehHHHHHHHHhccc
Confidence 99999999999998 6677777888765322211111100 113345677787777766644444333332222212
Q ss_pred ----hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHHHHHhH---HHHhhh
Q 008417 373 ----DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN----VPLRKIFLANTIFGTALGMT---QVFLVT 441 (566)
Q Consensus 373 ----~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r----~g~~~~~~~~~~~~~~~~~~---~~~~~~ 441 (566)
...+.++..+..|++....-+...+...++.+|.+++|.++|| +.+.....+..+..+.+... +.+...
T Consensus 263 ~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~ 342 (493)
T KOG1330|consen 263 LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP 342 (493)
T ss_pred cchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH
Confidence 1222333333346566555555577777788888888888777 33322232222222222111 111111
Q ss_pred ccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhh-hHhHHHHHHHHhc-CCC
Q 008417 442 GLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSV-LGGLLGAGLTQLF-GVT 518 (566)
Q Consensus 442 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~-i~~~~~g~l~~~~-g~~ 518 (566)
.... ...++.+...++........+.+..-+..+.+|++.|.+++++...+..+.+- -+|.+.|.+.+.+ |+.
T Consensus 343 ~~~~----~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 343 AFTS----SSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred hhhh----HHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 0000 00011111111111111222222225667888999999999999888776655 5566999999986 444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-24 Score=241.61 Aligned_cols=330 Identities=12% Similarity=0.072 Sum_probs=228.8
Q ss_pred HHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHH---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhH
Q 008417 168 AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVL---SGLLGALSWSLMATIVESKYSAALSILLGSLSVAFS 243 (566)
Q Consensus 168 ~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~ 243 (566)
...++..+++.+++++ +|+.|.++|| +|||+++.. +.++..+..+.... .++++.++++|+++|++.++.
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-----~~rk~~~~~~~~~~~~~~~~~~~~~~-~~s~~~l~~~~~l~gi~~a~~ 125 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-----YDKAKLAKILKFAEIGIAALAIYGFH-LNSVPLLFAALFLMGIHSALF 125 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-----ccHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhh
Confidence 4577788888888877 8999999999 999997643 22222222222222 588999999999999999999
Q ss_pred hhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhheeeccccccCC
Q 008417 244 DVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGP 323 (566)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~ 323 (566)
.++..+++.+++ ++++++.++++..++.++|.++||+++|++....||++.|++.+++.++.+++.+++++++....
T Consensus 126 ~p~~~a~l~~~~---~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1140)
T PRK06814 126 GPIKYSILPDHL---NKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAP 202 (1140)
T ss_pred chHHHHhhHhhc---CccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 999999999999 56678888888989999999999999999999999999995555555556666667776543211
Q ss_pred CcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHh-hccCCChhhhhHHHHHHHHHH
Q 008417 324 SRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTT-NELGFTPEFLGRVKFVTSVAS 402 (566)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~g~~~~~~~~~~ 402 (566)
..+.. . ...++....+....+++.++..++..++..+.......+.+.+. +.+|.++...|++.+...++.
T Consensus 203 ~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~ 274 (1140)
T PRK06814 203 DLKID-----R---NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGV 274 (1140)
T ss_pred CCeec-----c---chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 11100 0 01122233455567777777766554444443333333444444 457999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc----cccccc------cccchhhhhHHHHHHHhhhhhhHH
Q 008417 403 LLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG----LNRKFG------ISDEWFAIGDSLILTVLSQASFMP 472 (566)
Q Consensus 403 ~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~ 472 (566)
+++.++.+++.++..+++.+..+.++.++..+.+.+.... ...... ....+......++.++..+....+
T Consensus 275 ~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 354 (1140)
T PRK06814 275 AVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVP 354 (1140)
T ss_pred HHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999988877776666655555444333221000 000000 011122223334444455555556
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 473 VLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 473 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
..+++++.+|++.+|+++|+.+++..++..+++.++|.+.+.
T Consensus 355 ~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 355 LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 669999999999999999999999999999999999998753
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=211.86 Aligned_cols=325 Identities=14% Similarity=0.097 Sum_probs=227.6
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 008417 154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALS 232 (566)
Q Consensus 154 ~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 232 (566)
++.+.+++++|++..+.|++.+++.+++.+ +++.|+++|| +|||+.+.++.++..++.+.+ . .++.+.+++.
T Consensus 21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~ 93 (355)
T TIGR00896 21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-----FGEERSVAAGLLLIAAGILIR-S-APGTALLFAG 93 (355)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCchHHHHHHHHHHHHHHHHH-H-hccHHHHHHH
Confidence 344456677999999999999999999888 7788999999 999999999998888887776 5 7888999999
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc--ChHHHHHHHHHHHHHHHH
Q 008417 233 ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY--GVRFVFGVTALLPLITSG 310 (566)
Q Consensus 233 r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gwr~~f~i~~i~~~~~~~ 310 (566)
|++.|++.+...+....++.|++ + ++|+.+.+.......+|..+++.+++.+.+.. +||+.|.+.+++.++..+
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDF---P-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhC---c-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999988777777887777 3 36788888888888899999999998887664 399999887765444322
Q ss_pred hheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhh
Q 008417 311 VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEF 390 (566)
Q Consensus 311 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 390 (566)
.++++.+++++.+++ ..+ ...++.+|+|.++...+..++....+.....+.+.+.++.|++..+
T Consensus 170 --~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~ 233 (355)
T TIGR00896 170 --AWIPQVRRRVAANQT-----------TTR---LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAAT 233 (355)
T ss_pred --HHhhhhccccCCCCC-----------CCC---CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 223443221111000 000 1123446677766555444444333334444555556678999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhh
Q 008417 391 LGRVKFVTSVASLLGVGLYNGFLKNVP-LRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQAS 469 (566)
Q Consensus 391 ~g~~~~~~~~~~~~~~~~~~~l~~r~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 469 (566)
.+.+.+...++.+++.++.+++.||++ +|+.+..+.++..++.+.+.+....+ . .. ..++.+ ++...
T Consensus 234 ~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~---~~~l~g-~~~g~ 301 (355)
T TIGR00896 234 AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHG-L-------WA---WALVLG-LGQGG 301 (355)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhH-H-------HH---HHHHHH-Hhhhh
Confidence 999999999999999999999999995 55555566555555544333222111 0 00 111222 23333
Q ss_pred hHHHH-HHHHhhC-CCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 470 FMPVL-VLAARLC-PEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 470 ~~~~~-~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
..|.. +.+.+.. ++++++...++.+.+.+++..++|.+.|.+.|..|.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 302 AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33433 4444444 456778999999999999999999999999998763
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=240.21 Aligned_cols=355 Identities=11% Similarity=0.011 Sum_probs=239.7
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCC--HHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLD--PAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s--~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
+..+++..+...+. ......+..++..+++.+ ....+++.+++.+++++ ++++|+++|| +|||++++++.+
T Consensus 11 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-----~grk~~l~~~~~ 85 (1146)
T PRK08633 11 FLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-----FSKNRVIRIVKL 85 (1146)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-----ccHHHHHHHHHH
Confidence 33344444444443 333444445555556664 34578888888888877 7888999999 999999998887
Q ss_pred HHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHh
Q 008417 211 LGALSWSLMATI--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM 288 (566)
Q Consensus 211 ~~~~~~~~~~~~--~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 288 (566)
+..++.+++.+. .++++.++++|++.|++.+...+...+++.|++ +.++|+.++++...+..+|.++|+++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~---~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l 162 (1146)
T PRK08633 86 FEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELV---GKENLSRANGLLEAFTIVAILAGTALFSFL 162 (1146)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhc---CcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 665554443321 577999999999999999999999999999999 556788888888888899999999999999
Q ss_pred hcc---------cChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhH
Q 008417 289 VDA---------YGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFL 358 (566)
Q Consensus 289 ~~~---------~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (566)
.+. .+|++.+.+..+...+ .++..+.+||.+.......++. . ....+...+.+..+++++.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~~ 236 (1146)
T PRK08633 163 FESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKK--K----YLFPKLLWRNLKLLRSDRVLWL 236 (1146)
T ss_pred HHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccccc--c----cccHHHHHHHHHHHhcCcHHHH
Confidence 865 2355555444433333 4455566677654322111000 0 0112223344555677777666
Q ss_pred HHHHHHHHhhcccchh-hhHHHHhhccCCChh-hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHH
Q 008417 359 PTLFVFLWQATPHSDS-AMFYFTTNELGFTPE-FLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ 436 (566)
Q Consensus 359 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 436 (566)
.++..+++........ .+..++.+.+|++.. ..|++.+...++.+++.++.+++.||+++++.+.++.++.+++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 316 (1146)
T PRK08633 237 AIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLL 316 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHH
Confidence 5544444333222222 334444566899988 99999999999999999999999999998888877777666554444
Q ss_pred HHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 437 VFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
.+.... +..+...++.++..+....+..+++.+..|++.+|+++|+.+++.+++..+++.+++.+..
T Consensus 317 ~~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 317 PTAPSL----------ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHhhhH----------HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332210 1122223333334444444555888899999999999999999999999888887776654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-26 Score=210.02 Aligned_cols=327 Identities=16% Similarity=0.165 Sum_probs=243.0
Q ss_pred hcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 008417 162 DLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSV 240 (566)
Q Consensus 162 ~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~ 240 (566)
.++-+..++|++.+...+..++ +|+.|.+.|| +|+|-.+++|..++..+.+++++ .++++.+++.|.++|+|.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-----iGy~ipm~~Gl~vmf~sTilFaf-g~sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-----IGYKIPMVAGLFVMFLSTILFAF-GNSYPMLFVARSLQGVGS 173 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-----hccccHHHHHHHHHHHHHHHHHH-cchhHHHHHHHHHhhhhH
Confidence 3566789999999998766655 9999999999 99999999999999999999999 999999999999999999
Q ss_pred HhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHH-HHhheeecccc
Q 008417 241 AFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT-SGVAVLVKEQQ 319 (566)
Q Consensus 241 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~-~~~~~~~~e~~ 319 (566)
++..+...++++|.+++ ..+|+.++|+..++.++|.++||.+||++++..|.+.+|.+.++++++. .+..+.++.++
T Consensus 174 A~~~tsglamlAd~f~~--d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPE--DNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHHhhhHHHHHHHccc--chhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 99999999999999974 4468999999999999999999999999999999999999999999994 44444444433
Q ss_pred ccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh-HHHHhhccCCChhhhhHHHHHH
Q 008417 320 VLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM-FYFTTNELGFTPEFLGRVKFVT 398 (566)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~ 398 (566)
.+.... ++-.++++++++|.++.........+....+..+. ..+..+.+.-+..+.|+.+...
T Consensus 252 ~~~~~~----------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~ 315 (464)
T KOG3764|consen 252 MDPDST----------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPA 315 (464)
T ss_pred cCcccc----------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeeccc
Confidence 322111 12235678889988877765544444443344443 3445566674445899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhH--HHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHH
Q 008417 399 SVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT--QVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVL 476 (566)
Q Consensus 399 ~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 476 (566)
.+...++..+.+.+.||++..+.+.....+..++... ..+... +.. + +.......+.........+|...+
T Consensus 316 ~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~-~~~-L-----~vp~~~l~~~i~~~dasl~P~l~~ 388 (464)
T KOG3764|consen 316 SLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS-IAQ-L-----WVPNFGLGFGIGLADASLIPTLGY 388 (464)
T ss_pred ccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh-HHH-H-----hhhhHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999555444333333222221 111111 110 0 111111122222445666676655
Q ss_pred HHhhCCCC---chHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 477 AARLCPEG---MEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 477 ~~~~~~~~---~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+.+....+ .-|.++++.....++|.++||.++|.+.+..|+.|
T Consensus 389 lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~w 434 (464)
T KOG3764|consen 389 LVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEW 434 (464)
T ss_pred hcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHH
Confidence 55544444 67899999999999999999999999999999877
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=200.53 Aligned_cols=354 Identities=19% Similarity=0.235 Sum_probs=251.0
Q ss_pred HHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHH
Q 008417 139 AMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSW 216 (566)
Q Consensus 139 ~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~ 216 (566)
...+|.+.+. +...+.++.|+++ .|+|..|+|.+.++..+...+ ++++|.++|| ++ .+|+++.+..++.++..
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr---~~-~~~~~l~~~~l~~~~~~ 82 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADR---FG-SAKRILALLSLLSALAL 82 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hh-hHHHHHHHHHHHHHHHH
Confidence 3344433332 4456778889977 599999999999998777777 5688999999 22 57788878777777776
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHH-HhHhhccc---
Q 008417 217 SLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF-SGSMVDAY--- 292 (566)
Q Consensus 217 ~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~l~~~~--- 292 (566)
..... .++++.+++..++..+......+..+++..+..++ ++.+ ++-...++++|.+++... ++.+....
T Consensus 83 ~~~~~-~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~-~~~~----YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~ 156 (400)
T PF03825_consen 83 LLLAF-SSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD-RGKD----YGRIRLWGSIGFIVAALAFGGLLGGYLGIS 156 (400)
T ss_pred HHHHH-hccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc-ccCC----CCcchhhhhHHHHHHHHHHHHHHHhhhccc
Confidence 66666 78888888888888888887788888887777742 2233 333344446777777544 23333322
Q ss_pred ChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccc
Q 008417 293 GVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHS 372 (566)
Q Consensus 293 gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (566)
+..+.+++.++..++.....+.+|+.+.++..+++ ..+...++.++++|+|+++..++..++.+.....
T Consensus 157 ~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~-----------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~ 225 (400)
T PF03825_consen 157 GTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKES-----------VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAA 225 (400)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCccccccCCC-----------cccccchHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 23356666666555555555667776532221111 1122334556889999998888888887777777
Q ss_pred hhhhHHHHhhccC-CChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 373 DSAMFYFTTNELG-FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 373 ~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
...+...|.++.| .+....+.+.++..++.++..+..+++.+|+|.++++.++.+...+-..++.....++.. .+
T Consensus 226 ~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~--~~-- 301 (400)
T PF03825_consen 226 YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPF--IV-- 301 (400)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHH--HH--
Confidence 7777788888887 778888888889999999999999999999999999999999888887666544222110 00
Q ss_pred chhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHH-HhhhhhhHhHHHHHHHHhcCCCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSI-SNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
........+.++.++..+.....++.+.+|++.|+++.++++.+ ..+|..+|..++|+++|.+|.+.
T Consensus 302 -~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 302 -ALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred -HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence 01111123455566666666668999999999999999998876 57999999999999999988654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=209.49 Aligned_cols=375 Identities=13% Similarity=0.048 Sum_probs=237.1
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhh--cCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDD--LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~--~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
.+.++...+...+. ....+.++.|++++ +|++..+.+++.+.+.+...+ .+++|+++||+ +|||+.++++.+
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~----~G~~~~l~~~~~ 87 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRV----WGTKKTMVLGGI 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhh----cchHHHHHHHHH
Confidence 44555555665555 45677788899877 899999999999999777666 66789999992 399999999999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
+.+++.+++++ +++.+.+++.+++.|+|.+...+...++++|+++++++++|+..+++.+.+.++|.++||.+++++.+
T Consensus 88 ~~~~g~~~~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 88 VLMLGHFMLAM-SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred HHHHHHHHHHh-cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 88888888999999999999888999999999977665678888999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchH---------------------H-H-----
Q 008417 291 AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSK---------------------Q-N----- 343 (566)
Q Consensus 291 ~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~----- 343 (566)
.+||++.|++.++..++.++..++.++..++.+.+++..+.++.+...... . .
T Consensus 167 ~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (475)
T TIGR00924 167 NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTV 246 (475)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 899999999988666554444444333221111100000000000000000 0 0
Q ss_pred --------HHH-----HHHHhccc--chhHHHHHHHHHhhcccchhhhHHHHhh-ccCCChh----hhhHHHHHHHHHHH
Q 008417 344 --------MFQ-----LWEAVKQP--NVFLPTLFVFLWQATPHSDSAMFYFTTN-ELGFTPE----FLGRVKFVTSVASL 403 (566)
Q Consensus 344 --------~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----~~g~~~~~~~~~~~ 403 (566)
.+. ....-+++ .+..+.+...++...+.........+.+ ..+.+.. ..+++.++..+..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~ii 326 (475)
T TIGR00924 247 TLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVV 326 (475)
T ss_pred HHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHH
Confidence 000 00000111 1112222223333333333332333332 2332221 25677777777777
Q ss_pred HHHHHHH----HHhhc-CCcchhh--HHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-H
Q 008417 404 LGVGLYN----GFLKN-VPLRKIF--LANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-V 475 (566)
Q Consensus 404 ~~~~~~~----~l~~r-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 475 (566)
+..++.. ++.|| .+.+... .+|.++.+++.+.+.+.....+...... ..+.....+...++.....|.. +
T Consensus 327 l~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s--~~~~i~~~~~~~~ge~~~~p~~~~ 404 (475)
T TIGR00924 327 VGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTS--PWFMVLIYLFQTLGELMISPLGLS 404 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccC--HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 7766644 44444 2223333 5667777666555443211100000011 2222333333446666666666 9
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 476 LAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 476 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
++.+..|++.||+++|+......+|..+++.+.....+..+
T Consensus 405 ~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~ 445 (475)
T TIGR00924 405 WWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG 445 (475)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999998888888877665444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=213.33 Aligned_cols=266 Identities=18% Similarity=0.149 Sum_probs=211.7
Q ss_pred HHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 008417 159 LKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGS 237 (566)
Q Consensus 159 l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g 237 (566)
+.+++++...+.+.+.+++.++|++ +++.|.+.|| ++-.+.+....+...+..++... ..|++.+++.|++.|
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-----~~ls~~l~~~~~~w~~~~~~~~~-~~s~~~~ialr~llG 145 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-----FPLSKGLSVSGILWGLFGFLTAA-VHSFPGLIALRFLLG 145 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 4577899999999999999999999 6888999999 88778888888888777777776 899999999999999
Q ss_pred HHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh------cccChHHHHHHHHHHHHH-HHH
Q 008417 238 LSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV------DAYGVRFVFGVTALLPLI-TSG 310 (566)
Q Consensus 238 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~------~~~gwr~~f~i~~i~~~~-~~~ 310 (566)
+..+...|....+++.++ .+++|+..++++++...+|.++|.+++..+. ...||||.|++.+++.++ .++
T Consensus 146 l~es~~wP~~~~~lg~wy---~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 146 LFESGGWPGVVAILGNWY---GKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HHhcccchHHHHHHHhhc---ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence 999999999999999999 7777888888899888999999999998863 357999999999999988 778
Q ss_pred hheeeccccccCCCcCCCC-------CCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhc
Q 008417 311 VAVLVKEQQVLGPSRRQNL-------PLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNE 383 (566)
Q Consensus 311 ~~~~~~e~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (566)
+.+++|+.|.+..-.++++ .++..+.....+...+.+++.+++|.+|...+..++.....+....+.+++...
T Consensus 223 ~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~ 302 (495)
T KOG2533|consen 223 VFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKS 302 (495)
T ss_pred EEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHc
Confidence 8888998877321111110 000000111111456778889999999999988888777777677777777776
Q ss_pred -cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC----CcchhhHHHHHHHHHHH
Q 008417 384 -LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV----PLRKIFLANTIFGTALG 433 (566)
Q Consensus 384 -~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~----g~~~~~~~~~~~~~~~~ 433 (566)
.|++..+++.+.+...++++++.++++.++||. .+|........+..+..
T Consensus 303 ~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 303 NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG 357 (495)
T ss_pred CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999994 44444444444444443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=209.17 Aligned_cols=370 Identities=11% Similarity=0.096 Sum_probs=228.9
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhh-hhhhhcchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSS-LPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~-~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
.+.++...+...+. ......+..|+++++|++..+.+++.+.+. +.+...++.|+++||+ +|||+.++++.+++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~----~G~r~~~~~g~~~~ 91 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL----LGTKRTIVLGAIVL 91 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhc----cchHHHHHHHHHHH
Confidence 44555555555555 456677888999999999999999888885 5666678889999973 69999999999999
Q ss_pred HHHHHHHHhhcchHH-HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc
Q 008417 213 ALSWSLMATIVESKY-SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA 291 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~-~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 291 (566)
.++.+.+++ +.+.. .+++.|+++|+|.+...+...++++|.+|++++ +|...+++.+.+.++|.++||.+++++.++
T Consensus 92 ~~g~~~~~~-~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-~~~~~~~~~~~~~nig~~~g~~l~g~l~~~ 169 (489)
T PRK10207 92 AIGYFMTGM-SLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-RLDGAFTLFYMSINIGSLISLSLAPVIADK 169 (489)
T ss_pred HHHHHHHHH-hccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988 65544 355889999999999998999999999976543 567778888888999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCC--CCCCCCcc---------------ccchHH-H----------
Q 008417 292 YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQN--LPLGDPSF---------------FESSKQ-N---------- 343 (566)
Q Consensus 292 ~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~---------------~~~~~~-~---------- 343 (566)
+|||+.|++.++..++.++.+++.++..+....+.++ .+...... .+.... .
T Consensus 170 ~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (489)
T PRK10207 170 FGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVV 249 (489)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999997664444444444444322211100000 00000000 000000 0
Q ss_pred -------HHHHHHHhcccchhHHHHH--HHHHhhcccchhhhHHHHhh-ccCCCh----hhhhHHHHHHHHHHHHHHHHH
Q 008417 344 -------MFQLWEAVKQPNVFLPTLF--VFLWQATPHSDSAMFYFTTN-ELGFTP----EFLGRVKFVTSVASLLGVGLY 409 (566)
Q Consensus 344 -------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~g~~~----~~~g~~~~~~~~~~~~~~~~~ 409 (566)
.++..+.+|+|.+....++ ..++...+.........+.+ ..+.+. .....+.....+..++..++.
T Consensus 250 ~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~ 329 (489)
T PRK10207 250 TIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPIL 329 (489)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHH
Confidence 0000122333332222211 22222222222222222333 222111 122334445556676777888
Q ss_pred HHHhhcCCcchh-------hHHHHHHHHHHHhHHHHhhh-ccccccccccchhhhhHHHHHHHhhhhhhHHH-HHHHHhh
Q 008417 410 NGFLKNVPLRKI-------FLANTIFGTALGMTQVFLVT-GLNRKFGISDEWFAIGDSLILTVLSQASFMPV-LVLAARL 480 (566)
Q Consensus 410 ~~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 480 (566)
+++.||.++|+. +.+|.++.+++.+.+..... ......... .+......++.+ ++.....|. ++++.+.
T Consensus 330 ~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s-~~~~i~~~~l~g-~Ge~~~~~~g~~~~~~~ 407 (489)
T PRK10207 330 AGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTS-PWFIVLVYLFQS-LGELFISALGLAMIAAL 407 (489)
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccC-HHHHHHHHHHHH-HHHHHHhHHHHHHHHHh
Confidence 899999988863 66676776666543321110 000000011 122222233333 444445554 4899999
Q ss_pred CCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 481 CPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 481 ~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
.|++.+|.++|+.+....+|+.+|..++....
T Consensus 408 aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 408 VPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998888876553
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-23 Score=212.01 Aligned_cols=375 Identities=15% Similarity=0.108 Sum_probs=253.5
Q ss_pred HHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhh
Q 008417 168 AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVV 246 (566)
Q Consensus 168 ~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~ 246 (566)
.+.+++.+...++.++ +++.|+++|+ +|||+.++++.+++.++.+++++ ++|+++++++|++.|+|.|.....
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~-----~GRk~~l~~~~~~~~iG~ii~~~-a~~~~~l~~GR~l~G~g~G~~~~~ 162 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDR-----IGRKKTLLLAVVLFLIGAIIIAL-APSWYQLIVGRILTGLGVGGASVL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHhccchhhhhhc
Confidence 4568999999888887 6788999999 99999999999999999999999 999999999999999999999999
Q ss_pred hhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc-cChHHHHHHHHHHHHHHHHhheeeccccccCCCc
Q 008417 247 VDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSR 325 (566)
Q Consensus 247 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~ 325 (566)
...+++|+. +.+.|+...+.......+|..++..++....+. ++||..+.+..+.+++..+..+++||+|++..++
T Consensus 163 ~piy~sEia---p~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~ 239 (513)
T KOG0254|consen 163 APVYISEIA---PAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEK 239 (513)
T ss_pred chhhHhhcC---ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc
Confidence 999999999 777888888888888888888885555544432 5899999999999888666688999998874432
Q ss_pred CCCCCC-------CC--CccccchHHHHH-----HH--------HHHhcccchhH----HHHHHHHHh-hcccchhhhHH
Q 008417 326 RQNLPL-------GD--PSFFESSKQNMF-----QL--------WEAVKQPNVFL----PTLFVFLWQ-ATPHSDSAMFY 378 (566)
Q Consensus 326 ~~~~~~-------~~--~~~~~~~~~~~~-----~~--------~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~ 378 (566)
.+..+. +. +...+......+ +. +..+..|.... .+....+++ ........+..
T Consensus 240 g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~ 319 (513)
T KOG0254|consen 240 GRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYST 319 (513)
T ss_pred CChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehH
Confidence 221110 00 000000000000 00 11111122222 122222222 23333333444
Q ss_pred HHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccc--ccccchhhh
Q 008417 379 FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKF--GISDEWFAI 456 (566)
Q Consensus 379 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 456 (566)
...+..|.+... .....+.++..+++..+...+.||+|||++++.+...+.++.+++........... .....++.+
T Consensus 320 ~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (513)
T KOG0254|consen 320 TIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAI 398 (513)
T ss_pred HHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHH
Confidence 445556665443 44456677777888888899999999999999999999888877654433211110 011123444
Q ss_pred hHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHHHH
Q 008417 457 GDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLS 535 (566)
Q Consensus 457 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 535 (566)
+..+++...+...+.|+. .+.+|.+|.+.|+.+.++...+..+.+.+-......+.+..+... . +....+++
T Consensus 399 ~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~-----~--f~~f~~~~ 471 (513)
T KOG0254|consen 399 VFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGG-----T--FGYFGGIC 471 (513)
T ss_pred HHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----h--HHHHHHHH
Confidence 555555556666777766 688999999999999999999999888877666666666554111 1 22222222
Q ss_pred Hhhhh-hhhccCCCCCCCCCccchh
Q 008417 536 SLLPL-PLIGLLPQDSPDSTSKESE 559 (566)
Q Consensus 536 ~~i~~-~~~~~~~~~~~~~~~~~~~ 559 (566)
.+... ..+.++||+|.+..++.++
T Consensus 472 ~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 472 LLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHHHHHHheEEcccCCCCcHHHHHH
Confidence 22223 4556789999988776554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=206.81 Aligned_cols=344 Identities=14% Similarity=0.084 Sum_probs=211.3
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhccccc-CcCCCCCchHhHHHHHHHHHHHHHHHhhc----
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLMATIV---- 223 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~-~~~G~grr~~~~~~~~~~~~~~~~~~~~~---- 223 (566)
.....++.|+++.+|++..++|.+.++..+..++ +|++|.++||+ +|+| +||++++.+.+...+..+++....
T Consensus 26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~G-r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (448)
T PRK09848 26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWG-KFRPFLLFGTAPLMIFSVLVFWVPTDWS 104 (448)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCc-CchHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 4455667799998999999999999888776666 88999999997 6788 888898888776665554443211
Q ss_pred c--hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHH-----hHHHHHHHHHHHhHhhccc--Ch
Q 008417 224 E--SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGS-----SAFGGIVSSYFSGSMVDAY--GV 294 (566)
Q Consensus 224 ~--~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~g~~~~~~l~~~~--gw 294 (566)
. .....++..++.+++.+...++..++..++.++ .++|....+....+ ..++..++|.+++...... +|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~ 182 (448)
T PRK09848 105 HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ--PQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVY 182 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence 1 123345556777888888888888888887754 23455554444322 2355556666655432111 12
Q ss_pred HHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccch
Q 008417 295 RFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSD 373 (566)
Q Consensus 295 r~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (566)
.....+.+++.++ .++.....||+...+. + + ....+.++.+++||.++...+..++........
T Consensus 183 ~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~--~------------~-~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~ 247 (448)
T PRK09848 183 HFWTIVLAIAGMVLYFICFKSTRENVVRIV--A------------Q-PSLKISLQTLKRNRPLFMLCIGALCVLISTFAV 247 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcEeccCCCc--c------------C-CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 1111222333333 2333444565532111 0 0 012233556789988877766555544433333
Q ss_pred hhhHHHH-hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 374 SAMFYFT-TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 374 ~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
.....++ .+.+|.++...++......++.+++.++.+++.||+++|+.+.++.++..++.+.+.+... .+.
T Consensus 248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~-~~~------- 319 (448)
T PRK09848 248 SASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV-WSL------- 319 (448)
T ss_pred hhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc-hhH-------
Confidence 3333333 3346766655555455556778889999999999999999999888877766555443211 111
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCC-------CchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPE-------GMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+......++.++.......+..++.++..|. +.+|..+|+.+...++|.++|+.+.|.+.+..|+..
T Consensus 320 ~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~ 393 (448)
T PRK09848 320 PVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIA 393 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1111112222222222332333666666653 457999999999999999999999999999988853
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=214.14 Aligned_cols=335 Identities=13% Similarity=0.089 Sum_probs=236.3
Q ss_pred hhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHH
Q 008417 161 DDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI-VESKYSAALSILLGSL 238 (566)
Q Consensus 161 ~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~g~ 238 (566)
.+++.+..+.+++.+.+..|+++ +.+.|+++|| +|-|+++..+.++.+++.++.... ..+++.+++.|+++|+
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-----~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-----FGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-----cCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 46788999999999999999999 5677999999 999999999999999999998873 2344678999999999
Q ss_pred HHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc-cChHHHHHHHHHHHHHHHHh-heeec
Q 008417 239 SVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-YGVRFVFGVTALLPLITSGV-AVLVK 316 (566)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gwr~~f~i~~i~~~~~~~~-~~~~~ 316 (566)
+.+...++...+.+.|. ++.+|+...++..++..+|.+++.+++|++.+. +||+++|++.++++++..++ .++..
T Consensus 141 ~~g~~~pa~~~i~~~W~---P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWA---PPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHhHHHhhhhceeeeEC---CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 777788888889888899999999999999988 99999999999999995444 45555
Q ss_pred cccccCCCcCC-CCC--CCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHH-hhccCCChhhhh
Q 008417 317 EQQVLGPSRRQ-NLP--LGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFT-TNELGFTPEFLG 392 (566)
Q Consensus 317 e~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~g 392 (566)
|+|.+++...+ |.+ .+.+...+..+...-.++++++++.+|...+..+...........+.+.| .+.+|++..+.|
T Consensus 218 d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G 297 (466)
T KOG2532|consen 218 DSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG 297 (466)
T ss_pred CCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh
Confidence 55554322111 100 00000000000012245677999999999888777666655555554444 456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcc-------hhhH--HHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHH
Q 008417 393 RVKFVTSVASLLGVGLYNGFLKNVPLR-------KIFL--ANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILT 463 (566)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~r~g~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 463 (566)
+..++..+...+..+++|.++||..+| +.+. ++....++..+.+.+...... ...+ .++. +..
T Consensus 298 ~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~-~~a~----~~l~---~~~ 369 (466)
T KOG2532|consen 298 FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHR-LLAV----ILLT---IAI 369 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcc-hHHH----HHHH---HHH
Confidence 999999999999999999999988653 1111 222222222222221111111 0011 1111 111
Q ss_pred HhhhhhhHHHHHHHHhhC-CCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 464 VLSQASFMPVLVLAARLC-PEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
.+.+..... .+..... .+++.+..+|+.+.+..+.+.++|.+.|.+..
T Consensus 370 ~~~g~~~~G--f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 370 GLSGFNISG--FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHcccchhh--hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 111222111 1222222 56899999999999999999999999999885
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=188.75 Aligned_cols=352 Identities=15% Similarity=0.149 Sum_probs=259.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
+..+..++|..|+..-.+..+.|.+++.|+++..+.+++...+..+|.+ +.+.|.+.+| +|+|+-++++..+++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-----~gyk~gi~lgL~l~a 89 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-----LGYKAGIVLGLLLYA 89 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-----hhhHHHHHHHHHHHH
Confidence 6667777888888866677777888899999999999999999999998 6678999999 999999999999999
Q ss_pred HHHHHHHhh--cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc
Q 008417 214 LSWSLMATI--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA 291 (566)
Q Consensus 214 ~~~~~~~~~--~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 291 (566)
++..+..-. ..++..+++..++.|.|.+...+..+.++..+.+++...+| +++..+...+|.++||++++.+..+
T Consensus 90 vg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~r---lnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 90 VGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFR---LNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHH---HHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 998888521 56788889999999999999999999999999966544444 4445555589999999999988752
Q ss_pred -------------------cChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhc
Q 008417 292 -------------------YGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVK 352 (566)
Q Consensus 292 -------------------~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (566)
-.|+++|.+.+...++..+.....|.+..+....++. +.++ ....+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~----------~~~~--~~~~~l~~ 234 (422)
T COG0738 167 GVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLG----------ASGS--AGLSSLFQ 234 (422)
T ss_pred hhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccc----------cccc--chHHHHHh
Confidence 2388888888877666444444433222211111100 0001 04557789
Q ss_pred ccchhHHHHHHHHHhhcccchhhhHHHHhhc-cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 008417 353 QPNVFLPTLFVFLWQATPHSDSAMFYFTTNE-LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA 431 (566)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~ 431 (566)
+|.++...+..|+|.........++..+..+ .|.+..+.+...+...++.++|.+++.++.+|+...|.+.+..++..+
T Consensus 235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~il 314 (422)
T COG0738 235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAIL 314 (422)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999999999988877777776666666 799999999999999999999999999999999999988877666555
Q ss_pred HHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHH
Q 008417 432 LGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGL 511 (566)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l 511 (566)
.++...+....+ .+......+.+.+..+..+.+...+..|++ ....|..-.+.-+|+++.|.+.|++
T Consensus 315 l~~~~~l~~g~v-----------~~~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 315 LLLAVALIGGVV-----------ALYALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHHHHHhcChH-----------HHHHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHH
Confidence 544444332211 111112222233333433337777777732 3334445567788999999999999
Q ss_pred HHhcCCCC
Q 008417 512 TQLFGVTK 519 (566)
Q Consensus 512 ~~~~g~~~ 519 (566)
.|..|...
T Consensus 382 ~d~~g~~~ 389 (422)
T COG0738 382 ADMFGIQL 389 (422)
T ss_pred HHhhhhHH
Confidence 99988654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=195.97 Aligned_cols=358 Identities=15% Similarity=0.131 Sum_probs=230.1
Q ss_pred chHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHH--
Q 008417 134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG-- 209 (566)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~-- 209 (566)
.++.....+|...+. +...+..+.+++++.|++.+++|.+.++..+...+ +|+.|.++|| .|.|+-++...
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-----lg~kK~Ll~~i~~ 82 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-----LGLKKHLLWFIAI 82 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-----CTTCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-----hhhhHHHHHHHHH
Confidence 355566666655554 66788889999887899999999999998666655 8999999999 66555443332
Q ss_pred HHHHHHHHHH-Hh---hcchHH-HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHH
Q 008417 210 LLGALSWSLM-AT---IVESKY-SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF 284 (566)
Q Consensus 210 ~~~~~~~~~~-~~---~~~~~~-~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 284 (566)
++...+-+.. .+ ...|.+ ..+++-+..|++.....++..+++.++.+ +.+.=+|-...++++|.+++..+
T Consensus 83 l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr-----~~~feYG~~R~wGSig~ai~s~~ 157 (412)
T PF01306_consen 83 LLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR-----RNGFEYGRARMWGSIGFAIASLL 157 (412)
T ss_dssp HHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH-----HHSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH-----HhcCCcchHHHHhhHHHHHHHHH
Confidence 2222222222 11 012222 22333333344444445566666655552 23344666777779999999999
Q ss_pred HhHhhcccChHHHHHHHHHHHHHHHHhheee-ccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHH
Q 008417 285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLV-KEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFV 363 (566)
Q Consensus 285 ~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
+|.+.+ .+-+..||+..+..++..++.++. |+.++..+..+.+ .. ++.+...++..+++|+|++|...++.
T Consensus 158 ~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~l~k~~~fw~~~l~v 229 (412)
T PF01306_consen 158 AGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL-GA------KKDKVSLKDVLSLFKMRNFWFFVLFV 229 (412)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-SS------------HHHHHHHTTSHHHHHHHHHH
T ss_pred hheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-cc------CCCCCcHHHHHHHhcchhHHHHHHHH
Confidence 999986 567788888776666543333333 3322221111111 00 12333567888999999999988765
Q ss_pred HHHhhcccchhhhHHHHhh----ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHh
Q 008417 364 FLWQATPHSDSAMFYFTTN----ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFL 439 (566)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~----~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 439 (566)
......+......++.|.. ..+.+....|++.++..+..++...+.+++.+|+|.|+.++++.+++.+-.++..+.
T Consensus 230 ~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~ 309 (412)
T PF01306_consen 230 IGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA 309 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh
Confidence 5544444443333332222 334556789999999999999999999999999999999999999988886666554
Q ss_pred hhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHH-HHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 440 VTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATL-MSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 440 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
... +.+...-.+.++-.........-|+.+..|++..++.+.+. +...+++..+.+.++|.++|.+|++
T Consensus 310 ~~~----------~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~ 379 (412)
T PF01306_consen 310 TNP----------WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ 379 (412)
T ss_dssp -SH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence 442 23334455555566666666668999999999999999985 6778899999999999999999875
Q ss_pred C
Q 008417 519 K 519 (566)
Q Consensus 519 ~ 519 (566)
.
T Consensus 380 ~ 380 (412)
T PF01306_consen 380 H 380 (412)
T ss_dssp H
T ss_pred H
Confidence 4
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-21 Score=190.11 Aligned_cols=407 Identities=16% Similarity=0.103 Sum_probs=241.9
Q ss_pred chHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhh-hhcchhhhccccc-CcCCCCCchHhHHHHH
Q 008417 134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPW-LIKPLYGFISDSL-PLFGYRRRSYLVLSGL 210 (566)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~-~~~~~~G~lsDr~-~~~G~grr~~~~~~~~ 210 (566)
+.+.++...+...+. ......+++|+ +++|++....+++..+..+.. +.+|++|.++||+ +|+| +||++++.+.+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~G-RRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFG-RRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCC-ChHHHHHHHHH
Confidence 344444444444444 45566677777 458999999999988875544 4499999999986 6788 77777777788
Q ss_pred HHHHHHHHHHhhcchHH-----------------HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHH
Q 008417 211 LGALSWSLMATIVESKY-----------------SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGS 273 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 273 (566)
...++.+++++ +++.+ ..+++..+..++......+..++++|.+|++++ +++..+++....
T Consensus 83 ~~~~~l~ll~~-~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-~~~~a~~~~~~~ 160 (477)
T TIGR01301 83 LVAFAVILIGF-AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-RTRIANAYFSFF 160 (477)
T ss_pred HHHHHHHHHHh-CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-HHHHHHHHHHHH
Confidence 88787777776 55432 223334445567777778889999999965433 234566666666
Q ss_pred hHHHHHHHHHHHhHh--hccc-------------ChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccc
Q 008417 274 SAFGGIVSSYFSGSM--VDAY-------------GVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFF 337 (566)
Q Consensus 274 ~~~g~~~g~~~~~~l--~~~~-------------gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 337 (566)
..+|.++|+.++++. .+.+ +.|+.|++.+++.++ .++..+..+|.+...+++.++++.++. ..
T Consensus 161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~-~~ 239 (477)
T TIGR01301 161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPP-SK 239 (477)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccc-cc
Confidence 689999999999875 2221 578999999888877 666777888876422211100000000 00
Q ss_pred cchHHHHHHHHHHhcc--cchhHHHHHHHHHhhcccchhhhH-HHHhh-ccCCChh------h---hhH-HHHHHHHHHH
Q 008417 338 ESSKQNMFQLWEAVKQ--PNVFLPTLFVFLWQATPHSDSAMF-YFTTN-ELGFTPE------F---LGR-VKFVTSVASL 403 (566)
Q Consensus 338 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~------~---~g~-~~~~~~~~~~ 403 (566)
...+..++++++.+++ +.++.+++..++..++......+. .+..+ .++-++. + .|. ....+.+...
T Consensus 240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344555555554 346666655555444322222221 11111 1222211 1 132 2345666666
Q ss_pred HHHHHHHHHhhcCCc-chhhHHHHHHHHHHHhHHHHhhhccc---c------cccccc--chhhhhHHHHHHHhhhhhhH
Q 008417 404 LGVGLYNGFLKNVPL-RKIFLANTIFGTALGMTQVFLVTGLN---R------KFGISD--EWFAIGDSLILTVLSQASFM 471 (566)
Q Consensus 404 ~~~~~~~~l~~r~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~--~~~~~g~~~~~~~~~~~~~~ 471 (566)
+.+++..++.+|+|+ |+...++.++.+++.+...+.....+ . .+.-.. .+..+......++.....+.
T Consensus 320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s 399 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS 399 (477)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH
Confidence 778888999999985 56667777777777666554432100 0 000000 01122222233333333333
Q ss_pred HHHHHHHhhCCC--CchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHHHHHhh-hhhhhccCCC
Q 008417 472 PVLVLAARLCPE--GMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLL-PLPLIGLLPQ 548 (566)
Q Consensus 472 ~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~ 548 (566)
.-++++++..++ +..|..+|+.|.+..+.+.+..+..|.+.+.+|-.. .. .+.+.++..++ ++...+.+|+
T Consensus 400 iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~-----~~-~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 400 IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGN-----LP-AFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----ee-HHHHHHHHHHHHHHHHHHhCCC
Confidence 333788888874 566999999999999999999999999888887543 22 33333333333 3334456777
Q ss_pred CCC
Q 008417 549 DSP 551 (566)
Q Consensus 549 ~~~ 551 (566)
.+.
T Consensus 474 ~~~ 476 (477)
T TIGR01301 474 PRV 476 (477)
T ss_pred CCC
Confidence 653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-20 Score=190.01 Aligned_cols=364 Identities=20% Similarity=0.266 Sum_probs=242.3
Q ss_pred HHHHHHHhhh-hhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhHhhhh
Q 008417 170 TAVISGFSSL-PWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI-VESKYSAALSILLGSLSVAFSDVVV 247 (566)
Q Consensus 170 ~g~~~s~~~~-~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~g~~~~~~~~~~ 247 (566)
.+...++..+ ..++.|+.|.++|+ .| .||+++.+..++..++.+++.+. ..+++...++.++..++.....+..
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~---~~-~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy 147 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADY---GG-RRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY 147 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc---cc-cchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555533 34448899999998 34 56666666667777777766663 3445666777788888999999999
Q ss_pred hhhhhhhhcccCcc-----------------------cccchhHHHHHHhHHHHHHHHHHHhHhhc--------ccChHH
Q 008417 248 DSMVVERARGESQS-----------------------VSGSLQSLCWGSSAFGGIVSSYFSGSMVD--------AYGVRF 296 (566)
Q Consensus 248 ~~~i~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~--------~~gwr~ 296 (566)
++++.|+.+++++. .|+++.+..++.+.+|.++.-++.-.+.. ..+.|.
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~ 227 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV 227 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence 99999999665440 12788888888888888888777665542 234688
Q ss_pred HHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhh
Q 008417 297 VFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSA 375 (566)
Q Consensus 297 ~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (566)
.+.+.++..++ .+...+++||.+.++...... .......++..+.+++..+.|.+...++..++|.-+......
T Consensus 228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-----~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~ 302 (477)
T PF11700_consen 228 AFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS-----SYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIIS 302 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch-----hHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 89999888777 667777888876632211110 001112233333444455567777777777777766555555
Q ss_pred hHHHHh-hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhhHHHHHHHHHHHhHHHH-hhhcccccccccc
Q 008417 376 MFYFTT-NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR--KIFLANTIFGTALGMTQVF-LVTGLNRKFGISD 451 (566)
Q Consensus 376 ~~~~~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 451 (566)
+...|. +++|++..+...+..+..+.+++|.++++++.||+|.| +.+.++.++..+..+...+ +... ..+...
T Consensus 303 ~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~---~~g~~~ 379 (477)
T PF11700_consen 303 FAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS---FFGLKS 379 (477)
T ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc---ccCccc
Confidence 544444 47999999999999999999999999999999999998 7776666655443333222 0000 111111
Q ss_pred chhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHH
Q 008417 452 EWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLII 530 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~ 530 (566)
.+-.....++.+...+ ...+.. ++.+++.|+++++..+|++.......+.+||++.|.+.+..|... ..+.
T Consensus 380 ~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r-------~g~~ 451 (477)
T PF11700_consen 380 PWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQR-------YGFL 451 (477)
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-------hHHH
Confidence 1222223333333333 344444 999999999999999999999999999999999999999987433 2233
Q ss_pred HHHHHHhhhhhhhccCCCCCCCC
Q 008417 531 LCNLSSLLPLPLIGLLPQDSPDS 553 (566)
Q Consensus 531 ~~~~~~~i~~~~~~~~~~~~~~~ 553 (566)
...++.+++++++..++.++.++
T Consensus 452 ~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 452 FLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHHHHHhhccchhhhh
Confidence 33344445555555666655443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-22 Score=199.46 Aligned_cols=343 Identities=15% Similarity=0.157 Sum_probs=246.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH-HH
Q 008417 154 AVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA-AL 231 (566)
Q Consensus 154 ~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 231 (566)
.+-..++++++.+..+++|+.++....+.+ +|+.+.+.|| +|.|++.++|.++..++.++..+ ++++|.+ +.
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-----fg~R~v~i~G~~v~~~g~~lssF-~~~i~~l~lt 140 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-----FGCRTVMIAGGLVAALGLLLSSF-ATSLWQLYLT 140 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-----cCchHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 445566678999999999999998555554 8999999999 99999999999999999999999 8888765 55
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHh
Q 008417 232 SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV 311 (566)
Q Consensus 232 ~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~ 311 (566)
.-++.|+|.++........+..++ +++|+.+.++...+..+|.++-|.+..++.+.+|||+.+++.+.+.+-.++.
T Consensus 141 ~gvi~G~G~~~~~~paiviv~~YF----~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~ 216 (509)
T KOG2504|consen 141 FGVIGGLGLGLIYLPAVVILGTYF----EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVA 216 (509)
T ss_pred HHHHhhccchhhhcchhhhhhhHh----HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 668899999999888888888887 4578999999999999999999999999999999999999999888665555
Q ss_pred heeeccccccC-CC---------------------c--CCCCCCCC------------CccccchHHHHHHH---HHHhc
Q 008417 312 AVLVKEQQVLG-PS---------------------R--RQNLPLGD------------PSFFESSKQNMFQL---WEAVK 352 (566)
Q Consensus 312 ~~~~~e~~~~~-~~---------------------~--~~~~~~~~------------~~~~~~~~~~~~~~---~~~~~ 352 (566)
...+++..... +. . .+.....+ ....+......... +++++
T Consensus 217 ~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~ 296 (509)
T KOG2504|consen 217 GALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK 296 (509)
T ss_pred HHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHc
Confidence 55554411110 00 0 00000000 00000000111111 46788
Q ss_pred ccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH--HHHHHHH
Q 008417 353 QPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFL--ANTIFGT 430 (566)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~--~~~~~~~ 430 (566)
++.++.+.+...+..+.+.....+++.+.+..|++..+++.+.++.++..+++.++.|++.|+...++... ++.++.+
T Consensus 297 ~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g 376 (509)
T KOG2504|consen 297 DPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG 376 (509)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence 88877777666666666656666677777889999999999999999999999999999999988544433 3333333
Q ss_pred HHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHH
Q 008417 431 ALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGA 509 (566)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g 509 (566)
+..+...+... . +.+....++++ +..+.+.... ..+.+.++.++-..++|+...+..++..+||.+.|
T Consensus 377 l~~~~~p~~~~---~-------~~l~~~~~~fG-~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 377 LARLFLPFATT---Y-------VGLIVFSILFG-FCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred HHHHHHHHhcc---H-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 33322221111 1 11222222222 2223333333 57889999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 008417 510 GLTQLFGV 517 (566)
Q Consensus 510 ~l~~~~g~ 517 (566)
++.|..|.
T Consensus 446 ~~~d~tg~ 453 (509)
T KOG2504|consen 446 LLYDITGN 453 (509)
T ss_pred eeeeccCC
Confidence 99998873
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=197.86 Aligned_cols=363 Identities=11% Similarity=0.102 Sum_probs=213.6
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhh-hhhhcchhhhcccccCcCCC-CCchHhHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSL-PWLIKPLYGFISDSLPLFGY-RRRSYLVLSGLL 211 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~-~~~~~~~~G~lsDr~~~~G~-grr~~~~~~~~~ 211 (566)
++.++...+...+. ......++.|+++++|++..+.+++.+.+.. .+...+++|+++|| + |||+.++++.++
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr-----~~G~r~~~~~g~~~ 97 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDK-----VLGTKRVIMLGAIV 97 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchHHHHHHHHHH
Confidence 45555555555554 4566678889988999999998888776643 34445688999999 7 999999999999
Q ss_pred HHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 212 GALSWSLMATIV-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 212 ~~~~~~~~~~~~-~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
..++.+++++ + ++.+.+++.++++|++.+...+...+++.|++++++ +++...+++.+.+.++|.++||.+++++.+
T Consensus 98 ~~ig~~l~~~-~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~-~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~ 175 (500)
T PRK09584 98 LAIGYALVAW-SGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD-PRLDGAFTMYYMSINIGSFFSMLATPWLAA 175 (500)
T ss_pred HHHHHHHHHH-hcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-hhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887 5 455667788999999999888888899999996543 344556778888889999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHhhe----eeccccccCCCcCCCCCCCCCcc----------------ccc-hHH-------
Q 008417 291 AYGVRFVFGVTALLPLITSGVAV----LVKEQQVLGPSRRQNLPLGDPSF----------------FES-SKQ------- 342 (566)
Q Consensus 291 ~~gwr~~f~i~~i~~~~~~~~~~----~~~e~~~~~~~~~~~~~~~~~~~----------------~~~-~~~------- 342 (566)
++|||+.|++.++..++.++..+ .+++..+. +..+ +.+...... .+. ...
T Consensus 176 ~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (500)
T PRK09584 176 KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFE-PINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVA 253 (500)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCcc-ccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999998865555332222 22332111 1000 000000000 000 000
Q ss_pred -----H-HHHHHH--HhcccchhHHHHH---HHHHhhcccchhhhHHHHh-hcc-----CCChhhhhHHHHHHHHHHHHH
Q 008417 343 -----N-MFQLWE--AVKQPNVFLPTLF---VFLWQATPHSDSAMFYFTT-NEL-----GFTPEFLGRVKFVTSVASLLG 405 (566)
Q Consensus 343 -----~-~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~-----g~~~~~~g~~~~~~~~~~~~~ 405 (566)
. .+...+ ...+++.+..+.. ..++...+.........+. +.. |+. ...+++.++..+..++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~ 332 (500)
T PRK09584 254 LGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIG 332 (500)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHH
Confidence 0 000000 0011122222111 1111111111111111111 111 211 12344445555444444
Q ss_pred HHH----HHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhh
Q 008417 406 VGL----YNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARL 480 (566)
Q Consensus 406 ~~~----~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~ 480 (566)
.++ ++++.+|.+..+.+.++.++.+++.+.+.+.....+..-.+. ..+.....+...++.....|.. +++.+.
T Consensus 333 ~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs--~~~~~~~~~l~~~ge~~~~p~g~s~~~~~ 410 (500)
T PRK09584 333 SPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVS--VNWLIASYGLQSIGELMISGLGLAMVAQL 410 (500)
T ss_pred HHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccC--HHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 444 466666666667788888888888776654432111000011 1122333333446667777776 899999
Q ss_pred CCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 481 CPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 481 ~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
.|++.||+++|+...... +|+.++|.+.+
T Consensus 411 aP~~~rg~~~g~~~l~~a----~g~~~~g~~~~ 439 (500)
T PRK09584 411 VPQRLMGFIMGSWFLTTA----GAALIAGYVAN 439 (500)
T ss_pred CcHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 999999999996554444 45555555554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=195.94 Aligned_cols=340 Identities=16% Similarity=0.135 Sum_probs=212.1
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHH
Q 008417 153 LAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAAL 231 (566)
Q Consensus 153 ~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 231 (566)
..+.+++..++|-+ ....|+.+...++.++ .|+.|.++|. ||||.+++.+.++..++.+.++. ++|...+++
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-----fGRr~~~i~g~~l~vvG~Iv~at-A~~~~~~ia 136 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-----FGRRYFFIIGSLLGVVGSIVCAT-AQNMNTFIA 136 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-----hcchHHHHHHHHHHHhHHHHhhc-CCcHHHHHH
Confidence 34445677778865 5566666667666665 7888999999 99999999999999999999998 999999999
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHH-H
Q 008417 232 SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITS-G 310 (566)
Q Consensus 232 ~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~-~ 310 (566)
+..+.|+|.+.... ....++|+.| .+.|.....+......+...+++.++..+..+.+|||.|++.+++..+.+ +
T Consensus 137 g~~l~GvgaG~~~~-~~~~isEl~p---~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 137 GMVLYGVGAGVQEL-AALAISELVP---NKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHhhHHHHH-HHHHHHHhcc---cchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 99999999887764 4556899994 44555555444433334444567777666667799999999998877733 3
Q ss_pred hheeeccccccCCCcCCC---CCCC------------------------C---Cc---------------------cccc
Q 008417 311 VAVLVKEQQVLGPSRRQN---LPLG------------------------D---PS---------------------FFES 339 (566)
Q Consensus 311 ~~~~~~e~~~~~~~~~~~---~~~~------------------------~---~~---------------------~~~~ 339 (566)
..++...+++.+.+.++. +..+ . .. .+|.
T Consensus 213 ~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~ 292 (599)
T PF06609_consen 213 IFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW 292 (599)
T ss_pred HHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh
Confidence 333332222211111110 0000 0 00 0000
Q ss_pred h---HHHHHHHHHHhcccchhHH-HHHHHHHhhcccchhhhHHHHhh-ccCCCh---hhhhHHHHHHHHHHHHHHHHHHH
Q 008417 340 S---KQNMFQLWEAVKQPNVFLP-TLFVFLWQATPHSDSAMFYFTTN-ELGFTP---EFLGRVKFVTSVASLLGVGLYNG 411 (566)
Q Consensus 340 ~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---~~~g~~~~~~~~~~~~~~~~~~~ 411 (566)
. ++++- -++++++++.+.. ++..++.++.+.....+.+.... .++-++ ...++......++..++..+.+.
T Consensus 293 ~~~~~~Pl~-P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~ 371 (599)
T PF06609_consen 293 FGAPKDPLF-PHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGL 371 (599)
T ss_pred hccCCCCcC-CHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHH
Confidence 0 00000 1356666543333 34555555544333333222222 234333 35677778888889999999999
Q ss_pred HhhcCCcchhhH-HHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHH
Q 008417 412 FLKNVPLRKIFL-ANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLF 490 (566)
Q Consensus 412 l~~r~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 490 (566)
+..++++-|..+ ++.+++.+..-.+. .....+. ...++..++.++..+....+.....+-.+|++..|++.
T Consensus 372 l~~~ir~~Kw~li~~~~~~ta~~Gama-~~~~~n~-------~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~ 443 (599)
T PF06609_consen 372 LFSKIRHIKWQLIFGSVLMTAFCGAMA-AVRPDNK-------NAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTAT 443 (599)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHH-HccCCCc-------chHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHH
Confidence 998887766554 55545443322222 2222221 12233344444444455555555566678999999999
Q ss_pred HHHHHHHhhhhhhHhHHHHHHH
Q 008417 491 ATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 491 g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
|+..+++.+|+.+|..+...+.
T Consensus 444 gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 444 GLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999988876655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=196.41 Aligned_cols=372 Identities=12% Similarity=0.093 Sum_probs=242.9
Q ss_pred CCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh----c--chHHHHHHHHHHHH
Q 008417 165 LDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI----V--ESKYSAALSILLGS 237 (566)
Q Consensus 165 ~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~----~--~~~~~l~~~r~l~g 237 (566)
.+....+.+..+..+|.++ |+++|++.|+ +|||+++...+++..++.+++++. + .-.+++.+.|++.|
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-----~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LG 155 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-----FGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLG 155 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhh
Confidence 4556677777778889888 7888999999 999999999999999999877763 1 22478899999999
Q ss_pred HHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc----c-----------cChHHHHHHHH
Q 008417 238 LSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD----A-----------YGVRFVFGVTA 302 (566)
Q Consensus 238 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----~-----------~gwr~~f~i~~ 302 (566)
+|.|.-+|...+..+|.. +.++||...+...+....|.+.|.+++-.+.. . .=||..|.+.+
T Consensus 156 iGIGGDYPlSAtI~SE~a---n~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~ 232 (538)
T KOG0252|consen 156 IGIGGDYPLSATIMSESA---NKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGA 232 (538)
T ss_pred ccccCCCcchHHHhhhhh---hhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999 66677777776666667777777666655431 1 12999999998
Q ss_pred HHHHHHHHhheeeccccccCCCcCCC-----CCC-CC-----------CccccchHHHHHHHHHHhcc---cchhHHHHH
Q 008417 303 LLPLITSGVAVLVKEQQVLGPSRRQN-----LPL-GD-----------PSFFESSKQNMFQLWEAVKQ---PNVFLPTLF 362 (566)
Q Consensus 303 i~~~~~~~~~~~~~e~~~~~~~~~~~-----~~~-~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 362 (566)
+..++.+...+.+||+++.+....++ .+. +. .......++..+.+.+.+.. +.++..+..
T Consensus 233 vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~ 312 (538)
T KOG0252|consen 233 VPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGT 312 (538)
T ss_pred HHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999987754111100 000 00 00001111112222222222 223333344
Q ss_pred HHHHhhcccchhhhHHHHhhccCCChhhhhH--------HHH-HHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHH
Q 008417 363 VFLWQATPHSDSAMFYFTTNELGFTPEFLGR--------VKF-VTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG 433 (566)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------~~~-~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~ 433 (566)
.|++-+..+....+.....+..|+.+..... ... +...+.+.|..+...++|++||++..+.+.+++.+..
T Consensus 313 WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~ 392 (538)
T KOG0252|consen 313 WFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFF 392 (538)
T ss_pred HHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHH
Confidence 4554444444444444444555655543332 122 2223334466666778999999999999999998887
Q ss_pred hHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 434 MTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
+.+...+... ........+.+ +..+++..+-.... .+.+|.+|.+.|++..|+..+.+.+|+.++....+++.
T Consensus 393 ~~~~~~y~~~---~~~~Gf~v~y~---l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t 466 (538)
T KOG0252|consen 393 FVIAGPYNQL---ENTIGFVVLYS---LTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLT 466 (538)
T ss_pred HHHcCCcccc---cccCceeehHH---HHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhh
Confidence 7665544421 11111111122 22222222222222 57789999999999999999999999999999999999
Q ss_pred H-----hcCCCCccchhhHHHHHHHHHHHhhhhhhhccCCCCCCCCCccch
Q 008417 513 Q-----LFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKES 558 (566)
Q Consensus 513 ~-----~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 558 (566)
+ ..|... .+.+.+.+.+++.++.+++||+++++.+|.+
T Consensus 467 ~~~yp~~~g~~~--------v~~i~~~~~~~gi~~T~l~pEtk~~~leei~ 509 (538)
T KOG0252|consen 467 DHNYPPNIGVRN--------VFIILAGCMLLGILFTLLIPETKGKSLEEIS 509 (538)
T ss_pred hccCCccccchH--------HHHHHHHHHHHhHheeEEeecccccCHHHhc
Confidence 8 444433 5666666777777777788998888776543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=182.09 Aligned_cols=333 Identities=17% Similarity=0.164 Sum_probs=208.1
Q ss_pred CCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Q 008417 164 HLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAF 242 (566)
Q Consensus 164 g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~ 242 (566)
+.+..-.|.+.+.+.+.-.+ +|.||.++|| +|||+++++|.+..++...+.+. +.|+..+++.|++.|+..+.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-----yGRkpvll~c~~~va~s~ll~~~-S~~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDR-----YGRKPVLLACLIGVALSYLLWAL-SRNFAAFVLARFLGGIFKGN 137 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhh-----hCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhccCc
Confidence 44566788888888887777 8999999999 99999999999999999999998 99996667779999999988
Q ss_pred HhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc---ccChHHHH---HHHHHHHHH-HHHhheee
Q 008417 243 SDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD---AYGVRFVF---GVTALLPLI-TSGVAVLV 315 (566)
Q Consensus 243 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~gwr~~f---~i~~i~~~~-~~~~~~~~ 315 (566)
.. +..++++|++++|++......++..+ .+|.++||.+||++.+ ..|--+.+ ++..++... .....+++
T Consensus 138 l~-v~rAiisdV~sek~r~l~ms~v~~a~---~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~l 213 (451)
T KOG2615|consen 138 LS-VIRAIISDVVSEKYRPLGMSLVGTAF---GLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFL 213 (451)
T ss_pred hH-HHHHHHHhhcChhhccceeeeeehhh---hcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 65 56889999997666555555555444 8999999999999987 23322212 122222222 34556788
Q ss_pred ccccccCCCcCCCCCCCCCcc--ccchHHHHHHHHHHhcccchhHHH-------HHHHHHhhcccchhhhHHHH-hhccC
Q 008417 316 KEQQVLGPSRRQNLPLGDPSF--FESSKQNMFQLWEAVKQPNVFLPT-------LFVFLWQATPHSDSAMFYFT-TNELG 385 (566)
Q Consensus 316 ~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~g 385 (566)
||+-+.++..+...+..+... .+..+.....-...++|+.....+ +-.++|...+.........+ ...+|
T Consensus 214 pETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg 293 (451)
T KOG2615|consen 214 PETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFG 293 (451)
T ss_pred CccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccC
Confidence 888553322211110000000 000011111122344554432211 22233333322222222222 24579
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHhhcCC--cchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHH
Q 008417 386 FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVP--LRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILT 463 (566)
Q Consensus 386 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 463 (566)
+++.+.|.+....++.+.+......+..+|.+ .+-.+.....++.-. +....+... . ..+.....+..
T Consensus 294 ~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~-----~llls~~~~---~--~~l~~~s~l~s 363 (451)
T KOG2615|consen 294 YSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPA-----FLLLSLART---P--VVLYLGSTLKS 363 (451)
T ss_pred CChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHH-----HHHHhcccc---c--hhhhHHHHHHH
Confidence 99999999998888888777777666666654 222222222222111 111111110 0 12223344444
Q ss_pred HhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 464 VLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
+.........+.++....|+++||+++|+..+.+.++.++||.++|.+..+.-
T Consensus 364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~ 416 (451)
T KOG2615|consen 364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ 416 (451)
T ss_pred HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence 44444444455888889999999999999999999999999999999987753
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=176.97 Aligned_cols=338 Identities=12% Similarity=0.049 Sum_probs=221.6
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHH
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY 227 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (566)
......+.+-+...+|.+..+..++......+..+ +-.||.++|+ +|||+.+.+..+..++..++-+. ++|+.
T Consensus 94 ~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-----~grr~~f~~T~l~t~v~~~is~~-spnf~ 167 (528)
T KOG0253|consen 94 MMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-----IGRRKGFNLTFLVTGVFGVISGA-SPNFA 167 (528)
T ss_pred HHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-----hhcchhhhhhHHHHHHHHHhhcC-CCCee
Confidence 44555566677778899999999998888999988 5689999999 99999999999999998888888 99999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH
Q 008417 228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 228 ~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~ 307 (566)
.++++|.+.|+|.|. .+...++-.|..|.. +|....-+. ....+|.++...+.-.+..++||||.....+....+
T Consensus 168 ~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~---~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~ 242 (528)
T KOG0253|consen 168 SLCVFRALWGFGVGG-LPVDSAIYLEFLPSS---HRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF 242 (528)
T ss_pred hhhHHHHHHhccCCC-ccHhHHHHHHhccCc---CCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Confidence 999999999999998 677777888888443 333332222 444799999999999999999999999999977777
Q ss_pred HHHhheeeccccccCCCcCCCCC------------------------------CCCCcccc----chHHHHHHHHHHh--
Q 008417 308 TSGVAVLVKEQQVLGPSRRQNLP------------------------------LGDPSFFE----SSKQNMFQLWEAV-- 351 (566)
Q Consensus 308 ~~~~~~~~~e~~~~~~~~~~~~~------------------------------~~~~~~~~----~~~~~~~~~~~~~-- 351 (566)
.....++++|+++....+.++.+ .+.....+ ..++...+..+++
T Consensus 243 ~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp 322 (528)
T KOG0253|consen 243 AARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSP 322 (528)
T ss_pred HHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcCh
Confidence 88888999999875322111100 00000000 0000111111111
Q ss_pred --cccchhHHHHHHHHHhhcccchhhh-----------------HHHHhhc-cCCCh-hhhhHH-HHHHHHHHHHHHHHH
Q 008417 352 --KQPNVFLPTLFVFLWQATPHSDSAM-----------------FYFTTNE-LGFTP-EFLGRV-KFVTSVASLLGVGLY 409 (566)
Q Consensus 352 --~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-~g~~~-~~~g~~-~~~~~~~~~~~~~~~ 409 (566)
++..++... ..|...+.++...-+ .+...+. .+-.. ....+. ..+..+..+.|.++.
T Consensus 323 ~lrkttlllw~-iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt 401 (528)
T KOG0253|consen 323 KLRKTTLLLWR-IWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLIT 401 (528)
T ss_pred HHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHH
Confidence 111111111 111111111110000 0111110 00000 011112 245677888999999
Q ss_pred HHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHH
Q 008417 410 NGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATL 489 (566)
Q Consensus 410 ~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 489 (566)
++++||+|||+.+....++.++..+++....... . ..+..+..-++..+.+...+.|..|++|...|+++
T Consensus 402 ~~iverlGRKkTMal~l~~f~iflfll~~c~~rn-~---------~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 402 GVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN-A---------YTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc-h---------hHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 9999999999999999888887766554433221 1 11111222224444455555789999999999999
Q ss_pred HHHHHHHHhhhhhhHhHHH
Q 008417 490 FATLMSISNGGSVLGGLLG 508 (566)
Q Consensus 490 ~g~~~~~~~lg~~i~~~~~ 508 (566)
.|..+.+..+|+.+.|.++
T Consensus 472 vGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hhhhhhHHhhhhhhhhHHH
Confidence 9999999999999999998
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=194.70 Aligned_cols=369 Identities=17% Similarity=0.108 Sum_probs=244.1
Q ss_pred hhcCCCHHHHHHHHHHhhhhhhhcc-hhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 008417 161 DDLHLDPAETAVISGFSSLPWLIKP-LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLS 239 (566)
Q Consensus 161 ~~~g~s~~~~g~~~s~~~~~~~~~~-~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~ 239 (566)
+.+..+.....+..+++.+|.++++ ++|+++|| +|||++++++.++..++.+..++ ++|++.++++|++.|++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-----~GRk~~~~~~~~~~~i~~~~~a~-a~~~~~~~~~Rfl~G~~ 184 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-----FGRKPVLLVSLLLFIIFGILTAF-APNYWMFLIFRFLSGFF 184 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-----cccHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHhh
Confidence 4467788889999999999999976 56999999 99999999999999999999999 99999999999999999
Q ss_pred HHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhheeecccc
Q 008417 240 VAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQ 319 (566)
Q Consensus 240 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~ 319 (566)
.+........++.|++ .+++|+.+..+ ......++.+++.+++++.. +|||.+++..+..++.++.+++.+|++
T Consensus 185 ~~~~~~~~~~~~~E~~---~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 185 GSGPLTVGFGLVAEIV---SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred ccchhHHhHhhheeec---CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 9999999999999999 66677777776 55557888888988888886 899999999999988766677777998
Q ss_pred ccCCCcCCCCCC------------CCCccccchHHH--H-----------HHHHHHhcccchhHHHHHHHHHhhcccchh
Q 008417 320 VLGPSRRQNLPL------------GDPSFFESSKQN--M-----------FQLWEAVKQPNVFLPTLFVFLWQATPHSDS 374 (566)
Q Consensus 320 ~~~~~~~~~~~~------------~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (566)
++...+.+.++. +.....+..+.. . ..+..+++.+++....++..+..+......
T Consensus 259 rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y 338 (521)
T KOG0255|consen 259 RWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVY 338 (521)
T ss_pred HHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 874333221110 000100000000 0 012334444433333322222221111111
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchh
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWF 454 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (566)
.-..+....+|.+. .......+.....+....+...++.|||.....+..+..++.+...+....... +.
T Consensus 339 ~gl~~~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 408 (521)
T KOG0255|consen 339 YGLSLNVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG-------WL 408 (521)
T ss_pred HhhhhhhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh-------HH
Confidence 11122222233332 223344444667777777899999999999999888888887776555443220 01
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHHH
Q 008417 455 AIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNL 534 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 534 (566)
......+.....+.++...+.+..|..|...|..+.+..+....++..++|.+.......... ..... ...+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~-------~~~~~-~~~~ 480 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPL-------LGLIL-FGWL 480 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------chHHH-HHHH
Confidence 122222223344455555568899999999999999999999999999999987655542211 11111 2222
Q ss_pred HHhhhhhhhccCCCCCCCCCccchh
Q 008417 535 SSLLPLPLIGLLPQDSPDSTSKESE 559 (566)
Q Consensus 535 ~~~i~~~~~~~~~~~~~~~~~~~~~ 559 (566)
..+.+++...++|+++.+...+..+
T Consensus 481 ~~l~~~~~~~~lpet~~~~l~~t~~ 505 (521)
T KOG0255|consen 481 ALLLGLLSLLLLPETKGKPLPGTLL 505 (521)
T ss_pred HHHHHHHHHhcCcccCCCCCchhHH
Confidence 3333334445788888776654433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=205.72 Aligned_cols=284 Identities=13% Similarity=0.038 Sum_probs=204.3
Q ss_pred HHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHH
Q 008417 140 MVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWS 217 (566)
Q Consensus 140 ~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~ 217 (566)
+.++.+.+. ++....++ .++++|+++..+.|++.+.+.+++++ .++.|++.|| ++||+++.++.++++++.+
T Consensus 40 ~~~~~~~~~~g~~~~~l~-~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-----~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 40 CAQLQGLLYNGLVNSSLT-TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-----LHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHhhch-hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-----cCcceEEEecHHHHHHHHH
Confidence 344555544 34444444 55677999999999999999999888 6788999999 9999999999999999999
Q ss_pred HHHhhcc---------------------------------------------------hHHHHHHHHHHHHHHHHhHhhh
Q 008417 218 LMATIVE---------------------------------------------------SKYSAALSILLGSLSVAFSDVV 246 (566)
Q Consensus 218 ~~~~~~~---------------------------------------------------~~~~l~~~r~l~g~~~~~~~~~ 246 (566)
++++ ++ .+..++++|+++|+|.+...+.
T Consensus 114 l~al-phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 114 LLSL-PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHhC-hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 8876 42 2456789999999999999999
Q ss_pred hhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc----------------------ChHHHHHHHHHH
Q 008417 247 VDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY----------------------GVRFVFGVTALL 304 (566)
Q Consensus 247 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------gwr~~f~i~~i~ 304 (566)
..+++.|++ ++++|+...++.+....+|.++|+++++++.+.+ +|+..|++.+++
T Consensus 193 ~~~~i~d~~---~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l 269 (633)
T TIGR00805 193 GISYIDDFA---KSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV 269 (633)
T ss_pred CchhhhccC---CccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999 6677888999999999999999999999987543 277788888888
Q ss_pred HHHHHHhheeeccccccCCC-cC---CCCCC--C--CCc---cccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccch
Q 008417 305 PLITSGVAVLVKEQQVLGPS-RR---QNLPL--G--DPS---FFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSD 373 (566)
Q Consensus 305 ~~~~~~~~~~~~e~~~~~~~-~~---~~~~~--~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (566)
.++..+.++++|++.+.... .+ .+++. + .+. .....++..+..++++++|.++...+..++........
T Consensus 270 ~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~ 349 (633)
T TIGR00805 270 ALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGY 349 (633)
T ss_pred HHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 77754445556654321111 00 00000 0 000 00112233456778899998888776666655544444
Q ss_pred hhhHHHHh-hccCCChhhhhHHHHHHHH-HHHHHHHHHHHHhhcCCc--chhhHHHHHHHHHHH
Q 008417 374 SAMFYFTT-NELGFTPEFLGRVKFVTSV-ASLLGVGLYNGFLKNVPL--RKIFLANTIFGTALG 433 (566)
Q Consensus 374 ~~~~~~~~-~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~r~g~--~~~~~~~~~~~~~~~ 433 (566)
..+.+.|. +.+|+++.+++++.....+ +.+++.++.|++.||++. ++.+.++.++..+..
T Consensus 350 ~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 350 ITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 44544444 4689999999999877665 678999999999999984 455555555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=166.87 Aligned_cols=328 Identities=16% Similarity=0.098 Sum_probs=250.7
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
..++...+++++|+|.+..|+++++..+.+.+ +|+..+++.| +|-++.+..++++.+++.++=.. . +.+.++
T Consensus 31 vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-----~g~er~l~~~Llli~~G~~iR~~-~-~~~~L~ 103 (395)
T COG2807 31 VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-----FGEERSLFLALLLIAAGILIRSL-G-GLPLLF 103 (395)
T ss_pred hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----HhhHHHHHHHHHHHHHHHHHHhc-c-cHHHHH
Confidence 34555678889999999999999999888877 8899999999 99999999999999999888775 3 788889
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc-ChHHHHHHHHHHHHHHH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLPLITS 309 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gwr~~f~i~~i~~~~~~ 309 (566)
.+-.+.|.|.+..++..++++-+.+ +++.+.+++++.....+|..+++.+.-.+.++. |||....+.+.++++.+
T Consensus 104 ~gt~l~G~gIav~nVLLPslIK~~F----pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl 179 (395)
T COG2807 104 LGTLLAGAGIAVINVLLPSLIKRDF----PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL 179 (395)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHhhc----ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH
Confidence 9999999999988888888777777 345677788888888899999999999888877 79999999999988877
Q ss_pred HhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChh
Q 008417 310 GVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPE 389 (566)
Q Consensus 310 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 389 (566)
+.++.-...++ ... .+...++-.+++++|..|...+++.+..+.+++...+++.+..+.|+|..
T Consensus 180 ~~WlPq~~r~~-~~~---------------~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~ 243 (395)
T COG2807 180 LIWLPQALREQ-AAS---------------IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAA 243 (395)
T ss_pred HHHhhhccccc-ccc---------------cccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHH
Confidence 66654321111 110 00111122346889999999999999888888888888888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCc-chhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhh
Q 008417 390 FLGRVKFVTSVASLLGVGLYNGFLKNVPL-RKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQA 468 (566)
Q Consensus 390 ~~g~~~~~~~~~~~~~~~~~~~l~~r~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 468 (566)
+.|.+.....+..++..+..+.+.+|... |........++.++.+.+.+.+......+ .+.+| .+..
T Consensus 244 ~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-----~~llG-------~G~G 311 (395)
T COG2807 244 EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-----ALLLG-------LGQG 311 (395)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-----HHHHh-------Cccc
Confidence 99999999999999999999999997654 44555555555566555554333211100 13333 4444
Q ss_pred hhHHHH-HHHHhh-CCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 469 SFMPVL-VLAARL-CPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 469 ~~~~~~-~~~~~~-~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
..+|.. ..+... .+++..++-.|+.+.++++-.++||.+.|++.|..|-.
T Consensus 312 ~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 312 GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 444444 455444 45677888899999999999999999999999998743
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=169.19 Aligned_cols=351 Identities=20% Similarity=0.195 Sum_probs=241.4
Q ss_pred HHHHHHHHHh-hhhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHhHh
Q 008417 168 AETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE--SKYSAALSILLGSLSVAFSD 244 (566)
Q Consensus 168 ~~~g~~~s~~-~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~g~~~~~~~ 244 (566)
+..+...++. .+-.++.|+.|.++|. .| .||+++-+...+..++.+++.+..+ +++..+++..+..++.....
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~---~g-~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~ 133 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADY---PG-PRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSN 133 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcc---CC-CcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhh
Confidence 4455555555 3344558999999999 55 6777777777888888887777444 45667788889999999999
Q ss_pred hhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHh--Hh-h---------------cccChHHHHHHHHHHHH
Q 008417 245 VVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG--SM-V---------------DAYGVRFVFGVTALLPL 306 (566)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--~l-~---------------~~~gwr~~f~i~~i~~~ 306 (566)
+..++++.+.. ++++.++..+..+....+|+.+.-++.- .+ . +...-|..+.+.++..+
T Consensus 134 Vfyds~L~~~~---~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~l 210 (438)
T COG2270 134 VFYDSMLPRLT---TKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWL 210 (438)
T ss_pred eehhhHhhhhc---CccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHH
Confidence 99999999999 5555556666666666677666554431 11 1 22346888999988888
Q ss_pred H-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhh-cc
Q 008417 307 I-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTN-EL 384 (566)
Q Consensus 307 ~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 384 (566)
+ .+-+++..++.++..... .....+..++...++++..+++.+...++..++|.-+......+-..|.. ++
T Consensus 211 i~~iPm~~~v~~~~~~~~~~-------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~ 283 (438)
T COG2270 211 LFALPMILNVHDAEKISSPP-------PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADL 283 (438)
T ss_pred HHHhHHHhcccccccccccc-------hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 8 555666666655421010 01111233444445556666777777777777777655555555555555 79
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHH
Q 008417 385 GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTV 464 (566)
Q Consensus 385 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 464 (566)
|++..+..++.....+.+++|.+++|++.+|+|.|+++.++.++..+.++...+..... -.+...++.+.
T Consensus 284 gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~----------~f~i~gll~g~ 353 (438)
T COG2270 284 GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGEL----------DFWILGLLVGT 353 (438)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccH----------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888877766554433311 11112233333
Q ss_pred hhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHHHHHhhhhhhhc
Q 008417 465 LSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIG 544 (566)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 544 (566)
..+......-++..+.+|+++.++.+|+++..+..++.+||.+.+.+.+..|-.. ..+....++..++++.+.
T Consensus 354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r-------~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSR-------AGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchh-------hHHHHHHHHHHhhHhhEE
Confidence 3333443333999999999999999999999999999999999999999987644 122233333445555555
Q ss_pred cCCCC
Q 008417 545 LLPQD 549 (566)
Q Consensus 545 ~~~~~ 549 (566)
..|..
T Consensus 427 ~v~~~ 431 (438)
T COG2270 427 RVKVP 431 (438)
T ss_pred eecCC
Confidence 55554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=175.70 Aligned_cols=351 Identities=12% Similarity=0.019 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHH-HHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 136 FAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAE-TAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~-~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
+.+|+.+|...+-.. .+...+++.+++|++.++ .|.+.+++..+|++ +.+.|.++|| +|.|+++.++.+...
T Consensus 30 ~~lC~fGF~~e~R~n-~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-----lG~K~vL~l~~l~Ws 103 (511)
T TIGR00806 30 LYLCFYGFMAQFRPG-ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-----LRYKPVLVLQALSFV 103 (511)
T ss_pred HHHHHHHHHHHhhch-HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHH
Confidence 335555555555322 333455777789999999 99999999999999 6788999999 999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 214 LSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
+..+++++ +.++..+.+.|++.|++.+... +...++..++ ++++|+++.++..++..+|.+++++++++ ...+|
T Consensus 104 l~t~L~~f-a~Sl~~L~i~R~llGvaEA~~~-A~~syI~~Wf---P~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g 177 (511)
T TIGR00806 104 CVWLLLLL-GTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLV---PPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG 177 (511)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 99999999 8999999999999999999998 9999999999 77888999999999999999999999999 45689
Q ss_pred hHHHHHHH---HHHHHHHHHhheeeccccccC---CCc--------CCCCCCCC-C--cc-------ccchHHHHHHHHH
Q 008417 294 VRFVFGVT---ALLPLITSGVAVLVKEQQVLG---PSR--------RQNLPLGD-P--SF-------FESSKQNMFQLWE 349 (566)
Q Consensus 294 wr~~f~i~---~i~~~~~~~~~~~~~e~~~~~---~~~--------~~~~~~~~-~--~~-------~~~~~~~~~~~~~ 349 (566)
||+-+.+. .....++++..+++|.+++.. ..+ +.+....+ . .. ....+..+.++..
T Consensus 178 Wr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (511)
T TIGR00806 178 WISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVT 257 (511)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHH
Confidence 99765544 223333566667777544310 000 00000000 0 00 0111233455666
Q ss_pred HhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCC-ChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 008417 350 AVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGF-TPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF 428 (566)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~ 428 (566)
..+|+.++...+...+...++.....+....-+...- .+..-|.+-++..+.+.+..+..|++-.++.+...+.++.+.
T Consensus 258 ~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s 337 (511)
T TIGR00806 258 IYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVS 337 (511)
T ss_pred HhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence 7788887777765544443333333332222222211 122556666777777888888889886555332233333333
Q ss_pred HHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhH
Q 008417 429 GTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGL 506 (566)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~ 506 (566)
..-+.+++. +....+. |......+++.............-+++....+.-|.++|+++++.-+-+.+-..
T Consensus 338 ~~~~gll~~-m~~t~~I-------w~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~ 407 (511)
T TIGR00806 338 AIQAGLVFW-MSQSHDI-------WVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITA 407 (511)
T ss_pred HHHHHHhhh-hhcccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence 333333222 2222222 344444444444444444433466677777788899999988877776665444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-18 Score=162.27 Aligned_cols=366 Identities=17% Similarity=0.172 Sum_probs=249.8
Q ss_pred HHhhcCCCHHHHHHHHHHhhhhhhhcchhhhcccccC-cCCCCCchHhHHHHHHHHHHHHHHHhh----cc-------hH
Q 008417 159 LKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLP-LFGYRRRSYLVLSGLLGALSWSLMATI----VE-------SK 226 (566)
Q Consensus 159 l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~~-~~G~grr~~~~~~~~~~~~~~~~~~~~----~~-------~~ 226 (566)
+..|++++...++.+.++..+.....+.+|..||+.+ .+|++|-|++..+.++.+.+..++.+. .. +.
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 3456899999999988877777677889999999986 899999999999999888876666543 22 22
Q ss_pred ----HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHH---
Q 008417 227 ----YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFG--- 299 (566)
Q Consensus 227 ----~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~--- 299 (566)
....+...+.|+|.+...+...+++.|.. ++++|.++.++.+....+|.+++..+.+.+.+.+...-...
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~---~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~ 162 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLA---PEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ 162 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcC---CHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 13356677889999999999999999999 67788899999999999999999999999887766433322
Q ss_pred HHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHH
Q 008417 300 VTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYF 379 (566)
Q Consensus 300 i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (566)
..+++.++..++..+-.|++..+..+.+++ ++ ...++.+ .++..+|+...+..+.++..+.+..-...+-+
T Consensus 163 ~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~--~~----~~f~~a~---~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEP 233 (403)
T PF03209_consen 163 GVALIALLLNLIALWGQEPRRSRRAAAAER--PR----PPFREAW---RQVWASPQARRFFVFLFLGTLAFFMQDVILEP 233 (403)
T ss_pred HHHHHHHHHHHHHHHhcccCCcccccCCCC--CC----ccHHHHH---HHHHhCCChhHHHHHHHHHHHHHHhhHHHcCC
Confidence 223333332233344445444332211110 00 1233333 34457777777777777666555454444433
Q ss_pred H-hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhh
Q 008417 380 T-TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLK-NVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIG 457 (566)
Q Consensus 380 ~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~-r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 457 (566)
| .+.+|++..+...++.....+.+++..+.+++.. |.++++...+++....++..++.+.....+. +.+..
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~-------~~~~~ 306 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSP-------WLFRP 306 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccc-------hHHHH
Confidence 3 4557999999999999999999999999888776 6677777777777777766555443221111 22223
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC--ccchhhHHHHHHHHHH
Q 008417 458 DSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK--DSFDNLATLIILCNLS 535 (566)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~--~~~~~~~~~~~~~~~~ 535 (566)
..++.++..+.......+.+.+...+++.|..+|+....+.++..++..++|.+.|....-. .....+...+.+-++.
T Consensus 307 ~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~l 386 (403)
T PF03209_consen 307 GVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVL 386 (403)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 33333333343333444888899999999999999999999999999999999998753221 1233445555555555
Q ss_pred Hhhhhhhh
Q 008417 536 SLLPLPLI 543 (566)
Q Consensus 536 ~~i~~~~~ 543 (566)
.++++...
T Consensus 387 l~~a~~ll 394 (403)
T PF03209_consen 387 LLAALVLL 394 (403)
T ss_pred HHHHHHHH
Confidence 55555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-25 Score=227.30 Aligned_cols=370 Identities=15% Similarity=0.138 Sum_probs=237.0
Q ss_pred HHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHhH
Q 008417 168 AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE---SKYSAALSILLGSLSVAFS 243 (566)
Q Consensus 168 ~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~g~~~~~~ 243 (566)
.+.++..+...++..+ .++.|.++|| +|||+.++++.++..++.++.++ ++ +++.++++|++.|++.|..
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-----~GRk~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADR-----YGRKPALIISALLMIIGSILIAF-APSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccc-----ccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 4577888888899888 5677999999 99999999999999999999998 88 9999999999999999999
Q ss_pred hhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc---cChHHHHHHHHHHHHHHHHhheeeccccc
Q 008417 244 DVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA---YGVRFVFGVTALLPLITSGVAVLVKEQQV 320 (566)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~gwr~~f~i~~i~~~~~~~~~~~~~e~~~ 320 (566)
.+....++.|.. ++++|+...++...+..+|.+++..++..+... .+||+.+++.+++.++.++..+++||+|+
T Consensus 120 ~~~~~~~~~E~~---~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~ 196 (451)
T PF00083_consen 120 YVVSPIYISEIA---PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPR 196 (451)
T ss_pred cccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 555666666666666678888887776555433 34999999999988887777789999998
Q ss_pred cCCCcCCCCCCCC------------CccccchHHHH------HHHHHHhcccc----hhHHHHHHHHHhhc-ccchhhhH
Q 008417 321 LGPSRRQNLPLGD------------PSFFESSKQNM------FQLWEAVKQPN----VFLPTLFVFLWQAT-PHSDSAMF 377 (566)
Q Consensus 321 ~~~~~~~~~~~~~------------~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~ 377 (566)
+...+++.++.++ ++..+..++.. ....++++++. ....+.......+. ......+.
T Consensus 197 wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 276 (451)
T PF00083_consen 197 WLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS 276 (451)
T ss_pred eecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 7543332221100 00000000000 11223344322 11111112111111 11222222
Q ss_pred HHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHH--Hhhhcccc-ccccccchh
Q 008417 378 YFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQV--FLVTGLNR-KFGISDEWF 454 (566)
Q Consensus 378 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 454 (566)
....+..+.+.. -.......+..+++.++...+.||+|||+++..+..+..++.+.+. ........ .... .
T Consensus 277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 350 (451)
T PF00083_consen 277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI----L 350 (451)
T ss_pred cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----c
Confidence 333344565555 2222344556667777777999999999999888877776665553 11111110 0000 0
Q ss_pred hhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHH
Q 008417 455 AIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCN 533 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 533 (566)
.+....+........+.+.. .+..|.+|.+.|+++.|+...+..+++.+++.+...+.+..+... ....+. .
T Consensus 351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~-----~~~i~~--~ 423 (451)
T PF00083_consen 351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWG-----VFLIFA--G 423 (451)
T ss_pred cceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cchhhH--H
Confidence 11111111113333444555 778999999999999999999999999999999888887766222 112222 2
Q ss_pred HHHhhhhhhhccCCCCCCCCCccchh
Q 008417 534 LSSLLPLPLIGLLPQDSPDSTSKESE 559 (566)
Q Consensus 534 ~~~~i~~~~~~~~~~~~~~~~~~~~~ 559 (566)
++.+..++.+.++||++++..+|.++
T Consensus 424 ~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 424 VCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred HHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 22233344566899999988776554
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-21 Score=170.76 Aligned_cols=384 Identities=15% Similarity=0.139 Sum_probs=240.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhc-chhhhcccccCcCCCCCchHhHHHHHHHHHHH
Q 008417 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIK-PLYGFISDSLPLFGYRRRSYLVLSGLLGALSW 216 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~-~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~ 216 (566)
+|++.|.+.+..-...++..+++.+.+++.++..++.+++.++.++- .+.|++.||. +| -|..-++-++...++.
T Consensus 49 mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~--fg--ir~gtii~~~fv~~Gq 124 (459)
T KOG4686|consen 49 MCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR--FG--IRLGTIILCIFVFLGQ 124 (459)
T ss_pred HHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh--hh--hhHHHHHHHHHHHHHH
Confidence 44444444444445667777888888999999999999999999884 5669999983 44 4433333333444444
Q ss_pred HHHHh--hcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccCh
Q 008417 217 SLMAT--IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV 294 (566)
Q Consensus 217 ~~~~~--~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw 294 (566)
++.+. ..+.+|.+..+|++.|+|+-...++.+.+...++ +-++.+.++|+......+|..+--.+.+++++..+-
T Consensus 125 liFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wF---KGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~ 201 (459)
T KOG4686|consen 125 LIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWF---KGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR 201 (459)
T ss_pred HHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEe---cCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence 44432 1688999999999999999999999999999999 555667777777766678888777777777654321
Q ss_pred ------HH---HHHHHHHHH-HHHHHhhe--eeccccccCC-CcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHH
Q 008417 295 ------RF---VFGVTALLP-LITSGVAV--LVKEQQVLGP-SRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTL 361 (566)
Q Consensus 295 ------r~---~f~i~~i~~-~~~~~~~~--~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (566)
+. .....+... ...+++.+ -..+++.++. +.++... .....+.+.. -..|.+|...+
T Consensus 202 ~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~--------Ge~pkLtdv~--~f~ppfw~~~i 271 (459)
T KOG4686|consen 202 MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFL--------GEEPKLTDVN--TFYPPFWVLVI 271 (459)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcc--------cCCccccccc--ccCccHHHHHH
Confidence 11 111111111 11222221 1122211110 0010000 0000111110 11466777777
Q ss_pred HHHHHhhcccchhhh-HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh
Q 008417 362 FVFLWQATPHSDSAM-FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV 440 (566)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 440 (566)
..++|.....-+... ..++.+.+|+|+..++.+.+.....+.+.+.+.|.++||+|++.....+.++..+..=....+
T Consensus 272 icv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F- 350 (459)
T KOG4686|consen 272 ICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF- 350 (459)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-
Confidence 777666533322222 445677899999999999988888888999999999999998887777666655543333222
Q ss_pred hccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCc
Q 008417 441 TGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKD 520 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~ 520 (566)
..++.+.+ ...+| ..+. ....... -.++.++|+++.|+++|..+++.++|-++.|.+.|.+.+.-|-
T Consensus 351 t~lsPy~~----m~~lG--Lsys-llAcslW---P~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~--- 417 (459)
T KOG4686|consen 351 TFLSPYTS----MTFLG--LSYS-LLACSLW---PCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS--- 417 (459)
T ss_pred hhccHHHH----HHHHh--hhHH-HHHHHHh---hhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc---
Confidence 22222211 11222 0001 1111122 4677889999999999999999999999999999999987552
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhccCCCCCCCC
Q 008417 521 SFDNLATLIILCNLSSLLPLPLIGLLPQDSPDS 553 (566)
Q Consensus 521 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 553 (566)
+.++-.+++++..++++....++++.+++...
T Consensus 418 -y~~le~ffl~~~~~aL~svgil~~~N~kq~gn 449 (459)
T KOG4686|consen 418 -YDNLEAFFLIIGLMALTSVGILFYLNKKQSGN 449 (459)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHhheeccccCC
Confidence 33455667777777777776666665554433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-18 Score=168.05 Aligned_cols=368 Identities=14% Similarity=0.085 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCC-CCchHhHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGY-RRRSYLVLSGLL 211 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~-grr~~~~~~~~~ 211 (566)
++.++...+...+. ......++.|+.+++|++..+.+.+.+.+.....+ .++.|+++|| + |||+.++++.++
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDR-----ilGrrr~iliG~il 85 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADK-----VLGNRMAVMLGALL 85 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----ccCcHHHHHHHHHH
Confidence 44444444444544 44567788898888999999999998888766555 5678999999 8 999999999999
Q ss_pred HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 212 GALSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 212 ~~~~~~~~~~~~~-~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
..++.++++. .. +...+++...+..+|.+...+...++++|.+|+++ ++|...+++.+.+.++|..++|.+.+++.+
T Consensus 86 ~~lg~lll~~-~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~-~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 86 MAIGHVVLGA-SEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD-PRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred HHHHHHHHHH-hhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC-ccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998877764 32 22334444455556666666677889999996543 357778899999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHhheeeccccccC-CCcCCCCCCCCCcc---------------cc-c-hHHHHHH------
Q 008417 291 AYGVRFVFGVTALLPLITSGVAVLVKEQQVLG-PSRRQNLPLGDPSF---------------FE-S-SKQNMFQ------ 346 (566)
Q Consensus 291 ~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~---------------~~-~-~~~~~~~------ 346 (566)
.+||++.|.+.++..++.++..++.++...+. ..+++..+.++... .. . ..+....
T Consensus 164 ~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (493)
T PRK15462 164 EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVA 243 (493)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998765555444433322211110 00000000000000 00 0 0000000
Q ss_pred -------H---H-HHh---cccchhHHH---HHHHHHhhcccchhhhHHHHhhc-c-----CCChhhhhHHHHHHHHHHH
Q 008417 347 -------L---W-EAV---KQPNVFLPT---LFVFLWQATPHSDSAMFYFTTNE-L-----GFTPEFLGRVKFVTSVASL 403 (566)
Q Consensus 347 -------~---~-~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~g~~~~~~~~~~~ 403 (566)
+ . ... .+++++..+ +...++...+.........|.++ . |+. -...+..+++.+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii 322 (493)
T PRK15462 244 TIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVM 322 (493)
T ss_pred HHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHH
Confidence 0 0 000 012222222 11111222111112222233322 1 221 123444556666555
Q ss_pred HHHHHHHHHhhcCCc--c-----hhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-H
Q 008417 404 LGVGLYNGFLKNVPL--R-----KIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-V 475 (566)
Q Consensus 404 ~~~~~~~~l~~r~g~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 475 (566)
+.+++..++-.|..+ | .-+.++.++.+++.+.+.+........-.++ ..++....+....+.....|+- +
T Consensus 323 ~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s--~~wl~~~~~~~t~gEl~~sPvgls 400 (493)
T PRK15462 323 LCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSS--LPLMVLGLAVMGFAELFIDPVAMS 400 (493)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcC--HHHHHHHHHHHHHHHHHHChHHHH
Confidence 555555554333311 1 1366777777777766644332211111122 2333444555567788888888 9
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhc
Q 008417 476 LAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 476 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~ 515 (566)
.+++..|++.+|..+|+.... +.++++.++|.+.+..
T Consensus 401 ~~~~laP~~~~g~~mg~w~l~---~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 401 QITRIEIPGVTGVLTGIYMLL---SGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHhChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 999999999999999997432 2245555555555544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-17 Score=154.40 Aligned_cols=267 Identities=14% Similarity=0.117 Sum_probs=182.1
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc-----------
Q 008417 223 VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA----------- 291 (566)
Q Consensus 223 ~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------- 291 (566)
..+++.+++..++.|.|.+...+..+.+++++.++ +++.+.+++..+...+|.++||++++.+...
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~---~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~ 83 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPI---ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVAT 83 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc---chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 67889999999999999999999999999999944 4455566777777799999999999987731
Q ss_pred -----cChHHHHHHHHHHHHHHHHhheee--ccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHH
Q 008417 292 -----YGVRFVFGVTALLPLITSGVAVLV--KEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF 364 (566)
Q Consensus 292 -----~gwr~~f~i~~i~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (566)
..|+++|++.+.+.++..+.+.+. ||.+++ +.++.. ++ +. .+.++.+++|.++...+..+
T Consensus 84 ~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~--~~~~~~--~~----~~-----~~~~~~~~~~~~~l~~~~~f 150 (310)
T TIGR01272 84 ANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEA--DVARVS--SG----DT-----TQKTSAFQFTHLVLGALGIF 150 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc--cccccc--cc----cc-----cchhhHHhhHHHHHHHHHHH
Confidence 479999997776655533343333 432221 111000 00 00 01123456677777667777
Q ss_pred HHhhcccchhhhHHHHhhc---cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhh
Q 008417 365 LWQATPHSDSAMFYFTTNE---LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVT 441 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 441 (566)
+|.........+...|..+ +|+++.+.+........+.++|+++.+++.||++.++.+.++.++..+..++.... .
T Consensus 151 ~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-~ 229 (310)
T TIGR01272 151 VYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-H 229 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 7776666666666666543 58999999999999999999999999999999999998877776666554333221 1
Q ss_pred ccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 442 GLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 442 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.. .... ...+.+ ++.....|.. +...+..|+ +.+++.++. ....+|++++|.+.|.+.|..|...
T Consensus 230 ~~---------~~~~-~~~l~g-~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~ 295 (310)
T TIGR01272 230 GY---------VAMW-FVLALG-LFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQL 295 (310)
T ss_pred CH---------HHHH-HHHHHH-HHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchH
Confidence 11 0011 111222 3333444443 666676664 456666664 6778999999999999999888654
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-16 Score=151.42 Aligned_cols=367 Identities=14% Similarity=0.133 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcC----CCHHHHHHHHHHh-hhhhhhcchhhhcccccCcCCCCCchHhHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLH----LDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVLS 208 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g----~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~ 208 (566)
.+.++..-+..-+. .-+...+..|+..+++ ++.++..-+.+.+ .+.|....+.|+++||+ .|+|+.++++
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~----LG~~~tI~lG 98 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV----LGTRRTIVLG 98 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHH
Confidence 44444444544444 3445566667766666 9888877777777 78888888899999996 6899999999
Q ss_pred HHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHh
Q 008417 209 GLLGALSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286 (566)
Q Consensus 209 ~~~~~~~~~~~~~~~--~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 286 (566)
.++..++.+.++. + .....+++..++.++|.|..-+....+++|.+++++++ |-..+++++++.++|++++|++.+
T Consensus 99 ail~~iGh~~L~~-~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGsl~~p~i~~ 176 (498)
T COG3104 99 AILMAIGHLVLAI-SSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIGSLIAPIITG 176 (498)
T ss_pred HHHHHHHHHHHhc-cccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehHHHHHHHHHH
Confidence 9999999999997 5 46778888999999999999999999999999987776 788889999999999999999999
Q ss_pred HhhcccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccc----------------cc-hHHHHH----
Q 008417 287 SMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFF----------------ES-SKQNMF---- 345 (566)
Q Consensus 287 ~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~---- 345 (566)
++.+.+||...|.+.++-..+.++..+..+.........++....+..... .. ..+.+.
T Consensus 177 ~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 256 (498)
T COG3104 177 LLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLL 256 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888666665555433222111111110000000 00 000000
Q ss_pred ---------HHHHHhc-------ccchhHHH---HHHHHHhhcccchhhhHHHHhhc---cC-C-ChhhhhHHHHHHHHH
Q 008417 346 ---------QLWEAVK-------QPNVFLPT---LFVFLWQATPHSDSAMFYFTTNE---LG-F-TPEFLGRVKFVTSVA 401 (566)
Q Consensus 346 ---------~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~g-~-~~~~~g~~~~~~~~~ 401 (566)
-+.+.++ +++++..+ +...++...+....+.+..|.++ .+ + -.-..++..+...+.
T Consensus 257 ~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~ 336 (498)
T COG3104 257 VISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFF 336 (498)
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHH
Confidence 0001111 12222222 11111222111111112222221 12 1 112233445565666
Q ss_pred HHHHHHHHHHHhhcCCcc-------hhhHHHHHHHHHHHhHHHHhhh-ccccccccccchhhhhHHHHHHHhhhhhhHHH
Q 008417 402 SLLGVGLYNGFLKNVPLR-------KIFLANTIFGTALGMTQVFLVT-GLNRKFGISDEWFAIGDSLILTVLSQASFMPV 473 (566)
Q Consensus 402 ~~~~~~~~~~l~~r~g~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 473 (566)
.++.+++..++..|.+++ .-+.++..+++.+.+.+..... ..+..-.++ ..+.....+...++.....|.
T Consensus 337 Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s--~~~lil~y~l~s~gEL~iSpv 414 (498)
T COG3104 337 IILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVS--VWWLVLSYVLQSFGELFISPV 414 (498)
T ss_pred HHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcC--HHHHHHHHHHHHHHHHHhCHH
Confidence 666666655555553222 1244566666666555543311 111000112 233444555566777777777
Q ss_pred H-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHH
Q 008417 474 L-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGA 509 (566)
Q Consensus 474 ~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g 509 (566)
- +++.+..|+...+..+|+.......++.++..+++
T Consensus 415 GLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 415 GLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 7 99999999988888888877666666666666555
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-16 Score=160.99 Aligned_cols=156 Identities=16% Similarity=0.064 Sum_probs=124.0
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhc------ch
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV------ES 225 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~------~~ 225 (566)
.....+.+++++|++..+++++.++......++++.|+++|| +|+|++++++.++..++.+++++ + .+
T Consensus 46 fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr-----~G~R~vllig~ll~~iG~ll~al-a~~~~i~~s 119 (591)
T PTZ00207 46 FNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDY-----LGPRPIFVLSMTVFCLGTLLFAL-TFQEVIEGS 119 (591)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHH-HhcccccCc
Confidence 344556778889999999999877643333346678999999 99999999999999999999988 5 68
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHH-HHHHHhHhhcccChHHHHHHHHHH
Q 008417 226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIV-SSYFSGSMVDAYGVRFVFGVTALL 304 (566)
Q Consensus 226 ~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~gwr~~f~i~~i~ 304 (566)
++.+++.|++.|+|.+...+.....+.+++| ++||.+.++..++..+|.++ +++..+++. .+|++.|++.+++
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp----~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl 193 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP----SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSF 193 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHH
Confidence 9999999999999999888888888999983 46799999999888999875 454554443 4688888888888
Q ss_pred HHH-HHHhheeecccc
Q 008417 305 PLI-TSGVAVLVKEQQ 319 (566)
Q Consensus 305 ~~~-~~~~~~~~~e~~ 319 (566)
.++ .++..+++++++
T Consensus 194 ~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 194 ALVVGILAIVFMRLPP 209 (591)
T ss_pred HHHHHHHHHhheeCCc
Confidence 777 455555555543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-15 Score=140.82 Aligned_cols=355 Identities=12% Similarity=0.032 Sum_probs=221.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
.+.+.++.+.+++....+..+..+.++.+| +....-|..-++++.+.. +...-++.|+ +|-|...+++..+.+
T Consensus 47 Ll~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-----~GLR~a~llgt~ln~ 120 (480)
T KOG2563|consen 47 LLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-----FGLRTALLLGTVLNG 120 (480)
T ss_pred HHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-----cchHHHHHHHHHHHH
Confidence 333444556666666667777888888888 666777777777666655 7788999999 999999999999999
Q ss_pred HHHHHHHhhc-----chHH--HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHh
Q 008417 214 LSWSLMATIV-----ESKY--SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286 (566)
Q Consensus 214 ~~~~~~~~~~-----~~~~--~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 286 (566)
++..+=.... +.++ ....+..+.+...-+......-+..-|+ +..+|..+..+...+..+|..+|.++..
T Consensus 121 iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF---~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 121 IGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF---PPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC---CcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 8877655421 2334 5566777777776666655556677788 5666777777777777899999988888
Q ss_pred Hhhcc------cChHH--HHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchh
Q 008417 287 SMVDA------YGVRF--VFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVF 357 (566)
Q Consensus 287 ~l~~~------~gwr~--~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (566)
.+..+ ..|.. .|+..+.+..+ ..+..+..+++|+.++...+... ......+.+++.++++++.
T Consensus 198 ilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~--------~~~~f~~si~~~~~n~~F~ 269 (480)
T KOG2563|consen 198 ILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL--------QDASFPKSIKSCFKNRQFI 269 (480)
T ss_pred eecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh--------hcCcHHHHHHHHHcCccHH
Confidence 87743 24554 34444444444 22233333343332222111100 1112567778889998866
Q ss_pred HHHHHHHHHhhcccchhhhHHHH---hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHH-HHHHHHHHH
Q 008417 358 LPTLFVFLWQATPHSDSAMFYFT---TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLA-NTIFGTALG 433 (566)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~-~~~~~~~~~ 433 (566)
..++...+ ....++...... ...-|++...+|++.....+++++++.+.|.+.||.++-+.... ......++.
T Consensus 270 il~~~ygi---~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 270 ILAICYGI---GLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred HHHHHHhh---hHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55433222 222222222221 22347777899999999999999999999999999876554433 333333332
Q ss_pred hHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 434 MTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
+.+......+...+.+......+| .+.....|+- -+..|..-|...++..|+.+..+++.+.+-..+-+...
T Consensus 347 ~~l~~~t~~~~~~viv~~t~~~~g-------~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~ 419 (480)
T KOG2563|consen 347 LMLLTCTLFLGDSVIVFTTCGLLG-------FFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILA 419 (480)
T ss_pred HHHHHhhccCCceEehhhhHHHHH-------HhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHh
Confidence 222222222211111111112222 4444555554 55667777788899999999999998888888888888
Q ss_pred HhcC
Q 008417 513 QLFG 516 (566)
Q Consensus 513 ~~~g 516 (566)
+..+
T Consensus 420 ~~~~ 423 (480)
T KOG2563|consen 420 EDLG 423 (480)
T ss_pred hccC
Confidence 7766
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=133.48 Aligned_cols=367 Identities=17% Similarity=0.155 Sum_probs=231.8
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcchhhhccccc--CcCCCCCchHhHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSG 209 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~--~~~G~grr~~~~~~~ 209 (566)
.++..+.++|..+|+. ++.. .+|..++. -|+|..+.+.. ++...++.+..+|.++.|.+ .++| +||.+++-+.
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~f-S~ay~P~sLKllWaPiVDs~y~k~~G-rrksWvvp~q 106 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIF-SFAYWPFSLKLLWAPIVDSVYSKRFG-RRKSWVVPCQ 106 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhh-hhhhhHHHHHHHHHhhhHHHHHHhhc-cccceeeehH
Confidence 4477788999999997 6666 78888875 48999998887 67788999999999999953 4588 8888988888
Q ss_pred HHHHHHHHHHHhh----------cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHH
Q 008417 210 LLGALSWSLMATI----------VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGI 279 (566)
Q Consensus 210 ~~~~~~~~~~~~~----------~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 279 (566)
.+.+..+..++.. .++...+....++..+..+.++.+..++.-.+.++++.+.....+++.. +.|..
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~---~~Gyf 183 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQ---TAGYF 183 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHH---hhhHH
Confidence 8877777766653 2233344456678889999999999999999995544444433333222 44444
Q ss_pred HHHHHHhHhhc-------ccChH---------HHHHHHHHHHHHH-HHhheeeccccccCCCcCCCCCCCCCccccchHH
Q 008417 280 VSSYFSGSMVD-------AYGVR---------FVFGVTALLPLIT-SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQ 342 (566)
Q Consensus 280 ~g~~~~~~l~~-------~~gwr---------~~f~i~~i~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (566)
+|..+--.+.+ ..+|. ...++.+.+.++. .+..++-+|.+.. ..++.+ ....+
T Consensus 184 L~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~-~~~e~~---------~~i~~ 253 (510)
T KOG3574|consen 184 LGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES-VDEELE---------LGIHE 253 (510)
T ss_pred hhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-hhhhhh---------cCHHH
Confidence 44433222211 01121 2233444444443 3333333333222 111111 14556
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh
Q 008417 343 NMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIF 422 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~ 422 (566)
..+-+++.++-|.+.....+....-+++.........-..+.|++....+++..+.....++.....|++... +|++.
T Consensus 254 ~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~--~~pl~ 331 (510)
T KOG3574|consen 254 SYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAG--PRPLN 331 (510)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCC--CCcch
Confidence 6777888899898888888777777777777777777778899999988877755555555555555555432 12111
Q ss_pred ------HHHHHHHHHHHhHHHHhhhcccc-ccccccc--hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHH
Q 008417 423 ------LANTIFGTALGMTQVFLVTGLNR-KFGISDE--WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATL 493 (566)
Q Consensus 423 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 493 (566)
..=.....+..++.+.. ..+.. .-.+... .+++....+.+.+....+...++..+++.++...|+.+.+.
T Consensus 332 ~~lka~~~R~~~~~~~t~Lv~~~-~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlL 410 (510)
T KOG3574|consen 332 VFLKAVPYRLGGGLVQTALVWWT-PTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLL 410 (510)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhh-cccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHH
Confidence 11111111111122211 11111 0011111 22333344555555556666668888999999999999999
Q ss_pred HHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 494 MSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 494 ~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
++..++|+.--..+..++.|.+++..
T Consensus 411 NTLsnLGg~wp~tv~l~l~D~ltv~~ 436 (510)
T KOG3574|consen 411 NTLSNLGGNWPGTVALWLADGLTVKQ 436 (510)
T ss_pred HHHHHhcCCcHHHHHHHhcccCceee
Confidence 99999999999999999999887643
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=140.73 Aligned_cols=365 Identities=15% Similarity=0.111 Sum_probs=210.5
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHh-hcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCC-chHhHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKD-DLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRR-RSYLVLSGL 210 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~-~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~gr-r~~~~~~~~ 210 (566)
++...+..|..++. +......-+|+++ |.+.+.+..|++.+...++-++ .|++|.++.| .++ |+-++.+.+
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-----~~~~k~Pli~s~i 110 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-----TGSVKKPLIVSFL 110 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-----cCCcccCHHHHHH
Confidence 44455566777775 5555566677765 4678899999999999888888 7899999999 453 666777777
Q ss_pred HHHHHHHHHHhh---cc-hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHh
Q 008417 211 LGALSWSLMATI---VE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286 (566)
Q Consensus 211 ~~~~~~~~~~~~---~~-~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 286 (566)
+..++.++.... .+ ..+.++++|++.|+|.+... ..-+++++.. ..+.|.++++....+..+|.++||.+..
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s---~~~dR~rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADAS---TVEDRPRAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhcc---CccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence 777777766322 33 67889999999999987654 6678888877 4555666677676666788888887776
Q ss_pred Hhhcc--cC-----------hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhc
Q 008417 287 SMVDA--YG-----------VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVK 352 (566)
Q Consensus 287 ~l~~~--~g-----------wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (566)
.+... -| +..+-|+++++.++ .+++.++++|.++....++.+.+++ .+.. .+..+
T Consensus 187 ~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~-------~~~~----~~~~~ 255 (488)
T KOG2325|consen 187 AFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE-------EKSD----IEKVK 255 (488)
T ss_pred HHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh-------hccc----hhhhc
Confidence 65421 11 34567788888777 6666778888777543332221100 0000 01111
Q ss_pred ccc----hhHHHHH-HHHHhhcccchhhh-HHHHhhccCCChhh----hhHHHHHHHHHHHHHHHHHHHHh-hcCCcchh
Q 008417 353 QPN----VFLPTLF-VFLWQATPHSDSAM-FYFTTNELGFTPEF----LGRVKFVTSVASLLGVGLYNGFL-KNVPLRKI 421 (566)
Q Consensus 353 ~~~----~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~g~~~~~----~g~~~~~~~~~~~~~~~~~~~l~-~r~g~~~~ 421 (566)
.++ ....+++ .+...+.+...... .......++++..+ .|...++.++..+...+...... .++.+|+.
T Consensus 256 ~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~ 335 (488)
T KOG2325|consen 256 KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI 335 (488)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee
Confidence 111 1111111 11111111111111 11222234544443 33333444443333333333333 34345555
Q ss_pred hHHHHHHHHHHHhHHHHhh--hcc--cccc----c--------------cccchhhhhHHHHHHHhhhhhhHHHHHHHHh
Q 008417 422 FLANTIFGTALGMTQVFLV--TGL--NRKF----G--------------ISDEWFAIGDSLILTVLSQASFMPVLVLAAR 479 (566)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~----~--------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 479 (566)
+..+.++...........+ ... +... + +....+..+..++.+...-....+..++.++
T Consensus 336 ~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk 415 (488)
T KOG2325|consen 336 ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK 415 (488)
T ss_pred eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence 5555333333322221110 000 0000 0 0000112222222222333333445588899
Q ss_pred hCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 480 LCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 480 ~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
...++.+++..|+++.....+..++|.+...+....|+.+
T Consensus 416 iLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~ 455 (488)
T KOG2325|consen 416 ILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRP 455 (488)
T ss_pred HhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccH
Confidence 9999999999999999999999999999999999999876
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-14 Score=139.19 Aligned_cols=311 Identities=15% Similarity=0.101 Sum_probs=211.1
Q ss_pred hhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH--hHhhhhhhhhhhhhc
Q 008417 179 LPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVA--FSDVVVDSMVVERAR 256 (566)
Q Consensus 179 ~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~--~~~~~~~~~i~~~~~ 256 (566)
.+....+++|.++|| ||||..+........+..+.+.+ .. +|. ++ +.++.++ .......++++|..
T Consensus 74 ~~~i~s~~iG~lSD~-----~grk~~L~~~~~~~~l~~~~~~~-~~-~~~-~~---~~~l~g~~~~~~s~~~a~vadis- 141 (463)
T KOG2816|consen 74 LTLISSPLIGALSDR-----YGRKVVLLLPLFGTILPALCLLF-QG-YWF-FL---LLGLSGGFSAIFSVGFAYVADIS- 141 (463)
T ss_pred HHHHHHhhhHHhhhh-----hhhhhhHHHHHHHHHHhHHHHHH-HH-HHH-hh---hcccccchhhhhhhhhhheeecc-
Confidence 333447899999999 99999999999999888887776 33 333 33 3333333 23446677899999
Q ss_pred ccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-HHHhheeeccccccCCCcC-CC-CCCCC
Q 008417 257 GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRR-QN-LPLGD 333 (566)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~-~~-~~~~~ 333 (566)
..+.|...+++..+....+..++|.+++.+.+..|.-.+|++..+..++ .+...+++||+..+++... .. ....+
T Consensus 142 --~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~ 219 (463)
T KOG2816|consen 142 --SEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPG 219 (463)
T ss_pred --chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCC
Confidence 5557888888888888899999999999999999999999999988888 5667788899876544331 00 00111
Q ss_pred CccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcc-cchh-hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHH-
Q 008417 334 PSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATP-HSDS-AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYN- 410 (566)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~- 410 (566)
....+...+..+...+.-.+|..+..+...++..... .... ..+++....+++++.+.+...+.......++..+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~ 299 (463)
T KOG2816|consen 220 SLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLP 299 (463)
T ss_pred cccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222233333333223344444443333322211 1111 222333345799999999888777777777776655
Q ss_pred HHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHH
Q 008417 411 GFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATL 489 (566)
Q Consensus 411 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 489 (566)
.+...++.++.+..|.....+..+.+.+....|..+.. .... .......|.. +..+...+++.+|++
T Consensus 300 ~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~-----~v~~-------~~~~~~~pa~~s~~s~~v~~~e~g~v 367 (463)
T KOG2816|consen 300 LLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAA-----GVVV-------ALAGIVFPAIRAFASILVSPEEQGKV 367 (463)
T ss_pred HHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHH-----HHHH-------HhhcchhHHHHhHHHhhcccccccch
Confidence 77788888888888888888877777766665543111 1111 3334445555 888999999999999
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHhc
Q 008417 490 FATLMSISNGGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 490 ~g~~~~~~~lg~~i~~~~~g~l~~~~ 515 (566)
+++...+..+...++|.+.+.++..+
T Consensus 368 ~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 368 FGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999887764
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=125.64 Aligned_cols=378 Identities=18% Similarity=0.178 Sum_probs=238.0
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHh-hcCCCHHHHHHHHHHhhhhhhhcchhhhccccc--CcCCCCCchHhHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKD-DLHLDPAETAVISGFSSLPWLIKPLYGFISDSL--PLFGYRRRSYLVLSGL 210 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~-~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~--~~~G~grr~~~~~~~~ 210 (566)
+..+.++|+.+|+. ++....+|..+++ .-++|..+.|.. ++...+|.+..+|.++.|-+ +++| +||.+++-...
T Consensus 2 ~~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~f-Sla~~PfSlKlLWaPiVDs~y~~~~G-RRKSWiiP~Q~ 79 (544)
T PF13000_consen 2 IALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIF-SLASYPFSLKLLWAPIVDSVYSKRIG-RRKSWIIPIQY 79 (544)
T ss_pred eeHHHHHHHHcCcccccccccchhhhccccCCCChhHheee-eeeechhHHHHhhhhhhhhhcccccC-CcchhhhHHHH
Confidence 34577899999997 7777788888866 137899999987 77788999999999999985 7899 99999998888
Q ss_pred HHHHHHHHHHhhcc---------h--------------HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchh
Q 008417 211 LGALSWSLMATIVE---------S--------------KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQ 267 (566)
Q Consensus 211 ~~~~~~~~~~~~~~---------~--------------~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 267 (566)
+.++.++.++.... + ...+....++.-+-.+.++.++.++.-.+.++++.+.....+
T Consensus 80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq 159 (544)
T PF13000_consen 80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ 159 (544)
T ss_pred HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH
Confidence 88887777664220 0 112344445666778889999999999999555554444443
Q ss_pred HHHHHHhHHHHHHHHHHHhHhhc-----c--------cC---hHHHHHHHHHHHHH-HHHhheeeccccccCCCcC----
Q 008417 268 SLCWGSSAFGGIVSSYFSGSMVD-----A--------YG---VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRR---- 326 (566)
Q Consensus 268 ~~~~~~~~~g~~~g~~~~~~l~~-----~--------~g---wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~---- 326 (566)
++.. ++|..++..+--.+-+ . .| -..-..+.+.+.++ ...+.++-+|++..+...+
T Consensus 160 tvG~---~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~ 236 (544)
T PF13000_consen 160 TVGQ---TAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPI 236 (544)
T ss_pred HhHh---hhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccc
Confidence 3332 5555554443332221 0 01 11122233444444 4455566666543211000
Q ss_pred ----CCCC----CCCCc------cccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhh
Q 008417 327 ----QNLP----LGDPS------FFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLG 392 (566)
Q Consensus 327 ----~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 392 (566)
++.+ +.+++ .....++..+.+++.+|-|.+..+++..+..-+++........+-+-+.|++.+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LA 316 (544)
T PF13000_consen 237 NKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLA 316 (544)
T ss_pred ccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhH
Confidence 0000 00000 112345667788999999999988888888888887777777777778999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcc---------------------------hhhHHHHHHHHHHHhHHHHh--hhcc
Q 008417 393 RVKFVTSVASLLGVGLYNGFLKNVPLR---------------------------KIFLANTIFGTALGMTQVFL--VTGL 443 (566)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~r~g~~---------------------------~~~~~~~~~~~~~~~~~~~~--~~~~ 443 (566)
++..+..-..++.....+++..--.+. +..+.+...-.+..++.... ..+.
T Consensus 317 l~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~ 396 (544)
T PF13000_consen 317 LLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPS 396 (544)
T ss_pred HHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCC
Confidence 887666666666666666665422210 11111111111111111110 0010
Q ss_pred ccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 444 NRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 444 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
+.........+++...++.++.....+..+.++-+++.+|..-|+.+.+.|++.++|+.--..+.-++.|.+..
T Consensus 397 ~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~ 470 (544)
T PF13000_consen 397 DGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTV 470 (544)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccc
Confidence 11111111123455566666677777777778899999999999999999999999999988888889888754
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-11 Score=114.36 Aligned_cols=242 Identities=16% Similarity=0.089 Sum_probs=154.4
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
.+.+...+ +++|++..+++.+.........+ +++.|.++|| +|||+..++-+++..++++..- .++++.++
T Consensus 54 GpY~Y~LY-~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-----~Grk~~cl~~cily~~scl~k~--~~~~~~L~ 125 (354)
T PF05631_consen 54 GPYLYALY-ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-----YGRKKACLLFCILYSLSCLTKH--SSNYPVLL 125 (354)
T ss_pred cchhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHHHHHh--ccccHHHH
Confidence 44444444 45899999999987766555544 8999999999 9999999999999999987655 78999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhh-hhhhccc-CcccccchhHHHH-HHhHHHHHHHHHHHhHhhcccC--hHHHHHHHHHHH
Q 008417 231 LSILLGSLSVAFSDVVVDSMV-VERARGE-SQSVSGSLQSLCW-GSSAFGGIVSSYFSGSMVDAYG--VRFVFGVTALLP 305 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i-~~~~~~~-~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g--wr~~f~i~~i~~ 305 (566)
++|++.|++.+....+..+++ .|.-++. +++..+..++... ..+.+-.+++.+++.++.+..+ -..+|....++.
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l 205 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL 205 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 999999999999988888854 4543221 1112222333222 1223334555556666666554 478898888777
Q ss_pred HH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHH-HHHHhcccchhHHHHHHHHHhhcccc-hhhhHHHHhh
Q 008417 306 LI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATPHS-DSAMFYFTTN 382 (566)
Q Consensus 306 ~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 382 (566)
++ .+++....+|.+.+..+.. +..+..++ ...+.++|+++.+.+...++-...+. ...+.+. .+
T Consensus 206 ~~~~~~I~~~W~ENyg~~~~~~------------~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPa-L~ 272 (354)
T PF05631_consen 206 AVAAVLILKTWPENYGDTSSSS------------SLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPA-LD 272 (354)
T ss_pred HHHHHHHHhcccccCCCccccc------------chHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeece-ec
Confidence 77 4444445566544321111 22233333 33456678888777666655443222 1112221 12
Q ss_pred ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008417 383 ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN 415 (566)
Q Consensus 383 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r 415 (566)
..+ ...-.|++++.+.++.++|+.+..++..+
T Consensus 273 ~~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 273 PDD-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred CCC-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111 23458999999999999999999766654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=125.76 Aligned_cols=168 Identities=14% Similarity=0.204 Sum_probs=137.0
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchh
Q 008417 342 QNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKI 421 (566)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~ 421 (566)
..+.+.++++.++.+..+++...+.++......+++++.+++++-.+...|.+.+....+.++.-++..++.+|+|+.++
T Consensus 359 ~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v 438 (618)
T KOG3762|consen 359 SVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV 438 (618)
T ss_pred HHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce
Confidence 44556667888888777777777777777777888899999999888888988888999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHH-Hhhh
Q 008417 422 FLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSI-SNGG 500 (566)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~lg 500 (566)
+.++..+..+-++.+....+.| ..+-.-++.++.....|..+.+|++...|++.++++.|+.... ..+|
T Consensus 439 ~~lgLa~~~~Rf~~~S~L~n~W----------~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG 508 (618)
T KOG3762|consen 439 MYLGLACNVGRFLYYSYLQNPW----------MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLG 508 (618)
T ss_pred eeehhhHHHHHHHHHHHhcCch----------heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccC
Confidence 9999888888877776666654 2333444555566777777779999999999999999998765 5788
Q ss_pred hhhHhHHHHHHHHhcCCCC
Q 008417 501 SVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 501 ~~i~~~~~g~l~~~~g~~~ 519 (566)
-.+|.+++|.+.+.+|...
T Consensus 509 ~g~GslIGG~~v~~fg~~t 527 (618)
T KOG3762|consen 509 KGLGSLIGGFVVERFGART 527 (618)
T ss_pred cchhhhhhhhhheeehhHH
Confidence 8999999999999988665
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-15 Score=149.76 Aligned_cols=370 Identities=13% Similarity=0.085 Sum_probs=2.9
Q ss_pred HHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHH
Q 008417 137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL 214 (566)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~ 214 (566)
.+++..+.+.+. ++....+. -+++.|+++..+.|++.+.+-++.++ ..+..++.+| ..|-+++-.+.++.++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lt-tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-----~hrprwig~g~~~~~~ 80 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLT-TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-----GHRPRWIGIGALLMGL 80 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCcceeeecHHHHHH
Confidence 344555556444 44455544 55667999999999999999888877 5677999999 7888999999999999
Q ss_pred HHHHHHhh---cc----------------------------------------------hHHHHHHHHHHHHHHHHhHhh
Q 008417 215 SWSLMATI---VE----------------------------------------------SKYSAALSILLGSLSVAFSDV 245 (566)
Q Consensus 215 ~~~~~~~~---~~----------------------------------------------~~~~l~~~r~l~g~~~~~~~~ 245 (566)
+.+++++- .+ -++.++++.++.|+|.+...+
T Consensus 81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t 160 (539)
T PF03137_consen 81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT 160 (539)
T ss_dssp -----------------------------------------------------------------------SSS------
T ss_pred HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence 98887652 00 024567889999999999999
Q ss_pred hhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc---------------------cC-hHHHHHHHHH
Q 008417 246 VVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA---------------------YG-VRFVFGVTAL 303 (566)
Q Consensus 246 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------------------~g-wr~~f~i~~i 303 (566)
...+|+=|.+ ++++.....|+.++...+|+++|.++++.+.+. .| |...|++.++
T Consensus 161 LG~tYiDDnv---~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~ 237 (539)
T PF03137_consen 161 LGITYIDDNV---SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGI 237 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeecccc---ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999 566677788888888899999999999877532 12 6666777777
Q ss_pred HHHHHHHhheeeccccccCC----CcC---CCC-CCCCC---------ccccchHHHHHHHHHHhcccchhHHHHHHHHH
Q 008417 304 LPLITSGVAVLVKEQQVLGP----SRR---QNL-PLGDP---------SFFESSKQNMFQLWEAVKQPNVFLPTLFVFLW 366 (566)
Q Consensus 304 ~~~~~~~~~~~~~e~~~~~~----~~~---~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (566)
+.++..+..++.|+.-+... .++ ++. +...+ ...+..+...+.++++++||.+....+.....
T Consensus 238 ~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~ 317 (539)
T PF03137_consen 238 LLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFE 317 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence 77765555555554332220 000 000 00000 01123344556677888898877776665555
Q ss_pred hhcccchhhhHHHHh-hccCCChhhhhHHHHH-HHHHHHHHHHHHHHHhhcCCc--chhhHHHHHHHHHHHhH---HHHh
Q 008417 367 QATPHSDSAMFYFTT-NELGFTPEFLGRVKFV-TSVASLLGVGLYNGFLKNVPL--RKIFLANTIFGTALGMT---QVFL 439 (566)
Q Consensus 367 ~~~~~~~~~~~~~~~-~~~g~~~~~~g~~~~~-~~~~~~~~~~~~~~l~~r~g~--~~~~~~~~~~~~~~~~~---~~~~ 439 (566)
.+.......+.+-|. .+++.++..++++..+ ...+..+|.+++|++.+|++. |+.+....+...+..+. .++.
T Consensus 318 ~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~ 397 (539)
T PF03137_consen 318 SFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFL 397 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 554444455554444 4579999998888744 445778899999999999853 33333333332222222 1111
Q ss_pred hhc------ccc-c----------------------------ccc---c---cchhhhhHHHHHHHhhhhhhHHHHHHHH
Q 008417 440 VTG------LNR-K----------------------------FGI---S---DEWFAIGDSLILTVLSQASFMPVLVLAA 478 (566)
Q Consensus 440 ~~~------~~~-~----------------------------~~~---~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 478 (566)
.-. .+. + .+. . .....+...++..++......|......
T Consensus 398 ~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~L 477 (539)
T PF03137_consen 398 GCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITL 477 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeee
Confidence 000 000 0 000 0 0011222233334455566667667777
Q ss_pred hhCCCCchHHHHHHHHHHHh-hhhhhHhHHHHHHHHhc
Q 008417 479 RLCPEGMEATLFATLMSISN-GGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 479 ~~~~~~~~g~~~g~~~~~~~-lg~~i~~~~~g~l~~~~ 515 (566)
+.+++++|+.+.|+...+.. +|..-||.+.|.+.|..
T Consensus 478 R~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 478 RCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------
T ss_pred ccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 88999999999999887655 55567999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-12 Score=119.31 Aligned_cols=133 Identities=22% Similarity=0.264 Sum_probs=100.4
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHh-hhhhhhcchhhhccccc-CcCCCCCchHhHHHHHHHHHHHHHHHhhcchHH
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSL-PLFGYRRRSYLVLSGLLGALSWSLMATIVESKY 227 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~-~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (566)
.-...++||+++ +|++....+.+.... ..|..++|+.|..+||+ +||| +|||.+..+.++..++.+++.+ +.++.
T Consensus 50 ~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~~i~~~l~Lig~-aaDig 126 (498)
T KOG0637|consen 50 LELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSLLIAVSLFLIGY-AADIG 126 (498)
T ss_pred HHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhHHHHHHHhhhhh-Hhhhh
Confidence 335667888866 799998888775555 77788899999999998 7999 9999999999999999888877 44332
Q ss_pred -----------------HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccc-cchhHHHHHHhHHHHHHHHHHHhHh
Q 008417 228 -----------------SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVS-GSLQSLCWGSSAFGGIVSSYFSGSM 288 (566)
Q Consensus 228 -----------------~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~l 288 (566)
..++...+.-+..-.....+-+++.|+..++++++| +..++.+. .+|..+|..+++++
T Consensus 127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~---avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFM---AVGNVLGYALGSYL 202 (498)
T ss_pred HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHH---Hhcceeeeeccccc
Confidence 233444445556666677888899999987777774 44444444 78888888888743
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=124.63 Aligned_cols=275 Identities=13% Similarity=0.101 Sum_probs=199.6
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
...+++.++.+++. +..... ...+.+.|+++..+.|++.+.+-++..+ ..+..+..-| ..|-+++-++.+++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~-IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-----~HrPr~Ig~G~~~m 172 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSV-ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-----GHRPRWIGIGLVLM 172 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhh-hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-----cCccceeeechhHH
Confidence 44455666777776 333433 3456677999999999999999888877 4566999999 78889999999999
Q ss_pred HHHHHHHHhh------------c-------c--------------------------------hHHHHHHHHHHHHHHHH
Q 008417 213 ALSWSLMATI------------V-------E--------------------------------SKYSAALSILLGSLSVA 241 (566)
Q Consensus 213 ~~~~~~~~~~------------~-------~--------------------------------~~~~l~~~r~l~g~~~~ 241 (566)
+++.+++++. . + -+..++++.++.|+|..
T Consensus 173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 9998888763 0 0 01256788899999999
Q ss_pred hHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc-------------------ChHHHHHHHH
Q 008417 242 FSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-------------------GVRFVFGVTA 302 (566)
Q Consensus 242 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------------------gwr~~f~i~~ 302 (566)
...+...+|+=|.. .+++-...+++.+....+|+++|-++++++...+ .|...|++.+
T Consensus 253 pi~tlGisYiDDnv---k~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g 329 (735)
T KOG3626|consen 253 PIFTLGISYIDDNV---KKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICG 329 (735)
T ss_pred CCccCCCccccccc---cccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHH
Confidence 99999999999999 5667778889999888999999999999886321 1777788888
Q ss_pred HHHHHHHHhheeeccccccCCC----cCC----CC---CCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhccc
Q 008417 303 LLPLITSGVAVLVKEQQVLGPS----RRQ----NL---PLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH 371 (566)
Q Consensus 303 i~~~~~~~~~~~~~e~~~~~~~----~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (566)
.+.++..+.++++|...+...+ ++. .+ +..+.+..+..++..+.++++++||.+...++...+....+.
T Consensus 330 ~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~ 409 (735)
T KOG3626|consen 330 ALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAIT 409 (735)
T ss_pred HHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 8888866666666655443211 000 00 011222333455667778899999988877777666666555
Q ss_pred chhhhHHHHh-hccCCChhhhhHHHH-HHHHHHHHHHHHHHHHhhcCCc
Q 008417 372 SDSAMFYFTT-NELGFTPEFLGRVKF-VTSVASLLGVGLYNGFLKNVPL 418 (566)
Q Consensus 372 ~~~~~~~~~~-~~~g~~~~~~g~~~~-~~~~~~~~~~~~~~~l~~r~g~ 418 (566)
....+.+-|+ +++|.++..+..+.. +...+..+|.+++|++.+|+..
T Consensus 410 G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 410 GYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred hHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 5556655555 458999999998884 4555677888999999998853
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=122.36 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=122.7
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA 229 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (566)
....++.|+++++|.+..+.+++.+...+..++ .++.|+++|| ++||+.+..+.+...+....+.. .++.+.+
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 308 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-----LGKRFLMRVAAVAGVCFYAGMLM-AHSPAIL 308 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHH-HhhHHHH
Confidence 344577788888999999999887766555454 6788999999 89998888776666655555554 6777777
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHH
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITS 309 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~ 309 (566)
++.+++.+++.+........+..|..| ++++...++.+....+|..+|+.++|.+.+.+||+..|++.+++.++.+
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p----~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~ 384 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMP----GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 888888888877766666677788773 3467788887777789999999999999999999999999888888876
Q ss_pred Hhheeecc
Q 008417 310 GVAVLVKE 317 (566)
Q Consensus 310 ~~~~~~~e 317 (566)
+..+++||
T Consensus 385 ~~~~~~~~ 392 (393)
T PRK15011 385 FCLLRIKD 392 (393)
T ss_pred HHHHhhcC
Confidence 66666664
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.1e-10 Score=107.53 Aligned_cols=350 Identities=11% Similarity=0.040 Sum_probs=208.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhh-cCCCHHHHHH-HHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDD-LHLDPAETAV-ISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL 211 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~g~s~~~~g~-~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~ 211 (566)
...+|..+|...+- -.-+.+.+|+.+. .|++.+|+.- +.-+..-.++. -.+...+.|. .|.|++++++.+.
T Consensus 7 ~~llc~~gf~~~fr-PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-----l~Ykpviil~~~~ 80 (412)
T PF01770_consen 7 TLLLCLFGFFKEFR-PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-----LRYKPVIILQALS 80 (412)
T ss_pred HHHHHHHHHHHhcC-CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHH
Confidence 34445555554442 1234556677765 7999888764 32233334444 3466999999 9999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc-
Q 008417 212 GALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD- 290 (566)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~- 290 (566)
..+...++.+ .++...+-+..++.|++.+. .++..+++-... ++++.-++.+...+...+|..++.++|..+..
T Consensus 81 ~i~t~~lll~-~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v---~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 81 YIITWLLLLF-GTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVV---DKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred HHHHHHHHHH-HCcHHHHHHHHHHHHHHHHH-HHHHHHHheeec---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888 99999999999999999887 456677777777 55555566677777778888888888888775
Q ss_pred -ccChHHHHHHHHHHHHHHHHhheeeccccccC---CCc----------CCCCC----CC----CCc------cccchHH
Q 008417 291 -AYGVRFVFGVTALLPLITSGVAVLVKEQQVLG---PSR----------RQNLP----LG----DPS------FFESSKQ 342 (566)
Q Consensus 291 -~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~---~~~----------~~~~~----~~----~~~------~~~~~~~ 342 (566)
...++...++......++++..+++|.+++.. +.. .+..+ .. +.. .....+.
T Consensus 156 ~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (412)
T PF01770_consen 156 GGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRL 235 (412)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHH
Confidence 44567777776665566666666777654321 000 00000 00 000 0111223
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhcc---CCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 008417 343 NMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNEL---GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR 419 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~ 419 (566)
..+++++..++|.++...+...+...++.....+....-++. +-....-|.+-++..+.+.++.+..|++..++.+.
T Consensus 236 l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~ 315 (412)
T PF01770_consen 236 LWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW 315 (412)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH
Confidence 445666677888887777654444333333333322222233 33445667777888888888889999986665554
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhh
Q 008417 420 KIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNG 499 (566)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l 499 (566)
.-+.++......+.+++.. ....+. +......+++.............-++.....+.-|.++|+++++..+
T Consensus 316 ~~l~l~~~S~l~a~~L~lm-~~t~~I-------wv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~ 387 (412)
T PF01770_consen 316 GELALGVFSLLQAGLLFLM-SFTGNI-------WVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALV 387 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHH
Confidence 4444433333322222222 211111 23333333333333333332235566666677778888877766655
Q ss_pred hhhh
Q 008417 500 GSVL 503 (566)
Q Consensus 500 g~~i 503 (566)
-+.+
T Consensus 388 LQti 391 (412)
T PF01770_consen 388 LQTI 391 (412)
T ss_pred HHHh
Confidence 5444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-09 Score=105.52 Aligned_cols=365 Identities=15% Similarity=0.088 Sum_probs=200.6
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHh-hhhhhhcchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
.+.+...+|..... .+....++.++.+-+.-+---.+...-.- ....+++|..|.+.|| ..|.+.+..+.+.-
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-----~~Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-----SPRLKVIRTSLVVQ 78 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-----CcchhhHHHHHHHH
Confidence 34456666776665 56667777777665443333333322112 3344558999999999 88888877765443
Q ss_pred HHHH----HHHHhh--c-c----hHHHHHHHHH---HHHHHHHhHh-hhhhh----hhhhhhcccCcccccchhHHHHHH
Q 008417 213 ALSW----SLMATI--V-E----SKYSAALSIL---LGSLSVAFSD-VVVDS----MVVERARGESQSVSGSLQSLCWGS 273 (566)
Q Consensus 213 ~~~~----~~~~~~--~-~----~~~~l~~~r~---l~g~~~~~~~-~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~ 273 (566)
-++. .++... . . +.+....+.. +.|...-... ....+ ++..+. ++++......++...-.
T Consensus 79 n~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~-~~~~~~La~~NA~mRRI 157 (432)
T PF06963_consen 79 NLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIA-GGDPGALARMNATMRRI 157 (432)
T ss_pred HHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhc-CCChhhHHHHHHHHHHH
Confidence 2222 111110 1 1 1122222222 2221111111 11112 233333 34555666777777766
Q ss_pred hHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHh-heee-------ccccccCCCcCCCCCCCC---------Ccc
Q 008417 274 SAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGV-AVLV-------KEQQVLGPSRRQNLPLGD---------PSF 336 (566)
Q Consensus 274 ~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~-~~~~-------~e~~~~~~~~~~~~~~~~---------~~~ 336 (566)
-.+.-+++|++.|.+....+.+....+.++..++.++. .+++ |+-..++..++++.+... ...
T Consensus 158 DL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (432)
T PF06963_consen 158 DLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhH
Confidence 67889999999999999899998888888777774332 2222 211111111111100000 001
Q ss_pred ccchHHHH----HHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 008417 337 FESSKQNM----FQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGF 412 (566)
Q Consensus 337 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 412 (566)
.+..++.+ +.+...++++.++..+.+.++|...... .....-|....|+++...|.+-....+.++.+.++.+++
T Consensus 238 ~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf-~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l 316 (432)
T PF06963_consen 238 LKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSF-GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWL 316 (432)
T ss_pred HHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122 2233456666666555556665543333 444444556669999999999999999999999999999
Q ss_pred hhcCCcchhhHHHHHHHHHHHhHHHHhhhccccc-cccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHH
Q 008417 413 LKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRK-FGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFA 491 (566)
Q Consensus 413 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 491 (566)
.+|+|..|.-.++.........+........... ..+.. ..+++..++.=+.--..-....-+++|.+|+++||+..|
T Consensus 317 ~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~-~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~g 395 (432)
T PF06963_consen 317 MKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA-YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSG 395 (432)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH-HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHH
Confidence 9999998887777766654433332211111100 00111 112221221111112222333377888999999999999
Q ss_pred HHHHHHhhhhhhHhHH
Q 008417 492 TLMSISNGGSVLGGLL 507 (566)
Q Consensus 492 ~~~~~~~lg~~i~~~~ 507 (566)
+.++..++...+.-.+
T Consensus 396 vq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 396 VQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887765443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-11 Score=118.74 Aligned_cols=156 Identities=13% Similarity=0.220 Sum_probs=123.6
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
...++.++.+++|.+..+.+++.+........ .++.|+++|| +|||+.+.++.++..+..+.+.. .++.+.++
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 292 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-----FGKRRLMLLAALAGVAFYTGLAA-DNSLWALL 292 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hcchhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44567788788899999999887665444333 6778999999 89999988887776666555555 67778788
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG 310 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~ 310 (566)
+.+++.|++.+...+....++.|..| + +++...++.+....+|..++|.++|.+.+..||+..|++.+++.++..+
T Consensus 293 ~~~~~~g~~~g~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 293 MLQLLNAIFIGILAGIGMLYFQDLMP---G-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc---c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 88899999988877777788888873 2 3457888888888899999999999999999999999999988888666
Q ss_pred hheeecc
Q 008417 311 VAVLVKE 317 (566)
Q Consensus 311 ~~~~~~e 317 (566)
..++++|
T Consensus 369 ~~~~~~~ 375 (375)
T TIGR00899 369 CLLLIKD 375 (375)
T ss_pred HHheecC
Confidence 6666654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-12 Score=106.91 Aligned_cols=130 Identities=23% Similarity=0.307 Sum_probs=109.9
Q ss_pred hhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcc
Q 008417 179 LPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARG 257 (566)
Q Consensus 179 ~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~ 257 (566)
++..+ +++.|++.|| +|||+.+..+..+..++.+.+.. .++.+.+.+.+++.|++.+...+....++.|..
T Consensus 9 ~~~~~~~~~~g~~~d~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 80 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDR-----FGRKPVLLVGLFIFVLSTAMFAL-SSNITVLIIARFLQGFGAAFALVAGAALIADIY-- 80 (141)
T ss_pred hHHHHHHhhHHHHHhh-----cchhHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC--
Confidence 34344 7788999999 99999999999998888888887 888999999999999999999889999999999
Q ss_pred cCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHH-Hhheeecc
Q 008417 258 ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITS-GVAVLVKE 317 (566)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~-~~~~~~~e 317 (566)
++++|+...+.......+|..+++.+++.+.+..+|++.|++.+++.++.. ...++.||
T Consensus 81 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 81 -PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred -ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 556778888888888899999999999999998999999999888777743 44444443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=124.86 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Q 008417 164 HLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAF 242 (566)
Q Consensus 164 g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~ 242 (566)
+.+..+.|.+.++..+..++ .+++|+++|| +|||+.+..+.++..++.+++++ .++.+.+++.+++.|++.+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~l~g~~~~~ 331 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINR-----IGAKNALLLAGTIMAVRIIGSGF-ATGPLEVSILKLLHAFEVPF 331 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcchhhHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 56777888888888776666 6788999999 99999999999988888888887 88888889999999999888
Q ss_pred HhhhhhhhhhhhhcccCcccccchhHH-HHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-HHHhheeeccccc
Q 008417 243 SDVVVDSMVVERARGESQSVSGSLQSL-CWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-TSGVAVLVKEQQV 320 (566)
Q Consensus 243 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~ 320 (566)
.......++.+..+ ++.++..++. .+....+|.++++.++|++.+.+||+..|.+.+++.++ .++..+.++++++
T Consensus 332 ~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 408 (420)
T PRK09528 332 LLVGVFKYITLNFD---VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDRE 408 (420)
T ss_pred HHHHHHHHHHHHcC---ccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 77777788888884 4445555443 34455799999999999999999999999998888776 4444444554433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=122.37 Aligned_cols=161 Identities=16% Similarity=0.158 Sum_probs=124.2
Q ss_pred hhhhHHHHHHhhcCCC--------HHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHh
Q 008417 151 ARLAVNFYLKDDLHLD--------PAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMAT 221 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s--------~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~ 221 (566)
.....+.++++ .|.+ ....+...++..+..++ .++.|+++|| +|||+++.++.++..++...+..
T Consensus 227 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-----~g~r~~l~~~~~~~~v~~~l~~~ 300 (418)
T TIGR00889 227 TNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-----FGIKKVMLLSLVAWALRFGFFAY 300 (418)
T ss_pred HHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHH
Confidence 34445666654 4544 35667777777666655 6778999999 99999999999988887766654
Q ss_pred hcc---hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHH-HHhHHHHHHHHHHHhHhhcc------
Q 008417 222 IVE---SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCW-GSSAFGGIVSSYFSGSMVDA------ 291 (566)
Q Consensus 222 ~~~---~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~l~~~------ 291 (566)
... +.+.+++.+++.|++.+...+....++.|.+ ++++|+..+++.+ ....+|.++||.++|.+.++
T Consensus 301 ~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~---p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~ 377 (418)
T TIGR00889 301 GDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV---PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT 377 (418)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC
Confidence 122 2356677899999999888888888999999 6778888999886 56689999999999999887
Q ss_pred cChHHHHHHHHHHHHH-HHHhheeeccccc
Q 008417 292 YGVRFVFGVTALLPLI-TSGVAVLVKEQQV 320 (566)
Q Consensus 292 ~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~ 320 (566)
+||+..|.+.+++.++ .++..++++|+..
T Consensus 378 ~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 378 FDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4699999998888777 5666677777644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-11 Score=120.93 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=119.7
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHH-HHh-hcchH
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSL-MAT-IVESK 226 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~-~~~-~~~~~ 226 (566)
.....+|.++++++|.+..+.++......++..+ .++.|+++|| +|||+.++.+.++..++.+. +.. .+++.
T Consensus 268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (490)
T PRK10642 268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-----FGRRPFVILGSVALFVLAIPAFILINSNVI 342 (490)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3455678888777899888877776666676666 6778999999 99999888877654433222 211 14556
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc-ChHHHHHHHHHHH
Q 008417 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLP 305 (566)
Q Consensus 227 ~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gwr~~f~i~~i~~ 305 (566)
..+++++++.|++.+........++.+++ +.+.|+...++.+....++..++|.+.+++.+.. +|+.++++..+..
T Consensus 343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~---p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~ 419 (490)
T PRK10642 343 GLIFAGLLMLAVILNCFTGVMASTLPAMF---PTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA 419 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 77788888888877766666777888998 6677888888755445566778888888887654 4787777777666
Q ss_pred HHHHHhheeeccccccCC
Q 008417 306 LITSGVAVLVKEQQVLGP 323 (566)
Q Consensus 306 ~~~~~~~~~~~e~~~~~~ 323 (566)
++.++..+++||++++..
T Consensus 420 ~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 420 VIGLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHHhccccCCCC
Confidence 666666667799887643
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=117.29 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=131.3
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA 229 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (566)
....++.++++.+|.+..+.|++.+...++..+ .++.|++.|| .++++.+..+.++.+++.+.+.+ .++.+..
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-----~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 315 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-----ARPGLLMLLSTLGSFLAVGLFGL-MPMWILA 315 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-----cCcchHHHHHHHHHHHHHHHHHc-cchHHHH
Confidence 344567788776899999999998888887777 5677999999 77888888888888888777776 7888778
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-H
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-T 308 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~ 308 (566)
+++.++.|++.+...+...+++.|.. +++.|++.+++......+|..+|+.+.|.+.+.+|++..+++.+++.++ .
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 392 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQT---PDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIG 392 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 88889999988887777778888888 6667888999888888999999999999999999999999888776666 5
Q ss_pred HHhheeeccccc
Q 008417 309 SGVAVLVKEQQV 320 (566)
Q Consensus 309 ~~~~~~~~e~~~ 320 (566)
++..+.+++.+.
T Consensus 393 ~~~~~~~~~~~~ 404 (417)
T PRK10489 393 VLLLLVLGELRR 404 (417)
T ss_pred HHHHHhcccccc
Confidence 556666666554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=115.42 Aligned_cols=158 Identities=25% Similarity=0.307 Sum_probs=137.0
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCch-HhHHHHHHHHHHHHHHHhhcchH
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRS-YLVLSGLLGALSWSLMATIVESK 226 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~-~~~~~~~~~~~~~~~~~~~~~~~ 226 (566)
.......+.++.+.+|.+..+.+...+...++..+ .+++|+++|| +|||+ .+..+.++..++.+.+.. .++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 265 (352)
T cd06174 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-----LGRRRLLLLIGLLLAALGLLLLAL-APSL 265 (352)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHH-hccH
Confidence 34455667777776799999999998888887777 6788999999 89999 999999999999988887 7888
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHH
Q 008417 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL 306 (566)
Q Consensus 227 ~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~ 306 (566)
+.+++..++.|++.+...+....++.|.. ++++|+..+++......+|..+++.+.+.+.+..+|++.|++.+++.+
T Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~ 342 (352)
T cd06174 266 ALLLVALLLLGFGLGFAFPALLTLASELA---PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342 (352)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 88999999999999999999999999999 557788899999988899999999999999999999999999999888
Q ss_pred HHHHhheee
Q 008417 307 ITSGVAVLV 315 (566)
Q Consensus 307 ~~~~~~~~~ 315 (566)
+..+..+++
T Consensus 343 i~~i~~~~~ 351 (352)
T cd06174 343 LAALLLLLL 351 (352)
T ss_pred HHHHHheec
Confidence 866555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-11 Score=120.37 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=121.4
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
+.++.+++.+++.... ......+|.|+++++|++..+.++..+...++..+ .+++|+++|| ++||+.++....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-----~g~r~~~~~~~~ 332 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-----ANGRRALVACIA 332 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCchHHHHHH
Confidence 3455555555544433 23455678899888999999999988888777777 6788999999 888877665544
Q ss_pred HHHHHHHH--HHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHH-HHHHHHHHHhH
Q 008417 211 LGALSWSL--MATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYFSGS 287 (566)
Q Consensus 211 ~~~~~~~~--~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~ 287 (566)
+..++... ... .++.+.+.+.+++.|++.............|.. +++.++.+.++.+...++ |..++|.+.|.
T Consensus 333 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~---p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~ 408 (467)
T PRK09556 333 LALIIFTLGVYQH-ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFV---PKKAIGVANGIKGTFAYLFGDSFAKVGLGM 408 (467)
T ss_pred HHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 43333222 222 456666667777777654333333345667888 677889999999877776 77899999999
Q ss_pred hhc------------ccChHHHHHHHHHHHHHHHHhheee
Q 008417 288 MVD------------AYGVRFVFGVTALLPLITSGVAVLV 315 (566)
Q Consensus 288 l~~------------~~gwr~~f~i~~i~~~~~~~~~~~~ 315 (566)
+.+ ..||+..|++.+++.++..+..+++
T Consensus 409 i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 409 IADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 998 5789999999877777754444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=116.01 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=117.2
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchH--HHH
Q 008417 153 LAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESK--YSA 229 (566)
Q Consensus 153 ~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~--~~l 229 (566)
...+++. +++|.+..+.+.+.++..++..+ .++.|+++|| +|||+.+.++.++..++.+.+.+ .++. ..+
T Consensus 226 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 298 (377)
T TIGR00890 226 GLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-----IGRQKTMSIVFGISAVGMAAMLF-IPMLNDVLF 298 (377)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhHHHHHHHHHHHHHHH-cccchhHHH
Confidence 3345555 45899999999888888777766 6788999999 99999999998888888777766 4432 334
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHH
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT 308 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~ 308 (566)
++..++.|++.+...+....++.|.+ ++++|+..+++......+|..++|.+.+.+.+..||++.|++.+++.++.
T Consensus 299 ~~~~~~~g~~~g~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 299 LATVALVFFTWGGTISLFPSLVSDIF---GPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHhccchhccHHHHHHHh---hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 45667788887777777778899999 56678888898888889999999999999999999999999988776653
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=113.39 Aligned_cols=152 Identities=9% Similarity=0.030 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHhhcccchhhhHHH-HhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHh
Q 008417 356 VFLPTLFVFLWQATPHSDSAMFYF-TTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM 434 (566)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 434 (566)
++.+++..++.........++... +.+++|++..+.|+..+...++.+++.++.|+++||+|+|+.+.++.++..++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 444444455555544455555444 4467899999999999999999999999999999999999998888877766655
Q ss_pred HHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 435 TQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
.+.+....+ ..+....+.+. ......+.. .+..+..|+++|++++|+.+...++|..++|.+++.+.+
T Consensus 89 ~~~~~~~~~----------~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 89 AIPLVNNVT----------LVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHhHHH----------HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544333211 11111111111 222233434 788899999999999999999999999999999999875
Q ss_pred hcCCCC
Q 008417 514 LFGVTK 519 (566)
Q Consensus 514 ~~g~~~ 519 (566)
.|+..
T Consensus 158 -~g~~~ 162 (395)
T PRK10054 158 -QSINL 162 (395)
T ss_pred -hccCc
Confidence 45443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=114.95 Aligned_cols=173 Identities=10% Similarity=0.083 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
++.+.+..+..... ......+|.|+++++|++..+.+.+.+.+.++..+ .++.|+++|| ++||+.+.....+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-----~~~~~~l~~~~~~~ 281 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-----FDLQRILTVLAGLA 281 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-----hchhhHHHHHHHHH
Confidence 33333333333332 34456678899888999999999998888777777 5677999999 89999888877777
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc
Q 008417 213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY 292 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 292 (566)
.+..+++.. .++.+.+.+..++.|++.+...+...++..+..++ +++...+.......+|..++|.+.|.+.+..
T Consensus 282 ~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~ 356 (394)
T PRK03699 282 LVLMYLFVN-TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV----ASPKLVNFILTCGTIGTMLTFVVTSPIVAHF 356 (394)
T ss_pred HHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 776666655 67777777777888888777666666666666532 2344566677777899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhheeecc
Q 008417 293 GVRFVFGVTALLPLITSGVAVLVKE 317 (566)
Q Consensus 293 gwr~~f~i~~i~~~~~~~~~~~~~e 317 (566)
||+..+++.+++.++..+.++..++
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 357 GLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999988887775444444443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=123.50 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=111.8
Q ss_pred Hhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhh
Q 008417 176 FSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVER 254 (566)
Q Consensus 176 ~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~ 254 (566)
+..++.++ .++.|+++|| +|||++++++.++.+++.+++++ .++...+++++++.|++.+...+...++++|+
T Consensus 603 l~~l~~i~G~il~g~L~Dr-----~GRr~~l~~~~~lsai~~ll~~~-~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 603 LGTLAVLPGNIVSALLMDK-----IGRLRMLAGSMVLSCISCFFLSF-GNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555 5677999999 99999999999999999888887 77777788888888888888888888999999
Q ss_pred hcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhheeeccccc
Q 008417 255 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV 320 (566)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~ 320 (566)
+ +.+.|+..+++..+...+|.++||++++.+.+. +...+|++.+++.++..++.+++||+..
T Consensus 677 ~---Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~~ 738 (742)
T TIGR01299 677 Y---PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTRG 738 (742)
T ss_pred c---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9 667789999999999999999999999988754 4677888888877776666667787654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=114.21 Aligned_cols=152 Identities=9% Similarity=0.013 Sum_probs=108.4
Q ss_pred HHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc
Q 008417 363 VFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG 442 (566)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (566)
.++..+.........+.+..+.+.++.+.+++.+...++.+++.++.|++.||+|||+.+..+.++..++.+...+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 87 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333344445556667788899999999999999999999999999999999999998888777666555443311
Q ss_pred cccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 443 LNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
... ..+......++.++..+....+..+++.+..|+++|++++|+.+....+|..+++.+++.+.+..|+..
T Consensus 88 ~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 159 (365)
T TIGR00900 88 GGL-----NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKW 159 (365)
T ss_pred CCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 100 001222222233333333333333899999999999999999999999999999999999998876543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-10 Score=111.77 Aligned_cols=169 Identities=14% Similarity=0.106 Sum_probs=130.7
Q ss_pred cchHHHHHHHHHHHh-hhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 133 PDNFAVAMVYFVQGV-LGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
++++......+.... ........++++++ +|.+..++|.+.++..++.++ .++.|++.|| +|+|+.+.++.+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-----~g~~~~l~~~~~ 278 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-----CSARDLLLISAI 278 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-----CCHHHHHHHHHH
Confidence 334444444433333 24455567788865 899999999988877777666 5677999999 999999999999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHH-HHhHHHHHHHHHHHhHhh
Q 008417 211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCW-GSSAFGGIVSSYFSGSMV 289 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~l~ 289 (566)
...+..+.+++ +++.+.+++.+++.|+..+...+....++.+. ++++++..+++.+ ....+|.++|+.++|++.
T Consensus 279 ~~~~~~~~~~~-~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~----~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 279 ACVGRWAIIGA-IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ----PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred HHHHHHHHHHh-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 89999999999999999999988877777764 3444567777764 355799999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHhhe
Q 008417 290 DAYGVRFVFGVTALLPLITSGVAV 313 (566)
Q Consensus 290 ~~~gwr~~f~i~~i~~~~~~~~~~ 313 (566)
+++|+ ..|++.+++.++.++..+
T Consensus 354 ~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 354 PTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HhccH-HHHHHHHHHHHHHHHHHH
Confidence 99996 677777777766544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-10 Score=110.85 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=103.3
Q ss_pred hhhHH-HHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 374 SAMFY-FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 374 ~~~~~-~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
....+ .+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.+...+. .+.
T Consensus 16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~------- 85 (352)
T PF07690_consen 16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---SNF------- 85 (352)
T ss_dssp HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---CCH-------
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---hhH-------
Confidence 33444 5667889999999999999999999999999999999999999888888888874444322 111
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+......++.++..+........++.+..|+++|++++++.+....+|..+++.+++.+.+..|++.
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~ 152 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW 152 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc
Confidence 1122223333333334444444899999999999999999999999999999999999998777655
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-10 Score=111.77 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=113.6
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHH-HHhhcchHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSL-MATIVESKYSA 229 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~-~~~~~~~~~~l 229 (566)
...+++++++++|.+..+.+++.+...++..+ .++.|+++|| ++||..+ .+..+..++... ... .++.+.+
T Consensus 225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-----~~~~~~~-~~~~~~~~~~~~l~~~-~~~~~~~ 297 (390)
T PRK03545 225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-----HPSGFLL-IAIALLLVCLLLLLPA-ANSEWHL 297 (390)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-----cchhHHH-HHHHHHHHHHHHHHHH-hchHHHH
Confidence 44567778777899999999988887777666 6777999999 8887654 444444444333 334 6777788
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHH
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITS 309 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~ 309 (566)
+++.++.|++.+...+...+.+.+.. + ++++..+++......+|..+||+++|.+.+++|++..|++.+++.++.+
T Consensus 298 ~~~~~l~g~~~~~~~~~~~~~~~~~~---~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~ 373 (390)
T PRK03545 298 SVLSIFWGIAIMCIGLAMQVKVLKLA---P-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAAL 373 (390)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhC---C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence 88888999988776666666776665 3 3567788888887889999999999999999999999999998887744
Q ss_pred Hh
Q 008417 310 GV 311 (566)
Q Consensus 310 ~~ 311 (566)
+.
T Consensus 374 ~~ 375 (390)
T PRK03545 374 VW 375 (390)
T ss_pred HH
Confidence 33
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=110.15 Aligned_cols=171 Identities=17% Similarity=0.133 Sum_probs=129.7
Q ss_pred CcchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhc-chhhhcccccCcC-CCCCchHhHHH
Q 008417 132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIK-PLYGFISDSLPLF-GYRRRSYLVLS 208 (566)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~-~~~G~lsDr~~~~-G~grr~~~~~~ 208 (566)
++.++.+++.++...+. .-+..-.|.|+.|..|.|....++..+++-++.+.+ .++|++|||. + | +|.+.-++.
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl--fkg-rR~p~~~i~ 327 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL--FKG-RRGPMALIF 327 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--ccc-ccchHHHHH
Confidence 45577777777666665 556667788999999999999999999998887775 5779999993 4 3 455555666
Q ss_pred HHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHH-HHHHHHHHH
Q 008417 209 GLLGALSWSLMATIVE--SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYFS 285 (566)
Q Consensus 209 ~~~~~~~~~~~~~~~~--~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~ 285 (566)
+++..++.+.... ++ |++...++.++.|+..-...........|.. +++..|.+.|+...+..+ |...+....
T Consensus 328 ~~~i~~~~~~~w~-~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~---pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~ 403 (448)
T COG2271 328 MLLITASLVLYWL-APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFV---PKKAAGTATGFVGLFAYLIGAALAGLPL 403 (448)
T ss_pred HHHHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccc---cHhhccchhchhhhHHHHhhHHhcCCcc
Confidence 6666666666655 44 4477788888888887777667777788998 677778888888766666 777777777
Q ss_pred hHhhcccChHHHHHHHHHHHHHHH
Q 008417 286 GSMVDAYGVRFVFGVTALLPLITS 309 (566)
Q Consensus 286 ~~l~~~~gwr~~f~i~~i~~~~~~ 309 (566)
+++.+.+||...|.+..+.++++.
T Consensus 404 g~i~d~~gW~g~Fi~~~~~a~l~~ 427 (448)
T COG2271 404 GYIADTWGWDGGFIVLSIAALLAI 427 (448)
T ss_pred eeeEecCCCcchHHHHHHHHHHHH
Confidence 777788999999999887777733
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=113.80 Aligned_cols=156 Identities=14% Similarity=0.145 Sum_probs=121.1
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
...++.++.+ .|.+ +.++..+.+.++..+ .++.|++.|| ++||+.+..+.++..++.+.+.. .++.+.++
T Consensus 236 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 306 (399)
T PRK05122 236 ATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-----LGGLRVAIVSLLVEILGLLLLWL-APSPWMAL 306 (399)
T ss_pred HHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHH-hccHHHHH
Confidence 3445556654 4653 345555566666666 5778999999 89999999888888888887777 77888888
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG 310 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~ 310 (566)
+..++.|++.+...+.....+.|.. ++++++...++.+....+|..+++.+.|.+.+..||++.|++.+++.++.++
T Consensus 307 ~~~~l~G~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 383 (399)
T PRK05122 307 IGAALTGFGFSLVFPALGVEAVKRV---PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLA 383 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 8899999999887777677777777 5677888999888888899999999999999999999999999888777555
Q ss_pred hheeecccc
Q 008417 311 VAVLVKEQQ 319 (566)
Q Consensus 311 ~~~~~~e~~ 319 (566)
..+++++++
T Consensus 384 ~~~~~~~~~ 392 (399)
T PRK05122 384 LTWLLYRRA 392 (399)
T ss_pred HHHHhcccc
Confidence 555454433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.1e-10 Score=111.03 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=107.8
Q ss_pred cchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHH
Q 008417 354 PNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG 433 (566)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~ 433 (566)
|.++......++..+.............++++.++.+.+++.....+...+..++.|++.||+|||+++.++.++..++.
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGC 82 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHH
Confidence 34444444444444432222232334467788889999999999999999999999999999999999999988887765
Q ss_pred hHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 434 MTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
+.+.+.... ....++.| .+.....|.. +++.+.+|+++|++++|+.+....++..+||.++|.+.
T Consensus 83 ~~~~~~~~~-------~~~r~l~G-------~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 83 LLMLFGIHP-------LLAYGLVG-------IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHH-------HHHHHHHH-------HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554332210 00012223 5555666666 99999999999999999999999999999999999999
Q ss_pred Hh
Q 008417 513 QL 514 (566)
Q Consensus 513 ~~ 514 (566)
+.
T Consensus 149 ~~ 150 (393)
T PRK11195 149 DP 150 (393)
T ss_pred HH
Confidence 85
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-10 Score=112.92 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=117.6
Q ss_pred hhhhhHHHHHHhhcCCCH---HHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcch
Q 008417 150 LARLAVNFYLKDDLHLDP---AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES 225 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~---~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~ 225 (566)
.....++.|+.+..+... ...+.+.++..++..+ .+++|+++|| ++||+.+..+.++..++.+.... .++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~-~~~ 310 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-----IGPEKILITALIFSVLLLIPMSF-VQT 310 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccchhHHHHHHHHHHHHHHHHH-hcc
Confidence 334455666665433222 1234444445455444 6778999999 99999999998888877777776 677
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHH
Q 008417 226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP 305 (566)
Q Consensus 226 ~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~ 305 (566)
.+.+++.+++.|++.+...+....++.+.. +++++++.++.......+|..+||.++|.+.+..||++.|++.+++.
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~ 387 (408)
T PRK09874 311 PLQLGILRFLLGAADGALLPAVQTLLVYNS---SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVV 387 (408)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHhC---CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHH
Confidence 888888999999999988888777777777 55667888888877788999999999999999999999999999888
Q ss_pred HHHHHhhe
Q 008417 306 LITSGVAV 313 (566)
Q Consensus 306 ~~~~~~~~ 313 (566)
++..+..+
T Consensus 388 l~~~~~~~ 395 (408)
T PRK09874 388 LFNAVYSW 395 (408)
T ss_pred HHHHHHHH
Confidence 87444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-10 Score=112.27 Aligned_cols=136 Identities=10% Similarity=0.030 Sum_probs=103.3
Q ss_pred hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
..+..+.+.+++|.++.+.+++.....++..++.++.|++.||+|+|+.+..+.++..++.+........
T Consensus 24 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~---------- 93 (385)
T TIGR00710 24 YLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI---------- 93 (385)
T ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH----------
Confidence 3344556677899999999999999999999999999999999999999998888877776655433221
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
+......++.++..+.......+++.|..|+++|++++++.+....++..+++.+++.+.+..|+.
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 159 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWH 159 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 111112222232333333344488999999999999999999999999999999999998876643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-10 Score=112.12 Aligned_cols=137 Identities=10% Similarity=-0.037 Sum_probs=103.9
Q ss_pred hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
.....+.+.+++|+++.+.|++.+...++..++.++.|++.||+|+|+.+.++.++..++.++..+....+
T Consensus 42 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 112 (434)
T PRK11663 42 FNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLW--------- 112 (434)
T ss_pred HHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHH---------
Confidence 34445666778999999999999999999999999999999999999999888888877766554432211
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
......++.++..+..+.+...++.+.+|+++|++++|+.+...++|..+++.+.+.+.+.+|+++
T Consensus 113 -~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 178 (434)
T PRK11663 113 -AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY 178 (434)
T ss_pred -HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 111111222223333333444888999999999999999999999999999999999998776544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=117.72 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=115.2
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhH--HHHHHHHHHHHHHHhhcchHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV--LSGLLGALSWSLMATIVESKY 227 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~--~~~~~~~~~~~~~~~~~~~~~ 227 (566)
....+++|+.+ +|.+..+.+++.++..++.++ +++.|.++|| .++++|+... .+.++.+++.+.+.. .++++
T Consensus 260 ~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~ 334 (455)
T TIGR00892 260 PIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL---KWIRPHVQYLFSFALLFNGLTHLLCAL-AGDYT 334 (455)
T ss_pred hHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccCHHHHHHHHHHHHHHHHHHHHHHH-hchHH
Confidence 34556777755 799999999998888776665 7888999997 1122333232 333444444455555 77888
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc-ChHHHHHHHHHHHH
Q 008417 228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLPL 306 (566)
Q Consensus 228 ~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gwr~~f~i~~i~~~ 306 (566)
.+++.+++.|++.+...+...+++.|.+ ++++++..+++......+|.++||.++|.+.+.. +|++.|++.+++.+
T Consensus 335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~l 411 (455)
T TIGR00892 335 GLVIYCIFFGLSFGSVGALLFEVLMDLV---GAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVV 411 (455)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHh---hHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHH
Confidence 8889999999999988888889999999 5566788888888888999999999999999877 59999999887766
Q ss_pred HHH
Q 008417 307 ITS 309 (566)
Q Consensus 307 ~~~ 309 (566)
+..
T Consensus 412 i~~ 414 (455)
T TIGR00892 412 SAG 414 (455)
T ss_pred HHH
Confidence 643
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=112.45 Aligned_cols=167 Identities=22% Similarity=0.255 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchH-hHHHH-
Q 008417 134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSY-LVLSG- 209 (566)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~-~~~~~- 209 (566)
+++.+....+..... .......+.++++++|.+..+.+++.+...++..+ .++.|+++|| ++||+. +....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~ 290 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-----LLRRGKSLVFARK 290 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HhhcccchhHHHH
Confidence 344444444444443 45566678888888899999999988887776666 6788999999 777751 11111
Q ss_pred ------HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHH
Q 008417 210 ------LLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSY 283 (566)
Q Consensus 210 ------~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 283 (566)
++..+....... .++.+..+...++.+++.+ ..+...+++.|.. ++++|+..+++......+|..++|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~~~~~ 365 (399)
T TIGR00893 291 TAIIAGLVLSLLMFATNY-VNIPYAALALVALGFFGLG-AGAIGWALISDNA---PGNIAGLTGGLINSLGNLGGIVGPI 365 (399)
T ss_pred HHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhc---ChhHHHHHHHHHHHHHHHhhhhhhH
Confidence 111111111111 2244444444444444444 6778888999999 6667888999988888999999999
Q ss_pred HHhHhhcccC-hHHHHHHHHHHHHHHHH
Q 008417 284 FSGSMVDAYG-VRFVFGVTALLPLITSG 310 (566)
Q Consensus 284 ~~~~l~~~~g-wr~~f~i~~i~~~~~~~ 310 (566)
+.+.+.+..| |++.|++.+++.++..+
T Consensus 366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 393 (399)
T TIGR00893 366 VIGAIAATTGSFAGALMVVAALALIGAL 393 (399)
T ss_pred HhhhhccCCCchhHHHHHHHHHHHHHHH
Confidence 9999999988 99999998887776433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=108.57 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhH
Q 008417 356 VFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT 435 (566)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 435 (566)
++......+.............+.+.+++|++..+.|+..+...++..++.++.|++.||+|+|+.+..+..+.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 34444444555544444555666777889999999999999999999999999999999999999999998888877665
Q ss_pred HHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhc
Q 008417 436 QVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~ 515 (566)
..+..+.+ .+...-++.++..+.........+.+..|++++++++++......++..+++.+++.+.+..
T Consensus 85 ~~~~~~~~----------~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 154 (382)
T PRK10091 85 FTLSSSYL----------MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF 154 (382)
T ss_pred HHHhCcHH----------HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc
Confidence 54432211 11111222222222222222367788899999999999999999999999999999998876
Q ss_pred CCCC
Q 008417 516 GVTK 519 (566)
Q Consensus 516 g~~~ 519 (566)
|++.
T Consensus 155 gwr~ 158 (382)
T PRK10091 155 SWRY 158 (382)
T ss_pred cHHH
Confidence 6443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=108.23 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=117.3
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHH
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS 228 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (566)
.....+++++++ +|.+..+.|...+++.++..+ .++.|++.|| ++||+.+..+..+..++.+++....++...
T Consensus 223 ~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (393)
T PRK09705 223 SLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-----QDRRKLLMLALVLQLVGFCGFIWLPLQLPV 296 (393)
T ss_pred HHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 344567788876 799999999998888888777 6778999999 899999888887777776655432333222
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC-hHHHHHHHHHHHHH
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-VRFVFGVTALLPLI 307 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-wr~~f~i~~i~~~~ 307 (566)
+ ..++.|++.+...+.......+..+ +++++++.+++.+....++..++|.+.|++.+..| |...|++.++..++
T Consensus 297 ~--~~~l~g~g~g~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (393)
T PRK09705 297 L--WAMVCGLGLGGAFPLCLLLALDHSV--QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVG 372 (393)
T ss_pred H--HHHHHHHhccchHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 2 2345677776666665555566653 24567888999888888999999999999998876 78888887777766
Q ss_pred -HHHhheeeccccc
Q 008417 308 -TSGVAVLVKEQQV 320 (566)
Q Consensus 308 -~~~~~~~~~e~~~ 320 (566)
..+..++.||++.
T Consensus 373 ~~~~~~~~~~~~~~ 386 (393)
T PRK09705 373 LMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHhcccccc
Confidence 3444555666554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-09 Score=107.50 Aligned_cols=134 Identities=15% Similarity=0.171 Sum_probs=103.9
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchh
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWF 454 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (566)
...+.+.+++|+++.+.|+..+...++..++.++.|++.||+|||+.+..+.++..+..+...+..+. +.
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~----------~~ 110 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSF----------SL 110 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChH----------HH
Confidence 34555677899999999999999999999999999999999999999999998888776655443221 11
Q ss_pred hhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 455 AIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
++..-++.++..+. ..|.. .++.+.+|+++|+.+.++.....+++..++|.+++.+.+.+|++.
T Consensus 111 l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~ 175 (394)
T PRK10213 111 LLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN 175 (394)
T ss_pred HHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 22222333333333 34444 888999999999999999999999999999999999998877543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=109.94 Aligned_cols=134 Identities=10% Similarity=0.063 Sum_probs=101.8
Q ss_pred hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
.......+.+++|+++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.+...+....
T Consensus 31 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---------- 100 (405)
T TIGR00891 31 VALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGY---------- 100 (405)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH----------
Confidence 3444556667889999999999999999999999999999999999999998888777776555433221
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
+.+....++.++..+.......+++.|..|+++|+++.++.+....+|..+++.+++.+.+..+
T Consensus 101 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 101 ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1112222223333333333334888999999999999999999999999999999999988765
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=108.18 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=113.0
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA 229 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (566)
....++.|+++ .|.+..+.+++.+...++.++ +.+.|+++|| +++|+++..+..+..++.+... . ....
T Consensus 219 ~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~~~~~~l~~~~~~~~~~~~~~~---~-~~~~ 288 (381)
T PRK03633 219 LYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-----FGRLLVLRVQVFVVILGSIAML---S-QAAM 288 (381)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----cCcHHHHHHHHHHHHHHHHHHh---h-hHHH
Confidence 34456777765 699999999988877776666 6778999999 9999999888777776654432 1 2233
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHH
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITS 309 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~ 309 (566)
....++.|++.....+...+++.|.. ++++++...+......++|.++||.++|++.+++||++.|.+.+.+.++..
T Consensus 289 ~~~~~l~g~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 289 APALFILGAAGFTLYPVAMAWACEKV---EHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 45667777777766777777778877 444455566666666689999999999999999999999999888777655
Q ss_pred Hhheee
Q 008417 310 GVAVLV 315 (566)
Q Consensus 310 ~~~~~~ 315 (566)
+..++.
T Consensus 366 ~~~~~~ 371 (381)
T PRK03633 366 LMLLRK 371 (381)
T ss_pred HHHHhc
Confidence 555444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-10 Score=111.26 Aligned_cols=155 Identities=15% Similarity=0.085 Sum_probs=119.5
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA 229 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (566)
....++.++++ .|.+..+.+.+.+...++..+ .++.|+++|| +|||+.+..+.+...++.+.+.. .++.+.+
T Consensus 239 ~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 311 (406)
T PRK11551 239 LLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-----LRPRRVVLLIYAGILASLAALAA-APSFAGM 311 (406)
T ss_pred HHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHh-cCcHHHH
Confidence 34446677765 699999999998888777666 6778999999 89999988877777777666666 6677777
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc-ChHHHHHHHHHHHHHH
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLPLIT 308 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gwr~~f~i~~i~~~~~ 308 (566)
.+..++.|++.+...+...+++.|.+ +.++|+...++......+|..+||.++|.+.++. +|...+++...+.++.
T Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 388 (406)
T PRK11551 312 LLAGFAAGLFVVGGQSVLYALAPLFY---PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVA 388 (406)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHc---chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHH
Confidence 77788888888777778888899999 5667888888888888999999999999998764 4566666666555554
Q ss_pred HHhheee
Q 008417 309 SGVAVLV 315 (566)
Q Consensus 309 ~~~~~~~ 315 (566)
.+..+++
T Consensus 389 ~~~~~~~ 395 (406)
T PRK11551 389 ALAALLL 395 (406)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.5e-10 Score=112.90 Aligned_cols=158 Identities=13% Similarity=0.051 Sum_probs=111.4
Q ss_pred hcccchhHHH-HHHHHHhhcccchhhhHHHHhh-c--cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHHH
Q 008417 351 VKQPNVFLPT-LFVFLWQATPHSDSAMFYFTTN-E--LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN-VPLRKIFLAN 425 (566)
Q Consensus 351 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~ 425 (566)
+++|+.+..+ ...++..+.++....++..|.+ + +|++..++|.+.....++..++.+++|++.|| +|+|+.+.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 3455544333 4455555665555666555544 4 89999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCc---hHHHHHHHHHHHhhhh
Q 008417 426 TIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGM---EATLFATLMSISNGGS 501 (566)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~g~~~g~~~~~~~lg~ 501 (566)
.++..++.+.+.+....+ .+.++ ..+.+ .+.....|.. +++.+.+|++. |++++++.+...++|.
T Consensus 86 ~~~~~~g~~~~~~~~~~~---------~~~~~-~~l~g-~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~ 154 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIYPD---------LIFYG-LGTIA-VGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS 154 (475)
T ss_pred HHHHHHHHHHHHhcccHh---------HHHHH-HHHHH-hccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH
Confidence 988887766554322111 11111 11112 3333333333 78888887654 8889999999999999
Q ss_pred hhHhHHHHHHHHhcCCCC
Q 008417 502 VLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 502 ~i~~~~~g~l~~~~g~~~ 519 (566)
.+|+.+++.+.+..|+..
T Consensus 155 ~ig~~l~g~l~~~~g~~~ 172 (475)
T TIGR00924 155 FISPLLAGVIAENYGYHV 172 (475)
T ss_pred HHHHHHHHHHHHhcChHH
Confidence 999999999998876543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.9e-09 Score=105.67 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=115.5
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHH-Hhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHH---HhhcchH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISG-FSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLM---ATIVESK 226 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s-~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~---~~~~~~~ 226 (566)
....++++.+++|.+..+++++.. ...++.++ .++.|+++|| +|||+.+.++.++.++..+.+ +...++.
T Consensus 242 ~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-----~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~ 316 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-----LSLFRALMIFGILQGVSNAGYWLLSITDKNL 316 (491)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 445567777778999999999874 44566666 5677999999 888887776665544433322 2212455
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHH
Q 008417 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL 306 (566)
Q Consensus 227 ~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~ 306 (566)
+.+.+..++..++.+.......++..+.. +++..+..+++.+....+|.++++.++|.+.+.+||+..|.+.+++.+
T Consensus 317 ~~l~~~~~l~~~~~g~~~~~~~a~~~~l~---~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l 393 (491)
T PRK11010 317 YSMGAAVFFENLCGGMGTAAFVALLMTLC---NKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAV 393 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 55555666666666665666678888888 555667788888888889999898999999999999999999988888
Q ss_pred HHHHhheeeccc
Q 008417 307 ITSGVAVLVKEQ 318 (566)
Q Consensus 307 ~~~~~~~~~~e~ 318 (566)
+.++...+++++
T Consensus 394 ~~l~~~~~~~~~ 405 (491)
T PRK11010 394 PGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHhc
Confidence 866665555554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-09 Score=107.84 Aligned_cols=134 Identities=9% Similarity=0.010 Sum_probs=99.9
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchh
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWF 454 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (566)
...+.+.+++|.+..+.++..+...++..++.++.|++.||+|+|+.+..+.++..++.+........ +.
T Consensus 24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~----------~~ 93 (392)
T PRK10473 24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS----------SL 93 (392)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH----------HH
Confidence 34555667889999999999999999999999999999999999999988887777766554432211 11
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 455 AIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
.....++.+...+.......+++.+..|+++|+++.++.+....++..++|.+++.+.+..|+.
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~ 157 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQ 157 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence 1111222222333333344488899999999999999999999999999999999888766543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-10 Score=110.68 Aligned_cols=164 Identities=23% Similarity=0.140 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
++......+..... ......++.++++++|.+..+.+.+.+...++..+ .++.|+++|| +|||+.+..+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~~~~~~~~~ 295 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-----IGRRPVLIIFTVLA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hchHHHHHHHHHHH
Confidence 33333344433333 34556678888788899999999887777666666 6788999999 88998777555444
Q ss_pred HHHH-HH-HHhh-cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHH-HHHhHHHHHHHHHHHhHh
Q 008417 213 ALSW-SL-MATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC-WGSSAFGGIVSSYFSGSM 288 (566)
Q Consensus 213 ~~~~-~~-~~~~-~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~l 288 (566)
.+.. .. .... .++.+.+++..++.|++.+...+...+++.|.+| +++|+..+++. .....+|..++|.++|.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l 372 (394)
T TIGR00883 296 ALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFP---TEVRYTGASLAYNLAGAIFGGFAPYIAAAL 372 (394)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC---ccceeeEeeehhHhHHHHHhhHHHHHHHHH
Confidence 3322 22 2221 3466677777888899888888888999999994 44556666653 344467888999999999
Q ss_pred hcccC-hHHHHHHHHHHHH
Q 008417 289 VDAYG-VRFVFGVTALLPL 306 (566)
Q Consensus 289 ~~~~g-wr~~f~i~~i~~~ 306 (566)
.++.| |++.++...+..+
T Consensus 373 ~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 373 VAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHcCcchhHHHHHHHHHH
Confidence 99888 8888777665443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=108.84 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=99.2
Q ss_pred hHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhh
Q 008417 376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFA 455 (566)
Q Consensus 376 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (566)
..+...+++|++..+.|++.+...++..++.++.|++.||+|+|+.+..+.++..++.+...+..+.+ .+
T Consensus 30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~----------~l 99 (412)
T TIGR02332 30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPE----------SL 99 (412)
T ss_pred HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHH----------HH
Confidence 34455678999999999999999999999999999999999999999988888887776655432211 11
Q ss_pred hhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 456 IGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 456 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
...-++.+ ++.....|.. .++.+.+|+++|+++.|+.+....+|..+++.+++.+.+.
T Consensus 100 ~~~r~l~G-~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 100 YLLRILVG-IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11112222 3344444555 7889999999999999999999999999999999988753
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-09 Score=100.69 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhH
Q 008417 356 VFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT 435 (566)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 435 (566)
++.+.+..|..+..........+...+++|.+...+|.+.+.+.++..++.++...+.+|+.||+++.....++.++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 33444556666666666677788888999999999999999999999999999999999999999999999999888887
Q ss_pred HHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 436 QVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
..+.++.+ ..+..=++.+ +....+.++. +...+++|+++|+++.++...-..++..+|..++.++-|.
T Consensus 95 ~alAp~f~----------~Ll~aR~~~g-~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~ 163 (394)
T COG2814 95 SALAPSFA----------VLLLARALAG-LAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL 163 (394)
T ss_pred HHHhccHH----------HHHHHHHHHH-HHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 77655432 1122222222 3333444444 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008417 515 FGVTK 519 (566)
Q Consensus 515 ~g~~~ 519 (566)
+|++.
T Consensus 164 ~GWR~ 168 (394)
T COG2814 164 FGWRA 168 (394)
T ss_pred hhHHH
Confidence 99876
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=108.42 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=118.8
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHH
Q 008417 152 RLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAA 230 (566)
Q Consensus 152 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (566)
....+.++++ .|.+. .++..+.+.++..+ +++.|++.|| +|||+.+..+..+..++.+++.+ .++.+.++
T Consensus 236 ~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 306 (392)
T PRK12382 236 GTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-----FGGVKVAIVSLLVETVGLLLLWL-APTAWVAL 306 (392)
T ss_pred HHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCeehHHHHHHHHHHHHHHHH-cccHHHHH
Confidence 3445566655 46654 34444455555555 6788999999 89999999998888888887777 77888888
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHH
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSG 310 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~ 310 (566)
+..++.|++.+...+...+.+.+.+ ++++|+...++.+....+|..+||.+.+++.++.||++.|.+.+++.++.++
T Consensus 307 ~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 307 AGAALTGAGCSLIFPALGVEVVKRV---PSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGII 383 (392)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 8899999998887777777788888 6677899999998888999999999999999999999999999988777444
Q ss_pred hh
Q 008417 311 VA 312 (566)
Q Consensus 311 ~~ 312 (566)
..
T Consensus 384 ~~ 385 (392)
T PRK12382 384 VT 385 (392)
T ss_pred HH
Confidence 33
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-09 Score=107.62 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=131.2
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhc-chhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHH
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIK-PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS 228 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~-~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (566)
.....+|.+.++.+|.+....|++.+.+.+|.+++ .+.+.+.+| +++++.+..+.++.+++.+.+++ .++.+.
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-----~~~~~lv~~~~~~~a~~~~~lal-~~~~~~ 309 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-----LSSRRLVLLASLLFALALLLLAL-SPSFWL 309 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cCcchhhHHHHHHHHHHHHHHhc-chHHHH
Confidence 34555777788889999999999999999999995 566899999 88999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHH
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT 308 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~ 308 (566)
.++..++.|++........++.+-... ++..||+.+++.......+..+|.++.|.+.+.+|.+..+.+.++..++.
T Consensus 310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~---P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 310 ALIALFLAGAAWIIANSSLNTLVQLSV---PDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS 386 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999998888888888888 77788999999888888999999999999999999999998888766553
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-09 Score=108.48 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
+.......+...+. .......+.|++..+|.++.+.+++.....++..+ .++.|+++|| +|||+++..+.++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-----~g~~~~~~~~~~~~ 337 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-----FGYRRVLVATTLGL 337 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHH
Confidence 33344444443333 33344566677666899999999887776666555 5788999999 99999999888877
Q ss_pred HHHHHHHHhhc--chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 213 ALSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 213 ~~~~~~~~~~~--~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
.+..+++.+.. .+.+.+.+..++.|++.+...+....++.+.. +++.++..+++......+|..+|+.++|.+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 338 ALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL---PDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655422 33344455677788888888888888888888 44567778888888889999999999999887
Q ss_pred ccCh
Q 008417 291 AYGV 294 (566)
Q Consensus 291 ~~gw 294 (566)
..|+
T Consensus 415 ~~g~ 418 (471)
T PRK10504 415 LFGQ 418 (471)
T ss_pred Hhhh
Confidence 6655
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-09 Score=106.32 Aligned_cols=157 Identities=10% Similarity=0.004 Sum_probs=107.6
Q ss_pred chhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHh
Q 008417 355 NVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGM 434 (566)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 434 (566)
.+....+..++..........+...+.+++|+++.+.|+..+...++..++.++.|++.||+|+|+.+..+..+..++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~ 93 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA 93 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 34444455555555544445555566678999999999999999999999999999999999999999988888877654
Q ss_pred HHHHhhh-ccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhh-hhHhHHHHHHH
Q 008417 435 TQVFLVT-GLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGS-VLGGLLGAGLT 512 (566)
Q Consensus 435 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~-~i~~~~~g~l~ 512 (566)
...+... ..+. +.......+.++............+.+..|+++|+++.|+.+...++|. .+++.+++.+.
T Consensus 94 ~~~~~~~~~~~~-------~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 94 AFIVFGLGHANY-------PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHhccCccH-------HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4322111 1111 1111111122222222222233667788899999999999999999997 57899999988
Q ss_pred HhcCCC
Q 008417 513 QLFGVT 518 (566)
Q Consensus 513 ~~~g~~ 518 (566)
+.+|..
T Consensus 167 ~~~g~~ 172 (402)
T TIGR00897 167 PAFGEM 172 (402)
T ss_pred cccchH
Confidence 877653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=106.81 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=102.7
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchh
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWF 454 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (566)
+..+.+.+++|+++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..+..+.+.+.... +.
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~----------~~ 81 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI----------DQ 81 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH----------HH
Confidence 34555667889999999999999999999999999999999999999998888887776665443221 11
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 455 AIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
.....++.++..+....+..+++.+..|+++|+++.++.+....+|..+++.+++.+.+..|+.
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 145 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWH 145 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 1122223333333333344488899999999999999999999999999999999999876654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=110.72 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=109.9
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh-cchHHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI-VESKYS 228 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~ 228 (566)
....+|.|+++++|.+..+.+++.+...++..+ .++.|+++|| +|||++++.+.++..+..+.+... ..+.+.
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-----LGTRKAYVCSLLISQLLIIPVFAIGGANVWV 368 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 345678888778899999999999888887777 5677999999 899999888877666655444331 233344
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~ 307 (566)
+.+..++.++......+....++.|.+ +.++|+..+++.+....+|..+||.++|.+.+.+||+..+.+.+....+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 369 LGLLLFFQQMLGQGISGLLPKLIGGYF---DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHhhC---CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 444445444444334455667888888 5567788888888888899999999999999999999888766554433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-09 Score=102.52 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=100.4
Q ss_pred chhhhHH-HHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh-hcccccccc
Q 008417 372 SDSAMFY-FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV-TGLNRKFGI 449 (566)
Q Consensus 372 ~~~~~~~-~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 449 (566)
...++.+ ++.+++|+++.+.+++.....++..++.++.|++.||+|+|+.+.++.++..++.+.+.+.. ..+
T Consensus 19 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~------ 92 (366)
T TIGR00886 19 AFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYS------ 92 (366)
T ss_pred HhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHH------
Confidence 3344445 36678999999999999999999999999999999999999999999888888776655443 211
Q ss_pred ccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhc
Q 008417 450 SDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 450 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~ 515 (566)
......++.+ ++...+.+...++.+..|+++|+++.++.....++|..+++.+++.+.+.+
T Consensus 93 ----~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 93 ----VLLLLRLFIG-IAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred ----HHHHHHHHHH-HhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1111122222 223334444578889999999999999999999999999998888877643
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-09 Score=105.52 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=98.0
Q ss_pred HHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhh
Q 008417 378 YFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIG 457 (566)
Q Consensus 378 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 457 (566)
.++.+++|+++.+.|+......+...+..++.|++.||+|+|+.+..+.++..+..+.+.+.... +....
T Consensus 35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~----------~~l~~ 104 (400)
T PRK11646 35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEP----------WLLWL 104 (400)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccH----------HHHHH
Confidence 34567789999999999999999999999999999999999999999888888876665443221 11111
Q ss_pred HHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 458 DSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 458 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
..++.+ ++.....|.. +++.+..|++++++++|+.+...++|..+||.++|.+. ..|+
T Consensus 105 ~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~ 163 (400)
T PRK11646 105 SCILSG-LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDF 163 (400)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 122222 2333334443 88899999999999999999999999999999999998 4443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-09 Score=105.75 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=110.0
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh---cchH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI---VESK 226 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~---~~~~ 226 (566)
.....+.|+++++|.+......+..+..+...+ .+++|+++|| +|||+.++.+.++..++.+.+... .++.
T Consensus 269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T PRK09952 269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-----FGRRRVYITGALIGTLSAFPFFMALEAQSIF 343 (438)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 345567788888899887655444344333333 6788999999 899999888876655544333221 2234
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHH-hHHHHHHHHHHHhHhhccc--ChHHHHHHHHH
Q 008417 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGS-SAFGGIVSSYFSGSMVDAY--GVRFVFGVTAL 303 (566)
Q Consensus 227 ~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~--gwr~~f~i~~i 303 (566)
+.+++..++.+++.+...+...+++.|.+ +.+.|+...++.+.. ..+|..++|.+.+++.+.. +|+..+...++
T Consensus 344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~---p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~ 420 (438)
T PRK09952 344 WIVFFSIMLANIAHDMVVCVQQPMFTEMF---GASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLA 420 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 44455667777887777777888999999 556777777765443 3478889999999998743 48888888877
Q ss_pred HHHHHHHhheeeccc
Q 008417 304 LPLITSGVAVLVKEQ 318 (566)
Q Consensus 304 ~~~~~~~~~~~~~e~ 318 (566)
+.++..+..+.++|+
T Consensus 421 ~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 421 GCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHcccc
Confidence 777766566666663
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=110.50 Aligned_cols=138 Identities=14% Similarity=-0.006 Sum_probs=105.7
Q ss_pred chhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 372 SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 372 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
......+.+.+++|.++.+.+++.....++.+++.++.|++.||+|+|+.+..+.++..++.+........
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------- 90 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNL--------- 90 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCH---------
Confidence 34445666778899999999999999999999999999999999999999999888887776655432211
Q ss_pred chhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.......++.++..+.......+++.+.+|+++|+++.++......+|..+++.++|++.+..|+.+
T Consensus 91 -~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~ 157 (485)
T TIGR00711 91 -ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRW 157 (485)
T ss_pred -HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCcee
Confidence 1122222333333333333334889999999999999999999999999999999999998877655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-09 Score=108.07 Aligned_cols=170 Identities=14% Similarity=0.038 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHh-hhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCC--CCchHh-HHHH
Q 008417 135 NFAVAMVYFVQGV-LGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGY--RRRSYL-VLSG 209 (566)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~--grr~~~-~~~~ 209 (566)
++.+.+..+.... .......+|.|++++.|.+..+.+++..++.++.++ .++.|+++|| + +||... +...
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-----~~~~r~~~~~~~~~ 329 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-----VFRGNRGATGVFFM 329 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HccCCcchHHHHHH
Confidence 4444444433332 234556788899888899999999887777777666 6788999999 6 445432 2222
Q ss_pred HHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHH-HHHHHHhH
Q 008417 210 LLGALSWSLMATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGI-VSSYFSGS 287 (566)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~ 287 (566)
.+..++.+.+... ..+.+..+++.++.|.+..........+..|.+ +++.++...++.+....+|.. +||.+.|.
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~ 406 (452)
T PRK11273 330 TLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELA---PKKAAGTAAGFTGLFGYLGGSVAASAIVGY 406 (452)
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHc---ChhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3333333222221 234444444445555443322223334567888 667788888888776677755 47999999
Q ss_pred hhcccChHHHHHHHHHHHHHHHHhh
Q 008417 288 MVDAYGVRFVFGVTALLPLITSGVA 312 (566)
Q Consensus 288 l~~~~gwr~~f~i~~i~~~~~~~~~ 312 (566)
+.++.||+..|++.++.+++.++..
T Consensus 407 l~~~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 407 TVDFFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999888777744433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=101.46 Aligned_cols=151 Identities=14% Similarity=-0.002 Sum_probs=111.6
Q ss_pred hHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHH
Q 008417 357 FLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ 436 (566)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 436 (566)
+..+...+++++.........+.+.+++|.++.+.|++.+...++..++.++.+++.||+|+|+.+..+.++..++.+.+
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 33444555666665566677777788899999999999999999999999999999999999999999999888876654
Q ss_pred HHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 437 VFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
.......+. +..+...++.+...+....+...++.+..|++++++..++.+...++|..+++.+++.+...
T Consensus 86 ~~~~~~~~~-------~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 86 WPAAEIMNY-------TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHhhccH-------HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332211111 11222222333333333344447788888999999999999999999999999999988644
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=108.09 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=100.6
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchh
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWF 454 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (566)
...+...+++|.++.+.++......++..++.++.|++.||+|+|+.+..+.++..++.+...+....+ .
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----------~ 108 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVI----------M 108 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHH----------H
Confidence 334555677899999999999999999999999999999999999999999888888776655433211 1
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 455 AIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
+...-++.++..+..+.....++.+..|+++|+++.++......+|..+++.+.+.+.+..|+.
T Consensus 109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 1111222222223333333488899999999999999999999999999998888887765543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=108.82 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=102.9
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccch
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEW 453 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (566)
....+.+.+++|+++.+.+++.....++.+++.++.|++.||+|+|+.+..+.++..++.+...+.... +
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 106 (398)
T TIGR00895 37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNV----------T 106 (398)
T ss_pred HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccch----------H
Confidence 334555667889999999999999999999999999999999999999988887777665554432211 1
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 454 FAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
......++.++..+.......+++.+..|+++|+++.++......+|..+++.+++.+.+..|+..
T Consensus 107 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~ 172 (398)
T TIGR00895 107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRS 172 (398)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccccee
Confidence 111222233333333333444899999999999999999999999999999999999998877654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=99.26 Aligned_cols=174 Identities=15% Similarity=0.079 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhcccchhhhHHHHhhccCCChhh-hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHH
Q 008417 358 LPTLFVFLWQATPHSDSAMFYFTTNELGFTPEF-LGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ 436 (566)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 436 (566)
.++++.|+..+=... ....+++.+++|+++.+ .|.+...+..+..+..++.|++.||+|.|+++.++.+...+..++.
T Consensus 31 ~lC~fGF~~e~R~n~-s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~ 109 (511)
T TIGR00806 31 YLCFYGFMAQFRPGE-SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLL 109 (511)
T ss_pred HHHHHHHHHHhhchH-HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 344555554443222 22234556689999999 9999999999999999999999999999999999988888887766
Q ss_pred HHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 437 VFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
.+.... ..+...-++.++.-+..+ ....++...+|+++|+++.|+.++...+|.++++.++++ ...+|
T Consensus 110 ~fa~Sl----------~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g 177 (511)
T TIGR00806 110 LLGTSV----------WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG 177 (511)
T ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 654321 112222333333334444 555999999999999999999999999999999999999 44455
Q ss_pred CCCccchhhHHHHHHHHHHHhhhhhhhccCCCC
Q 008417 517 VTKDSFDNLATLIILCNLSSLLPLPLIGLLPQD 549 (566)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 549 (566)
... +..+..+......+++++.+++|..
T Consensus 178 Wr~-----y~~Ln~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 178 WIS-----YSTLNIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred chh-----HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 433 3333333333334444444455643
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-09 Score=102.10 Aligned_cols=135 Identities=15% Similarity=0.062 Sum_probs=94.0
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccch
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEW 453 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (566)
....+...+++|+++.+.|++.+...++..++.+..|++.||+|||+.+....... +.......... +. .
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~-~~~~~~~~~~~--~~-------~ 80 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATF-AAAAGRLLDPF--NY-------E 80 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH-HHHHHHHHHhc--cH-------H
Confidence 44456667789999999999999999999999999999999999887655443333 22221111101 11 1
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 454 FAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
..+..-++.+ .+.....+......+..|+++|+++.++.+....+|..+++.+++.+.+..|++.
T Consensus 81 ~l~~~R~l~G-~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~ 145 (368)
T TIGR00903 81 WLLACQLLAA-LGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQL 145 (368)
T ss_pred HHHHHHHHHH-hHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 1111112222 3333344444666889999999999999999999999999999999998766554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=110.20 Aligned_cols=156 Identities=14% Similarity=0.100 Sum_probs=110.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh----cc------h
Q 008417 157 FYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI----VE------S 225 (566)
Q Consensus 157 ~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~----~~------~ 225 (566)
+++.+++|.+..+.++......+...+ .++.|+++|| ++||+.+.++.++..++.+.+++. .+ +
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-----FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 344455799888888877777666555 6778999999 899999998888777776666521 11 2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHH
Q 008417 226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP 305 (566)
Q Consensus 226 ~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~ 305 (566)
...+....++.+.......+....++.|.+ ++++|+...++......+|.++++.+.+.+.+..+|++.|++.++++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 459 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIF---PLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLN 459 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHH
Confidence 222233333332222233355566778988 56677888888888889999999999999998899999999998888
Q ss_pred HHH-HHhheeeccccc
Q 008417 306 LIT-SGVAVLVKEQQV 320 (566)
Q Consensus 306 ~~~-~~~~~~~~e~~~ 320 (566)
++. ++..++.||+++
T Consensus 460 ~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 460 VLGLIFVYFFLPETKG 475 (481)
T ss_pred HHHHHHHheecccCCC
Confidence 774 444556666543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.2e-09 Score=107.15 Aligned_cols=136 Identities=14% Similarity=0.112 Sum_probs=102.3
Q ss_pred hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
.....+...+++|.+..+.+++...+.++..++.++.|++.||+|+|+.+..+.++..++.+...+..+.
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~---------- 94 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTA---------- 94 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCH----------
Confidence 3334566677899999999999999999999999999999999999999999998888877665543221
Q ss_pred hhhhhHHHHHHHhhhhhhHHHH-HHHHhh-CCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 453 WFAIGDSLILTVLSQASFMPVL-VLAARL-CPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+.++..-.+.+ ++.....|.. ..+.+. .|+++|++++|+......+|..+||.++|.+.+..|+++
T Consensus 95 ~~li~~r~l~G-~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 95 SWLIATRALLA-IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 11112222222 3333444433 555555 477899999999999999999999999999999877654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.9e-09 Score=105.71 Aligned_cols=126 Identities=14% Similarity=0.013 Sum_probs=90.5
Q ss_pred hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHH
Q 008417 382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLI 461 (566)
Q Consensus 382 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 461 (566)
++.|+++.+.++......++..++.++.|++.||+|+|+.+..+.++..++.+...+.....+. ........++
T Consensus 54 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l 127 (438)
T TIGR00712 54 VEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSS------IAIMFVLLFL 127 (438)
T ss_pred HHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccch------HHHHHHHHHH
Confidence 3469999999999999999999999999999999999998888877777765554332110000 0111111222
Q ss_pred HHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 462 LTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
.++..+..+.+....+.+.+|+++|++++|+.+....+++.+++.+.+.+.+
T Consensus 128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 2323333333444778899999999999999999999999999888776544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=102.94 Aligned_cols=135 Identities=11% Similarity=0.052 Sum_probs=98.7
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccch
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEW 453 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (566)
.+..+.+.+++|.++.+.++......++..++.++.|++.||+|+|+.+..+..+..++.+........+
T Consensus 33 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---------- 102 (406)
T PRK15402 33 QPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIE---------- 102 (406)
T ss_pred hcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHH----------
Confidence 3334556678999999999999999999999999999999999999999888877777655544322111
Q ss_pred hhhhHHHHHHHhhhhhhHHH-HHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 454 FAIGDSLILTVLSQASFMPV-LVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
......++.+ .......+. ...+.+.+|++.+++..++......++..++|.+++.+.+..|+..
T Consensus 103 ~l~~~~~l~G-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~ 168 (406)
T PRK15402 103 QFTLLRFLQG-IGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG 168 (406)
T ss_pred HHHHHHHHHH-hHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 1111112222 222222233 3778889999999999999988888999999999999988766544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-08 Score=102.49 Aligned_cols=157 Identities=14% Similarity=0.139 Sum_probs=124.5
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHh-hhhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcc-------
Q 008417 153 LAVNFYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE------- 224 (566)
Q Consensus 153 ~~l~~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~------- 224 (566)
..+..|+.+.+|.+.+....+...+ .+.++...++|.++|++ +||++.++++.++..++.+++++.+.
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~----lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~ 83 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW----LGKFKTILYLSIVYVVGHALLSFGAIPSSGHPL 83 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhccCcccccch
Confidence 3345566677899888877776666 67777788889999985 78999999999999998888776211
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc-------cChHHH
Q 008417 225 SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-------YGVRFV 297 (566)
Q Consensus 225 ~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------~gwr~~ 297 (566)
.....+++..+..+|.+..-+...+...|.+++++++++...+.+++.+.++|.++++.+.+++.+. .+|...
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~a 163 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLA 163 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHH
Confidence 1233567778888899999999999999999776666788999999999999999999999888743 369999
Q ss_pred HHHHHHHHHHHHHhhe
Q 008417 298 FGVTALLPLITSGVAV 313 (566)
Q Consensus 298 f~i~~i~~~~~~~~~~ 313 (566)
|.+.+++.++++++..
T Consensus 164 F~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 164 FGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988887554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=102.97 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=108.9
Q ss_pred hHHHHHHhhc---CCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH
Q 008417 154 AVNFYLKDDL---HLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA 229 (566)
Q Consensus 154 ~l~~~l~~~~---g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (566)
..+.|+++.+ +.+....|.+.++..+...+ .++.|++.|| +|||+.+.++.++.++...+... .++.+.+
T Consensus 237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-----~g~~~~l~~~~~l~~l~~~~~~~-~~~~~~~ 310 (396)
T TIGR00882 237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-----IGAKNALLIAGTIMSVRIIGSSF-ATTALEV 310 (396)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHHHh-cCChHHH
Confidence 4566666554 45666778877776555554 6677999999 99999999999888888777676 7888888
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHH-HHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHH
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSL-CWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT 308 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~ 308 (566)
++.+++.|++..........+..+.. +++.++...+. .+....+|.++++.++|++.+..||+..|.+.+++.++.
T Consensus 311 ~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 311 VILKMLHAFEVPFLLVGCFKYITSQF---DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88899999887655444444455544 33344444443 345568999999999999999999999999999888773
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=101.00 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=113.2
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHH
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYS 228 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (566)
......++|+.+ .|.+..++|.+.++..+...+ .++.|++.|| +++|+.+..+.+..+++.+.++. .++.+.
T Consensus 223 ~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-----~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~ 295 (382)
T PRK11128 223 AYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-----WSARDLLLLSAICGVVRWGLMGS-TTALPW 295 (382)
T ss_pred hHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 344555677754 799999999988877666555 5778999999 99999999999988888887877 888898
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHH-HHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCW-GSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~ 307 (566)
+++..++.|++.+...+....++.+. +++++++.++... ....+|..+||.++|.+.+.+|+ ..|+..+++.++
T Consensus 296 ~~~~~~l~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 296 LIVIQILHCGTFTVCHLAAMRYIAAR----PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC----CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 89999999999888776666665554 3334566777665 43457889999999999999988 466666666555
Q ss_pred H
Q 008417 308 T 308 (566)
Q Consensus 308 ~ 308 (566)
.
T Consensus 371 ~ 371 (382)
T PRK11128 371 A 371 (382)
T ss_pred H
Confidence 3
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-09 Score=106.74 Aligned_cols=156 Identities=16% Similarity=0.149 Sum_probs=101.4
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCc-------hHhHHHHHHHHHHHHHHHhh
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRR-------SYLVLSGLLGALSWSLMATI 222 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr-------~~~~~~~~~~~~~~~~~~~~ 222 (566)
....++.|+.+++|.+..+.+.+.++..++..+ .++.|+++|| ++|| ..+.+..++.++..+++..
T Consensus 271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-----~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~- 344 (476)
T PLN00028 271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-----AARRFGMRGRLWALWIVQTLGGVFCIWLGR- 344 (476)
T ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----HHHhcCcchhHHHHHHHHHHHHHHHHHhcc-
Confidence 344567788787899999999988888776666 6788999999 5543 2333333333333344444
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHH
Q 008417 223 VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTA 302 (566)
Q Consensus 223 ~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~ 302 (566)
.++.+..++..++.+++.+.......+++.++. ++.++...++...+..+|.++++.+.+ .....+|+..|++.+
T Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~ 419 (476)
T PLN00028 345 ANSLGAAIVVMILFSIFVQAACGATFGIVPFVS----RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMG 419 (476)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccCcccC----hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHH
Confidence 555555566666667766655555566666654 246788888877655566666555433 112356999999998
Q ss_pred HHHHHHHHhheeecc
Q 008417 303 LLPLITSGVAVLVKE 317 (566)
Q Consensus 303 i~~~~~~~~~~~~~e 317 (566)
++.+++.++.++++.
T Consensus 420 ~~~~i~~~~~~~~~~ 434 (476)
T PLN00028 420 VMIIACTLPVAFIHF 434 (476)
T ss_pred HHHHHHHHHHHheec
Confidence 888776666555553
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.8e-09 Score=104.34 Aligned_cols=149 Identities=10% Similarity=-0.010 Sum_probs=102.8
Q ss_pred HHHHHHhhcccchhhhHHHH-hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHHHHHHHHHHHhHHHH
Q 008417 361 LFVFLWQATPHSDSAMFYFT-TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV-PLRKIFLANTIFGTALGMTQVF 438 (566)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~ 438 (566)
...+...+.++....+.+.| .+.+|+++.+++.+.....+...++.+++|+++||+ |+|+.+.++.++..++.+.+..
T Consensus 16 ~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~ 95 (493)
T PRK15462 16 ALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA 95 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444 456899999999999999999999999999999999 9999999998888877654432
Q ss_pred hhhccccccccccchhhhhHHHHHHHhhhhhhHHH-HHHHHhhCCCC--chHHHHHHHHHHHhhhhhhHhHHHHHHHHhc
Q 008417 439 LVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPV-LVLAARLCPEG--MEATLFATLMSISNGGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~ 515 (566)
..... . .+..+.. ....+...+.+. .+++.|.+|++ +|.+++++.....++|+.++|.+.|++.+..
T Consensus 96 ~~~~~-~-------~~~l~l~--li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~ 165 (493)
T PRK15462 96 SEIHP-S-------FLYLSLA--IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY 165 (493)
T ss_pred hhcch-h-------HHHHHHH--HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11100 0 0111111 111222333333 37889999875 6899999999999999999999999999877
Q ss_pred CCCC
Q 008417 516 GVTK 519 (566)
Q Consensus 516 g~~~ 519 (566)
|+..
T Consensus 166 Gw~~ 169 (493)
T PRK15462 166 SWAM 169 (493)
T ss_pred ChHH
Confidence 7544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.7e-08 Score=95.20 Aligned_cols=312 Identities=12% Similarity=0.030 Sum_probs=182.7
Q ss_pred hhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhc
Q 008417 178 SLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERAR 256 (566)
Q Consensus 178 ~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~ 256 (566)
...+.+ ..+.+.+.|+ .+.|..++++.....+..+.... .|-+.+++.-.+.|+|.+..+.....++.+..
T Consensus 60 Y~~ftv~~l~~psiv~~-----i~~K~~lv~ga~~y~~f~~gfl~--~N~y~~yfssallG~Gaallw~GqG~ylt~~s- 131 (461)
T KOG3098|consen 60 YAFFTVSCLFAPSIVNF-----LGPKWALVIGATCYAAFPLGFLF--PNSYYLYFSSALLGFGAALLWTGQGGYLTSNS- 131 (461)
T ss_pred HHHHHHHHHhhHHHHHH-----hhHHHHHHHHhHHHHHHHHHHHh--cchHHHHHHHHHhhhhHHheecccceehhhcC-
Confidence 344444 6677999999 99999999999999988777664 66777899999999999998888888999999
Q ss_pred ccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc--------cChH-H----------HHHHHHHHH---HHHHHhhee
Q 008417 257 GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA--------YGVR-F----------VFGVTALLP---LITSGVAVL 314 (566)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~gwr-~----------~f~i~~i~~---~~~~~~~~~ 314 (566)
.++...+..++.++....+.++|..+-..+... .+-+ + ...+.+++. .+.++...+
T Consensus 132 --t~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~ 209 (461)
T KOG3098|consen 132 --TRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF 209 (461)
T ss_pred --ChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee
Confidence 666666777788877777777776665444311 1111 0 111112221 112222333
Q ss_pred eccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhh---HHHHhhccCCCh-hh
Q 008417 315 VKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAM---FYFTTNELGFTP-EF 390 (566)
Q Consensus 315 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~-~~ 390 (566)
+|.+......+.. + +...+.++...+.+++++++.+....+..+......... -..+....+.+. ..
T Consensus 210 ~p~~~~~~~~~~~--~-------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~ 280 (461)
T KOG3098|consen 210 LPSKDVVNCKSSS--E-------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYL 280 (461)
T ss_pred cCccchhhhhhhc--c-------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhH
Confidence 3332221111110 0 256677788888899988777765544443322221111 122222333333 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc---CCcchhhHHHHHHHHHHHhHHHHhhhcccc-----c---cccccchhhhhHH
Q 008417 391 LGRVKFVTSVASLLGVGLYNGFLKN---VPLRKIFLANTIFGTALGMTQVFLVTGLNR-----K---FGISDEWFAIGDS 459 (566)
Q Consensus 391 ~g~~~~~~~~~~~~~~~~~~~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~g~~ 459 (566)
.++.....+++.+++....+.+.|| +|++..+.++.++..+..++..+....... . ..-+.......+.
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 4555566778888888887777754 577778877777776665554332211000 0 0000111222222
Q ss_pred HHHHHhhhhhhH-HHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHH
Q 008417 460 LILTVLSQASFM-PVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAG 510 (566)
Q Consensus 460 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~ 510 (566)
.+.+ ++...+. ..+.++.... ++.+..+.++.-.-..++..++-.....
T Consensus 361 ~l~G-~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 361 FLLG-FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHh-hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2333 3333433 3337777777 5778888888777777777665554443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=102.21 Aligned_cols=132 Identities=17% Similarity=0.124 Sum_probs=95.9
Q ss_pred HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhh
Q 008417 377 FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAI 456 (566)
Q Consensus 377 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (566)
...+.+++|.++.+.++..++..++..++.++.|++.||+|+|+.+..+..+..++.+...+.... +...
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~----------~~l~ 98 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA----------AQLL 98 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH----------HHHH
Confidence 334567789999999999999999999999999999999999999988877776665544432211 1111
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 457 GDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 457 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
...++.++...........++.+.+|+++++...+..+....++..++|.+++.+.+..|++
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 160 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ 160 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 11112222222222222377888899988999999998889999999999999999876644
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=101.92 Aligned_cols=132 Identities=13% Similarity=0.064 Sum_probs=97.0
Q ss_pred HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhh
Q 008417 377 FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAI 456 (566)
Q Consensus 377 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (566)
++...+++|.+....++..+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.... +.++
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~----------~~l~ 108 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSM----------TQFL 108 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCH----------HHHH
Confidence 344556789999999999999999999999999999999999999998888777766555433211 1111
Q ss_pred hHHHHHHHhhhhhhHHH-HHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 457 GDSLILTVLSQASFMPV-LVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 457 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
..-++.++ +.....+. ..++.+.+|++++++.+++.+....++..+||.+++.+.+..|++.
T Consensus 109 ~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~ 171 (413)
T PRK15403 109 IARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKV 171 (413)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 11222222 22222222 2677888999999999999999999999999999999988766443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.7e-07 Score=88.32 Aligned_cols=282 Identities=12% Similarity=0.047 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCC-----CHHHHHHHHHHhhhhhhh--cchhhhcccccCcCCCCCchHhHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHL-----DPAETAVISGFSSLPWLI--KPLYGFISDSLPLFGYRRRSYLVL 207 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~-----s~~~~g~~~s~~~~~~~~--~~~~G~lsDr~~~~G~grr~~~~~ 207 (566)
++.+.+..|+..+. + .+.--++|.+.+ +.+.+.++-+...++.++ .++.+++++| ++|++++-.
T Consensus 9 ~~~~~l~fF~il~~---Y-~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-----~~~~~lf~~ 79 (472)
T TIGR00769 9 FLPLFLMFFCILFN---Y-TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-----LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHH---H-HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHhHHH
Confidence 44455555554443 1 122245676655 446788887777776655 5788999999 999999888
Q ss_pred HHHHHHHHHHHHHhh----cc--------------------------hHHHHHHHHHHHHHHHHhHhh-hhhhhhhhhhc
Q 008417 208 SGLLGALSWSLMATI----VE--------------------------SKYSAALSILLGSLSVAFSDV-VVDSMVVERAR 256 (566)
Q Consensus 208 ~~~~~~~~~~~~~~~----~~--------------------------~~~~l~~~r~l~g~~~~~~~~-~~~~~i~~~~~ 256 (566)
....+.+..+++++. .+ +.|...++.+...+-+..... ...+++.|.+
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~- 158 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT- 158 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 877777766666553 00 123334445555555555544 6778899999
Q ss_pred ccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc-------c-cChH----HHHHHHHHHHHHHHHhheeeccccccCCC
Q 008417 257 GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-------A-YGVR----FVFGVTALLPLITSGVAVLVKEQQVLGPS 324 (566)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~-~gwr----~~f~i~~i~~~~~~~~~~~~~e~~~~~~~ 324 (566)
..++..+.+++...+.++|.++|+.+..++.+ . -.|. ..+.+.++..++.+.+..++.+....++.
T Consensus 159 --t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~ 236 (472)
T TIGR00769 159 --TIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPR 236 (472)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 66777788999998889999999988888762 1 1242 23344444444433333333221111111
Q ss_pred -cCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChh----hhhHHHHHHH
Q 008417 325 -RRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPE----FLGRVKFVTS 399 (566)
Q Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~g~~~~~~~ 399 (566)
.+.+++.+++ ++.......++..+++|.++.+.++..+|+..........--...+..-++. ..|.+....+
T Consensus 237 ~~~~~~~~~k~---k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~g 313 (472)
T TIGR00769 237 SYNPALKEKKV---KPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTG 313 (472)
T ss_pred ccchhhccccC---CCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0000000000 0111234455567888888777788888876544443332222222222332 3344445556
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 008417 400 VASLLGVGLYNGFLKNVPLRKIFLANTIFGTA 431 (566)
Q Consensus 400 ~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~ 431 (566)
+..++..++.+++.+|+|.+....+.-++..+
T Consensus 314 i~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 314 VVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666667779999999988776665555544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=103.81 Aligned_cols=154 Identities=11% Similarity=-0.004 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhhcccchhhhHH-HHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHHHHHHHHHHH
Q 008417 356 VFLPTLFVFLWQATPHSDSAMFY-FTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN-VPLRKIFLANTIFGTALG 433 (566)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~ 433 (566)
++..+...+.-.+.++....+.. +..+++|++..+++++.........+..+++|++.|| +|+|+.+.++.++..++.
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~ 95 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY 95 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 33434444444555554455444 3455689999999888888877777788899999999 999999999999998887
Q ss_pred hHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCC--chHHHHHHHHHHHhhhhhhHhHHHHH
Q 008417 434 MTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEG--MEATLFATLMSISNGGSVLGGLLGAG 510 (566)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~g~~~g~~~~~~~lg~~i~~~~~g~ 510 (566)
+.+.+..... ........+ ...+.+.+.|.. +++.+.+|++ +|+.++++.....++|..+||.++|+
T Consensus 96 ~~~~~~~~~~---------~ll~~~~~l-~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~ 165 (489)
T PRK10207 96 FMTGMSLLKP---------DLIFIALGT-IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPV 165 (489)
T ss_pred HHHHHhccch---------hHHHHHHHH-HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 7665432211 011111111 224444444444 8899999876 45778999999999999999999999
Q ss_pred HHHhcCCCC
Q 008417 511 LTQLFGVTK 519 (566)
Q Consensus 511 l~~~~g~~~ 519 (566)
+.+.+|+.+
T Consensus 166 l~~~~gw~~ 174 (489)
T PRK10207 166 IADKFGYSV 174 (489)
T ss_pred HHHhhChHH
Confidence 999887543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=103.66 Aligned_cols=159 Identities=11% Similarity=-0.015 Sum_probs=104.5
Q ss_pred hcccc-hhHHHHHHHHHhhcccchhhhHHHH-hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHHHHH
Q 008417 351 VKQPN-VFLPTLFVFLWQATPHSDSAMFYFT-TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN-VPLRKIFLANTI 427 (566)
Q Consensus 351 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~ 427 (566)
+++|+ ++..+...++..+.++....+...| .+++|++..+.+.+............+++|++.|| +|+|+.+.++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45664 5555555555555554555554444 46789999888887776655555556789999999 599999999988
Q ss_pred HHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCc--hHHHHHHHHHHHhhhhhhH
Q 008417 428 FGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGM--EATLFATLMSISNGGSVLG 504 (566)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~ 504 (566)
+..++.+++.+..... ........+.+ ++.....+.. +++.+.+|++. ++.++++.+...++|..++
T Consensus 97 ~~~ig~~l~~~~~~~~---------~~l~~~~~l~g-ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~g 166 (500)
T PRK09584 97 VLAIGYALVAWSGHDA---------GIVYMGMATIA-VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFS 166 (500)
T ss_pred HHHHHHHHHHHhcccH---------HHHHHHHHHHH-HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHH
Confidence 8887755544321111 11111111222 3333333433 78888887543 4567888899999999999
Q ss_pred hHHHHHHHHhcCCCC
Q 008417 505 GLLGAGLTQLFGVTK 519 (566)
Q Consensus 505 ~~~~g~l~~~~g~~~ 519 (566)
|.++|++.+..|+..
T Consensus 167 p~i~g~l~~~~g~~~ 181 (500)
T PRK09584 167 MLATPWLAAKYGWSV 181 (500)
T ss_pred HHHHHHHHHhhCHHH
Confidence 999999999877544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-08 Score=97.88 Aligned_cols=123 Identities=15% Similarity=0.020 Sum_probs=89.7
Q ss_pred ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc-cccccccccchhhhhHHHH
Q 008417 383 ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG-LNRKFGISDEWFAIGDSLI 461 (566)
Q Consensus 383 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~ 461 (566)
++|+++.+.+++.++..++..+..+..|++.||+|.|+++.++.++..+..+...+.... .+.. ..++...++
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~------~~lli~r~l 137 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPF------GIFIVIALL 137 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCH------HHHHHHHHH
Confidence 699999999999999999999999999999999999999998888887766655443110 0111 112222222
Q ss_pred HHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 462 LTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
.++ ++..+.+....+.+.+|+++||++.|+....+++|..+++.+...+.
T Consensus 138 ~Gi-gg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 138 CGF-AGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHH-HHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 34455555588899999999999999998888888877766665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=105.98 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=99.3
Q ss_pred hHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhh
Q 008417 376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFA 455 (566)
Q Consensus 376 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (566)
..+.+.+++|++..+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.++..+.... +..
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 86 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL----------WVM 86 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH----------HHH
Confidence 3455667789999999999999999999999999999999999999999988887776665544321 112
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHh-HHHHHHHHhcCCC
Q 008417 456 IGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGG-LLGAGLTQLFGVT 518 (566)
Q Consensus 456 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~-~~~g~l~~~~g~~ 518 (566)
+...++.++..+.......+++.+..|+++|+++.++.+....+|..+++ .+++.+.+..++.
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 150 (379)
T TIGR00881 87 AALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWH 150 (379)
T ss_pred HHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCch
Confidence 22222223333333333348899999999999999999999999999999 4666666655543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=99.84 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=109.7
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhh-hhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh-----
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSS-LPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI----- 222 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~-~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~----- 222 (566)
......++|++| .|.+.+++|++..... ....+ ..+.|++.|| +|+|+.+..+.++..+..+.....
T Consensus 226 ~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-----~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 299 (390)
T TIGR02718 226 SGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-----AGLWRTFILGVGLAGSLALLWFAQAAFWL 299 (390)
T ss_pred HHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344456778866 7999999999877764 34555 4577999999 899999888776553332222110
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHH
Q 008417 223 VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTA 302 (566)
Q Consensus 223 ~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~ 302 (566)
.++...++....+.+++.+...+.....+.+..+ +++.++..++..+...++|..+||.++|.+.+..||+..|++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~ 377 (390)
T TIGR02718 300 APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAG--DGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGT 377 (390)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 1233344455556666677776777777777762 23567888888888889999999999999999999999999988
Q ss_pred HHHHHHHH
Q 008417 303 LLPLITSG 310 (566)
Q Consensus 303 i~~~~~~~ 310 (566)
++.++.++
T Consensus 378 ~~~l~a~~ 385 (390)
T TIGR02718 378 VLAVLAIL 385 (390)
T ss_pred HHHHHHHH
Confidence 77766443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-09 Score=106.77 Aligned_cols=133 Identities=16% Similarity=0.190 Sum_probs=102.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 008417 156 NFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSIL 234 (566)
Q Consensus 156 ~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 234 (566)
+.+.+..++ +..+.+.+.++..++.++ .+++|+++|| +|||+.+.++.++.+++.+.+.+..++.+.+++..+
T Consensus 246 ~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (437)
T TIGR00792 246 VYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-----FGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLII 319 (437)
T ss_pred heeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 344444445 556667666666666656 6788999999 999999999988888887776652345667777888
Q ss_pred HHHHHHHhHhhhhhhhhhhhhccc----CcccccchhHHHHHHhHHHHHHHHHHHhHhhcccCh
Q 008417 235 LGSLSVAFSDVVVDSMVVERARGE----SQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV 294 (566)
Q Consensus 235 l~g~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw 294 (566)
+.|++.+...+...++++|..+.+ .++++|..+++.+....+|..+|+.+.|.+.+..||
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 320 LAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999988888899999987543 244568888988888899999999999999877665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=99.51 Aligned_cols=135 Identities=17% Similarity=0.135 Sum_probs=106.2
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccch
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEW 453 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (566)
...-....+++|+|+.|.+++.++..+.+.+..++.|.+.||+|.|++..++.++..+-.+...+....++. +-.....
T Consensus 34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~-~~ll~~g 112 (417)
T COG2223 34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST-WQLLVIG 112 (417)
T ss_pred HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch-HHHHHHH
Confidence 334444457899999999999999999999999999999999999999999998888877776665554321 0011111
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 454 FAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
+.+| ..+..+.....++++.+|++++|.++|++. .+|+|..+...++..+....|.
T Consensus 113 ll~G-------~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~ 168 (417)
T COG2223 113 LLLG-------LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF 168 (417)
T ss_pred HHHh-------cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence 2333 455555555588899999999999999999 9999999999999999998873
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-08 Score=99.42 Aligned_cols=133 Identities=17% Similarity=0.043 Sum_probs=96.6
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchh
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWF 454 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (566)
+..+.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+..+..++.+........ +.
T Consensus 29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~----------~~ 98 (394)
T PRK11652 29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL----------TV 98 (394)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH----------HH
Confidence 33455667899999999999999999999999999999999999999988887777665554432211 11
Q ss_pred hhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 455 AIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
.....++.+ ++.....+.. .+..+..++++++.+.+..+....++..++|.+++.+.+..|+.
T Consensus 99 l~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 162 (394)
T PRK11652 99 LIAASAIQG-LGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWR 162 (394)
T ss_pred HHHHHHHHH-hhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 111112222 2222222333 56677888889999999999999999999999999998876643
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=98.32 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=92.5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHH
Q 008417 385 GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTV 464 (566)
Q Consensus 385 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 464 (566)
+-+....|++.+.+.+..++.+..+|.++||+|||.++.++.+..++..++.....+- ..+...-+..|
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F----~afv~aR~l~G------- 132 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF----AAFVLARFLGG------- 132 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhh-------
Confidence 3345678888899999999999999999999999999999888877754444332211 00111123334
Q ss_pred hhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 465 LSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
+......+..++++|++++++|+.+++..+...++|-.+||+++|++.+
T Consensus 133 i~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 133 IFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5666666777999999999999999999999999999999999999998
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-08 Score=98.93 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=97.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhh-hhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHH---HhhcchHHHH
Q 008417 155 VNFYLKDDLHLDPAETAVISGFSS-LPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLM---ATIVESKYSA 229 (566)
Q Consensus 155 l~~~l~~~~g~s~~~~g~~~s~~~-~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~l 229 (566)
.++++.+++|.+..+++++.+... ++..+ .++.|++.|| +|||+.+.++.++..+..+.+ +...++.+.+
T Consensus 232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-----~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~ 306 (402)
T PRK11902 232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-----LGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTM 306 (402)
T ss_pred HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 345666778999999999876553 44455 5778999999 898888877776655544333 3312455655
Q ss_pred HHHHHHHHHH----HHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHH
Q 008417 230 ALSILLGSLS----VAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLP 305 (566)
Q Consensus 230 ~~~r~l~g~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~ 305 (566)
++..++.++. .+...+....++.+..+ +..++.......+|.++++.++|.+.+.+||+..|.+.++++
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~ 379 (402)
T PRK11902 307 ALAIGIENLCGGMGTAAFVALLMALCNRSFS-------ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 5555444444 44444444445554442 222344444446788777789999999999999999998888
Q ss_pred HHHHHhheeec
Q 008417 306 LITSGVAVLVK 316 (566)
Q Consensus 306 ~~~~~~~~~~~ 316 (566)
++.++.....+
T Consensus 380 ~~~~~~~~~~~ 390 (402)
T PRK11902 380 LPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHh
Confidence 77655544433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-08 Score=98.71 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=127.7
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCc--hHhHHHHHHHHHHHH-HHH-h---
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRR--SYLVLSGLLGALSWS-LMA-T--- 221 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr--~~~~~~~~~~~~~~~-~~~-~--- 221 (566)
.+......|.++++|++..++..+.-+..+..++ ..++|++.|| +|.| ++++++.++..+..+ .+. +
T Consensus 299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-----~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~ 373 (477)
T PF11700_consen 299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-----FGPKTKRTLLISLILWIIIPLYGLFGFWPS 373 (477)
T ss_pred HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444456677888999999988776566555555 6688999999 7777 788777766633322 222 0
Q ss_pred --hcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC-hHHHH
Q 008417 222 --IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-VRFVF 298 (566)
Q Consensus 222 --~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-wr~~f 298 (566)
-..+.+.+.++-++.|+..|...+...++.+++. |+++.+..+|++....-....+||++.|.+.+..| -|+.+
T Consensus 374 ~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li---P~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~ 450 (477)
T PF11700_consen 374 FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI---PPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGF 450 (477)
T ss_pred ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 0456778888999999999999999999999999 66667888999888889999999999999998876 89999
Q ss_pred HHHHHHHHHHHHhheeeccccc
Q 008417 299 GVTALLPLITSGVAVLVKEQQV 320 (566)
Q Consensus 299 ~i~~i~~~~~~~~~~~~~e~~~ 320 (566)
....++.++.+++.++++.++.
T Consensus 451 ~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 451 LFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred HHHHHHHHHHHHHHhhccchhh
Confidence 9888888887777777776554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=105.16 Aligned_cols=130 Identities=9% Similarity=-0.052 Sum_probs=89.9
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc-ccc-ccccccchhhhhHHHH
Q 008417 384 LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG-LNR-KFGISDEWFAIGDSLI 461 (566)
Q Consensus 384 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~~~~ 461 (566)
++.+..+.+++.+...++.+++.++.|++.||+|||+.+.++.++..++.+...+.... ... .........++..-++
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 129 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence 37888999999999999999999999999999999999999888877765544331100 000 0000000111222233
Q ss_pred HHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 462 LTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
.++..+.......+++.|.+|+++||.+.++.+....+|..+++.+++.+..
T Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~ 181 (479)
T PRK10077 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIAR 181 (479)
T ss_pred HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333343344899999999999999999999999999888877766553
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=104.15 Aligned_cols=128 Identities=10% Similarity=0.054 Sum_probs=97.6
Q ss_pred ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHH
Q 008417 383 ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLIL 462 (566)
Q Consensus 383 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 462 (566)
+++++..+.|++.....++.+++.++.|++.||+|+|+.+..+.++..+..++..+.... .. ...+..-++.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~-------~~l~~~r~~~ 141 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG-GI-------ALVVFCRVIQ 141 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-Cc-------hHHHHHHHHH
Confidence 678999999999999999999999999999999999999988887777665544322111 00 1122222233
Q ss_pred HHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhc-CCCC
Q 008417 463 TVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLF-GVTK 519 (566)
Q Consensus 463 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~-g~~~ 519 (566)
+ ++.....|.. .++.+..|+++|+++.|+......+|..+++.+.+.+.+.. |+..
T Consensus 142 G-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~ 199 (465)
T TIGR00894 142 G-LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM 199 (465)
T ss_pred H-HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCe
Confidence 3 3444444444 89999999999999999999999999999999999998873 6654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-08 Score=100.45 Aligned_cols=176 Identities=15% Similarity=0.212 Sum_probs=139.2
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
+.++.+++......+. ......++.+.. ..|.+..+.+.+.++..+...+ .++.|+++|+. ...++.+..++.+
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~---~~~~~~~~~~~ll 373 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP---GIRALVLFLLTLL 373 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc---ccchHHHHHHHHH
Confidence 3344444444333333 233445566665 5799999999999999887777 67889999992 1236666777788
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 211 LGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
+.+++.+.+.+ .++++.+++.-++.|++.+.........+.|+. ..++...++|+......++.++||.++|.+.+
T Consensus 374 ~~gl~~~~~p~-~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~---g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d 449 (509)
T KOG2504|consen 374 IAGLARLFLPF-ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV---GLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD 449 (509)
T ss_pred HHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcchHHHHHHHHhHHHHHcCcccceeeee
Confidence 88888888888 999999999999999999998888888999999 66677788888888889999999999999988
Q ss_pred ccC-hHHHHHHHHHHHHHHHHhheeec
Q 008417 291 AYG-VRFVFGVTALLPLITSGVAVLVK 316 (566)
Q Consensus 291 ~~g-wr~~f~i~~i~~~~~~~~~~~~~ 316 (566)
..| |...|+.+++..++...+++..+
T Consensus 450 ~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 450 ITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 877 99999999998888777777666
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-07 Score=93.79 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=125.9
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcC-CCHHHHHHHHHHhhhhhhhc-chhhhcccccCcCCCCCchHhHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLH-LDPAETAVISGFSSLPWLIK-PLYGFISDSLPLFGYRRRSYLVLSG 209 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g-~s~~~~g~~~s~~~~~~~~~-~~~G~lsDr~~~~G~grr~~~~~~~ 209 (566)
++++...+..+..+.. ...+...+.|+++ .| .+....+.+.++..++=+.- .+.+++..| +|-|+++.++.
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-----~g~~~ll~~a~ 280 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-----FGIKWLLLLAL 280 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHH
Confidence 4455554555555554 5667777888876 56 77777787766665554443 355999999 89999999999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHH----HHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHH-hHHHHHHHHHH
Q 008417 210 LLGALSWSLMATIVESKYSAALS----ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGS-SAFGGIVSSYF 284 (566)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~----r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~ 284 (566)
+..++=+.+.+..+++.+...+. ..+.|+..+........++.+.. |++.|.+.+++..+. ..+|..+|..+
T Consensus 281 ~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~---p~~~~at~Q~l~~~~~~Glg~~iG~~i 357 (400)
T PF03825_consen 281 VAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA---PPELRATAQGLYSALSFGLGGAIGSLI 357 (400)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC---CccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999888887733555544333 35699999999999999999999 666777788876543 47999999999
Q ss_pred HhHhhcccChH------HHHHHHHHHHHH-HHHhheeeccc
Q 008417 285 SGSMVDAYGVR------FVFGVTALLPLI-TSGVAVLVKEQ 318 (566)
Q Consensus 285 ~~~l~~~~gwr------~~f~i~~i~~~~-~~~~~~~~~e~ 318 (566)
+|++.+++|-+ ..+.+.+++.++ .++.+++.||+
T Consensus 358 gG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 358 GGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999887755 344555554444 34444555554
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=94.19 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=102.0
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHH
Q 008417 384 LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILT 463 (566)
Q Consensus 384 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 463 (566)
++-...+.|++++...+..++.+++.|.+.||+|+|..+++|.+++....+++.+....+ +++.+=.+.+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~----------~l~vAR~LQg 170 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP----------MLFVARSLQG 170 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH----------HHHHHHHHhh
Confidence 455678999999999999999999999999999999999999999988877766543321 2333333344
Q ss_pred HhhhhhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 464 VLSQASFMPVLVLAARLCPEGM-EATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+..........+++++.+|++. |++++|+.-.+..+|-.+||.++|.+++..|+..
T Consensus 171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~a 227 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSA 227 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcC
Confidence 4444555555588999998765 6999999999999999999999999999999876
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.7e-08 Score=95.23 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=90.6
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC-----Ccchhh-HHHHHHHHHHHhHHHHhhhcccccc
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV-----PLRKIF-LANTIFGTALGMTQVFLVTGLNRKF 447 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (566)
....+.+.++.|++..+.|+.... .+...+ .+++|.+.||+ ||||.+ ..+.++.++..+.+.+.....+
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~--- 82 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD--- 82 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh---
Confidence 344566678899999999998755 333344 78999999997 788864 4555555544333332211111
Q ss_pred ccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 448 GISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 448 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
.+.+.+..++..........+..+++.|..|+++|+.+.|+......+|..+++.+++.+.+..|
T Consensus 83 ----l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 83 ----LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 12223333333333333333344889999999999999999999999999999999999998876
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=94.85 Aligned_cols=149 Identities=17% Similarity=-0.005 Sum_probs=98.6
Q ss_pred HHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhh----cCCcchhhHHHHHHHHHHH-hHHH
Q 008417 363 VFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLK----NVPLRKIFLANTIFGTALG-MTQV 437 (566)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----r~g~~~~~~~~~~~~~~~~-~~~~ 437 (566)
.+-.++.+.....+..++.+.+|.+....+++..+..+..++..++.|+++| |+|||+.++.+..+..+.. +++.
T Consensus 13 ~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~ 92 (477)
T TIGR01301 13 AAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG 92 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666678889999999999999999999999999999999 5999998887544443333 3222
Q ss_pred Hhhhcccccc-----c--cccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCch--HHHHHHHHHHHhhhhhhHhHHH
Q 008417 438 FLVTGLNRKF-----G--ISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGME--ATLFATLMSISNGGSVLGGLLG 508 (566)
Q Consensus 438 ~~~~~~~~~~-----~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~lg~~i~~~~~ 508 (566)
+......... . ....++.+....+..+..+....|..+++.|.+|+++| +.++++.+...++|+.+|+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g 172 (477)
T TIGR01301 93 FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAG 172 (477)
T ss_pred hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111100000 0 00001111112223334444555656999999998765 6799999999999999999999
Q ss_pred HHH
Q 008417 509 AGL 511 (566)
Q Consensus 509 g~l 511 (566)
+..
T Consensus 173 ~~~ 175 (477)
T TIGR01301 173 AYS 175 (477)
T ss_pred HHH
Confidence 876
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=95.71 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=96.2
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHH--hh-cchH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMA--TI-VESK 226 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~--~~-~~~~ 226 (566)
....+|.++.+++|.+..+.+...++..+...+ +++.|+++|| ++||+.++++.++..+..+.+. .. ..+.
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-----~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-----IGRRTSMLCFGSLAALFTVPILSALQNVSSP 336 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 445678888887899998988877766554444 7888999999 8899887776654433322111 10 2233
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHH-HHHHHHHHHhHhhcccC-hHHHHHHHHHH
Q 008417 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYFSGSMVDAYG-VRFVFGVTALL 304 (566)
Q Consensus 227 ~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g-wr~~f~i~~i~ 304 (566)
...+....+.+++.+........++.|++ +++.|+...++.+...++ +....|.+.+.+ +..| |...+++.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~f---p~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~ 412 (432)
T PRK10406 337 YAAFGLVMCALLIVSFYTSISGILKAEMF---PAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLM 412 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHH
Confidence 32222223333333344445667889999 677888888888754433 233467777755 4445 55566666665
Q ss_pred HHHHHHhheeecc
Q 008417 305 PLITSGVAVLVKE 317 (566)
Q Consensus 305 ~~~~~~~~~~~~e 317 (566)
.++..+..+++++
T Consensus 413 ~~i~~~~~~~l~~ 425 (432)
T PRK10406 413 AVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHhhh
Confidence 6665545444444
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=84.30 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=108.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHh-hhhhhhcchhhhcccccCcCCCCCchHhHHHHHHH-HHHHHHHHhhcchHHHHHHH
Q 008417 155 VNFYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLG-ALSWSLMATIVESKYSAALS 232 (566)
Q Consensus 155 l~~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 232 (566)
-+.++++.||+|+...+.+.+.. .+....+|+.|.++|+ +||+-+.+.+..+. .++-..+.+ +.+.=++.
T Consensus 287 g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-----~G~n~~wv~~a~~~tl~~H~~l~F---t~lsPy~~ 358 (459)
T KOG4686|consen 287 GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-----YGFNLWWVASACILTLLGHSGLFF---TFLSPYTS 358 (459)
T ss_pred hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-----hcceehhHHHHHHHHHHHhhhHHh---hhccHHHH
Confidence 35577888999999998876655 6666779999999999 88988777665444 344444443 22333567
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC---hHHHHHH-HHHHHHHH
Q 008417 233 ILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG---VRFVFGV-TALLPLIT 308 (566)
Q Consensus 233 r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g---wr~~f~i-~~i~~~~~ 308 (566)
..+.|+.+..........++.+. ++++.|.+++..+...++|..+.|+++|++.+.-| |--.|++ .+.+.+..
T Consensus 359 m~~lGLsysllAcslWP~va~~v---pE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 359 MTFLGLSYSLLACSLWPCVASLV---PEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS 435 (459)
T ss_pred HHHHhhhHHHHHHHHhhhhhhhC---CHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence 77888888887777777888888 56677899999999999999999999999997644 4444443 34444444
Q ss_pred HHhheeecc
Q 008417 309 SGVAVLVKE 317 (566)
Q Consensus 309 ~~~~~~~~e 317 (566)
..+.+.+.+
T Consensus 436 vgil~~~N~ 444 (459)
T KOG4686|consen 436 VGILFYLNK 444 (459)
T ss_pred HHHHhheec
Confidence 444444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=96.05 Aligned_cols=138 Identities=20% Similarity=0.141 Sum_probs=92.8
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHH-HHHh--hcch
Q 008417 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWS-LMAT--IVES 225 (566)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~-~~~~--~~~~ 225 (566)
......|.|+++.+|.+..+.++......++..+ .+++|+++|| +|||+.++.+.++..+... .... ..++
T Consensus 256 ~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-----~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15075 256 LITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-----IGRRPVLIAFTVLAILTAYPALSWLVAAPS 330 (434)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4455678888877899999988887777666655 6788999999 8999888776544332221 1111 0233
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHH-hHHHHHHHHHHHhHhhcccChH
Q 008417 226 KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGS-SAFGGIVSSYFSGSMVDAYGVR 295 (566)
Q Consensus 226 ~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~gwr 295 (566)
...+.+..++.+++.+...+....++.|.+ +.+.|+...++.+.. ..++..++|.+.+++.+..|++
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~---p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 331 FARMLAVELWLSFLYGSYNGAMVVALTEVM---PAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHC---CCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 434444455566666666666667889999 555677777765432 2345667999999999888864
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=94.28 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=103.1
Q ss_pred HHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh
Q 008417 361 LFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV 440 (566)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 440 (566)
+..+.+.+.........+.+.+++|.++.+.|+......++..++.++.|++.||+|+|+.+..+..+..++.+++....
T Consensus 33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~ 112 (438)
T PRK10133 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566777788999999999999999999999999999999999999999999998888876543211
Q ss_pred hccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 441 TGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
...+. ..++..-++.++..+........++.+..+++.++...++.+....+|..+++.+++.+.
T Consensus 113 ~a~~~-------~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 113 EIMNY-------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred hcCCH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 112222223333333444444467777766666666899999999999999999988765
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=109.72 Aligned_cols=150 Identities=22% Similarity=0.148 Sum_probs=119.3
Q ss_pred hhhhhhHHHHHHhhcCCCHH-HHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchH
Q 008417 149 GLARLAVNFYLKDDLHLDPA-ETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESK 226 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~-~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~ 226 (566)
......++.++.+.+|.+.. +.+++.+...++.++ +++.|+++|| +++++.+.++.++.+++.+++.+ ..+.
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 322 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-----HIELGLVPLGALGLALSLFLLPT-APSL 322 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----ceEccchhHHHHHHHHHHHHHHH-hhhH
Confidence 34455678888888999998 999998888888777 6788999999 88888888888888888887777 7788
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc-ccChHHHHHHHHHHH
Q 008417 227 YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-AYGVRFVFGVTALLP 305 (566)
Q Consensus 227 ~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gwr~~f~i~~i~~ 305 (566)
+.++++.++.|++.+...+...+++.+.. +.+.|+.++++.+....+|.++++.+++.+.. .+++...|++.+.+.
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 323 ASVLVLFFLFGFSAGLFIVPLNALIQFRA---PEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcC---CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 88888899999999988888888888888 66677888888887778888888888776653 245666666655544
Q ss_pred HH
Q 008417 306 LI 307 (566)
Q Consensus 306 ~~ 307 (566)
++
T Consensus 400 ~~ 401 (1146)
T PRK08633 400 LI 401 (1146)
T ss_pred HH
Confidence 33
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-06 Score=80.37 Aligned_cols=312 Identities=16% Similarity=0.148 Sum_probs=162.4
Q ss_pred hhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhh
Q 008417 177 SSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERA 255 (566)
Q Consensus 177 ~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~ 255 (566)
-.++..+ ..+.-++.+| ...+.-+..+.++..++.++.++ +++.+.-+++-.+.+++.+......-++.. .+
T Consensus 68 di~P~l~~Kl~aP~fi~~-----v~y~~Ri~~~~~l~~~g~l~va~-~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHR-----VPYWIRILICVALSAAGMLLVAF-SPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred HHHHHHHHHHHhHhhhhh-----ccchHHHHHHHHHHHHHHhheee-ccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 3445544 5666677888 55555556666677888888888 899998899999999999887777666533 44
Q ss_pred cccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc-ccChHHHHHHHHHHHHHHH-HhheeeccccccCCCc--CCCCCC
Q 008417 256 RGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-AYGVRFVFGVTALLPLITS-GVAVLVKEQQVLGPSR--RQNLPL 331 (566)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gwr~~f~i~~i~~~~~~-~~~~~~~e~~~~~~~~--~~~~~~ 331 (566)
++. ..+.+..+...++++|+..-..+.. ..+.|..+.+...+.++.. ..++.+|.++...... +.+.+.
T Consensus 141 ---~~~----~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~ 213 (402)
T PF02487_consen 141 ---GKS----SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEA 213 (402)
T ss_pred ---Ccc----ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcc
Confidence 221 2333444556677777776655554 2345788888887776643 3344444332211111 000000
Q ss_pred CCC----cc-----ccchHHHHHHHHHHhcccchhHHHH-HHHHHhhcccchhhhHHH--HhhccCCChhhhhHHHHHHH
Q 008417 332 GDP----SF-----FESSKQNMFQLWEAVKQPNVFLPTL-FVFLWQATPHSDSAMFYF--TTNELGFTPEFLGRVKFVTS 399 (566)
Q Consensus 332 ~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~g~~~~~~~ 399 (566)
++. +. ....+..+++-++..| .++..++ ....|.+=+......... +.....-...++.+....+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k--~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ 291 (402)
T PF02487_consen 214 EDDLLESETSESKPDSSSKLSFKEKLKRLK--PLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQ 291 (402)
T ss_pred cccccccccccccccccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 000 00 0011112222222222 1111111 111122111111122111 11122212345666667777
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHh
Q 008417 400 VASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAAR 479 (566)
Q Consensus 400 ~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 479 (566)
+|.++++--... +.-|++.+. .++..+-.+.+.+ ..|.. .++..++.+...+..+.+++..+.-....+.+
T Consensus 292 ~GVFISRSS~~~----~rir~lwil-s~LQ~~nl~~~~l--~s~~~--fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~ 362 (402)
T PF02487_consen 292 LGVFISRSSLPF----FRIRRLWIL-SLLQVINLVFLLL--QSWYR--FIPSIWIVFVLIFYEGLLGGASYVNTFYRISE 362 (402)
T ss_pred HHHhhhhcceee----eehhhHHHH-HHHHHHHHHHHHH--HHHHH--HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 776666543222 222333322 2233222222111 11100 01222455555666777788777777777788
Q ss_pred hCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 480 LCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 480 ~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
..++++|--++|......++|..++..++-.+-.
T Consensus 363 ~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 363 EVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8889999999999988888888888777665543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-07 Score=96.53 Aligned_cols=126 Identities=9% Similarity=0.055 Sum_probs=90.8
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHH
Q 008417 385 GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTV 464 (566)
Q Consensus 385 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 464 (566)
+.+..+.+++.....++.+++.++.+++.||+|||+.+.++.++..++.++..+....... ......+..-++.++
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPK----SVMATLCFWRFWLGV 127 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccc----hHHHHHHHHHHHHHH
Confidence 3455677888899999999999999999999999999988888887776655443221100 000112222333333
Q ss_pred hhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 465 LSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
..+....+...++.|.+|++.||++.++.+....+|..+++.+...+...
T Consensus 128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~ 177 (502)
T TIGR00887 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAG 177 (502)
T ss_pred HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444459999999999999999999999999999999988876553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=96.74 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=120.0
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
+.+..+...++...+. .......+.|.++.+|.+ ...+.+..+..++..+ .+++++++|| +|+|+.+..+.+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-----~gk~~~~~~~~~ 298 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-----FGKKKVYIIGLL 298 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-----ccceeehhhhHH
Confidence 4455555566655554 445556666777767766 5566666666666555 7888999999 999999999999
Q ss_pred HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccC----cccccchhHHHHHHhHHHHHHHHHHH
Q 008417 211 LGALSWSLMATIV-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES----QSVSGSLQSLCWGSSAFGGIVSSYFS 285 (566)
Q Consensus 211 ~~~~~~~~~~~~~-~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~~ 285 (566)
+.+++.+++.+.. ++.+.+++..++.|++.+.......++++|..+.++ +++.|..++.......+|..+++.+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 299 LAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999998888732 489999999999999999999999999999997533 33457788888888889999999988
Q ss_pred hHhhcccCh
Q 008417 286 GSMVDAYGV 294 (566)
Q Consensus 286 ~~l~~~~gw 294 (566)
+.+.+..|+
T Consensus 379 g~~l~~~Gy 387 (428)
T PF13347_consen 379 GLLLALVGY 387 (428)
T ss_pred HHHHHHhCc
Confidence 888755443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=101.44 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=102.1
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhc-chHHHHH
Q 008417 153 LAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV-ESKYSAA 230 (566)
Q Consensus 153 ~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 230 (566)
...+.++++.+|.+....++......++..+ .+++++++|| +|+|+.+.++.++..++.+.+.+.. .+.+.++
T Consensus 249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-----~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 323 (448)
T PRK09848 249 ASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-----IGKKNTFLIGALLGTCGYLLFFWVSVWSLPVAL 323 (448)
T ss_pred hhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 3455566667787766555544333444444 7888999999 9999999999988888777766522 3566677
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccC----cccccchhHHHHHHhHHHHHHHHHHHhHhhcccCh
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGES----QSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV 294 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw 294 (566)
+..++.|+|.+...+...++.+|..+.++ +++.|..+++......+|..+|+.+.+.+.+..|+
T Consensus 324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77888999999999999999999986543 23457778888888889999999999888765554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-07 Score=83.22 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=116.7
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh------
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI------ 222 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~------ 222 (566)
....+...+.+++.+|+|.+|...+.....+|..++.+.|.+.|+ +|.+.++.+|.+...+++..+...
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~-----~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~ 92 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDR-----FGPWVVLLIGAVLGFVGYGLLWLAVSGRIP 92 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 345566678899999999999999988888888889999999999 999999999999999998888764
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHH
Q 008417 223 VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTA 302 (566)
Q Consensus 223 ~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~ 302 (566)
..++|.+.+..++.|.+.+..+.+......+.+ + ++||.+.++.-+...++..+-..+...+.+.-.-...+.+..
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF---P-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~ 168 (250)
T PF06813_consen 93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF---P-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAV 168 (250)
T ss_pred ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC---c-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 246778888888887777766666555556666 3 357888888877667776666655555554422333333333
Q ss_pred HHHHHHHHhheeeccccc
Q 008417 303 LLPLITSGVAVLVKEQQV 320 (566)
Q Consensus 303 i~~~~~~~~~~~~~e~~~ 320 (566)
...++.++..++++..++
T Consensus 169 ~~~~v~l~~~~~vr~~~~ 186 (250)
T PF06813_consen 169 LPAVVCLVAMFFVRPVPP 186 (250)
T ss_pred HHHHHHHHHhhheeccCC
Confidence 333345555556665543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=108.24 Aligned_cols=151 Identities=12% Similarity=0.021 Sum_probs=116.5
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh-----
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI----- 222 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~----- 222 (566)
......++.|+++.+|.+..+.|++.+.+.++.++ +++.|+++|+ .++++.+..+.++.+++.+.+++.
T Consensus 242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (1140)
T PRK06814 242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-----RITLLYVPIGALLMGLFGLDLAFASSSVP 316 (1140)
T ss_pred HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-----ceeeeeehHHHHHHHHHHHHHHhcccccc
Confidence 34455678889888999999999999999888888 5677999988 666666666655555544434330
Q ss_pred --------------cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHh
Q 008417 223 --------------VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM 288 (566)
Q Consensus 223 --------------~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 288 (566)
..+.+.+++..++.|++.+...+...+++.+.+ +.+.+|++++..+....+|..+|+++++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 317 AEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWA---NPAHRARVIAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred cccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhC---CcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 167777888889999999999888999999999 667778888888888899999999999988
Q ss_pred h-cccChHHHHHHHHHHHHH
Q 008417 289 V-DAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 289 ~-~~~gwr~~f~i~~i~~~~ 307 (566)
. ...++...|++.+++.++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 394 QALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 7 346777777766654444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=6e-08 Score=81.41 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHH
Q 008417 396 FVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLV 475 (566)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 475 (566)
....++.+++.++.+++.||+++|+.+..+..+..+..+........ +......++.+...+........
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~ 74 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI----------TVLIIARFLQGFGAAFALVAGAA 74 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34567888899999999999999999888877776665544332111 11122222333333333333338
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 476 LAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 476 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
+..|..|+++++++.++.+....++..+++.+.+.+.+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 116 (141)
T TIGR00880 75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGW 116 (141)
T ss_pred HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccch
Confidence 889999999999999999999999999999999999876554
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.7e-09 Score=98.69 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=104.2
Q ss_pred hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHH
Q 008417 381 TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSL 460 (566)
Q Consensus 381 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (566)
.+.+|.++...|++.....+...+.+++.|++.||++|++++.+|..+..++.+...+....|.. ...-.+.|
T Consensus 60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~----~l~R~~vG--- 132 (493)
T KOG1330|consen 60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQV----LLCRGFVG--- 132 (493)
T ss_pred HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHH----HHHHHHhc---
Confidence 34479999999999999999999999999999999999999999999998887766554332211 11123344
Q ss_pred HHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 461 ILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 461 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
.+.+.+.|+. +++++.+|.++|++++++++.....|..+|-..+..+.+..+.
T Consensus 133 ----iGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 133 ----IGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred ----cchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 6777777777 9999999999999999999999999999999999988887663
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-07 Score=92.62 Aligned_cols=133 Identities=12% Similarity=0.037 Sum_probs=98.2
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCC-CCchHhHHHHHHHHHHHHHHHhhcchHHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGY-RRRSYLVLSGLLGALSWSLMATIVESKYS 228 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (566)
....++.++++ .|.+..+.+.+.+...++.++ +++.|+++|| + +||+.+..+.++.+++.+.+.+ .++...
T Consensus 216 ~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 288 (355)
T TIGR00896 216 LIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-----VKDQRGIVAVLAVLQLVGLCGLLF-APMHGL 288 (355)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-----hccchHHHHHHHHHHHHHHHHHHH-hhhhHH
Confidence 34456777765 699999999998888887777 6788999999 6 6777777777777777766665 443332
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG 293 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 293 (566)
.. ..++.|++.+...+...+.+.+..+ ++++++...++......+|..++|.+.|++.++.|
T Consensus 289 ~~-~~~l~g~~~g~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 289 WA-WALVLGLGQGGAFPLALTLIGLRSR--QAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HH-HHHHHHHhhhhHhHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 4567888888877766666655442 34456777888777777888999999999998765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-08 Score=101.35 Aligned_cols=140 Identities=11% Similarity=0.000 Sum_probs=103.8
Q ss_pred hHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccc---------
Q 008417 376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRK--------- 446 (566)
Q Consensus 376 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 446 (566)
......++++++..+.|++.+...++..++.++.+++.||.+|++.+.++.++++++.+++.+.......+
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~ 134 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST 134 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence 34455667899999999999999999999999999999999999999999999999888776543100000
Q ss_pred ---------cc-----------------------cccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHH
Q 008417 447 ---------FG-----------------------ISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLM 494 (566)
Q Consensus 447 ---------~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 494 (566)
.. -....+++..-++.++..+..+....+++.|.+|+++++.+.|+..
T Consensus 135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~ 214 (633)
T TIGR00805 135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE 214 (633)
T ss_pred ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence 00 0001122233344443333333333389999999999999999999
Q ss_pred HHHhhhhhhHhHHHHHHHHhc
Q 008417 495 SISNGGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 495 ~~~~lg~~i~~~~~g~l~~~~ 515 (566)
....+|..+|+.+++.+.+.+
T Consensus 215 ~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 215 SIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred HHHHhhhHHHHHHHHHHHhcc
Confidence 999999999999999998764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-07 Score=88.08 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=109.5
Q ss_pred HhhhhhhhhHHHHHHh--hcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh
Q 008417 146 GVLGLARLAVNFYLKD--DLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI 222 (566)
Q Consensus 146 ~~~~~~~~~l~~~l~~--~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~ 222 (566)
+.........+.|+++ .+|++..+.++..+.+..++.+ ..+.++++|| +++|+.+.++.++..++.++...
T Consensus 154 g~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-----~g~~~~l~~~~~l~~~~~~l~~~- 227 (310)
T TIGR01272 154 GAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-----ISQGRYLAFNAFLAVLLSIGAAL- 227 (310)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444556667778864 3699999999999999888888 5677999999 88888888888777777665554
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHH
Q 008417 223 VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTA 302 (566)
Q Consensus 223 ~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~ 302 (566)
.++.. .....++.|++.+...+...+...+..+++. +...++. ....+|..++|.+.|.+.+..|.+..|++..
T Consensus 228 ~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~----~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 228 THGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT----SQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred cCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 44433 2345667889999998888888877774321 2222333 3456999999999999999999999988655
Q ss_pred HHHH
Q 008417 303 LLPL 306 (566)
Q Consensus 303 i~~~ 306 (566)
++.+
T Consensus 302 ~~~~ 305 (310)
T TIGR01272 302 PCYL 305 (310)
T ss_pred HHHH
Confidence 4433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-07 Score=85.92 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=128.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHH
Q 008417 141 VYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLM 219 (566)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~ 219 (566)
..+..|+...... -..|-+.++|++..++.++.....+..++ ..++|+|.|| +|-|+++..+.++..+..+..
T Consensus 262 ~~~~DGv~til~~-~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-----fg~k~vl~~~lvi~~~~~~~~ 335 (438)
T COG2270 262 FFYIDGVNTILAM-GGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-----FGSKPVLMIGLVILSIAALYL 335 (438)
T ss_pred HHHHhhHHHHHHH-HHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCceeehHHHHHHHHHHHHH
Confidence 3345555433322 23355667999999999886666555555 6788999999 889999999998888777766
Q ss_pred HhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC-hHHHH
Q 008417 220 ATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-VRFVF 298 (566)
Q Consensus 220 ~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-wr~~f 298 (566)
.+ ......+.++-.+.|+..|.......++.+++. ++++-+..+|++......+..+||.+-+.+.+..| -|..+
T Consensus 336 ~~-~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv---p~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 336 IF-LEGELDFWILGLLVGTSLGGAQASSRSYLARLV---PKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred HH-ccccHHHHHHHHHHHHhcchHHHHHHHHHHHhC---CCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 66 555666677788899999999999999999999 45555666666666669999999999999887654 77777
Q ss_pred HHHHHHHHHHHHhheeeccccc
Q 008417 299 GVTALLPLITSGVAVLVKEQQV 320 (566)
Q Consensus 299 ~i~~i~~~~~~~~~~~~~e~~~ 320 (566)
....++..+.++..+.+|++.+
T Consensus 412 ~~i~vll~iGl~~L~~v~~~~~ 433 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVPGR 433 (438)
T ss_pred HHHHHHHHhhHhhEEeecCCCC
Confidence 7777777777777778877643
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-07 Score=95.10 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=98.6
Q ss_pred cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcc
Q 008417 184 KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESK--YSAALSILLGSLSVAFSDVVVDSMVVERARGESQS 261 (566)
Q Consensus 184 ~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~ 261 (566)
.++.+.++|| +|||+.+.++.++.+++.+++.+ .++. +..++..++.+++.+........+..|.+ +.+
T Consensus 372 ~~~~~~l~dr-----~grr~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~ 442 (505)
T TIGR00898 372 KLITLLLIDR-----LGRRYTMAASLLLAGVALLLLLF-VPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY---PTV 442 (505)
T ss_pred HHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cHH
Confidence 4567899999 99999999999888888777776 4433 44555666677777777777888999999 666
Q ss_pred cccchhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhheeeccccc
Q 008417 262 VSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV 320 (566)
Q Consensus 262 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~ 320 (566)
.|+...++......+|.+++|.+.+ + ...++..++++.+++.++..+..+++||++.
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 7788888888888999999999988 3 3567788888888888776666677888654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.1e-07 Score=87.12 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=120.9
Q ss_pred hhhHHHHHHhhcC---CCHHHHHHHHHHhhhhhhhc-chhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHH
Q 008417 152 RLAVNFYLKDDLH---LDPAETAVISGFSSLPWLIK-PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY 227 (566)
Q Consensus 152 ~~~l~~~l~~~~g---~s~~~~g~~~s~~~~~~~~~-~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (566)
....+.|.+..++ .+....|.+.++..+.-++. .+..++.+| +|.|+.++++..+.++=.+++++ +++.+
T Consensus 240 dqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-----ig~k~~Lllag~i~~iRi~~~~~-~~~~~ 313 (412)
T PF01306_consen 240 DQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-----IGAKNLLLLAGVIMAIRIIGSGF-ATNPW 313 (412)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHT---SHH
T ss_pred HHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-----cChHhHHHHHHHHHHHHHHHHhh-hcchH
Confidence 3335666665443 23455666666665554443 455899999 99999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHH-HHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHH
Q 008417 228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC-WGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPL 306 (566)
Q Consensus 228 ~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~ 306 (566)
.+.+.+.+.|+-.+.......-++.+.+ |++....++.+. .....+|.++.+.++|.+.+++|.+.+|++.+.+.+
T Consensus 314 ~i~~~klLH~~e~~l~lva~fkYI~~~f---d~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~ 390 (412)
T PF01306_consen 314 VISLIKLLHALEFPLLLVAAFKYITAHF---DKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS----GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999 555555666653 566689999999999999999999999999998877
Q ss_pred H-HHHhheeeccccc
Q 008417 307 I-TSGVAVLVKEQQV 320 (566)
Q Consensus 307 ~-~~~~~~~~~e~~~ 320 (566)
+ .++..+.++++++
T Consensus 391 ~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 391 PFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHS--SSS
T ss_pred HHHHHheeeecCCCc
Confidence 6 5555666665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-06 Score=89.74 Aligned_cols=131 Identities=11% Similarity=-0.017 Sum_probs=84.5
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchh
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWF 454 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (566)
.+.....+++|++..+.+++..+.... ....++.|++.||+|+|+++.++.++..++.++..+...... ....+.
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i----~~s~~~ 122 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI----EGSVVR 122 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc----cCcHHH
Confidence 344455677899999999888664333 345667899999999999999999999998887766422110 000111
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHH
Q 008417 455 AIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGL 511 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l 511 (566)
+....++.+...+.........+.+.+| ++||.+.|+......+|+++.+.+...+
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222222223333366777786 7889999999999999998644444433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=82.80 Aligned_cols=147 Identities=12% Similarity=0.021 Sum_probs=110.5
Q ss_pred HHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh
Q 008417 361 LFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV 440 (566)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 440 (566)
...+++++.......+.+.+.+.++++..+++++......+..+.++..+++.+|+|.|+-+..+..++++++.+++-..
T Consensus 20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa 99 (422)
T COG0738 20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA 99 (422)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 44556677666777788888888999999999999999999999999999999999999999999999999877765332
Q ss_pred hccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 441 TGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
..... .+.++..++.+...+..-.....++..+.+++..+.-+.+.+.+..+|..++|.+++.+...
T Consensus 100 ~~~~y-------~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 100 SSKSY-------GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hhhhH-------HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 21111 11222112111111122222226888888888888999999999999999999999998873
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=81.22 Aligned_cols=335 Identities=13% Similarity=0.078 Sum_probs=189.5
Q ss_pred hhHHHHHH-hhcCCCHHHHHH-HHHHhhhhhhhcc-hhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH
Q 008417 153 LAVNFYLK-DDLHLDPAETAV-ISGFSSLPWLIKP-LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA 229 (566)
Q Consensus 153 ~~l~~~l~-~~~g~s~~~~g~-~~s~~~~~~~~~~-~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (566)
+.+.+|+. .+.+++..++.- +.-+..-.+.+.. +.=.+.|. .+.||++++-.+.....+.++-+ .++.+.+
T Consensus 25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~-----lrYKPvivlq~ls~v~~w~~lv~-g~sV~~m 98 (433)
T KOG3810|consen 25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDY-----LRYKPVVVLQALSGVPVWIMLVF-GPSVKAM 98 (433)
T ss_pred CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhh-----hhcceeeeeeccchhHHHHHHHh-cCCchhe
Confidence 33445554 445677766551 1111122233333 33467898 89999999988888888888887 8999998
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc--cChHHHHHHHHHHHHH
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA--YGVRFVFGVTALLPLI 307 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~gwr~~f~i~~i~~~~ 307 (566)
=+.-++.|...+. ..+..+++-+.+ +++++-++.+...+..-.|..+|..++..+++. .++...-.+......+
T Consensus 99 QvlE~FyG~~tAa-EIAYysYIYs~V---d~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~i 174 (433)
T KOG3810|consen 99 QVLEFFYGPATAA-EIAYYSYIYSKV---DPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTI 174 (433)
T ss_pred eeehhhcChHHHH-HHhhhheeeeec---CHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHH
Confidence 8888888887665 356667776666 666666677777776778888888888777643 4455555555544455
Q ss_pred HHHhheeeccccccCCCcCCCCCC-----CC----Ccccc----chHHHHHHHHHHhcccchhHHHHHHHHHhhcccchh
Q 008417 308 TSGVAVLVKEQQVLGPSRRQNLPL-----GD----PSFFE----SSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDS 374 (566)
Q Consensus 308 ~~~~~~~~~e~~~~~~~~~~~~~~-----~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (566)
..+..+++|..++..-..+++++. +. .+..+ ......+++....+||+++...+...+...++....
T Consensus 175 a~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~ 254 (433)
T KOG3810|consen 175 AVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVT 254 (433)
T ss_pred HHHHHhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHH
Confidence 666667777766321111110000 00 00001 111223355566778888777766655444443333
Q ss_pred hhHHHHhhccC--CChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccc
Q 008417 375 AMFYFTTNELG--FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDE 452 (566)
Q Consensus 375 ~~~~~~~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (566)
.+....-++.. -....-|..-++..+.+.++.+..|.+.-++.|..-++++......+.+++++.... +.
T Consensus 255 nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~-~I------- 326 (433)
T KOG3810|consen 255 NYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ-HI------- 326 (433)
T ss_pred HHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc-ce-------
Confidence 33332223332 112233445566777778888888888766665544444433333344444333322 22
Q ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHh
Q 008417 453 WFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGG 505 (566)
Q Consensus 453 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~ 505 (566)
|.+....+++....+........-+++....+.-|..+|+++++.-+-+.+-.
T Consensus 327 w~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT 379 (433)
T KOG3810|consen 327 WVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILT 379 (433)
T ss_pred ehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhhe
Confidence 22223233333333333333335566667778889999998877665555433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-06 Score=87.91 Aligned_cols=123 Identities=11% Similarity=0.006 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhHh
Q 008417 167 PAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI-VESKYSAALSILLGSLSVAFSD 244 (566)
Q Consensus 167 ~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~g~~~~~~~ 244 (566)
.+..+.+.....++.++ .+++++++|| +|||+.+..+.++..+..+.+.+. .++.+.+++..++.|++.+...
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r-----~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 337 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGK-----FDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTT 337 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555 5678999999 899999988877665443333221 4567777888899999999999
Q ss_pred hhhhhhhhhhhcccC----cccccchhHHHHHHhHHHHHHHHHHHhHhhcccCh
Q 008417 245 VVVDSMVVERARGES----QSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV 294 (566)
Q Consensus 245 ~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw 294 (566)
+...++++|..+.++ +++.+..++.......+|..+|+.++|.+.+..|+
T Consensus 338 ~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 338 PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999986432 22345567777777789999999999998876665
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-06 Score=87.84 Aligned_cols=177 Identities=18% Similarity=0.115 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHhh--hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHH
Q 008417 135 NFAVAMVYFVQGVL--GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL 211 (566)
Q Consensus 135 ~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~ 211 (566)
....+...+.+.+. ..+.......+++ -|++..+..+......+...+ ..+...+.|| +|||+.++.+..+
T Consensus 271 ~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-----~gRRpLll~~~~~ 344 (485)
T KOG0569|consen 271 LLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-----LGRRPLLLISLSL 344 (485)
T ss_pred HHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcHHHHHHHHH
Confidence 44444555555553 2333333344444 599998888876666555555 6677999999 9999999999998
Q ss_pred HHHHHHHHHhh---cchH--H---HHHHHHHHHHHHHHh-HhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHH
Q 008417 212 GALSWSLMATI---VESK--Y---SAALSILLGSLSVAF-SDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSS 282 (566)
Q Consensus 212 ~~~~~~~~~~~---~~~~--~---~l~~~r~l~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 282 (566)
..+..+++... .... | ..+++.++..++.+. ..+...-+.+|++ +++.|..++++......+..++-.
T Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf---~~~~R~aa~s~~~~~~w~~~fiv~ 421 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELF---PQSARSAAQSVATAVNWLSNFIVG 421 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhC---CccchHHHHHHHHHHHHHHHHHHH
Confidence 88887777653 1111 1 123444444444443 2556666899999 777788888887766667776666
Q ss_pred HHHhHhhcccChHHHHHHHHHHHHH-HHHhheeecccccc
Q 008417 283 YFSGSMVDAYGVRFVFGVTALLPLI-TSGVAVLVKEQQVL 321 (566)
Q Consensus 283 ~~~~~l~~~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~ 321 (566)
..-..+.+.+|- +.|++..+.+++ .+..++.+||++..
T Consensus 422 ~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 422 FAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred HHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 666666677776 777777777777 67778889999864
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-06 Score=74.01 Aligned_cols=313 Identities=12% Similarity=0.087 Sum_probs=155.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHh-hhhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 008417 157 FYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILL 235 (566)
Q Consensus 157 ~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 235 (566)
.|+-+.+|....++|.+.-.. .-..+++.+.|.++|+ -|||+.-+.-++.+.++++--- ++.+..++++|++
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-----qGRKracvtycitYiLsCiTKh--SpqYkVLmVGR~L 133 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-----QGRKRACVTYCITYILSCITKH--SPQYKVLMVGRVL 133 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-----hccccceeeehHHHHHHHHhhc--CCceEEEeehhhh
Confidence 344456788888888763222 2233447888999999 8999876665555555544322 7788889999999
Q ss_pred HHHHHHhHhhhhhhh-hhhhhcccCc--ccccchhHHH-HHHhHHHHHHHHHHHhHhhccc--ChHHHHHHHHHHHHHH-
Q 008417 236 GSLSVAFSDVVVDSM-VVERARGESQ--SVSGSLQSLC-WGSSAFGGIVSSYFSGSMVDAY--GVRFVFGVTALLPLIT- 308 (566)
Q Consensus 236 ~g~~~~~~~~~~~~~-i~~~~~~~~~--~~~~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~--gwr~~f~i~~i~~~~~- 308 (566)
.|+..+....+..++ +.|..++++- +....-++-. ..+..+-.+++.+.+-.+.+.+ |.-.+|-..+.+..+.
T Consensus 134 GGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm 213 (454)
T KOG4332|consen 134 GGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM 213 (454)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 999999888777774 4555422211 1111111111 1222334455555555666554 4455565544443332
Q ss_pred HHhheeeccccccCCCcCCCCCCCCCccccchHHHHHH-HHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCC
Q 008417 309 SGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ-LWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFT 387 (566)
Q Consensus 309 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 387 (566)
.+..--..|...+..+.+ .....++. ...+..++++..+..+..++-.. ...+.+...-.+.-+
T Consensus 214 Avil~~W~ENygdps~~k------------dlltqf~gaa~aiaSD~ki~LLG~iqsLFE~s---mytFVFLWTPaLspn 278 (454)
T KOG4332|consen 214 AVILSSWSENYGDPSENK------------DLLTQFKGAARAIASDEKIALLGAIQSLFEGS---MYTFVFLWTPALSPN 278 (454)
T ss_pred HHHHhhhhhccCChhhhH------------HHHHHhhHhHHHHhcchHHHHHHHHHHHHhhh---hheeeeeecccCCCC
Confidence 222222223222111100 11122222 22334455555444333332221 111111111122111
Q ss_pred h--hhhhHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHH
Q 008417 388 P--EFLGRVKFVTSVASLLGVGLYNGFLKNVPLR--KIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILT 463 (566)
Q Consensus 388 ~--~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 463 (566)
+ .--|.+++.+.++.++|+-+..++..|-..+ ..+.+...+..+...+..+........-. . ...+...+++.
T Consensus 279 ~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes-~--~~s~i~F~~~E 355 (454)
T KOG4332|consen 279 DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKES-P--SESLIGFCLFE 355 (454)
T ss_pred cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCC-c--hHHHHHHHHHH
Confidence 1 2357788888899999998888877664333 23333333333333332222211111111 1 11122223333
Q ss_pred HhhhhhhHHHHHHHHhhCCCCchHHHHHHHH
Q 008417 464 VLSQASFMPVLVLAARLCPEGMEATLFATLM 494 (566)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 494 (566)
.+.+..+..+.-+-.+..|++.|++.+-.+.
T Consensus 356 ~cvGlfwPSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 356 ACVGLFWPSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence 3444444444477778899998887655443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=87.68 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=102.8
Q ss_pred hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHH
Q 008417 382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLI 461 (566)
Q Consensus 382 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 461 (566)
.+++++..+-++++.....|.+++.+..+++.||+|.|+++..+.++.++..++..+..... . +.++..-++
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~-------~~~~~~R~l 137 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-F-------YLLLVLRFL 137 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-c-------hhhHHHHHH
Confidence 35788999999999999999999999999999999999999999999888877665443311 1 111222222
Q ss_pred HHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh-cCCCC
Q 008417 462 LTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL-FGVTK 519 (566)
Q Consensus 462 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~-~g~~~ 519 (566)
.+ ++.....|.. .+..+..|+++|++..++..+...+|..++-.++|.+.+. +|++.
T Consensus 138 qG-l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 138 QG-LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred hH-HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 22 4444555555 8889999999999999999999999999999999999998 77766
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.6e-05 Score=75.34 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=155.9
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhc---CCCHHHHHHHHHHhhhhhhh--cchhhhcccccCcCCCCCchHhH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDL---HLDPAETAVISGFSSLPWLI--KPLYGFISDSLPLFGYRRRSYLV 206 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~---g~s~~~~g~~~s~~~~~~~~--~~~~G~lsDr~~~~G~grr~~~~ 206 (566)
++++.+.+..|+..+. ++.. -++|.+ ..+++.+..+-....++.++ ..+..+++++ ++|.+++-
T Consensus 24 ~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~-----~s~~~lFy 93 (491)
T PF03219_consen 24 KKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNR-----LSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHH
Confidence 3466677777666665 2221 233322 12566777776666666555 4566999999 89999888
Q ss_pred HHHHHHHHHHHHHHhh--------cch----------------------HHHHHHHHHHHHHHHHhHh-hhhhhhhhhhh
Q 008417 207 LSGLLGALSWSLMATI--------VES----------------------KYSAALSILLGSLSVAFSD-VVVDSMVVERA 255 (566)
Q Consensus 207 ~~~~~~~~~~~~~~~~--------~~~----------------------~~~l~~~r~l~g~~~~~~~-~~~~~~i~~~~ 255 (566)
+....+.....+.++. .++ .|...+..++.-+-+.... ....++..|.+
T Consensus 94 ~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~it 173 (491)
T PF03219_consen 94 IIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEIT 173 (491)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8777777666666653 011 1222233333333333322 24567788888
Q ss_pred cccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc---------ccChHHHHHHH----HHHHHHHHHhheeeccccccC
Q 008417 256 RGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD---------AYGVRFVFGVT----ALLPLITSGVAVLVKEQQVLG 322 (566)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~gwr~~f~i~----~i~~~~~~~~~~~~~e~~~~~ 322 (566)
+.++..+.+++...+.++|.++++.+..++.+ ...|...+... .+.+++.+....++.+....+
T Consensus 174 ---t~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~ 250 (491)
T PF03219_consen 174 ---TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTD 250 (491)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 66677788898888888888888888777776 12354333222 222222222222232111110
Q ss_pred CCc-CCCCCCCCCccccchHHHH-HHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChh----hhhHHHH
Q 008417 323 PSR-RQNLPLGDPSFFESSKQNM-FQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPE----FLGRVKF 396 (566)
Q Consensus 323 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~g~~~~ 396 (566)
+.. ++..+.++ ++.+... ..++.++++|.+..+++...+|+..........-...++.--++. ..|-...
T Consensus 251 ~~~~~~~~~~kk----~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~ 326 (491)
T PF03219_consen 251 PRFYPSAKKKKK----KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSS 326 (491)
T ss_pred cccchhhhcccc----cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 000 00000000 0112222 334455777777777777788887655544443333333222332 3344455
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHH
Q 008417 397 VTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALG 433 (566)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~ 433 (566)
..++..++..++.+.+.+|+|.+....+.-++..+..
T Consensus 327 ~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 327 WTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 5666777777888999999998887766544444443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-06 Score=87.55 Aligned_cols=131 Identities=10% Similarity=0.017 Sum_probs=84.6
Q ss_pred HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhh
Q 008417 377 FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAI 456 (566)
Q Consensus 377 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (566)
..+...++| +.....++.....++..++.++.|+++|.+|||..++.+.++..++.+...-..+- .-.+
T Consensus 67 l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~----------~~~i 135 (599)
T PF06609_consen 67 LPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM----------NTFI 135 (599)
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH----------HHHH
Confidence 444556777 44666777788888999999999999999999999999998888887665433221 1122
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 457 GDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 457 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
+...+.++. .+........++|..|.+.|....++.....-....+++.++..+...-++++
T Consensus 136 ag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 136 AGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 333333332 22222233568999999999887776655444444456666555544333333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.6e-07 Score=87.71 Aligned_cols=169 Identities=16% Similarity=0.128 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhc-chhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIK-PLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~-~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
.+.+++..+..|.. +++...+-.++++ ++-.+...|........+-+.- ++.+++.++ +|+-+++.+++...
T Consensus 373 ~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-----iGHv~v~~lgLa~~ 446 (618)
T KOG3762|consen 373 ILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-----IGHVNVMYLGLACN 446 (618)
T ss_pred EEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHH-----hcccceeeehhhHH
Confidence 33344444555554 6667777666654 6777777776655556665554 455999999 99999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHH-HhHHHHHHHHHHHhHhhcc
Q 008417 213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWG-SSAFGGIVSSYFSGSMVDA 291 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~l~~~ 291 (566)
.+=++.... ..|.|..+-.-+++|+..+..+....+|+++.. +++.+..++++..+ ...+|--+|.++||.+.+.
T Consensus 447 ~~Rf~~~S~-L~n~W~vLPieilqgit~aliWaa~~sY~s~va---Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 447 VGRFLYYSY-LQNPWMVLPIEILQGITHALIWAAIISYASHVA---PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred HHHHHHHHH-hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC---CCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 998888888 899999999999999999999999999999999 55566666665432 3368888999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHhhe
Q 008417 292 YGVRFVFGVTALLPLITSGVAV 313 (566)
Q Consensus 292 ~gwr~~f~i~~i~~~~~~~~~~ 313 (566)
+|-|..|++.++.+++.++...
T Consensus 523 fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 523 FGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887544443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.5e-06 Score=76.76 Aligned_cols=155 Identities=16% Similarity=0.110 Sum_probs=116.0
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHH
Q 008417 149 GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKY 227 (566)
Q Consensus 149 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (566)
+....-+|.++.|. |+|..+.|.+.++..+..+. +...-.+++| . -++|+..+....++.++.+.+.+ .+...
T Consensus 225 Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R---~-~n~r~~~~~~~~~~l~G~~G~~~-~P~~~ 298 (395)
T COG2807 225 YIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARR---S-KNQRPLVVLALLLMLVGLVGLLL-APGQL 298 (395)
T ss_pred HHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHH---h-cccchHHHHHHHHHHHHHHHHHH-hhhhH
Confidence 55666778888774 99999999998888665555 4455556665 2 37888888888888888888876 44333
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc-ChHHHHHHHHHHHH
Q 008417 228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-GVRFVFGVTALLPL 306 (566)
Q Consensus 228 ~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gwr~~f~i~~i~~~ 306 (566)
.+.. .++.|+|.+...+....++.+..+ +.++.+...++.++.+.+=..+||.+.|++-|.. +|+..+...+...+
T Consensus 299 ~~lw-~~llG~G~G~~F~laL~li~~rs~--~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 299 PILW-ALLLGLGQGGAFPLALTLILLRSS--DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred HHHH-HHHHhCccchHHHHHHHHHHhhcC--ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 2222 589999999999988888888774 5556777888888766677778999999998865 59988888777766
Q ss_pred HHHHhh
Q 008417 307 ITSGVA 312 (566)
Q Consensus 307 ~~~~~~ 312 (566)
+..+.-
T Consensus 376 ~m~i~G 381 (395)
T COG2807 376 LMLIFG 381 (395)
T ss_pred HHHHHH
Confidence 644433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.5e-06 Score=83.79 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=104.8
Q ss_pred hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHH
Q 008417 382 NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLI 461 (566)
Q Consensus 382 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 461 (566)
++.++...+.+.+.+++.++.+++.+..+.+.||++..+.+....++.++..++.....+.+ ......++.|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~----~~ialr~llG---- 145 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFP----GLIALRFLLG---- 145 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHH----
Confidence 45677788999999999999999999999999999966666655555554443333222211 1122234444
Q ss_pred HHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC-CccchhhHHHHHHHHHHHhhh
Q 008417 462 LTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT-KDSFDNLATLIILCNLSSLLP 539 (566)
Q Consensus 462 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~~~~i~ 539 (566)
+......|.. .++...+.++++|..+|+..+..++|+++|++++..+.+.-|.. ...| -+.+++-+.+....+
T Consensus 146 ---l~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW--~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 146 ---LFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW--RWLFIIEGVITLVLG 220 (495)
T ss_pred ---HHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc--eeehhHHHHHHHHHH
Confidence 5555555555 89999999999999999999999999999999988876532221 1111 112233334444455
Q ss_pred hhhhccCCCCCC
Q 008417 540 LPLIGLLPQDSP 551 (566)
Q Consensus 540 ~~~~~~~~~~~~ 551 (566)
++.++++|....
T Consensus 221 i~~f~~lp~~P~ 232 (495)
T KOG2533|consen 221 IVVFFFLPDNPS 232 (495)
T ss_pred heEEEEecCChh
Confidence 566667776654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.4e-06 Score=83.89 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
++.+....+...+. .......+.+.+. ..-+....+++.++..++.++ .+++++++|| +|||+.+.++.++.
T Consensus 233 ~~~ll~~~~~~~~~~~~~~~~~~y~~~y-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-----~gkk~~~~~~~~~~ 306 (473)
T PRK10429 233 LSCLLGMALAYNIASNIINGFAIYYFTY-VIGDADLFPYYLSYAGAANLVTLILFPRLVKS-----LSRRILWAGASIFP 306 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCcHHHHHHHHHHH
Confidence 44444444443333 2333333334433 333566666666655455555 6788999999 99999998888776
Q ss_pred HHHHHHHHhh----cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccC----cccccchhHHHHHHhHHHHHHHHHH
Q 008417 213 ALSWSLMATI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES----QSVSGSLQSLCWGSSAFGGIVSSYF 284 (566)
Q Consensus 213 ~~~~~~~~~~----~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~ 284 (566)
.++.+.+... ..+.+.+++..++.|++.+...+...++++|..+..+ +++.|..++......-+|..+|+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 307 VLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6555444321 3456666777788899999988889999999986422 2234557787777778999999999
Q ss_pred HhHhhcccCh
Q 008417 285 SGSMVDAYGV 294 (566)
Q Consensus 285 ~~~l~~~~gw 294 (566)
.|++.+..|+
T Consensus 387 ~g~~l~~~Gy 396 (473)
T PRK10429 387 IGVVLGLIGY 396 (473)
T ss_pred HHHHHHHcCC
Confidence 9988765554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.6e-06 Score=76.53 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=89.7
Q ss_pred hhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccc
Q 008417 186 LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGS 265 (566)
Q Consensus 186 ~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 265 (566)
+.+.+.|| +|||+.+..+.++++++.+.+.. +.+--.+.+..+..-++......+.+.|..|++ |...|+.
T Consensus 400 It~~iver-----lGRKkTMal~l~~f~iflfll~~-c~~rn~~tvllf~arafisg~fqvaYvYtPEVy---PTavRat 470 (528)
T KOG0253|consen 400 ITGVIVER-----LGRKKTMALSLILFGIFLFLLTT-CKTRNAYTVLLFTARAFISGAFQVAYVYTPEVY---PTAVRAT 470 (528)
T ss_pred HHHHHHHH-----hcchhHHHHHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHhchheEEEEecCccc---chhhhhc
Confidence 55999999 99999999999999999888876 433323333333333444445557788999999 7778888
Q ss_pred hhHHHHHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhheeeccccc
Q 008417 266 LQSLCWGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQV 320 (566)
Q Consensus 266 ~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~ 320 (566)
..|...+...+|+++.|+++ +.....-..+..+.+.+++++.++.+++|-+++
T Consensus 471 gvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 88888888899999999998 332334445566677777776667777775443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00014 Score=69.02 Aligned_cols=134 Identities=12% Similarity=0.078 Sum_probs=82.5
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccch
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEW 453 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (566)
.++.|...+++|++..+++.++....+.+.+...+.|.+.||+|||+..+..+++..++++.... .+. .
T Consensus 54 GpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~----~~~-------~ 122 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS----SNY-------P 122 (354)
T ss_pred cchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----ccc-------H
Confidence 34444444678999999999999999999999999999999999999988888888877653221 111 1
Q ss_pred hhhhHHHHHHHhhhhhhHHHH-HHHHhh----CCCCchHHHHHHHHHH-HhhhhhhHhHHHHHHHHhcCCC
Q 008417 454 FAIGDSLILTVLSQASFMPVL-VLAARL----CPEGMEATLFATLMSI-SNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~g~~~g~~~~~-~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
.++..-++.++.....+...- -++.|. .|++..+..++..... ..+-.+++..++-.+.+..|..
T Consensus 123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 111112222222222222222 334444 4555556666655533 3344556666666777776653
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-05 Score=78.49 Aligned_cols=157 Identities=12% Similarity=0.114 Sum_probs=113.2
Q ss_pred CcchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHH
Q 008417 132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG 209 (566)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~ 209 (566)
++.+..+++.+++.... .........|.+..+|.+.....+.......+.++ .+++.++++| +|||+.+.++.
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-----~gkk~~~~~~~ 309 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-----FGKKKLFLIGL 309 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hchHHHHHHHH
Confidence 34455555555444443 45555556666655666666776666666666666 5688999999 99999999999
Q ss_pred HHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcc----cccchhHHHHHHhHHHHHHHHHH
Q 008417 210 LLGALSWSLMATIV-ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQS----VSGSLQSLCWGSSAFGGIVSSYF 284 (566)
Q Consensus 210 ~~~~~~~~~~~~~~-~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~g~~~ 284 (566)
++.+++.+++.+.. ++.+.+++..++.++|.+...+...++++|..+..+.+ +-|..++......=+|..++..+
T Consensus 310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999888743 46788888899999999999999999999998653322 23455565555566778888877
Q ss_pred HhHhhcccC
Q 008417 285 SGSMVDAYG 293 (566)
Q Consensus 285 ~~~l~~~~g 293 (566)
.|++....|
T Consensus 390 ~g~~L~~~G 398 (467)
T COG2211 390 PGWILGAIG 398 (467)
T ss_pred HHHHHHHcC
Confidence 777765444
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-05 Score=70.13 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=91.1
Q ss_pred chhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccccccc
Q 008417 372 SDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISD 451 (566)
Q Consensus 372 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (566)
.+..+.....+.+|++.++...+.....++..+| ++.|.+.|++|.+.++.++.+...++...+++...+.... ..
T Consensus 20 ~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~---~~ 95 (250)
T PF06813_consen 20 TFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS---LP 95 (250)
T ss_pred chhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc---cc
Confidence 3344445555678999999999999999998775 8889999999999999999999999988887765543110 11
Q ss_pred chhhhhHHHHHHHhhhhh-hHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 452 EWFAIGDSLILTVLSQAS-FMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
.+.......+ +..+... .........+.+| ++||++.|+.-....+++++-..+...+.+
T Consensus 96 ~~~~~~~~~l-~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 96 VWLMCLFLFL-GGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred hHHHHHHHHH-HcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 1111111111 1111111 1222244456787 689999999999998888877666555544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-05 Score=79.17 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=97.9
Q ss_pred hHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc----CCcchhhH-HHHHHHHHHHhHHHHhhhccccccccc
Q 008417 376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN----VPLRKIFL-ANTIFGTALGMTQVFLVTGLNRKFGIS 450 (566)
Q Consensus 376 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (566)
..++|.+.+|+++..+|.++.+.-+.-.+.-++.|.++|| +||||..+ ++.+..++...+++..+ .+... .
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~~s~~---~ 107 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-DLSMN---G 107 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-CCCcc---h
Confidence 4567778899999999999999999999999999999996 57766544 55566666654443222 11110 0
Q ss_pred cchhhhhHHHHHHHhhhhhhHHHHHHHHhhCC-CCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcC
Q 008417 451 DEWFAIGDSLILTVLSQASFMPVLVLAARLCP-EGMEATLFATLMSISNGGSVLGGLLGAGLTQLFG 516 (566)
Q Consensus 451 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g 516 (566)
..........+...+......|..++..++.+ +++|++..+.......+|..+++.+...+.+.+|
T Consensus 108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00122333344455666667777788889876 6889999999999999998888888877777665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-06 Score=84.71 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=117.9
Q ss_pred HHhcccchhHHH-HHHHHHhhcccchhhhHHHH-hhcc----CCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC-Ccchh
Q 008417 349 EAVKQPNVFLPT-LFVFLWQATPHSDSAMFYFT-TNEL----GFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV-PLRKI 421 (566)
Q Consensus 349 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~----g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~ 421 (566)
+.+++|+-+..+ ..-+.=.+.++.....+.+| ..++ |++++++.-++..+..-.-+..+++||+.||+ |+|+.
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 345666644443 44444455555555543333 2334 49988887777776666667788999999996 99999
Q ss_pred hHHHHHHHHHHHhHHHHhh-hccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCC--chHHHHHHHHHHH
Q 008417 422 FLANTIFGTALGMTQVFLV-TGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEG--MEATLFATLMSIS 497 (566)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~g~~~g~~~~~~ 497 (566)
+..+.+++.++.+.+.... .+. . .+.++ .....++.+.+=|.. +++.+.+|++ +|-..+++.....
T Consensus 95 I~lGail~~iGh~~L~~~~~~~~------~--gl~i~--L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~i 164 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSGP------G--GLYIG--LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGI 164 (498)
T ss_pred HHHHHHHHHHHHHHHhccccccc------c--HHHHH--HHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEe
Confidence 9999999999877765432 111 0 12222 112225555555555 8888888754 3556677788888
Q ss_pred hhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHHHHHhhhhhhhccCCC
Q 008417 498 NGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIGLLPQ 548 (566)
Q Consensus 498 ~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 548 (566)
++|+.++|.+.+++.+..|+.. .+..+++...++++.+...++
T Consensus 165 NiGsl~~p~i~~~~~~~~g~~~--------gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 165 NIGSLIAPIITGLLAINYGWHV--------GFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred ehHHHHHHHHHHHHHHhhCHHH--------HHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999988543 444555555555555544443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=79.70 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHhhcccchhhhHHHHhhc--cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCc-chhhHHHHHHHHHH
Q 008417 356 VFLPTLFVFLWQATPHSDSAMFYFTTNE--LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL-RKIFLANTIFGTAL 432 (566)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~-~~~~~~~~~~~~~~ 432 (566)
++...+..+++.........-...|.++ .+-+....|++.+...++..+++++.+++..|.+. |+.++.+.+++.++
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g 115 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIG 115 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHH
Confidence 3444455666555443333333334444 77788999999999999999999999999999886 77888898988888
Q ss_pred HhHHHHhhhccc-cccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHH
Q 008417 433 GMTQVFLVTGLN-RKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGL 511 (566)
Q Consensus 433 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l 511 (566)
.+++.......+ ..+.+....++.| ++.......-.|+++..-.++|.++++..+....+|..+||.+...+
T Consensus 116 ~llY~~l~~~~~~~~y~mL~~R~l~G-------vg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 116 NLLYLALAYVPNGVKYLMLVARILTG-------VGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHcC-------cCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 888744333222 2111111123333 34344443348898887788888998888887788888888776655
Q ss_pred HH
Q 008417 512 TQ 513 (566)
Q Consensus 512 ~~ 513 (566)
..
T Consensus 189 ~~ 190 (488)
T KOG2325|consen 189 TP 190 (488)
T ss_pred hh
Confidence 44
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0024 Score=62.93 Aligned_cols=283 Identities=13% Similarity=0.104 Sum_probs=158.0
Q ss_pred chHHHHHHHHHHHhhhhhhhhHHHHHHhhcCC---CHHHHHHHHHHhhhhhhh--cchhhhcccccCcCCCCCchHhHHH
Q 008417 134 DNFAVAMVYFVQGVLGLARLAVNFYLKDDLHL---DPAETAVISGFSSLPWLI--KPLYGFISDSLPLFGYRRRSYLVLS 208 (566)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~---s~~~~g~~~s~~~~~~~~--~~~~G~lsDr~~~~G~grr~~~~~~ 208 (566)
+++.+.++.++.++. .. +.--++|.+.+ +++.+.++-+...++..+ .++.+++.++ ..|.+++-..
T Consensus 28 kflpl~Ll~f~I~~n---y~-~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-----lt~~~vF~~~ 98 (509)
T COG3202 28 KFLPLALLFFCILFN---YN-LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-----LTREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHH---HH-HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-----cCHHHHHHHH
Confidence 355566666665554 11 22235555544 567778887777776555 6788999999 8899988888
Q ss_pred HHHHHHHHHHHHhhc--------ch-----------------------HHHHHHHHHHHHHHHHhHhh-hhhhhhhhhhc
Q 008417 209 GLLGALSWSLMATIV--------ES-----------------------KYSAALSILLGSLSVAFSDV-VVDSMVVERAR 256 (566)
Q Consensus 209 ~~~~~~~~~~~~~~~--------~~-----------------------~~~l~~~r~l~g~~~~~~~~-~~~~~i~~~~~ 256 (566)
...+....+++++.- ++ .|...+..++.-+-.+.... .......|.+
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit- 177 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT- 177 (509)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 777777777776530 11 03333333333333333222 4556778888
Q ss_pred ccCcccccchhHHHHHHhHHHHHHHHHHHhHhhccc-C---------hHHHHHHHHHHHHHHHHhheeecc----ccccC
Q 008417 257 GESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY-G---------VRFVFGVTALLPLITSGVAVLVKE----QQVLG 322 (566)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g---------wr~~f~i~~i~~~~~~~~~~~~~e----~~~~~ 322 (566)
..++..+.++++..+.+++.+++..+..++.++- . .+..+.+.++.+++.+....++.. .+...
T Consensus 178 --t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~ 255 (509)
T COG3202 178 --TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFY 255 (509)
T ss_pred --hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh
Confidence 5666777888888777888888888877776421 1 233344444443443333333321 12110
Q ss_pred --CCcCCCCCCCCCccccchH-HHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHHhhcc-CCCh---hhhhHHH
Q 008417 323 --PSRRQNLPLGDPSFFESSK-QNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNEL-GFTP---EFLGRVK 395 (566)
Q Consensus 323 --~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~---~~~g~~~ 395 (566)
..++++++ +.+ .....+....+.|.++.+.+...+|+..........---.+.. --.. ...|...
T Consensus 256 ~~~~~kk~~~--------k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~ 327 (509)
T COG3202 256 LRAKKKKKKK--------KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQ 327 (509)
T ss_pred HHHhcccccc--------cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHH
Confidence 00111111 111 1223444557777777777888888876555444432222221 1111 1233333
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHH
Q 008417 396 FVTSVA-SLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQ 436 (566)
Q Consensus 396 ~~~~~~-~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 436 (566)
...++. .++...+++.+.+|.|.....++.-+++.+..+++
T Consensus 328 ~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lF 369 (509)
T COG3202 328 IWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLF 369 (509)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444 56677888999999998776666655555554443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-05 Score=73.95 Aligned_cols=145 Identities=25% Similarity=0.238 Sum_probs=107.3
Q ss_pred hHHHHHHhhcCCCH--HHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcch--HHH
Q 008417 154 AVNFYLKDDLHLDP--AETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES--KYS 228 (566)
Q Consensus 154 ~l~~~l~~~~g~s~--~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~ 228 (566)
..+.+. .+++.+. ...++..+.+.++..+ .++.|.++|| +|||+.++.+.....++.+.+++ ..+ .+.
T Consensus 24 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 96 (338)
T COG0477 24 ALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-----YGRRKVLIIGLLLFLLGTLLLAL-APNVGLAL 96 (338)
T ss_pred HHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-----ccchHHHHHHHHHHHHHHHHHHh-CccchHHH
Confidence 334344 3345555 5788888888888777 4688999999 88998888887765555555555 444 888
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHH-HhHHHHHHHHHHHhHhhcc--cChHHHHHHHHHHH
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWG-SSAFGGIVSSYFSGSMVDA--YGVRFVFGVTALLP 305 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~gwr~~f~i~~i~~ 305 (566)
+++.|++.|++.+...+...+++.|+.++ +.+++...+.... ...+|.++++.+++.+... .+||+.|.+.....
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPE--ATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999954 1466777776666 4667888888777776644 67999777766555
Q ss_pred HH
Q 008417 306 LI 307 (566)
Q Consensus 306 ~~ 307 (566)
..
T Consensus 175 ~~ 176 (338)
T COG0477 175 LL 176 (338)
T ss_pred HH
Confidence 44
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.2e-06 Score=84.92 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=113.4
Q ss_pred hhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh---------cchHHHHH
Q 008417 161 DDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI---------VESKYSAA 230 (566)
Q Consensus 161 ~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~ 230 (566)
+.+|.++.++|++.....++.++ ..+.+.+.+| ++.|+.+.++.++.+++.+..... .++.+.++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-----~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~ 355 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-----FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVL 355 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeee
Confidence 45899999999998888777776 4566888899 899999999999888877554311 13344556
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccC-----hHHHHHHHH---
Q 008417 231 LSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYG-----VRFVFGVTA--- 302 (566)
Q Consensus 231 ~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----wr~~f~i~~--- 302 (566)
...++.+++.+....+...++.+.. +++..+..+++.....++|..+++.+++.+.++.| ++..+....
T Consensus 356 ~~~~l~~~~~g~~~~~~~~~~~~~~---p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~ 432 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMPFLVLLARLC---PSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHS 432 (468)
T ss_pred ehhHHHHHHHHHHHccHHHHHHHhC---CCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHH
Confidence 6778889999999889999999999 67788899999999999999999999999998777 444443333
Q ss_pred HHHHHHHHhheeecc
Q 008417 303 LLPLITSGVAVLVKE 317 (566)
Q Consensus 303 i~~~~~~~~~~~~~e 317 (566)
+..++.+...+++|+
T Consensus 433 ~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 433 LAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHhCCC
Confidence 233333334447785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.8e-05 Score=72.23 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=121.0
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcch-hhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh--cchHH
Q 008417 151 ARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKPL-YGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI--VESKY 227 (566)
Q Consensus 151 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~-~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~--~~~~~ 227 (566)
....+-||=.+.||++..+...+.+....+.+++.. .|.+..| . .++|+.-.+++.+..++..++.+. ..+.+
T Consensus 227 QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~---~-~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~ 302 (403)
T PF03209_consen 227 QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR---R-LGKKRTAALGCLLGALAFALIILAGPLGSPW 302 (403)
T ss_pred hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C-CCchHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 356677888889999999999999999888888764 4877774 1 577788878887777766655442 56778
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc----------ccChHHH
Q 008417 228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD----------AYGVRFV 297 (566)
Q Consensus 228 ~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~gwr~~ 297 (566)
.+...-++.|++.|...+...+.+.|+. .+++.|..+|.+.....++..+|..++|.+.+ ..+|-.+
T Consensus 303 ~~~~~~~l~G~g~G~f~vgals~mM~lt---~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~V 379 (403)
T PF03209_consen 303 LFRPGVFLLGLGNGLFTVGALSLMMDLT---SAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVV 379 (403)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 8899999999999999999999999999 56667788888888888999999999988753 2357778
Q ss_pred HHHHHHHHHHHHHhh
Q 008417 298 FGVTALLPLITSGVA 312 (566)
Q Consensus 298 f~i~~i~~~~~~~~~ 312 (566)
|.+.++..++.+++.
T Consensus 380 F~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 380 FALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877776654443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=84.14 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=93.3
Q ss_pred ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHH
Q 008417 383 ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLIL 462 (566)
Q Consensus 383 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 462 (566)
..+.+.....+..++..+|.++|.+++|.++||+|||+++..+.++..+..+...+..+.+ .....-++.
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~----------~~~~~Rfl~ 181 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW----------MFLIFRFLS 181 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH----------HHHHHHHHH
Confidence 4456777788888999999999999999999999999999999999988876655543321 222333333
Q ss_pred HHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 463 TVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
++...........+..|.+++++|+.+..+ ......++.+++..++++..
T Consensus 182 G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 182 GFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred HhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 444455555555888999999999999999 88888888888888888887
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.9e-06 Score=78.18 Aligned_cols=129 Identities=16% Similarity=0.062 Sum_probs=100.6
Q ss_pred chhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcch-H---HHHHHHHHHHHHHHH-hHhhhhhhhhhhhhcccC
Q 008417 185 PLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVES-K---YSAALSILLGSLSVA-FSDVVVDSMVVERARGES 259 (566)
Q Consensus 185 ~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~-~---~~l~~~r~l~g~~~~-~~~~~~~~~i~~~~~~~~ 259 (566)
.+...++|+ .|||+..+.+.+++.+..+.++. ..| . ..++++..+..+... ........+-+|.+ +
T Consensus 366 w~tv~~id~-----iGRk~iq~~GF~~~~i~~~~~~~-~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~F---P 436 (538)
T KOG0252|consen 366 WFTVYFIDI-----IGRKYIQLMGFFIMTIFFFVIAG-PYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIF---P 436 (538)
T ss_pred eEEEEEeeh-----hhhHHHHHhhHHHHHHHHHHHcC-CcccccccCceeehHHHHHHHHhcCCCceeEEeehhhc---h
Confidence 355899999 99999999999999999998887 555 1 122233333332222 23334445678999 7
Q ss_pred cccccchhHHHHHHhHHHHHHHHHHHhHhhc-----ccChHHHHHHHHHHHHHHHHhheeeccccccC
Q 008417 260 QSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD-----AYGVRFVFGVTALLPLITSGVAVLVKEQQVLG 322 (566)
Q Consensus 260 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-----~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~ 322 (566)
.+.|+...++..+.+-+|.++|...-.++.+ ..|.|++|++.+.++++..+..+++||++...
T Consensus 437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~ 504 (538)
T KOG0252|consen 437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKS 504 (538)
T ss_pred HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccC
Confidence 7789999999999999999999999999988 78999999999999999888999999887643
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0022 Score=66.41 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=112.3
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHhh-hhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhc--c-----
Q 008417 153 LAVNFYLKDDLHLDPAETAVISGFSS-LPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV--E----- 224 (566)
Q Consensus 153 ~~l~~~l~~~~g~s~~~~g~~~s~~~-~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~--~----- 224 (566)
..+..|+.++++.+...+.-..+.+. ..+....+.+.++|-+ +||-+.+.++.++..++.+++...+ +
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f----~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~ 133 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSF----LGRYFTINIGSLISLLGLFGLTLSAMIPALLPF 133 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 45566788888987766666655553 3333345779999985 6899999999988888866554420 0
Q ss_pred --------------h---HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcc---cCcccccchhHHHHHHhHHHHHHHHHH
Q 008417 225 --------------S---KYSAALSILLGSLSVAFSDVVVDSMVVERARG---ESQSVSGSLQSLCWGSSAFGGIVSSYF 284 (566)
Q Consensus 225 --------------~---~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~g~~~ 284 (566)
+ ...++....+..+|.+..-+...++-+|-+++ +++......+.+++...++|.+++..+
T Consensus 134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV 213 (571)
T ss_pred cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence 0 12445555666677787788888888999973 334455578888888888999988888
Q ss_pred HhHhhcccChHHHHHHHHHHHHHHHHhh
Q 008417 285 SGSMVDAYGVRFVFGVTALLPLITSGVA 312 (566)
Q Consensus 285 ~~~l~~~~gwr~~f~i~~i~~~~~~~~~ 312 (566)
..++-+..||.+.|.+..+..+++++++
T Consensus 214 ~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 214 LVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 8888788999999999888777754443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-05 Score=79.76 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhh
Q 008417 390 FLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQAS 469 (566)
Q Consensus 390 ~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 469 (566)
+.+++.+...++..++.++.|+++|++|||+.+.++.++..++.++..+..... .+...-++.++..+..
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~----------~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY----------QLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHhccchhhh
Confidence 448899999999999999999999999999999999999998888776655321 1222233333344444
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 470 FMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 470 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
......+++|..|++.||...+..+....+|..++ .+.+...+
T Consensus 160 ~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~ 202 (513)
T KOG0254|consen 160 SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTS 202 (513)
T ss_pred hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhc
Confidence 44445899999999999999999998888877777 44444443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.6e-05 Score=55.11 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=57.5
Q ss_pred HHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 008417 361 LFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFG 429 (566)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~ 429 (566)
.+.+++........++...+.++.|+++.++|++..+..+..+++.+++|.++||+++++.......++
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 445555555566777888888899999999999999999999999999999999999998877655443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.1e-05 Score=74.83 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=93.6
Q ss_pred hHhHHHHHHHHHHHHHHHhh--cch------HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHh
Q 008417 203 SYLVLSGLLGALSWSLMATI--VES------KYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSS 274 (566)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~--~~~------~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 274 (566)
+.++++.++..+|.+++.+. ... .+.++++.++.++|.|..-+....+.+|.+++++++++...+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 46778888888888884442 222 2568888999999999999999999999998876788899999999999
Q ss_pred HHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHhheeec
Q 008417 275 AFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVK 316 (566)
Q Consensus 275 ~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~ 316 (566)
++|.+++..+.+++-+++||.+.|.+.++..+++++..+.-+
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999988888666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=53.78 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=65.5
Q ss_pred HhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhhcc-hhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcc
Q 008417 146 GVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLIKP-LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVE 224 (566)
Q Consensus 146 ~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~-~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~ 224 (566)
|+..+...++.|.+.++.++|.++.|++.+...+||.++- ....+.++ .++++.+..+.+...+..+.+++ .+
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ma~-~~ 78 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-----SRPRRLLRAGLLLTVLSTAAMAL-TH 78 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 4556777778888888899999999999999999999965 55888888 78889999999999999999998 66
Q ss_pred hHHH
Q 008417 225 SKYS 228 (566)
Q Consensus 225 ~~~~ 228 (566)
+.+.
T Consensus 79 ~~~~ 82 (85)
T PF06779_consen 79 SFWL 82 (85)
T ss_pred chHH
Confidence 6654
|
Note that many members are hypothetical proteins. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.1e-06 Score=90.13 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=82.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhh
Q 008417 389 EFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQA 468 (566)
Q Consensus 389 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 468 (566)
...++..+...++.++|.++.|.+.||+|||+.+.++.++..++.++..+.....+ ...+...-++.| ++.+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~R~~~G-------~~~g 117 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNN-FWMLLIGRFLIG-------FGIG 117 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-------cccc
Confidence 45677888999999999999999999999999999998888888776655441101 111111123344 3333
Q ss_pred hhHH-HHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHH
Q 008417 469 SFMP-VLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGL 511 (566)
Q Consensus 469 ~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l 511 (566)
...+ ...++.|..|+++|+...++.+....+|..++..+.-.+
T Consensus 118 ~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 118 GAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 3333 338899999999999999988888888877777665444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=52.08 Aligned_cols=58 Identities=31% Similarity=0.663 Sum_probs=45.8
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHH
Q 008417 148 LGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLL 211 (566)
Q Consensus 148 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~ 211 (566)
.+...+.++.++++ .|++..++|.+.++..+...+ .|++|.++|| ++|++.++....+
T Consensus 16 ~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-----~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-----FGKRKVILLGSLF 74 (77)
T ss_pred HHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCccHHHHHHHHH
Confidence 35567778888876 799999999999888665555 7899999999 7777777665544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0024 Score=62.13 Aligned_cols=127 Identities=15% Similarity=-0.004 Sum_probs=84.4
Q ss_pred ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccch--hhhhHHH
Q 008417 383 ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEW--FAIGDSL 460 (566)
Q Consensus 383 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~ 460 (566)
.+| +...+-+...++.+..+...+.+.|+.||+|-|..+.++.++..++..+=.+...+.-. ...+ +......
T Consensus 74 ~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~----~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 74 FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVP----PLFRRPLTHTGQS 148 (480)
T ss_pred Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcccc----ccchhhhhHHhHH
Confidence 356 66677788899999999999999999999999999999999888876654443222100 0001 1111111
Q ss_pred HHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhc
Q 008417 461 ILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 461 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~ 515 (566)
+.. ..+..++... -...-.+++++|+++..+......+|.+++.++...+...-
T Consensus 149 iaa-~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 149 IAA-AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHH-HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 111 2222222222 22334578999999999988888899999888888877654
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0024 Score=53.79 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=78.1
Q ss_pred cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccc
Q 008417 184 KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVS 263 (566)
Q Consensus 184 ~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 263 (566)
.++...+.++ .|.|+.++++.+...+-..... -++.+.++..-++.|++.+..++....++.+.. +++.+
T Consensus 54 ~l~~P~iv~~-----lg~K~sm~lg~~~y~~y~~~~~--~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s---~~~~~ 123 (156)
T PF05978_consen 54 CLFAPSIVNK-----LGPKWSMILGSLGYAIYIASFF--YPNSYTLYPASALLGFGAALLWTAQGTYLTSYS---TEETI 123 (156)
T ss_pred HHhHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC---CHHHH
Confidence 4555778899 8999999999999887655543 677889999999999999999999999999988 55566
Q ss_pred cchhHHHHHHhHHHHHHHHHHHhHhh
Q 008417 264 GSLQSLCWGSSAFGGIVSSYFSGSMV 289 (566)
Q Consensus 264 ~~~~~~~~~~~~~g~~~g~~~~~~l~ 289 (566)
++-.++.++....+.++|.++.-++.
T Consensus 124 ~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 124 GRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888877888888877765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0069 Score=64.08 Aligned_cols=136 Identities=14% Similarity=0.024 Sum_probs=87.6
Q ss_pred HHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhh
Q 008417 377 FYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN-VPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFA 455 (566)
Q Consensus 377 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (566)
..++.+.+|++...+..++.......-+..++++++.|+ +|+++.+.++.++..++.+++.+...+....... ...
T Consensus 11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~---~~~ 87 (654)
T TIGR00926 11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLH---DLL 87 (654)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchH---HHH
Confidence 344455689988888877777666666777888888886 5889999988888877766554422111000000 011
Q ss_pred hhHHHHHHHhhhhhhHHHH-HHHHhhCCCC---chHHHHHHHHHHHhhhhhhHhHHHHHHHHhc
Q 008417 456 IGDSLILTVLSQASFMPVL-VLAARLCPEG---MEATLFATLMSISNGGSVLGGLLGAGLTQLF 515 (566)
Q Consensus 456 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~ 515 (566)
....+.....+....-|.. +...+..+++ .+-+.+.++....++|+.+++.+.+++.+..
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112222334444444555 7777777643 3667888888889999999999999887654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0047 Score=62.36 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHH
Q 008417 397 VTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVL 476 (566)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 476 (566)
..++..++.+...|.++||+|||..+....+...+..+.+.+.. |.. +.. .-..| .....+....++
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~---~~~-~~l~g-------~~~~~~s~~~a~ 136 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWF---FLL-LGLSG-------GFSAIFSVGFAY 136 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHH---hhh-ccccc-------chhhhhhhhhhh
Confidence 34678888899999999999999988877666655544443322 100 000 01111 222333334478
Q ss_pred HHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHHHHHhhhhhh-hccCCCCCC
Q 008417 477 AARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPL-IGLLPQDSP 551 (566)
Q Consensus 477 ~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~ 551 (566)
+++....+.|...+|+.+.....+..++|.+++.+.+..|+.. .+.+..+..++.+++ ...+||...
T Consensus 137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~--------~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIAL--------VFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchH--------HHHHHHHHHHHHHHHHhhccccccC
Confidence 8999999999999999999999999999999999999877644 344444444444333 234565543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.29 E-value=4.7e-05 Score=78.55 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=0.9
Q ss_pred hHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccc---------
Q 008417 376 MFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRK--------- 446 (566)
Q Consensus 376 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 446 (566)
......+.++++..+.|++.+..-++.++..++..++..|..|-|.+.++.++++++.+++.+.+.....+
T Consensus 25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~ 104 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSN 104 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccc
Confidence 34455567899999999999999999999999999999998888889999999999888776542211000
Q ss_pred --------cc----------------------cc-cchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 008417 447 --------FG----------------------IS-DEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMS 495 (566)
Q Consensus 447 --------~~----------------------~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 495 (566)
.. .. ...+++...++.++.....+.-..+|+-|.++++..+...|+..+
T Consensus 105 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~ 184 (539)
T PF03137_consen 105 GNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYA 184 (539)
T ss_dssp -----------------------------------------------SSS------------------------------
T ss_pred cccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhH
Confidence 00 00 001222223333322222332233899999999999999999999
Q ss_pred HHhhhhhhHhHHHHHHHHh
Q 008417 496 ISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 496 ~~~lg~~i~~~~~g~l~~~ 514 (566)
+..+|-++|-.+++.+.+.
T Consensus 185 ~~~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 185 MSILGPALGFLLGSFCLRI 203 (539)
T ss_dssp -------------------
T ss_pred HhhccHHHHHHHHHHHHhc
Confidence 9999999999998888765
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.011 Score=56.01 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHh-hhhhhhcchhhhcccccCcCCCCCchHhHHHHHHHHH
Q 008417 137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFS-SLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLGAL 214 (566)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~ 214 (566)
.+.+.|+..... ..-...+..++.+-.|-|...++....+- .....++++.|...|+ ..|++++....++--+
T Consensus 31 ~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg-----~sr~Kvi~~~L~lqNl 105 (503)
T KOG2601|consen 31 FLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDG-----MSRVKVIQTWLLLQNL 105 (503)
T ss_pred hhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcc-----hhHHHHHHHHHhhccH
Confidence 355566665554 44455566666554443433333332222 3334558999999999 9999998877654332
Q ss_pred HHHH------HHhhc-----chHHHHHHHHHHHHHHHHhHhhhhhh----hhhhh----hcccCcccccchhHHHHHHhH
Q 008417 215 SWSL------MATIV-----ESKYSAALSILLGSLSVAFSDVVVDS----MVVER----ARGESQSVSGSLQSLCWGSSA 275 (566)
Q Consensus 215 ~~~~------~~~~~-----~~~~~l~~~r~l~g~~~~~~~~~~~~----~i~~~----~~~~~~~~~~~~~~~~~~~~~ 275 (566)
+.+. ..+.. .+..++..+.++.....+.......+ .--|| ...+++.......+.....-.
T Consensus 106 Sv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq 185 (503)
T KOG2601|consen 106 SVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQ 185 (503)
T ss_pred HHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhh
Confidence 2222 22212 24555555555554444432222222 12222 244555555555666666666
Q ss_pred HHHHHHHHHHhHhhcccChHHHHHHHHHHHHH
Q 008417 276 FGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 276 ~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~ 307 (566)
...++.|.+.|.+....+-|..-.+.++..++
T Consensus 186 ~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 186 STNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred hhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 77889999999999888888755555555444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.007 Score=61.25 Aligned_cols=138 Identities=20% Similarity=0.265 Sum_probs=81.3
Q ss_pred hhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCC----cchh-hHHHHHHHHHHHhHHHHhhhcccccccc
Q 008417 375 AMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVP----LRKI-FLANTIFGTALGMTQVFLVTGLNRKFGI 449 (566)
Q Consensus 375 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (566)
...+++.+++|+++.+...+.....+...+ -++.|.++|-+. |||. ++++.++..+..+.+......... .
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s-~-- 86 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS-A-- 86 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch-h--
Confidence 345666778999999988877766655544 467799999873 4444 445555554443333332221111 0
Q ss_pred ccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCC--CCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 450 SDEWFAIGDSLILTVLSQASFMPVLVLAARLCP--EGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 450 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.......++..+.........-+.+.|... ++.+|...+....+..+|+.++..++|.+.+..+.+.
T Consensus 87 ---~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~ 155 (433)
T PF03092_consen 87 ---AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQG 155 (433)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeE
Confidence 111111111122222222222255556542 2337888888999999999999999999999877665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.021 Score=51.76 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhHh---h--cccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHH
Q 008417 275 AFGGIVSSYFSGSM---V--DAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWE 349 (566)
Q Consensus 275 ~~g~~~g~~~~~~l---~--~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (566)
++|.++.-+.--.- . -.-.|++++.+.+++.++-++...++- ++-+...+++++++.+ ...+......+
T Consensus 16 ~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifG-k~fd~~~~~~k~~k~~-----~~~~~~~s~~~ 89 (267)
T PF07672_consen 16 NIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFG-KNFDIYSPKEKQEKEN-----STLSKKPSYKS 89 (267)
T ss_pred hhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccCccccccccc-----ccccccchHHH
Confidence 67766654332111 1 123599999999988877444443332 2111111110000000 01112245667
Q ss_pred HhcccchhHHHHHHHHHhhcccch--hhhHHHHhhcc--CC----Chh----hhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008417 350 AVKQPNVFLPTLFVFLWQATPHSD--SAMFYFTTNEL--GF----TPE----FLGRVKFVTSVASLLGVGLYNGFLKNVP 417 (566)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--g~----~~~----~~g~~~~~~~~~~~~~~~~~~~l~~r~g 417 (566)
.+|++..|...+....+....... ......+.... +. +.. .......+...+.++|.+..|.+.+..-
T Consensus 90 ~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~ 169 (267)
T PF07672_consen 90 ILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNY 169 (267)
T ss_pred HHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHHhhhceeeccchhhhh
Confidence 899999888875554443322111 11111111111 11 111 1122234445555566677777776554
Q ss_pred cchhhHHH
Q 008417 418 LRKIFLAN 425 (566)
Q Consensus 418 ~~~~~~~~ 425 (566)
+||..+..
T Consensus 170 kRk~fi~~ 177 (267)
T PF07672_consen 170 KRKPFIHF 177 (267)
T ss_pred hhhhHHHH
Confidence 45544433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.049 Score=55.10 Aligned_cols=127 Identities=10% Similarity=0.036 Sum_probs=79.1
Q ss_pred ChhhhhHHHHHHHHHHHHH-HHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccccc------------------
Q 008417 387 TPEFLGRVKFVTSVASLLG-VGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKF------------------ 447 (566)
Q Consensus 387 ~~~~~g~~~~~~~~~~~~~-~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 447 (566)
+.+...++.....+.+.+. .++.+++++|+++++++.+.........+++.+...+.....
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3356666766655554544 888999999999999877766655555554433322111000
Q ss_pred ---ccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 448 ---GISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 448 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
.+...|......+...+.+.....-.. .+.+|.+..++..+.+++.....++|..+++.+..++.+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111222222333333332233 789999999999999999999999999999988888775
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0036 Score=65.41 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=123.5
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcccc--------
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNR-------- 445 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 445 (566)
.......-+.++++..+.|++...+-++..+...+..+...|..|-+++-++.++++++.++..+...-...
T Consensus 117 ~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~ 196 (735)
T KOG3626|consen 117 NSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI 196 (735)
T ss_pred hhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence 333444455679999999999999999999999999999999999999999999999998887654211000
Q ss_pred ------c-----------------------c---ccc-cch-hhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHH
Q 008417 446 ------K-----------------------F---GIS-DEW-FAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFA 491 (566)
Q Consensus 446 ------~-----------------------~---~~~-~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 491 (566)
. . ... ..+ ++++..++.++.....+....+|+-|.+.+++.....|
T Consensus 197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG 276 (735)
T ss_pred hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence 0 0 000 011 22233333333333333333388999999999999999
Q ss_pred HHHHHHhhhhhhHhHHHHHHHHhcCCC--------C--ccc-hhhHHHHHHHHHHHhhhhhhhccCCCCCCCC
Q 008417 492 TLMSISNGGSVLGGLLGAGLTQLFGVT--------K--DSF-DNLATLIILCNLSSLLPLPLIGLLPQDSPDS 553 (566)
Q Consensus 492 ~~~~~~~lg~~i~~~~~g~l~~~~g~~--------~--~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 553 (566)
+..++..+|=++|-++++.+.+.+.-. . ..| ..+|+-+++++.+.+++.+.+++.|++.++.
T Consensus 277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 999999999999999999888764211 1 112 3355667777777777777777778766543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.059 Score=45.44 Aligned_cols=107 Identities=7% Similarity=-0.037 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHH
Q 008417 396 FVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLV 475 (566)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 475 (566)
++......+..++.+.+.+++|.|+.++++.+...+-...... ... +..+...++.++..+..|...-.
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~~~----------~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-PNS----------YTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhH----------HHHHHHHHHHhhhhHHhhHhhhH
Confidence 5556666777788899999999999999988877654333221 111 23344445555556666665558
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 476 LAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 476 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
++.+...++.+++..|+.-.+.+.+..+|..+.-.+.+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999988888888888777655543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.23 Score=50.08 Aligned_cols=119 Identities=12% Similarity=-0.039 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHHHHhHHHHhhhcc--ccccccccchhhhhHHHHHHHhhhh
Q 008417 392 GRVKFVTSVASLLGVGLYNGFLKNVPLR-KIFLANTIFGTALGMTQVFLVTGL--NRKFGISDEWFAIGDSLILTVLSQA 468 (566)
Q Consensus 392 g~~~~~~~~~~~~~~~~~~~l~~r~g~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~ 468 (566)
-.++..+.++-++|..+..+..- -+++ +.+.+..+.-.+..-++.+..... .....+...++.+...++.++..+.
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 34456788899999886654321 1212 133333332222222222211111 1001122223333334444444433
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHH
Q 008417 469 SFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGL 511 (566)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l 511 (566)
.....+.+..+.+++++|-.+..+...+..+|-.+|..++-.+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335666777777787777777777777777777664433
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.23 Score=48.51 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhhhhh
Q 008417 226 KYSAALSILLGSLSVAFSDVVVDSMVVERA 255 (566)
Q Consensus 226 ~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~ 255 (566)
+...++.-.+.+++.+.......+..++.-
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P 146 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFP 146 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcCC
Confidence 445566666777777766655555555543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.022 Score=55.91 Aligned_cols=142 Identities=14% Similarity=0.029 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHH--HhhcCCCHHHHHHHHHHhhhhhhhcchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYL--KDDLHLDPAETAVISGFSSLPWLIKPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~g~s~~~~g~~~s~~~~~~~~~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
++.+++.|+++.+. +..+.+-+ ..++.-..++..+...++.+|-.++=-...+. | ++|.+++.+...+.
T Consensus 249 miPL~lVY~aEY~I---nqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~-r-----ir~lwils~LQ~~n 319 (402)
T PF02487_consen 249 MIPLFLVYFAEYFI---NQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF-R-----IRRLWILSLLQVIN 319 (402)
T ss_pred HHHHHHHHHHHHHH---HhchHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhhcceeee-e-----hhhHHHHHHHHHHH
Confidence 44566677666554 22221111 12233345666666666666654421111111 3 43433333333333
Q ss_pred HHHHHHHHhh--cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHh
Q 008417 213 ALSWSLMATI--VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM 288 (566)
Q Consensus 213 ~~~~~~~~~~--~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 288 (566)
.+.+++-+.. .++.|.+++..+..|+.+|..++.....+.|-. ++++|-..++....+-++|..++.+++-.+
T Consensus 320 l~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~---~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 320 LVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEV---PPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333322221 678899999999999999999998888888876 445566666767666688888888777654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0062 Score=56.02 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=70.7
Q ss_pred cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccc
Q 008417 184 KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVS 263 (566)
Q Consensus 184 ~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 263 (566)
....-...||++ +|.|. .+..++.+.++++.++ +++.++-+.+..+..++.|...+..-++-+.+ ++.
T Consensus 79 Kl~~Pff~~rfp---f~~Ri--~~~v~~sa~s~~lVaf-s~s~~~sL~GV~~aSissGlGEiTFL~lss~Y----~~~-- 146 (409)
T KOG3880|consen 79 KLTAPFFIHRFP---FGFRI--ALVVLLSALSFFLVAF-SNSVPMSLLGVVFASISSGLGEITFLALSSRY----PSI-- 146 (409)
T ss_pred HHhchhhhhhcc---cchHH--HHHHHHHhcceEEEEe-ccchhHHHhhhhhhhhcCCcceeehhhhhccC----CCc--
Confidence 334455667722 45554 3445566777777787 88899888888888888887655444432222 222
Q ss_pred cchhHHHHHHhHHHHHHHHHHHhHhhc--ccChHHHHHHHHHHHHH-HHHhheeecccc
Q 008417 264 GSLQSLCWGSSAFGGIVSSYFSGSMVD--AYGVRFVFGVTALLPLI-TSGVAVLVKEQQ 319 (566)
Q Consensus 264 ~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~ 319 (566)
.+.+ +..+...++++|..--..+.+ .+.-|.+.+++..+.++ +...++.+++++
T Consensus 147 -~i~~-WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pe 203 (409)
T KOG3880|consen 147 -VIAG-WSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPE 203 (409)
T ss_pred -eecc-ccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence 2222 222223444555554444544 35678888888877776 444445555443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=43.21 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=57.5
Q ss_pred hhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh
Q 008417 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV 440 (566)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 440 (566)
..+..+...++.+++..+.|++.+.+.++.++|.+...++.++..+++.+..+.+...+..+.+.+..
T Consensus 11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888899999999999999999999999999999999988878888888887777766665443
|
Note that many members are hypothetical proteins. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.79 Score=43.18 Aligned_cols=227 Identities=8% Similarity=0.001 Sum_probs=121.3
Q ss_pred hhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcc----
Q 008417 186 LYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQS---- 261 (566)
Q Consensus 186 ~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~---- 261 (566)
+.+.+..+ +|-|..+.++..........-. -+.+..++-.-...|++.+.....-..+++++.+.....
T Consensus 77 ~~~~~Ir~-----~g~K~tm~lav~~Y~lyiA~Nl--~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q 149 (390)
T KOG3097|consen 77 FMPLLIRF-----LGTKWTMVLAVFPYALYIAANL--EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQ 149 (390)
T ss_pred HHHHHHHH-----HhhHHHHHHHHHHHHHHHHhhc--chhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhh
Confidence 34577777 8899999988877766543322 466778888889999999888777777777666432111
Q ss_pred ----cccchhHHHHHHhHHHHHHHHHHHhHhh----ccc------------C------------------------hHHH
Q 008417 262 ----VSGSLQSLCWGSSAFGGIVSSYFSGSMV----DAY------------G------------------------VRFV 297 (566)
Q Consensus 262 ----~~~~~~~~~~~~~~~g~~~g~~~~~~l~----~~~------------g------------------------wr~~ 297 (566)
.....++.+++....+..+|..++..+. ... | -..+
T Consensus 150 ~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~~~~~~~~~sn~t~~~~CG~~f~~~g~~a~~nlt~p~~~~~lvls~i 229 (390)
T KOG3097|consen 150 AGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTLFLHGALSGSNLTFSVECGANFCGSGDKAEGNLTLPPSYVILVLSLI 229 (390)
T ss_pred ccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceeeeecccccCCccccccCCccCCCCCceEEeeHH
Confidence 1145556666555566666655554432 110 0 0122
Q ss_pred HHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchhhhH
Q 008417 298 FGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMF 377 (566)
Q Consensus 298 f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (566)
|+-+.++..+ ++.+++..-++..++.-++ ....+.+.-..+.+++++....+-+....+.-..+...-+
T Consensus 230 ~L~c~via~~--~~~~~~~~l~r~~~~r~~~---------~~~l~i~~l~~~~l~~~r~~llvP~tif~GleqaF~~~~f 298 (390)
T KOG3097|consen 230 FLPCMVIAVL--IMLFFLGALKRYGEKRLAS---------VSGLNIFQLTFKHLRDIRLRLLVPLTIFSGLEQAFLCADF 298 (390)
T ss_pred HHHHHHHHHH--HHHHHHHHHhhhhhhhhhc---------ccccchHHHHHHHhcCcceeeeehhhhhhHHHHHHHHhhh
Confidence 3322222222 1122221111110100000 0111233334455666665444422222221111111111
Q ss_pred HHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 008417 378 YFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGT 430 (566)
Q Consensus 378 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~ 430 (566)
.--....++.-...|..+..++++..+.+.+.|.+.+++||......+.+.-.
T Consensus 299 Tk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l 351 (390)
T KOG3097|consen 299 TKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHL 351 (390)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 10001125566788999999999988899999999999998887776655543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.22 Score=51.59 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=73.6
Q ss_pred HHHhhcCCCHHHHHHHHHHhhhhhhhcc-hhhhcccccCcCCCCCchHhHHHHHHHH---HHHHHHHhhcchH-----HH
Q 008417 158 YLKDDLHLDPAETAVISGFSSLPWLIKP-LYGFISDSLPLFGYRRRSYLVLSGLLGA---LSWSLMATIVESK-----YS 228 (566)
Q Consensus 158 ~l~~~~g~s~~~~g~~~s~~~~~~~~~~-~~G~lsDr~~~~G~grr~~~~~~~~~~~---~~~~~~~~~~~~~-----~~ 228 (566)
.+...+|.+..+.+.+.++++++..++- +.|++.++ ..++...+-..+.. ++..++.. ...+ ..
T Consensus 40 ~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~------~~~~~~~~e~~i~l~~~~~~~ll~~-~~~~~~~~~~~ 112 (521)
T PRK03612 40 LASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD------AAAGFVAVELLLALLGGLSALILYA-AFAFQGLSRLL 112 (521)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3344578899999999999999988854 44666543 22222222211111 11111111 1111 11
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh-cccChHHHHHHHHHHHHH
Q 008417 229 AALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV-DAYGVRFVFGVTALLPLI 307 (566)
Q Consensus 229 l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~gwr~~f~i~~i~~~~ 307 (566)
++...++.++..|...|....+..+. ..++.+...|..++...+|.++|.++.+++. ..+|-....++.+.+.++
T Consensus 113 ~~~~~~~~~~l~G~~~Pl~~~~~~~~----~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~ 188 (521)
T PRK03612 113 LYVLVLLIGLLIGMEIPLLMRILQRI----RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLL 188 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 23334455555565555444433322 2223345566677777899999999988765 467755444444444433
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0027 Score=56.68 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=40.7
Q ss_pred HHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhccccc------CcCCCCCchHhHHHHHH
Q 008417 140 MVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSL------PLFGYRRRSYLVLSGLL 211 (566)
Q Consensus 140 ~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~------~~~G~grr~~~~~~~~~ 211 (566)
...+.+.+. +.-...+..++++ .|.++.....+.-+..+.-++ .|+.|..+|.- .|+| +|+.+-.++.++
T Consensus 24 vGHmlNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G-~~~~wh~~gt~l 101 (412)
T KOG4830|consen 24 VGHMLNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG-RRMSWHLIGTVL 101 (412)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc-ceeeeeecccEE
Confidence 334444443 2333344556655 688887777665555555555 56778666641 3567 666666666544
Q ss_pred H
Q 008417 212 G 212 (566)
Q Consensus 212 ~ 212 (566)
.
T Consensus 102 V 102 (412)
T KOG4830|consen 102 V 102 (412)
T ss_pred E
Confidence 3
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.42 Score=45.40 Aligned_cols=129 Identities=15% Similarity=0.103 Sum_probs=79.4
Q ss_pred HHHHhhccCCCh--hhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchh
Q 008417 377 FYFTTNELGFTP--EFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWF 454 (566)
Q Consensus 377 ~~~~~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (566)
...+....+.+. ...++......+...++.++.|.+.||.|+|+.+..+.....+..+...+... . . ...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~------~~~ 96 (338)
T COG0477 25 LPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-V-G------LAL 96 (338)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-c-h------HHH
Confidence 333334444444 46788888888888888899999999999887766666543333222222211 0 0 011
Q ss_pred hhhHHHHHHHhhhhhhHHHH-HHHHhhCCC-CchHHHHHHHHH-HHhhhhhhHhHHHHHHHHh
Q 008417 455 AIGDSLILTVLSQASFMPVL-VLAARLCPE-GMEATLFATLMS-ISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 455 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~-~~~lg~~i~~~~~g~l~~~ 514 (566)
........+ .......+.. .++.+..|+ +.++...+.... ...++..+++.+++.+...
T Consensus 97 ~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 97 LLILRLLQG-LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122 2233344444 888888887 678888888887 5777888888888877766
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.89 Score=44.93 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcccchhhhHHHHhhc--cCCChhhhhH-HHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhH
Q 008417 359 PTLFVFLWQATPHSDSAMFYFTTNE--LGFTPEFLGR-VKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT 435 (566)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 435 (566)
++++.|+..+- -..++...|... .|++..+..- ++-...-..++..++...+.|..+.|.+++++.+...+..++
T Consensus 10 lc~~gf~~~fr--PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~l 87 (412)
T PF01770_consen 10 LCLFGFFKEFR--PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLL 87 (412)
T ss_pred HHHHHHHHhcC--CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33444444332 234444434333 7888877653 333344455566677778899999999888887776666554
Q ss_pred HHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 436 QVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
+.+...-+. .-..-+..| ...+.-...++++-..+|+++--++.+...+...+|..++..++-.+...
T Consensus 88 ll~~~sv~~----mq~~q~~yg-------~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 88 LLFGTSVLA----MQLMQFFYG-------LATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred HHHHCcHHH----HHHHHHHHH-------HHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433221110 000012222 33333333336676777888888888888888888888888888777664
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.029 Score=54.93 Aligned_cols=147 Identities=17% Similarity=0.081 Sum_probs=93.4
Q ss_pred HHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHH-HHHhHH
Q 008417 362 FVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN----VPLRKIFLANTIFGT-ALGMTQ 436 (566)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r----~g~~~~~~~~~~~~~-~~~~~~ 436 (566)
..+...+.+..-..+...+.+.+|.+....+.+....-+.+++..++.|..+|| +||||..+....+.. ++.+++
T Consensus 40 ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Li 119 (498)
T KOG0637|consen 40 IAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLI 119 (498)
T ss_pred HHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhh
Confidence 333344444444556677788999999999999988888899999999999996 688887665544433 333322
Q ss_pred HHhhh-c----ccccc-c--cccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHH-HHHHHHHHHhhhhhhHhHH
Q 008417 437 VFLVT-G----LNRKF-G--ISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEAT-LFATLMSISNGGSVLGGLL 507 (566)
Q Consensus 437 ~~~~~-~----~~~~~-~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~lg~~i~~~~ 507 (566)
..... . .+... . .....+.+| ..+.-+.......|.-+++.++..++.+.+ +++.+..+..+|+.+|-.+
T Consensus 120 g~aaDig~~lgd~~~~~~~~rai~~~~lg-~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~ 198 (498)
T KOG0637|consen 120 GYAADIGLLLGDNERKPVKPRAIVLFILG-FWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYAL 198 (498)
T ss_pred hhHhhhhHHhcCCcccccchHHHHHHHHH-hHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeec
Confidence 22111 0 00000 0 000012222 233344455666777789999987777666 8899988999998888776
Q ss_pred HH
Q 008417 508 GA 509 (566)
Q Consensus 508 ~g 509 (566)
++
T Consensus 199 g~ 200 (498)
T KOG0637|consen 199 GS 200 (498)
T ss_pred cc
Confidence 65
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.4 Score=48.12 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=89.1
Q ss_pred CCcchHHHHHHHHHHHhh-hhhhhhHHHHHH--hhcCCCHHHHHHHHHHh-hhhhhh-cchhhhcccccCcCCCCCchHh
Q 008417 131 LSPDNFAVAMVYFVQGVL-GLARLAVNFYLK--DDLHLDPAETAVISGFS-SLPWLI-KPLYGFISDSLPLFGYRRRSYL 205 (566)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~--~~~g~s~~~~g~~~s~~-~~~~~~-~~~~G~lsDr~~~~G~grr~~~ 205 (566)
.+++++.+...++..|+. ++.....|..+. ...+.+...+-.+.++. .++..+ +.+++.+++|.++ +||++.+
T Consensus 238 ~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~--fg~~~~~ 315 (461)
T KOG3098|consen 238 KTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG--FGRKPTV 315 (461)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh--cccCcch
Confidence 355566666677777775 333333332221 12233333333222222 444444 5677888877544 4588888
Q ss_pred HHHHHHHHHHHHHHHhhc-----------------chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhH
Q 008417 206 VLSGLLGALSWSLMATIV-----------------ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQS 268 (566)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 268 (566)
.++.++..+..++.-... ++....++.-++.|++-+........++.+..+ +++.+...++.
T Consensus 316 ~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~k 394 (461)
T KOG3098|consen 316 LIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFK 394 (461)
T ss_pred hHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHH
Confidence 888888777766655431 134567888899999999999999999999983 34555555555
Q ss_pred HHHHHhHHHHHHHHHHH
Q 008417 269 LCWGSSAFGGIVSSYFS 285 (566)
Q Consensus 269 ~~~~~~~~g~~~g~~~~ 285 (566)
... .++..++-...
T Consensus 395 fyq---~~~s~v~~f~~ 408 (461)
T KOG3098|consen 395 FYQ---SVASCVAFFFS 408 (461)
T ss_pred HHH---HHHHHHHhhhh
Confidence 555 45554444333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.17 Score=46.02 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=43.5
Q ss_pred hhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHH
Q 008417 374 SAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTAL 432 (566)
Q Consensus 374 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~ 432 (566)
.++.|+..+.+|+...++|.++.......++...+.|-+.||.|||+.-..-++...++
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs 115 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS 115 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH
Confidence 34445555668889999999998877777788888899999999998655444444333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.1 Score=44.87 Aligned_cols=129 Identities=16% Similarity=0.024 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHH----HHhHHHHhhhcccc-----ccccccchhhhhHHH
Q 008417 390 FLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA----LGMTQVFLVTGLNR-----KFGISDEWFAIGDSL 460 (566)
Q Consensus 390 ~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~ 460 (566)
..+.....-.+..++.+...|.+.||..|.+.+....+..-+ ++..++........ ...............
T Consensus 39 ~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 118 (432)
T PF06963_consen 39 PVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA 118 (432)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH
Confidence 334444555667777778889999999988876655444332 22222221111110 000000001111111
Q ss_pred HHHHhhhhhhHHHH-HHHHhhC--CCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 461 ILTVLSQASFMPVL-VLAARLC--PEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 461 ~~~~~~~~~~~~~~-~~~~~~~--~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
+......+....+- -++..+. +++.....++...-+-.+...++|.+.|.+.+..+..
T Consensus 119 i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~ 179 (432)
T PF06963_consen 119 IERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPV 179 (432)
T ss_pred HHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence 11111112222111 2233333 3455667777777777788999999999999876643
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.86 Score=47.25 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=65.9
Q ss_pred ccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhH--HHHhhhccccccccccchhhhhHHH
Q 008417 383 ELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMT--QVFLVTGLNRKFGISDEWFAIGDSL 460 (566)
Q Consensus 383 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~ 460 (566)
.+|-+....+.+.+++.++..+|+.+.+++.++.. ++...+-..+..++.+. +......+.. ..........+
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~-~~~~~~e~~i~l~~~~~~~ll~~~~~~~~----~~~~~~~~~~~ 118 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAA-AGFVAVELLLALLGGLSALILYAAFAFQG----LSRLLLYVLVL 118 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 46777778888888888888888888887753322 22111111111111111 1111111100 00011111222
Q ss_pred HHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH-hcCCCC
Q 008417 461 ILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ-LFGVTK 519 (566)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~-~~g~~~ 519 (566)
+..++.++. .|..+-+......+..+...|-...+..+|+.+|+++.+++.- .+|...
T Consensus 119 ~~~~l~G~~-~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~ 177 (521)
T PRK03612 119 LIGLLIGME-IPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIR 177 (521)
T ss_pred HHHHHHHHH-HHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHH
Confidence 222233333 5544222222222345677788888899999999999887654 677643
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.6 Score=42.17 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=74.3
Q ss_pred ChhhhhHHHHHH-HHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhcc------cccc---------c--
Q 008417 387 TPEFLGRVKFVT-SVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGL------NRKF---------G-- 448 (566)
Q Consensus 387 ~~~~~g~~~~~~-~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---------~-- 448 (566)
+++....+-... .-+.++...+..++.+++++.++..+..........++.+...+. +... +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 455555554432 235566678889999999999877665555444444433321111 0000 0
Q ss_pred ----cccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 008417 449 ----ISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQ 513 (566)
Q Consensus 449 ----~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~ 513 (566)
+...|......+.....+.....-.. .+.++.+..++..+.+++.....++|..+++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111122222222222223 788899999999999999999999999998888888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.75 E-value=3.1 Score=41.76 Aligned_cols=129 Identities=13% Similarity=0.085 Sum_probs=77.9
Q ss_pred CChhhhhHHHHHHHH-HHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc------cc--------------
Q 008417 386 FTPEFLGRVKFVTSV-ASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG------LN-------------- 444 (566)
Q Consensus 386 ~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------------- 444 (566)
.+++....+-....+ ++++..++..++.++..+.++..+.........+++.+...+ .+
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 456666666666555 777888899999999998888766555555444444332221 00
Q ss_pred ccc--ccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 445 RKF--GISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 445 ~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
..+ .+...|-.....+.....+.....-.. ....|.+..++..+.+++.+...+++..++..+..++.+.
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000 001112111112222222222222223 6788889889999999999999998888888887777764
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.8 Score=38.34 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=57.1
Q ss_pred Hhhhhhhhcchh-hhcccccCcCCCCCchHhHHH----HHHHHHHHHHHHhhcc----hHHHHHHHHHHHHHHHHhHhhh
Q 008417 176 FSSLPWLIKPLY-GFISDSLPLFGYRRRSYLVLS----GLLGALSWSLMATIVE----SKYSAALSILLGSLSVAFSDVV 246 (566)
Q Consensus 176 ~~~~~~~~~~~~-G~lsDr~~~~G~grr~~~~~~----~~~~~~~~~~~~~~~~----~~~~l~~~r~l~g~~~~~~~~~ 246 (566)
++..++.++|+. |++.-. -+.||+++... .++..+..+....... +...++++-++.|++.-...++
T Consensus 149 ~fv~g~~~G~~~ig~~nkt----~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V 224 (267)
T PF07672_consen 149 LFVAGYFLGPFTIGLWNKT----NYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV 224 (267)
T ss_pred HHHHHHhhhceeeccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345566667654 777663 16788776632 3334443333212121 2445566666666655443332
Q ss_pred hhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHH
Q 008417 247 VDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS 285 (566)
Q Consensus 247 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 285 (566)
. -.+..-+++.++++.+..+|+.++.+.+...+.-++.
T Consensus 225 i-L~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~ 262 (267)
T PF07672_consen 225 I-LNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIIL 262 (267)
T ss_pred H-hcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHH
Confidence 2 2344455566778888899988865555444444443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.33 E-value=4.5 Score=39.28 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhh-----cCCcchhhHH
Q 008417 356 VFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLK-----NVPLRKIFLA 424 (566)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~-----r~g~~~~~~~ 424 (566)
++.++....+.+....... ..+++.+.-|.|-+..+.......=- ---+++..++| |+||||..++
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceee
Confidence 4444444555555555444 55666666777766666554332111 11234444555 9999986554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.1 Score=44.61 Aligned_cols=115 Identities=20% Similarity=0.132 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCC---chHHHHHHHHH
Q 008417 420 KIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEG---MEATLFATLMS 495 (566)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~g~~~g~~~~ 495 (566)
|.+.++.++..++.+++.+........-+.....+.++ +....++.+..=|.. .+..+.++++ ++.+.+..+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~g--L~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~ 79 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIG--LALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYW 79 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHH--HHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHH--HHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 45667777777776665444333221001111112222 222335566666666 8888888755 46677888899
Q ss_pred HHhhhhhhHhHHHHHHHHhcCCCCccchhhHHHHHHHHHHHhhhhhhhc
Q 008417 496 ISNGGSVLGGLLGAGLTQLFGVTKDSFDNLATLIILCNLSSLLPLPLIG 544 (566)
Q Consensus 496 ~~~lg~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 544 (566)
..++|..++..+.+++.+..|+. +.+.++.++.+++++.+.
T Consensus 80 ~in~G~~~~~~~~~~i~~~~~~~--------~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 80 GINIGSLFSPTLVPYIQQNYGWF--------LGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHCCCHHHHCS-HH--------HHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhcccchhhccccchh--------hhhhHHHHHHHHHHHHHH
Confidence 99999999999999998776643 345555555555544443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.14 Score=49.19 Aligned_cols=115 Identities=8% Similarity=-0.041 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccc---cccccccchhhhhHHHHHHHhhhhhh
Q 008417 394 VKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLN---RKFGISDEWFAIGDSLILTVLSQASF 470 (566)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~ 470 (566)
.+..+.++-.+|..+..+..-+..+++.+.+..+.-.+..-++.+...... ....+...++.+...++.++..+...
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 456788999999998776432211333333322222211111111111100 00011111222222223333333333
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHH
Q 008417 471 MPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLG 508 (566)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~ 508 (566)
...+.+..+.++++++..+..+......+|-.+|..++
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHHH----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32335666777777777766666666666666666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG2836 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.76 E-value=19 Score=31.97 Aligned_cols=78 Identities=9% Similarity=-0.033 Sum_probs=45.4
Q ss_pred hcccchhHHHHHHHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCC---cchhhHHHHH
Q 008417 351 VKQPNVFLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVP---LRKIFLANTI 427 (566)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g---~~~~~~~~~~ 427 (566)
+..+..+......+.+++..-........+....| |+.+-++.+..++++.+...+..|..++++. |++....+..
T Consensus 127 l~~~~~~~~~~lG~~wG~lPCGlVYs~l~~A~~tg-S~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~~r~~~~rl~~g 205 (232)
T COG2836 127 LPLKPLPGALFLGMLWGLLPCGLVYSALAYALSTG-SAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKSSRKRLNRLSGG 205 (232)
T ss_pred cccCcchHHHHHHHHhcccchHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344555556666666543322222222222334 7777788888899999988888888877653 4444444444
Q ss_pred HH
Q 008417 428 FG 429 (566)
Q Consensus 428 ~~ 429 (566)
++
T Consensus 206 l~ 207 (232)
T COG2836 206 LM 207 (232)
T ss_pred HH
Confidence 43
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.37 E-value=6.3 Score=39.94 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhH
Q 008417 224 ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGS 287 (566)
Q Consensus 224 ~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 287 (566)
++-+..++..++.|+..|........+..+..++++++..|..+++.. .+|..+|..++-.
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l---~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFL---LVGLALGAVLSFL 430 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 355677888999999999988888888888887666666666666555 6777777766533
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 7e-09
Identities = 41/372 (11%), Positives = 105/372 (28%), Gaps = 38/372 (10%)
Query: 158 YLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS- 215
+L D H+ ++T +I SL L+ +PL+G +SD G R+ +++G+L +
Sbjct: 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK---LGLRKYLLWIITGMLVMFAP 89
Query: 216 ----WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCW 271
+ + + V++ + + +R + ++ +
Sbjct: 90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFG---RARMF 146
Query: 272 GSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPL 331
G G + + G M + + ++ + + +
Sbjct: 147 GC--VGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK-------TDAPSSATV 197
Query: 332 GDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFY-FTT---NELGFT 387
+ S ++ E +QP ++ +L+V T F F T
Sbjct: 198 ANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257
Query: 388 PEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLNRKF 447
G V + + + + + + + L + ++
Sbjct: 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL----LAGTIMSVRIIG-------S 306
Query: 448 GISDEWFAIGDSLILTVLSQASFMPVLV-LAARLCPEGMEATLFATLMSISNG-GSVLGG 505
+ + L + + AT++ +
Sbjct: 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 506 LLGAGLTQLFGV 517
+L + + G
Sbjct: 367 VLAGNMYESIGF 378
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Query: 202 RSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQS 261
++ L+L+G + ++ + S + L V F V + +
Sbjct: 289 KNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR--- 344
Query: 262 VSGSLQSLCWG-SSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLITSGVAVLV 315
S ++ +C+ I S +G+M ++ G + + V L+ L + ++V
Sbjct: 345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 63/416 (15%), Positives = 122/416 (29%), Gaps = 107/416 (25%)
Query: 60 FKKKDMSVAVPITAPSLRRDKSEKSLLDYESGAGKGDMLTRDTEGEMSTPSKSSPHESRY 119
++ KD+ + + + + K + D K + + + + + S +
Sbjct: 16 YQYKDI---LSVFEDAFVDNFDCKDVQDMP----KSILSKEEIDHIIMSKDAVS--GTLR 66
Query: 120 LSNGAKFFGVDLSPDNFAVAMVYFVQGVLGLARLAVNF-YLKDDLHLDPAETAVIS-GFS 177
L F LS V FV+ VL +N+ +L + + + ++++ +
Sbjct: 67 L------FWTLLSKQEEMVQK--FVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 178 SLPWLIKPLYG----FISDSLP-----------LFGYRRRSYLVLSGLLGALSWSLMATI 222
LY F ++ L R +++ G+LG+ + +
Sbjct: 114 EQ---RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 223 VES-----------------KYSAALSIL--LGSLSVAFS---DVVVDSMVVERARGESQ 260
S ++ ++L L L D +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS--SNIKLRIH 228
Query: 261 SVSGSLQSLCWGSSAFGG---IVSSYFSGSMVDAYGV--------RFVFGVTALLPLITS 309
S+ L+ L S + ++ + + +A+ + RF VT L T+
Sbjct: 229 SIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAATT 286
Query: 310 GVAVLVKEQQVLGPS------------RRQNLP----LGDP---SFFESSKQNMFQLWEA 350
L L P R Q+LP +P S S ++ W+
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 351 VKQPNV--FLPTLFVFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLL 404
K N + L P MF L P T + SL+
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPP---SAHIPTILLSLI 395
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 25/181 (13%), Positives = 62/181 (34%), Gaps = 14/181 (7%)
Query: 157 FYLKDDLHLDPAETAVISGFSSLPWLI----KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212
YLK+ H +++ L L G++SD + ++ +
Sbjct: 277 TYLKEVKHFALDKSSW---AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333
Query: 213 ALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWG 272
A + + +++ + +++ +E A ++ + L
Sbjct: 334 ATI-VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF-- 390
Query: 273 SSAFGGIVSSYFSGSMVDAYG---VRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNL 329
G + +S G VD +G V ++L +I + V++ E++ ++ +
Sbjct: 391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL-IVVMIGEKRRHEQLLQELV 449
Query: 330 P 330
P
Sbjct: 450 P 450
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.94 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.37 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.27 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.25 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.2 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.2 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.07 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.75 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=275.48 Aligned_cols=351 Identities=12% Similarity=0.092 Sum_probs=262.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
++.++..++..++.......+.+.+.+++|++..++|++.+++.+++.+ ++++|+++|| +|||+.++++.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-----~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-----LSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hcchHHHHHHHHHHH
Confidence 4455566666676633444444556678999999999999999999887 7888999999 999999999999999
Q ss_pred HHHHHH---HhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhh-
Q 008417 214 LSWSLM---ATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV- 289 (566)
Q Consensus 214 ~~~~~~---~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~- 289 (566)
++.+++ ++ +++++.+++.|++.|++.+...+...+++.|++ ++++|+...++...+..+|.++++.+++.+.
T Consensus 103 ~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 103 LGAALFWPAAE-IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG---PESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHhccc-cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988 76 899999999999999999999999999999999 6677888888899999999999999999998
Q ss_pred cccC-------------------------hHHHHHHHHHHHHHHHHhhee--eccccccCCCcCCCCCCCCCccccchHH
Q 008417 290 DAYG-------------------------VRFVFGVTALLPLITSGVAVL--VKEQQVLGPSRRQNLPLGDPSFFESSKQ 342 (566)
Q Consensus 290 ~~~g-------------------------wr~~f~i~~i~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (566)
+..+ ||+.|++.+++.++..+..++ .||+++++++++ +.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------~~~~ 246 (438)
T 3o7q_A 179 SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------------KQGS 246 (438)
T ss_dssp TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------------STTS
T ss_pred cccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------------cccc
Confidence 5554 999998888776664333333 344332211111 1112
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhhcccchhhhHHHH-hhc-cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q 008417 343 NMFQLWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYFT-TNE-LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRK 420 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~ 420 (566)
..+..++.+++|.++...+..+++.........+.+.+ .++ +|+++.+.+.......++.+++.++.+++.||+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 33455677889888888776666665544444554444 544 5999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhh
Q 008417 421 IFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGG 500 (566)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 500 (566)
.+..+.++..+..+.+.+....+ ... ..++.++.....+....++..+..|++ ++.+.++.. ...++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 327 VLAAYALIAMALCLISAFAGGHV----------GLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHH----------HHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcH----------HHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 98888877766655443322211 111 112222233333333337778888866 888888777 77899
Q ss_pred hhhHhHHHHHHHHhcC-CCC
Q 008417 501 SVLGGLLGAGLTQLFG-VTK 519 (566)
Q Consensus 501 ~~i~~~~~g~l~~~~g-~~~ 519 (566)
+.++|.+.|.+.+..| +..
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~ 413 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPT 413 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGG
T ss_pred HHHHHHHHHHHHHHhcchHH
Confidence 9999999999999988 654
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=288.07 Aligned_cols=368 Identities=13% Similarity=0.010 Sum_probs=267.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHH
Q 008417 135 NFAVAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGA 213 (566)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~ 213 (566)
++.+++..+..++.........+.+.+++ .+..++|++.+++.++..+ ++++|+++|| +|||++++++.++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-----cCchHHHHHHHHHHH
Confidence 44455555665655333333444555678 9999999999999998888 7889999999 999999999999999
Q ss_pred HHHHHHHhh---cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc
Q 008417 214 LSWSLMATI---VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD 290 (566)
Q Consensus 214 ~~~~~~~~~---~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 290 (566)
++.+++++. +++++.++++|++.|++.+...+...+++.|++ ++++|+..+++...+..+|.++||.+++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~---~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW---SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC---CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888752 568889999999999999999999999999999 66678889999999999999999999999888
Q ss_pred ccC-hHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCC-C-cc--ccchHHHHHH--HHHHhcccchhHHHHH
Q 008417 291 AYG-VRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGD-P-SF--FESSKQNMFQ--LWEAVKQPNVFLPTLF 362 (566)
Q Consensus 291 ~~g-wr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~ 362 (566)
..| ||+.|++.+++.++ .++..+++||++++....++++..++ + .. .++.+...++ .++.+++|.++...+.
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 260 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence 898 99999999988877 45556677877654322111111000 0 00 0000111111 3456778888777776
Q ss_pred HHHHhhcccchhhhHHHHhhc-cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC--CcchhhHHHHHHHH-HHHhHHHH
Q 008417 363 VFLWQATPHSDSAMFYFTTNE-LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV--PLRKIFLANTIFGT-ALGMTQVF 438 (566)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--g~~~~~~~~~~~~~-~~~~~~~~ 438 (566)
.++..........+.+.+.++ +|+++.+.+++.....++.+++.++.+++.||+ ++|+.+..+.++.. ++.+.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 666666555555566666655 899999999999999999999999999999999 98888777766655 33222211
Q ss_pred hhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhh-hhhhHhHHHHHHHHhcCC
Q 008417 439 LVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNG-GSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~~~g~l~~~~g~ 517 (566)
... .+. +......++.++...........+..+..|++.+|+++|+.+.+.++ |..+++.+.|.+.+..|+
T Consensus 341 ~~~-~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 341 NPA-GNP-------TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp CCT-TCH-------HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred hcc-cCH-------HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 110 010 12222222333333333333348899999999999999999999999 999999999999998775
Q ss_pred CC
Q 008417 518 TK 519 (566)
Q Consensus 518 ~~ 519 (566)
..
T Consensus 413 ~~ 414 (451)
T 1pw4_A 413 DG 414 (451)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=263.35 Aligned_cols=379 Identities=13% Similarity=0.062 Sum_probs=251.7
Q ss_pred CHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHh-----------------hcchHH
Q 008417 166 DPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMAT-----------------IVESKY 227 (566)
Q Consensus 166 s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 227 (566)
+..+.|++.+.+.+|.++ ++++|+++|| +|||+.++++.+++.++.+++++ .+++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-----~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-----FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH
Confidence 345678888888999988 5677999999 99999999999999999998873 278999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc--------cChHHHHH
Q 008417 228 SAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA--------YGVRFVFG 299 (566)
Q Consensus 228 ~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~gwr~~f~ 299 (566)
.++++|+++|++.+...+....+++|+. ++++|+...+....+..+|.++++.++..+... .+||+.+.
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~---p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELA---PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS---CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 9999999999999999999999999999 667778888888777788888888887766532 35888888
Q ss_pred HHHHHHHHHHHhheeeccccccCCCcCCCCCCCCC-------cc-ccc---hHHHHH------HHHHHhcccchhHHHHH
Q 008417 300 VTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDP-------SF-FES---SKQNMF------QLWEAVKQPNVFLPTLF 362 (566)
Q Consensus 300 i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-------~~-~~~---~~~~~~------~~~~~~~~~~~~~~~~~ 362 (566)
+..+..++.++..+++||++++...+.+.++.++. .. .+. .++... ......+.++.......
T Consensus 205 ~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (491)
T 4gc0_A 205 SECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVML 284 (491)
T ss_dssp TTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHH
Confidence 88887777778888899998764322211110000 00 000 000000 00111222333333322
Q ss_pred HHHHhh-cccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhh
Q 008417 363 VFLWQA-TPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVT 441 (566)
Q Consensus 363 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 441 (566)
.++... .......+.....+..+.+.........+..+..+++.++.+++.||+|||+.+..+.....++.+.+.....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 285 SIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 222222 2222333344445567777777777778888999999999999999999999998888877776655543322
Q ss_pred ccccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCCCc
Q 008417 442 GLNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGVTKD 520 (566)
Q Consensus 442 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~~~ 520 (566)
..... ........+........+.|.. .+.+|.+|.+.|+++.|+.+.+..+++.+++.+.+.+.+......
T Consensus 365 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~- 437 (491)
T 4gc0_A 365 TQAPG------IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA- 437 (491)
T ss_dssp TTCCH------HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-
T ss_pred cccch------HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 21110 1111222222233444555555 889999999999999999999999999999998887765321100
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhccCCCCCCCCCccchh
Q 008417 521 SFDNLATLIILCNLSSLLPLPLIGLLPQDSPDSTSKESE 559 (566)
Q Consensus 521 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 559 (566)
.+.....+++.++++.+..++.++++||+|+++.||.++
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence 000011112222222223333456789999998877654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=252.79 Aligned_cols=367 Identities=14% Similarity=0.078 Sum_probs=241.3
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhh-----cCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCC-CCchHhH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDD-----LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGY-RRRSYLV 206 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~-grr~~~~ 206 (566)
++.++...+...+. ......+++|+.++ +|++..+.+++.+++.++..+ ++++|+++|| + |||++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~~g~r~~~~ 89 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR-----IIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccchHHHH
Confidence 44445555555554 34556677888777 999999999999999888887 7788999999 6 9999999
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHh
Q 008417 207 LSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286 (566)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 286 (566)
.+.++..++.+++++ +++++.++++|++.|++.+...+...+++.|+++++++ .|+..++..+.+.++|.++||.+++
T Consensus 90 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 90 WGGVLIMLGHIVLAL-PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-RRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHHHHHHHHHHHHHS-CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-cceeeehHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 99999999999999999999999999999999955332 3677788888888999999999999
Q ss_pred HhhcccChHHHHHHHHHHHHHHHHhheee-ccccccCCCcCCCCCCCCCccccchHHHHHH-------------------
Q 008417 287 SMVDAYGVRFVFGVTALLPLITSGVAVLV-KEQQVLGPSRRQNLPLGDPSFFESSKQNMFQ------------------- 346 (566)
Q Consensus 287 ~l~~~~gwr~~f~i~~i~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 346 (566)
.+.+..|||+.|++.++..++.++..++. ++..+++.... +.+.+ .++.++..+.
T Consensus 168 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 242 (491)
T 4aps_A 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP-TDPLA----PEEVKPLLVKVSLAVAGFIAIIVVMNLVG 242 (491)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC-SCCCS----HHHHHHHHHHCCCCCHHHHHHHHHHHHHS
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC-CCccc----cchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999887776644444333 32221111111 00000 0000000000
Q ss_pred -----------------------------HHH--Hhccc--chhHHHHHHHHHhhcccchhhhHH-HHhhccCCChhhhh
Q 008417 347 -----------------------------LWE--AVKQP--NVFLPTLFVFLWQATPHSDSAMFY-FTTNELGFTPEFLG 392 (566)
Q Consensus 347 -----------------------------~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g 392 (566)
... ..+++ ..+...+..+++...+.......+ +..+..+.+....+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4aps_A 243 WNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS 322 (491)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG
T ss_pred CcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH
Confidence 000 01111 122222223333332223333333 33444677767788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhH-----HHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhh
Q 008417 393 RVKFVTSVASLLGVGLYNGFLKNVPLRKIFL-----ANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQ 467 (566)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 467 (566)
++.....++.+++.++.+++.||+++|+... .+.++.+++.+.+.+............ .+......++.++...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~ 401 (491)
T 4aps_A 323 WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVS-PLWLVGSWALVILGEM 401 (491)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCC-THHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-HHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999886544 555555555444433221100000001 0112222222222333
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 008417 468 ASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQL 514 (566)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~ 514 (566)
....+...+..+..|++.||++.|+.+....+|..+++.+.+.+.+.
T Consensus 402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333448999999999999999999999999999999998887754
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=252.35 Aligned_cols=345 Identities=14% Similarity=0.041 Sum_probs=247.8
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHH
Q 008417 138 VAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALS 215 (566)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~ 215 (566)
++...+..++. ....+.++ .+.+++|.+..+.+++.+.+.++..+ ++++|+++|| +|||+.++.+.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-----VGRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-----SCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHH
Confidence 44455555554 34444444 45577999999999999999888877 7889999999 99999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcccChH
Q 008417 216 WSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGVR 295 (566)
Q Consensus 216 ~~~~~~~~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gwr 295 (566)
.+.+++ +++++.+++.|++.|++.+...+...+++.|++ ++++|+..++.......+|.+++|.+++++.+..|||
T Consensus 79 ~~~~~~-~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 79 TLVAVT-TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY---ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHH-hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 999998 899999999999999999999999999999999 5567788888888888999999999999999989999
Q ss_pred HHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHHhhcccchh
Q 008417 296 FVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPHSDS 374 (566)
Q Consensus 296 ~~f~i~~i~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (566)
+.|++.+++.++..+ ..+++||++++++++++ .+ ++.++.+++|.++...+..++.........
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR------------LL---TSYKTLFGNSGFNCYLLMLIGGLAGIAAFE 219 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCC------------TT---TCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCCccccc------------HH---HHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 999999888877444 55667776553221110 00 112234556666666655555444433334
Q ss_pred hhHHHHhhc-cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHH-HHHHHhHHHHhhh-cccccccccc
Q 008417 375 AMFYFTTNE-LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIF-GTALGMTQVFLVT-GLNRKFGISD 451 (566)
Q Consensus 375 ~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 451 (566)
.+.+.+.++ +|+++.+.+.+.....++.+++.++.+++.||.++ .+..+... ...+...+..... ..+.
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 291 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWFGVMNV------ 291 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHHHHHHH------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhccccH------
Confidence 444444444 78889999999999999999999999999999876 22333322 2222221111110 0010
Q ss_pred chhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 452 EWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 452 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
+......++.++..+........+..+..| +++|++.|+.+...++|..+++.+.|.+.+..++
T Consensus 292 -~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 355 (375)
T 2gfp_A 292 -WTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355 (375)
T ss_dssp -HHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 111122223333333333333478888888 8999999999999999999999999999876543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-27 Score=239.40 Aligned_cols=361 Identities=14% Similarity=0.116 Sum_probs=216.8
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~ 210 (566)
+.++.+...++...+. ....+.++.|+++++|++..++|++.+.+.++..+ ++++|+++|| +|||+.++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-----~Grr~~l~~~~~ 81 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-----LGLRKYLLWIIT 81 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-----STTCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHH
Confidence 3344444444444333 45567788899888999999999999999888877 7899999999 999999998887
Q ss_pred HHHHHHHH---HHhhcchH-HHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHh
Q 008417 211 LGALSWSL---MATIVESK-YSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286 (566)
Q Consensus 211 ~~~~~~~~---~~~~~~~~-~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 286 (566)
+..++... ..+ .+.. ...+..+++.+++.+.........+.++.++.+ ++++..++....+..+|..++|.+++
T Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~~~~l~~ 159 (417)
T 2cfq_A 82 GMLVMFAPFFIFIF-GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-RRSNFEFGRARMFGCVGWALGASIVG 159 (417)
T ss_dssp HTTSCHHHHHHHTH-HHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-HHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-hhcccchHHHHHHHHHHHHHHHHHHH
Confidence 76543211 122 2111 112334444444333333333334444443222 23455566666666899999999999
Q ss_pred HhhcccChHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHHHH
Q 008417 287 SMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLW 366 (566)
Q Consensus 287 ~l~~~~gwr~~f~i~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (566)
++.+ .+||+.|++.++..++.++..++.+|++++..+++++.+.++ .+...++.++.+++|.++...+..+..
T Consensus 160 ~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T 2cfq_A 160 IMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH------SAFSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp HHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCC------CCCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccccccccccccccc------ccccHHHHHHHhcCCchhhHHHHHHHH
Confidence 9886 589999998877655544444444443321111010000000 001123445667888776655443333
Q ss_pred hhcccchhhhHH-HHhhccC---CChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc
Q 008417 367 QATPHSDSAMFY-FTTNELG---FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG 442 (566)
Q Consensus 367 ~~~~~~~~~~~~-~~~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (566)
...+.......+ ++.+.++ .+....++...+..++.+++.++.+++.||+++|+.+..+.++.++..+.+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--- 309 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---
Confidence 222222222222 2233333 224456777778888889999999999999999998887776666543332211
Q ss_pred cccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHH-HHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 443 LNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFAT-LMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
.+. +.......+..+.......+...+..|..|++.||+++++ ++....+|+.++|.++|.+.+..|+
T Consensus 310 ~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~ 378 (417)
T 2cfq_A 310 TSA-------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp CSH-------HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH
T ss_pred ccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc
Confidence 110 1111111111222222222334789999999999999999 4888889999999999999987653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=234.08 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhh-hhhhhhHHHHHHhhcC------CCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCC-CCchHhH
Q 008417 136 FAVAMVYFVQGVL-GLARLAVNFYLKDDLH------LDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGY-RRRSYLV 206 (566)
Q Consensus 136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g------~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~-grr~~~~ 206 (566)
+.+....+...+. ......++.|+.+++| ++..+.+++.+++.++..+ .++.|+++|| + |||++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~~g~r~~~~ 89 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-----FFGKYNTIL 89 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-----SSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcchHHHH
Confidence 3344444444443 4456677888888899 9999999999999888877 6788999999 8 9999999
Q ss_pred HHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHH
Q 008417 207 LSGLLGALSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS 285 (566)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 285 (566)
++.++.+++.+++++ ++ +++.+++.|++.|++.+...+...+++.|++++++++++...+++...+.++|.++||.++
T Consensus 90 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 90 WLSLIYCVGHAFLAI-FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 87 9999999999999999999999999999999665555555666668888899999999999
Q ss_pred hHhhcccChHHHHHHHHHHHHHHHHhhe
Q 008417 286 GSMVDAYGVRFVFGVTALLPLITSGVAV 313 (566)
Q Consensus 286 ~~l~~~~gwr~~f~i~~i~~~~~~~~~~ 313 (566)
+.+.+..|||+.|++.+++.++..+..+
T Consensus 169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 169 PLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999889999999999888776444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-12 Score=129.19 Aligned_cols=174 Identities=13% Similarity=0.042 Sum_probs=138.2
Q ss_pred cchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCC--CCchHhHHH
Q 008417 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGY--RRRSYLVLS 208 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~--grr~~~~~~ 208 (566)
+.++.+.+..+...+. ......++.++++.+|.+..+.+++.+...++.++ .++.|+++|| + |||+.+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-----~~~~~~~~~~~~ 326 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-----VFRGNRGATGVF 326 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCchhHHHH
Confidence 3355555555554443 45566778888877899999999998888777777 6788999999 8 899988888
Q ss_pred HHHHH-HHHHHHHhhc--chHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHH-HHHHHHHH
Q 008417 209 GLLGA-LSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYF 284 (566)
Q Consensus 209 ~~~~~-~~~~~~~~~~--~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~ 284 (566)
.++.. ++.+.+.+ . .+.+.+++..++.|++.+...+....++.|.. ++++|+..+++......+ |..++|.+
T Consensus 327 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~g~~~~~~~ 402 (451)
T 1pw4_A 327 FMTLVTIATIVYWM-NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA---PKKAAGTAAGFTGLFGYLGGSVAASAI 402 (451)
T ss_dssp HHHHHHHHHHHTTS-CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS---CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh---chhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77766 66666655 4 36777788888999988888888888999999 666789999999888899 99999999
Q ss_pred HhHhhcccChHHHHHHHHHHHHHHHHhheee
Q 008417 285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLV 315 (566)
Q Consensus 285 ~~~l~~~~gwr~~f~i~~i~~~~~~~~~~~~ 315 (566)
.+.+.+..||+..|++.+++.++..+..+++
T Consensus 403 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 403 VGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887755444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.8e-11 Score=118.41 Aligned_cols=143 Identities=10% Similarity=0.039 Sum_probs=108.6
Q ss_pred HHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc
Q 008417 363 VFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG 442 (566)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (566)
.++..+.........+.+.+++|.+..+.|++.+...++..++.++.|++.||+|+|+.+.++.++..++.++.......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 114 (438)
T 3o7q_A 35 FFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI 114 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 33344433445555666778899999999999999999999999999999999999999999999888887766332221
Q ss_pred cccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 008417 443 LNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLT 512 (566)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~ 512 (566)
.+. +..+..-++.++..+.......+++.+..|+++|+.+.++.+....+|..+++.+++.+.
T Consensus 115 ~~~-------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 MNY-------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccH-------HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 222222333333444444444499999999999999999999999999999999999998
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=117.66 Aligned_cols=144 Identities=13% Similarity=-0.022 Sum_probs=108.9
Q ss_pred HHHHhhcccchhhhHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhc
Q 008417 363 VFLWQATPHSDSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTG 442 (566)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (566)
.++............+.+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.+...+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 88 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL 88 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence 33334433344455566678899999999999999999999999999999999999999999988888887766554321
Q ss_pred cccccccccchhhhhHHHHHHHhhhhhhHHHH-HHHHhhCCCCchHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCC
Q 008417 443 LNRKFGISDEWFAIGDSLILTVLSQASFMPVL-VLAARLCPEGMEATLFATLMSISNGGSVLGGLLGAGLTQLFGV 517 (566)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~ 517 (566)
+ ......++.+ .+.....+.. +++.|..|+++|++++++.+....+|..+++.+++.+.+..|+
T Consensus 89 ~----------~l~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 89 T----------VLIAASAMQG-MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp H----------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred H----------HHHHHHHHHH-HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 1 1222222223 3333344444 8899999999999999999999999999999999999876553
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-10 Score=115.63 Aligned_cols=125 Identities=11% Similarity=0.020 Sum_probs=97.0
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHHHHHHHHHHHhHHHHhhhccccccccccchhhhhHHHHH
Q 008417 384 LGFTPEFLGRVKFVTSVASLLGVGLYNGFLKN-VPLRKIFLANTIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLIL 462 (566)
Q Consensus 384 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 462 (566)
+|++..+.+++.+...++..++.++.|++.|| +|||+.+..+.++..++.+++.+.... +......++.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~ 118 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA----------SALFGSIILI 118 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST----------THHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHH
Confidence 89999999999999999999999999999999 899999999988888776655432211 1122222333
Q ss_pred HHhhhhhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHhhhhhhHhHHHHHHHHhcCCC
Q 008417 463 TVLSQASFMPVLVLAARLCPEGM--EATLFATLMSISNGGSVLGGLLGAGLTQLFGVT 518 (566)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~~~~~g~l~~~~g~~ 518 (566)
++..+.......+++.|.+|+++ |+.++++.+...++|..++|.+++.+.+..|+.
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 176 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYH 176 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33333333333489999999888 788888899999999999999999999987644
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=116.53 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=118.3
Q ss_pred hHHHHHHhhcCC---CHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHH
Q 008417 154 AVNFYLKDDLHL---DPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSA 229 (566)
Q Consensus 154 ~l~~~l~~~~g~---s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (566)
.++.|+.+.++. +....++..++..+...+ .++.|+++|| +|||+.+..+.++.+++.+.+++ .++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 315 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-----IGGKNALLLAGTIMSVRIIGSSF-ATSALEV 315 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHTT-CCSHHHH
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHHHHHHHH-hccHHHH
Confidence 356676665553 234456666655555555 5677999999 99999999888888888777776 7777777
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHH-HHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHH
Q 008417 230 ALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLC-WGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLIT 308 (566)
Q Consensus 230 ~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~~ 308 (566)
++..++.+++.+...+....++.|.+ +.+.|+..++.. +....+|.+++|.++|++.+..|++..|.+.+++.++.
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQF---EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 78888888877766666678899998 556777777774 66667999999999999998889999999988887774
Q ss_pred H-Hhheeeccccc
Q 008417 309 S-GVAVLVKEQQV 320 (566)
Q Consensus 309 ~-~~~~~~~e~~~ 320 (566)
. +..++.||+++
T Consensus 393 ~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 393 TLISVFTLSGPGP 405 (417)
T ss_dssp HHHHTTSSCCSCT
T ss_pred HHHHHhhhcCCCc
Confidence 4 44455565444
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=111.88 Aligned_cols=155 Identities=9% Similarity=-0.123 Sum_probs=107.5
Q ss_pred cchhHHHHHHHHHhhcccchhhhH-HHHhhccC------CChhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHHH
Q 008417 354 PNVFLPTLFVFLWQATPHSDSAMF-YFTTNELG------FTPEFLGRVKFVTSVASLLGVGLYNGFLKNV-PLRKIFLAN 425 (566)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~ 425 (566)
+.++...+..++..+.+.....+. .++.+++| +++.+.+++.....++.+++.++.|++.||+ |+|+.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 344555444454444433333443 34456688 9999999999999999999999999999999 999999988
Q ss_pred HHHHHHHHhHHHHhhhccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHH---HHHHHhhhhh
Q 008417 426 TIFGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFAT---LMSISNGGSV 502 (566)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~lg~~ 502 (566)
.++..++.+++.+.. .+. +.+....++.++..+.......+++.+.+|+++|++..++ .+...++|..
T Consensus 92 ~~~~~~~~~~~~~~~--~~~-------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 92 SLIYCVGHAFLAIFE--HSV-------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp HHHHHHHHHHHHHTS--SCH-------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--ccH-------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence 888877766554432 011 1122222333333333333344899999999999766555 8899999999
Q ss_pred hHhHHHHHHHHhcCC
Q 008417 503 LGGLLGAGLTQLFGV 517 (566)
Q Consensus 503 i~~~~~g~l~~~~g~ 517 (566)
+++.+++.+.+..|+
T Consensus 163 ~g~~~~~~l~~~~g~ 177 (524)
T 2xut_A 163 FASLSMPLLLKNFGA 177 (524)
T ss_dssp HHHHTSTHHHHTSCH
T ss_pred HHHHHHHHHhccccH
Confidence 999999999886654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.9e-08 Score=98.25 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=106.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhh---cchHHHHHH
Q 008417 156 NFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATI---VESKYSAAL 231 (566)
Q Consensus 156 ~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 231 (566)
.+++.+..+.+............+...+ .++.+.+.|| +|||+.++.+.....++.+.++.. ..+.+..++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-----~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-----FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-----hcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 3344455687777766655555554444 5677999999 999999999988888777666542 111122222
Q ss_pred HHHHHHHHHH-hHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhc------ccChHHHHHHHHHH
Q 008417 232 SILLGSLSVA-FSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD------AYGVRFVFGVTALL 304 (566)
Q Consensus 232 ~r~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~gwr~~f~i~~i~ 304 (566)
..++...+.+ ...+....+.+|++ +.+.|+...++......+|.++++.+...+.+ ..++.+.|++.+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~f---Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIF---PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSS---CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 2222222222 23345667899999 67788888898888888888888877665542 35677788888888
Q ss_pred HHH-HHHhheeecccccc
Q 008417 305 PLI-TSGVAVLVKEQQVL 321 (566)
Q Consensus 305 ~~~-~~~~~~~~~e~~~~ 321 (566)
+++ .++.++++||++..
T Consensus 452 ~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHheecCCCCC
Confidence 887 55667889998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.24 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.18 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=4.7e-31 Score=266.11 Aligned_cols=368 Identities=11% Similarity=0.001 Sum_probs=252.2
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHH
Q 008417 138 VAMVYFVQGVLGLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSW 216 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~ 216 (566)
+++.++...+.......+.++++| +|+|.+++|++.+++.+++.+ ++++|+++|| +|||+++.++.++.+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-----~g~r~~~~~~~~~~~~~~ 103 (447)
T d1pw4a_ 30 IFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILAAAVM 103 (447)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHHHH
Confidence 333344444433334455667765 799999999999999999888 7888999999 999999999999999998
Q ss_pred HHHHhh---cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHHhHhhcc-c
Q 008417 217 SLMATI---VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDA-Y 292 (566)
Q Consensus 217 ~~~~~~---~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~ 292 (566)
+++++. ..+++.+++.|++.|++.+...+...+++.|++ ++++|+..+++...+..+|.++++.+++.+... .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 180 (447)
T d1pw4a_ 104 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW---SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180 (447)
T ss_dssp HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred hhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence 888762 247788999999999999999999999999999 667788899998888899999999998887654 4
Q ss_pred ChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCc------cccchHHHHHHHHHHhcccchhHHHHHHHH
Q 008417 293 GVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPS------FFESSKQNMFQLWEAVKQPNVFLPTLFVFL 365 (566)
Q Consensus 293 gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (566)
+||+.|++.+++.++ .++.+++++++++.......++..++.. ..++........+..++++.++......++
T Consensus 181 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (447)
T d1pw4a_ 181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF 260 (447)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhh
Confidence 799999998888777 5555566666554432221111111000 000000111223445667777766655555
Q ss_pred HhhcccchhhhHHHH-hhccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhhhccc
Q 008417 366 WQATPHSDSAMFYFT-TNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLVTGLN 444 (566)
Q Consensus 366 ~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (566)
..........+.+.+ .+..+++..+.+.......++.+++.++.+++.||+++++..........+..+..........
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (447)
T d1pw4a_ 261 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA 340 (447)
T ss_dssp HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred hhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhccc
Confidence 444433334444433 4557999999999999999999999999999999998876554444433333332222221111
Q ss_pred cccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHHHHHhhhh-hhHhHHHHHHHHhcCCCC
Q 008417 445 RKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLMSISNGGS-VLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 445 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~-~i~~~~~g~l~~~~g~~~ 519 (566)
. ..+......++.++...........+..+..|++.+|++.|+.+.+.++++ .++|.+.|.+.+..|+..
T Consensus 341 ~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~ 411 (447)
T d1pw4a_ 341 G-----NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 411 (447)
T ss_dssp T-----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHH
T ss_pred c-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 0 001122222222222223333333788999999999999999999988854 568999999999887644
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.1e-26 Score=230.60 Aligned_cols=363 Identities=12% Similarity=0.066 Sum_probs=229.3
Q ss_pred CcchHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHH
Q 008417 132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG 209 (566)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~ 209 (566)
++.++.+...+|...+. +...+.++.|+++++|+|..++|++.+++.+++.+ +|++|+++|| +|||+.++++.
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-----~grr~~l~~~~ 80 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-----LGLRKYLLWII 80 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-----HTTCTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHH
Confidence 34567777777776665 56677888899998999999999999999988887 7899999999 99999999999
Q ss_pred HHHHHHHHHHHhhcchHHHHHH----HHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHHHHHHHHHHH
Q 008417 210 LLGALSWSLMATIVESKYSAAL----SILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFS 285 (566)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~----~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 285 (566)
.+..++.+++.. ..+...... .+++.+.+.+...........+..++ +.+++....+........+..+++.++
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (417)
T d1pv7a_ 81 TGMLVMFAPFFI-FIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VSRRSNFEFGRARMFGCVGWALGASIV 158 (417)
T ss_dssp HHHHHTHHHHHH-HTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH-HHHHHSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc-hhhhhHHHHHHHhhhhccccccccccc
Confidence 888888887776 555544433 33333333333333333333333322 122333444555566678899999999
Q ss_pred hHhhcccChHHHHHHHHHHHHH-HHHhheeeccccccCCCcCCCCCCCCCccccchHHHHHHHHHHhcccchhHHHHHHH
Q 008417 286 GSMVDAYGVRFVFGVTALLPLI-TSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF 364 (566)
Q Consensus 286 ~~l~~~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (566)
+.+.+. +|++.+........+ .++..+..++++...+.++++++.+. +.......+..+++..+......+
T Consensus 159 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 230 (417)
T d1pv7a_ 159 GIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS-------AFSLKLALELFRQPKLWFLSLYVI 230 (417)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCC-------CCCHHHHHHHTTSSHHHHHHHHHH
T ss_pred cccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcc-------cccccccccccccccccchhhhhH
Confidence 988865 455555555544444 66666667666554333221111110 011122233344444333332222
Q ss_pred HHhhcccchhhhHHHHh----hccCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHhHHHHhh
Q 008417 365 LWQATPHSDSAMFYFTT----NELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTALGMTQVFLV 440 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~----~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 440 (566)
...............+. ...+.+....+.......++..++..+.+++.||.++++.+.++.++..+..+.+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (417)
T d1pv7a_ 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc
Confidence 22221111112222211 12244555677777888889999999999999999999999888888777655544322
Q ss_pred hccccccccccchhhhhHHHHHHHhhhhhhHHHHHHHHhhCCCCchHHHHHHHH-HHHhhhhhhHhHHHHHHHHhcCCCC
Q 008417 441 TGLNRKFGISDEWFAIGDSLILTVLSQASFMPVLVLAARLCPEGMEATLFATLM-SISNGGSVLGGLLGAGLTQLFGVTK 519 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~~~~~g~l~~~~g~~~ 519 (566)
.. +......++.++..+....+..+++.+.+|++.||++.|+.. ....+|..++|.+.|++.|.+|+..
T Consensus 311 ~~----------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~ 380 (417)
T d1pv7a_ 311 SA----------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp CH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cc----------chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 21 122222333333444444444489999999999999999864 5567999999999999999988654
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=3.8e-11 Score=118.83 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHH
Q 008417 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (566)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~ 212 (566)
.+.+....+..... .......+.++.+.++.+..+.++..++..+...+ .++.|+++|| ++||+.........
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-----VFRGNRGATGVFFM 325 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSTTCHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-----ccccccccccchhH
Confidence 44444444433333 44556677888888899999999998888777766 6677999999 77765444333332
Q ss_pred HHHHHHHHhh----cchHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcccCcccccchhHHHHHHhHH-HHHHHHHHHhH
Q 008417 213 ALSWSLMATI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYFSGS 287 (566)
Q Consensus 213 ~~~~~~~~~~----~~~~~~l~~~r~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~ 287 (566)
.+..+..... ..+.+..+++.++.|++.+...+....+..|.+ +++.|+...++.+....+ |.+++|.+.|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~ 402 (447)
T d1pw4a_ 326 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA---PKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402 (447)
T ss_dssp HHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222111 456677778888888888888888888999999 667788888887766566 56778999999
Q ss_pred hhcccChHHHHHHHHHHHHHHH
Q 008417 288 MVDAYGVRFVFGVTALLPLITS 309 (566)
Q Consensus 288 l~~~~gwr~~f~i~~i~~~~~~ 309 (566)
+.+.+||+..|++.+++.++..
T Consensus 403 ~~~~~g~~~~~~~~~~~~~~~~ 424 (447)
T d1pw4a_ 403 TVDFFGWDGGFMVMIGGSILAV 424 (447)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHH
Confidence 9999999999998887777643
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.9e-11 Score=119.34 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHhhhhhhh-cchhhhcccccCcCCCCCchHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhHh
Q 008417 166 DPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSD 244 (566)
Q Consensus 166 s~~~~g~~~s~~~~~~~~-~~~~G~lsDr~~~~G~grr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~g~~~~~~~ 244 (566)
+....+...+...++..+ ..+.+++.|| +++|+.+.++.++.+++.+.+.+ .++.+.+++..++.|++.+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINR-----IGGKNALLLAGTIMSVRIIGSSF-ATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccccccccchhhhhhhhcc-----cccccchhhhHHHHHHhhhcccc-ccccchhhHHHHHHHHHHHHHH
Confidence 445555555555555555 6677999999 99999999999999999999988 8999999999999999999999
Q ss_pred hhhhhhhhhhhcccCcccccchhHHH-HHHhHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHH-HHHhheeecccc
Q 008417 245 VVVDSMVVERARGESQSVSGSLQSLC-WGSSAFGGIVSSYFSGSMVDAYGVRFVFGVTALLPLI-TSGVAVLVKEQQ 319 (566)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~gwr~~f~i~~i~~~~-~~~~~~~~~e~~ 319 (566)
+...+++.|.+ +++.|++.++.. .....+|..++|.++|++.+.+||++.|++.+++.++ .++..+.+++++
T Consensus 331 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 331 VGCFKYITSQF---EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHS---CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999 666778888865 3455689999999999999999999999999988877 444455555443
|