Citrus Sinensis ID: 008456

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----
Protein Sequence
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKAST
Secondary Structure (PSIPRED)
ccccccccHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccHHccHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccccccccHHHHccccccccccccccccccccccccccccccccHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccHHHHccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcEcccccccEEcc
Coil and Loop (DISEMBL)
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEvlsdpkerawydshrsqilfsdlnsasncgpvpnlysyfsntafsgysdsgkgFYKVYSDLFNKIYSVEVSYVKKLGlgldvlreapimgnlespygqvTAFYNYWLGFStvmdfcwvdeydvmagpnrksrrVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKRLEKERMERAKryeepawariddegdnevgneegleeEEIEKKRSEFYCvlcgkkfksekqwtnheqskKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERfkdnvgveereigsgvgglsgdedveseffdvadgvevnevddrfgkededededaDDEVNMLKAMLSGhknrkrvavrkedevlKTEAHveneigesefmeydnckstrrknkkdrgkksggeaakgdrdgfkstneeanghhnsgvieessshscvgnknngisdnhsekdpkipdqpvdgkgtkkdrkaklknsskgnktkast
Flexible Loop (DISEMBL)
masekrclyevlglrkecttDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDvmagpnrksrrvmeeenkklrkkakreynetvrelaafvkkrdkrvMDMMvkkneeierkreeekerkkrlekermerakryeepawariddegdnevgneegleeeeiekkrSEFYCVLCGKKfksekqwtnheqskkhkekvaDLRESFVDEDEVMADFGELDGEVEELGerfkdnvgveereigsgvgglsgdeDVESEFfdvadgvevnevddrfgkededededadDEVNMLKAmlsghknrkrvavrkedevlkteahveneigesefmeydnckstrrknkkdrgkksggeaakgdrdgfkstneeanGHHNSGVIEESSSHSCVGNKNNgisdnhsekdpkipdqpvdgkgtkkdrkaklknsskgnktkast
Low Complexity Region (SEG)
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVkkneeierkreeekerkkrlekermerakrYEEPAWARiddegdnevgneegleeeeieKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFgeldgeveelgeRFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKededededaddeVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKAST
Disordered region (IsUnstruct)
******CLYEVLGLRKECTTDEIRSAYKKLALQR**************ATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVM****************************************************************************************************************EFYCVLCGKKF*****************************************************************************FFDVA******************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS****AEATAQFQELVHAYEVLSDPKERAWYDSHRSQ*************PVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEV******************MGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRK********************NETVRELAAFVKKRDKRVMD******************************************************************EFYCVLCGKKFKSEKQWTN*EQSKK*KEKVADLRE****************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI**************EKERMERAKRYEEPAWARIDDEGDN*************EKKRSEFYCVLCGKKFKS*****************ADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDR*************DEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNC************************DGFKSTNEEANGHHN*************GNKNNGISDNHSEKDPKIPDQP***************************
Disordered Region (DISPRO)
****KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKE*********MERAKRYEEPAWARIDDEGDN**************KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADF*********************************************************************DDEV*M****LS*****************************SE************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDKRVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKAST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	564	2.2.26 [Sep-21-2011]
Q0II91	533	DnaJ homolog subfamily C	yes	no	0.569	0.602	0.373	1e-56
Q6PGY5	545	DnaJ homolog subfamily C	yes	no	0.579	0.6	0.370	2e-56
Q5F1R6	531	DnaJ homolog subfamily C	yes	no	0.558	0.593	0.381	1e-54
P53863	590	J protein JJJ1 OS=Sacchar	yes	no	0.551	0.527	0.307	7e-38
O14213	380	Meiotically up-regulated	yes	no	0.5	0.742	0.258	4e-16
Q7TQ20	621	DnaJ homolog subfamily C	yes	no	0.436	0.396	0.280	1e-13
Q6NWJ4	618	DnaJ homolog subfamily C	no	no	0.384	0.351	0.270	4e-13
Q1RMH9	621	DnaJ homolog subfamily C	no	no	0.328	0.297	0.273	2e-12
P54103	621	DnaJ homolog subfamily C	no	no	0.328	0.297	0.268	6e-12
Q4R8H2	621	DnaJ homolog subfamily C	N/A	no	0.328	0.297	0.268	9e-12

>sp|Q0II91|DJC21_BOVIN DnaJ homolog subfamily C member 21 OS=Bos taurus GN=DNAJC21 PE=2 SV=2

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 208/364 (57%), Gaps = 43/364 (11%)

Query: 6   RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
           +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct: 2   KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query: 66  PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
           P+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct: 59  PQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query: 126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
           I   E+    +  L  D + + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct: 118 IAKEEL----ESALEED-MEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query: 185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVM---DMMVKKNEEIE 241
               NR  +R ME+ENKK+R KA++E NE VR+L AF++KRD+RV     ++ ++N E  
Sbjct: 173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRVQAHRKLVEEQNAEKA 232

Query: 242 RKREEEKERKKRLEKERMERAKRYEEPAWARIDD----------EGDNEVGNEEGLEEEE 291
           RK E  + R+++L++ ++  A++Y E +W  + D          + + + G+  G +E E
Sbjct: 233 RKAEAMR-RQQKLKQAKL--AEQYREQSWMAVADLEKELREMEAQYEKQFGDGSGEDEAE 289

Query: 292 IEKKR-----------------SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334
            ++ R                    YC  C K FK+EK   NHE+SKKH+E VA L++  
Sbjct: 290 DQELRDGQDGKDSDEAEDAELYDGLYCPACDKSFKTEKAMRNHEKSKKHREMVALLKQQL 349

Query: 335 VDED 338
            +E+
Sbjct: 350 EEEE 353

May act as a co-chaperone for HSP70.
Bos taurus (taxid: 9913)

>sp|Q6PGY5|DJC21_DANRE DnaJ homolog subfamily C member 21 OS=Danio rerio GN=dnajc21 PE=2 SV=1

 Score =  221 bits (562), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 205/375 (54%), Gaps = 48/375 (12%)

Query: 6   RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEVLS 64
           +C YEVLG++++ + D+++ AY+KLAL+ HPDK     L  AE A  QF+ +  AY+VLS
Sbjct: 2   KCHYEVLGVKRDASDDDLKKAYRKLALKWHPDK----NLDNAEDAAEQFKLIQAAYDVLS 57

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
           DP+ERAWYD+HR  +L   ++       + +L  +F+ T +SGY D  KGFY VY ++F 
Sbjct: 58  DPQERAWYDNHREALLKGGVSGEYQDDSI-DLVQFFTVTCYSGYGDDEKGFYAVYRNVFE 116

Query: 125 KIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYD 183
            I   E  + K      D     P  G  ES Y  V   FY YW  F T  +F W +EYD
Sbjct: 117 SIVKEEKEHSKDEEDEEDEF---PSFGESESDYDTVVHLFYGYWQSFCTRKNFAWKEEYD 173

Query: 184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM--MVKKNEEIE 241
                NR  +R ME+ENKK R KA++E+NE VR+L AFV+KRDKRV     +V++    +
Sbjct: 174 TRQASNRWEKRAMEKENKKTRDKARKEHNELVRQLVAFVRKRDKRVQAHKKLVEEQNAEK 233

Query: 242 RKREEEKERKKRLEKERMERAKRYEEPAWARID------------------DEGDN---- 279
            K+ EE  RK++L + ++  A+ Y+E +W  +                   D  D+    
Sbjct: 234 AKKVEELRRKQKLSQAKL--AEDYQEQSWTAMSELEKELQQMEAEYGQEFGDASDSEENE 291

Query: 280 ------EVGNEEGLE------EEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327
                 ++ N +G++        E++    + YC  C K FKS+K   NH +SKKH+E V
Sbjct: 292 EELESRDIANVDGVDAVMADGAAEMDDYYDDLYCPACDKSFKSDKAMKNHSKSKKHREMV 351

Query: 328 ADLRESFVDEDEVMA 342
           A LR+   +EDE ++
Sbjct: 352 ALLRQQLEEEDESLS 366

May act as a co-chaperone for HSP70.

Danio rerio (taxid: 7955)

>sp|Q5F1R6|DJC21_HUMAN DnaJ homolog subfamily C member 21 OS=Homo sapiens GN=DNAJC21 PE=1 SV=2

 Score =  214 bits (546), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 205/362 (56%), Gaps = 47/362 (12%)

Query: 6   RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
           +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct: 2   KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query: 66  PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
           P+ERAWYD+HR  +L    +       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct: 59  PQERAWYDNHREALLKGGFDGEYQDDSL-DLLRYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query: 126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
           I   E+  V +  +      + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct: 118 IAKEELESVLEEEVD-----DFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query: 185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVM---DMMVKKNEEIE 241
               NR  +R ME+ENKK+R KA++E NE VR+L AF++KRDKRV     ++ ++N E  
Sbjct: 173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDKRVQAHRKLVEEQNAEKA 232

Query: 242 RKREEEKERKKRLEKERMERAKRYEEPAW--------------ARIDDE-GDNEVGNEEG 286
           RK EE + R+++L++ ++   ++Y E +W              AR + E GD    NE  
Sbjct: 233 RKAEEMR-RQQKLKQAKL--VEQYREQSWMTMANLEKELQEMEARYEKEFGDGSDENE-- 287

Query: 287 LEEEEIEKKR--------------SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332
           +EE E++ +                + YC  C K FK+EK   NHE+SKKH+E VA L++
Sbjct: 288 MEEHELKDEEDGKDSDEAEDAELYDDLYCPACDKSFKTEKAMKNHEKSKKHREMVALLKQ 347

Query: 333 SF 334
             
Sbjct: 348 QL 349

May act as a co-chaperone for HSP70.

Homo sapiens (taxid: 9606)

>sp|P53863|JJJ1_YEAST J protein JJJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JJJ1 PE=1 SV=1

 Score =  159 bits (401), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 183/377 (48%), Gaps = 66/377 (17%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           K C YE+LG+    +  E++ AY+K ALQ HPDK   +  +  EAT +F  +  AYEVLS
Sbjct: 2   KTCYYELLGVETHASDLELKKAYRKKALQYHPDK---NPDNVEEATQKFAVIRAAYEVLS 58

Query: 65  DPKERAWYDSHRSQIL---------FSDLNSASNCGPVPN--LYSYFSNTAFSGYSDSGK 113
           DP+ERAWYDSH+ QIL         + D    +    V    L  +F++  ++   +S  
Sbjct: 59  DPQERAWYDSHKEQILNDTPPSTDDYYDYEVDATVTGVTTDELLLFFNSALYTKIDNSAA 118

Query: 114 GFYKVYSDLFNKIYSVEVSYVKKLG----LGLDVLRE----------------------A 147
           G Y++   +F K+   E+   K+LG       DV  +                       
Sbjct: 119 GIYQIAGKIFAKLAKDEILSGKRLGKFSEYQDDVFEQDINSIGYLKACDNFINKTDKLLY 178

Query: 148 PIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKA 207
           P+ G   + Y  +  FY  W  F+T+  F W DEY      +R+++R +   N+K R++A
Sbjct: 179 PLFGYSPTDYEYLKHFYKTWSAFNTLKSFSWKDEYMYSKNYDRRTKREVNRRNEKARQQA 238

Query: 208 KREYNETVRELAAFVKKRDKRVMDMMVKKNEEI--ERKREEEKERKKRL----------- 254
           + EYN+TV+    F+KK DKR     +K+  +I  E+++ +E++RK  L           
Sbjct: 239 RNEYNKTVKRFVVFIKKLDKR-----MKEGAKIAEEQRKLKEQQRKNELNNRRKFGNDNN 293

Query: 255 --EKERMERAKRYEEPAWARIDDEGDN--EVGNEEGLEEEEIEKKRSEFYCVLCGKKFKS 310
             EK  ++  +  +E  W  ++   DN  E  N +  +E E+      + C +C K FKS
Sbjct: 294 DEEKFHLQSWQTVKEENWDELEKVYDNFGEFENSKNDKEGEV----LIYECFICNKTFKS 349

Query: 311 EKQWTNHEQSKKHKEKV 327
           EKQ  NH  +K HK+ +
Sbjct: 350 EKQLKNHINTKLHKKNM 366

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14213|MU185_SCHPO Meiotically up-regulated gene 185 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug185 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 146/325 (44%), Gaps = 43/325 (13%)

Query: 9   YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
           YE+L +  +    EI++ Y+KLALQ HPD+    G+   +    F ++  AY +LS+  +
Sbjct: 11  YEILQVNHDSDLQEIKANYRKLALQYHPDR--NPGIE--DYNEIFSQINAAYNILSNDDK 66

Query: 69  RAWY--DSHRSQ--ILFSD-LNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
           R W+  D  R+Q  +   D L        +P    + S +AF           ++  D  
Sbjct: 67  RKWHEKDYLRNQYSVQIEDVLQHLQTIEKIP----FESTSAFVE---------RLRQD-- 111

Query: 124 NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYD 183
                      +K+    D L   P +G+    +      Y  WL FST   F W   Y+
Sbjct: 112 -----------EKIAGSTDDL---PTLGDTTWLWTYAKPIYQKWLRFSTKKSFEWEALYN 157

Query: 184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMM-VKKNEEIER 242
                +  +RR+M+ +N++  +   + YNE VR+L       D R  +++ +   E    
Sbjct: 158 EEEESDAATRRLMKRQNQRQIQYCIQRYNELVRDLIGKACDLDPRRKNVVKLSDGERYNS 217

Query: 243 KREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCV 302
            +E  +++ +R  ++  E  K     +W  ID E  +   ++E L +E +    +   C+
Sbjct: 218 LQEASRKQSERDRRQYQETFKNQSIASWTIIDQEETS--SDDESLSKEIVNS--NPIMCM 273

Query: 303 LCGKKFKSEKQWTNHEQSKKHKEKV 327
           +C K F+S+ Q  NHE SKKHK+ +
Sbjct: 274 VCNKNFRSQNQLENHENSKKHKKNL 298

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 53/299 (17%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R + T  +I++A+K + L+ HPDK   +G    E     F  +  AYE+LS
Sbjct: 90  YAVLGLGHVRYKATQRQIKAAHKTMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLS 149

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  ++S                 P       F N+  S  S++ + F++V+S +F 
Sbjct: 150 DPVKRRAFNS---------------VDPT------FDNSVPSK-SEAKENFFQVFSPVFE 187

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +S +              +  P +G++ S +  V AFY++W  F +  +F ++DE 
Sbjct: 188 RNSRWSNK--------------KNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEE 233

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIER 242
           +      R  R+ +E++N+  R + K+E    +R L       D R+     K  EE + 
Sbjct: 234 EKEKAECRDERKWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRIK----KFKEEGKA 289

Query: 243 KREEEKERK---KRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGL---EEEEIEKK 295
           K+E EK  K   +R E+E  E+ ++ E  A  R+  E + E   ++ L   +E+EI+KK
Sbjct: 290 KKEAEKRAKAEARRKEQEAKEKQRQAELEA-VRLAKEKEEEEVRQQALLAKKEKEIQKK 347

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Rattus norvegicus (taxid: 10116)

>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 127/281 (45%), Gaps = 64/281 (22%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R + T  +I++A+K + L+ HPDK   +G    E     F  +  A E+LS
Sbjct: 87  YAVLGLAHVRYKATQKQIKAAHKAMVLKHHPDKRKAAGEQIVEGDNDYFTCITKAIEILS 146

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  +DS                 P       F N A    ++  + F++V++ +F 
Sbjct: 147 DPVKRRAFDS---------------VDPT------FDN-AVPTKAEGKENFFEVFAPVFE 184

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +SV+  +              P +G +ES +  V  FY++W  F +  +F ++DE 
Sbjct: 185 RNARWSVKKHF--------------PSLGTMESSFEDVDNFYSFWYNFDSWREFSYLDEE 230

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIER 242
           +      R  RR +E++N+  R + K+E    +R L           +D     +  I++
Sbjct: 231 EKEKAECRDERRWIEKQNRASRAQRKKEEMNRIRTL-----------VDTAYNADPRIKK 279

Query: 243 KREEEKERKKRL----------EKERMERAKRYEEPAWARI 273
            +EEEK RK+            E+E  ERA++ +E A AR+
Sbjct: 280 FKEEEKARKESEKKAKVEAKKREQEEKERARQQQEEA-ARL 319

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation.

Danio rerio (taxid: 7955)

>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 42/227 (18%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R + T  +I++A+K + L+ HPDK   +G    E     F  +  AYE+LS
Sbjct: 90  YAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLS 149

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  ++S                 P       F N+  S  S++   F++V+S +F 
Sbjct: 150 DPVKRRAFNS---------------VDPT------FDNSVPSK-SEAKDNFFEVFSPVFE 187

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +S +              +  P +G++ S +  V AFY++W  F +  +F ++DE 
Sbjct: 188 RNSRWSNK--------------KNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEE 233

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
           +      R  RR +E++N+  R + K+E    +R L       D R+
Sbjct: 234 EKEKAECRDERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRI 280

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Bos taurus (taxid: 9913)

>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 42/227 (18%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R   T  +I++A+K + L+ HPDK   +G    E     F  +  AYE+LS
Sbjct: 90  YAVLGLGHVRYTATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLS 149

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  ++S                 P       F N+  S  S++   F++V+S +F 
Sbjct: 150 DPVKRRAFNS---------------VDPT------FDNSVPSK-SEAKDNFFQVFSPVFE 187

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +S +              +  P +G++ S +  V AFY++W  F +  +F ++DE 
Sbjct: 188 RNSRWSNK--------------KNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEE 233

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
           +      R  R+ +E++N+  R + K+E    +R L       D R+
Sbjct: 234 EKEKAECRDERKWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRI 280

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation (By similarity). Specifically binds DNA sequence 5'-GTCAAGC-3'.

Mus musculus (taxid: 10090)

>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 42/227 (18%)

Query: 9   YEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEA-TAQFQELVHAYEVLS 64
           Y VLGL   R + T  +I++A+K + L+ HPDK   +G    E     F  +  AYE+LS
Sbjct: 90  YAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLS 149

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF- 123
           DP +R  ++S                 P       F N+  S  S++   F++V+S +F 
Sbjct: 150 DPVKRRAFNS---------------VDPT------FDNSVPSK-SEAKDNFFEVFSPVFE 187

Query: 124 -NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEY 182
            N  +S +              +  P +G++ S +  V  FY++W  F +  +F ++DE 
Sbjct: 188 RNSRWSNK--------------KNVPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDEE 233

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
           +      R  RR +E++N+  R + K+E    +R L       D R+
Sbjct: 234 EKEKAECRDERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRI 280

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
449524982	588	PREDICTED: LOW QUALITY PROTEIN: dnaJ hom	0.936	0.897	0.558	1e-146
356511845	620	PREDICTED: dnaJ homolog subfamily C memb	0.948	0.862	0.542	1e-146
449441091	588	PREDICTED: dnaJ homolog subfamily C memb	0.930	0.892	0.559	1e-145
359481801	595	PREDICTED: dnaJ homolog subfamily C memb	0.957	0.907	0.567	1e-144
15221189	630	DNAJ heat shock N-terminal domain-contai	0.863	0.773	0.570	1e-137
255547203	553	conserved hypothetical protein [Ricinus	0.920	0.938	0.569	1e-133
297839305	632	hypothetical protein ARALYDRAFT_339622 [	0.870	0.776	0.560	1e-133
356562611	626	PREDICTED: dnaJ homolog subfamily C memb	0.962	0.867	0.520	1e-132
193848480	618	heat shock protein [Brachypodium distach	0.872	0.796	0.460	7e-95
115488688	607	Os12g0502700 [Oryza sativa Japonica Grou	0.856	0.795	0.439	3e-94

>gi|449524982|ref|XP_004169500.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 21-like [Cucumis sativus]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 318/569 (55%), Positives = 387/569 (68%), Gaps = 41/569 (7%)

Query: 1   MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           MAS KRC YEVLGL  +CT DEIRSAY+KLALQRHPDKLVQSGLSQA+ATAQFQEL HAY
Sbjct: 1   MASAKRCHYEVLGLHIDCTPDEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAY 60

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYS 120
           EVLSDPKERAWYDSHRSQILFSD  S ++   VPNL+ +FSNT +SGYSDSG+GFYK+YS
Sbjct: 61  EVLSDPKERAWYDSHRSQILFSDAGSVNSSSVVPNLFPFFSNTVYSGYSDSGRGFYKIYS 120

Query: 121 DLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
           DLF+KIY  E+++ KKLGL LD++REAP+MGNL+SPY QVTAFYNYWLGF TVMDFCW D
Sbjct: 121 DLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWAD 180

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           +YDVMAGPNRKSRR+MEE+NKKLRKKAKREYNETVR LA FVKKRDKRV+DM +K+N E+
Sbjct: 181 QYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEM 240

Query: 241 ERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFY 300
           E+K+EEE+ERKK LE+E+ME+ + YEEP WA++      EV  +E    EE  ++  E Y
Sbjct: 241 EKKKEEERERKKXLEREKMEKLRTYEEPDWAKV-----EEVEEDEEDVFEEENRRGKELY 295

Query: 301 CVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDE-----------VMADFGELDG 349
           CVLCGKKFKSEKQW NHEQSKKHKEKVA+ +ES  DEDE              +    D 
Sbjct: 296 CVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEGEEETTRQDD 355

Query: 350 EVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDE 409
           EV++LGE FK++  +EE E     GGLSG     SE+ DV +   ++ V +  G  D   
Sbjct: 356 EVDKLGEEFKESFDIEEEET-ESGGGLSG-----SEYDDVHEVDRLDMVGEALGSND--- 406

Query: 410 DEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRK 469
               DDE ++L+AM +G +NRK  A   + E    + H ENE  E    E++N K   R 
Sbjct: 407 ----DDERDILEAMAAGLRNRKSAASVNQPEASPVKPHFENENDEPNPAEFENGK---RG 459

Query: 470 NKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEK 529
            K  R KK G    KG+ +    T+       N   I + SSH      N+  +D +S+K
Sbjct: 460 KKSRRAKKKG----KGNDEAMNETDS-----RNYKTIGDDSSHQQDSTSNSLHNDENSDK 510

Query: 530 DPKIPDQPVDGKGTKKDRKAKLKNSSKGN 558
                 +         DRKA  +N  K N
Sbjct: 511 GASELAKEQRASSKSADRKAVAQNDLKIN 539

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511845|ref|XP_003524632.1| PREDICTED: dnaJ homolog subfamily C member 21-like [Glycine max]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 327/603 (54%), Positives = 411/603 (68%), Gaps = 68/603 (11%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           KRC YEVLGL ++C  DEIRSAY++LALQRHPDKLV+SG+SQ EATAQFQEL HAYEVLS
Sbjct: 8   KRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGISQEEATAQFQELQHAYEVLS 67

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
           DPKERAWYDSHRSQILFSD N+ SN   VP+L+S+FSNT +SGYSD+ KGFYKVYSD+F+
Sbjct: 68  DPKERAWYDSHRSQILFSDPNTVSNSF-VPDLFSFFSNTVYSGYSDTAKGFYKVYSDVFD 126

Query: 125 KIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDV 184
           KI++ E+++ +KLGLG+D +R+AP+MGNL+SPY QVTAFY+YWLGF TVMDFCWVDEYDV
Sbjct: 127 KIHANEINFARKLGLGVDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDEYDV 186

Query: 185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKR 244
           MAGPNRKSRR+MEEEN K R+KA+REYN+TVR L  FVKKRDKRV+DM VK++ E ERK+
Sbjct: 187 MAGPNRKSRRLMEEENNKARRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEERKK 246

Query: 245 EEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLC 304
           E+E+ER++RLEKER ERA  YEEP WA+++++       EE +EE E  +   EFYCVLC
Sbjct: 247 EDERERRRRLEKERKERAMAYEEPEWAKVEED------EEEVVEEVEERENEKEFYCVLC 300

Query: 305 GKKFKSEKQWTNHEQSKKHKEKVADLRESF-------------------VDEDEVMADFG 345
            KKFKSEKQW NHEQSKKHKE+VA+ R+S                     +ED+V  +  
Sbjct: 301 KKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEEDLEEEEEEEGKEGLESEEDQVGVN-D 359

Query: 346 ELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFD---VADGVEVN-EVDDR 401
           E+D  + +L  R +D V VEE E  +G+    GD     EFFD   V +G E N +V+ R
Sbjct: 360 EIDNGIGDLEARIRDGVNVEEGETRNGIELNDGD-----EFFDASRVKEGEEANVKVNFR 414

Query: 402 FGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYD 461
           +   DE      DDE  +L+AM++GHKNRK  A   + +     + +ENE  E    EY+
Sbjct: 415 YDGNDE------DDENGVLEAMVAGHKNRKPRASAHKPKASVAPSPIENENDELGSKEYN 468

Query: 462 NCKSTRRKN--KKDRGKK----SGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCV 515
           N K  R+K   KK++G+K    S G A+ GD +   S     NG+ NS   EES S   V
Sbjct: 469 NRKGARKKRGAKKEKGRKNWEESQGAASSGDYENINS-----NGNDNSHA-EESCSQHFV 522

Query: 516 GNKNNGISDNHSEKDPKIPD--------------QPVDGKGTKKDRKAKLKNSSKGNKTK 561
            N++NGI +    +D KI +              QP D KG  KD K K K SSKG K K
Sbjct: 523 ENEDNGIENEQVGRDDKISNQPADKKGRDKNISHQPADTKGAGKDTKTKAKVSSKGRKGK 582

Query: 562 AST 564
            ++
Sbjct: 583 VTS 585

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441091|ref|XP_004138317.1| PREDICTED: dnaJ homolog subfamily C member 21-like [Cucumis sativus]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 320/572 (55%), Positives = 388/572 (67%), Gaps = 47/572 (8%)

Query: 1   MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           MAS KRC YEVLGL  +CT DEIRSAY+KLALQRHPDKLVQSGLSQA+ATAQFQEL HAY
Sbjct: 1   MASAKRCHYEVLGLHIDCTPDEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAY 60

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYS 120
           EVLSDPKERAWYDSHRSQILFSD  S ++   VPNL+ +FSNT +SGYSDSG+GFYK+YS
Sbjct: 61  EVLSDPKERAWYDSHRSQILFSDAGSVNSSSVVPNLFPFFSNTVYSGYSDSGRGFYKIYS 120

Query: 121 DLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
           DLF+KIY  E+++ KKLGL LD++REAP+MGNL+SPY QVTAFYNYWLGF TVMDFCW D
Sbjct: 121 DLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWAD 180

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           +YDVMAGPNRKSRR+MEE+NKKLRKKAKREYNETVR LA FVKKRDKRV+DM +K+N E+
Sbjct: 181 QYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEM 240

Query: 241 ERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFY 300
           E+K+EEE+ERKKRLE+E+ME+ + YEEP WA++      EV  +E    EE  ++  E Y
Sbjct: 241 EKKKEEERERKKRLEREKMEKLRTYEEPDWAKV-----EEVEEDEEDVFEEENRRGKELY 295

Query: 301 CVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDE-----------VMADFGELDG 349
           CVLCGKKFKSEKQW NHEQSKKHKEKVA+ +ES  DEDE              +    D 
Sbjct: 296 CVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEGEEETTRQDD 355

Query: 350 EVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDE 409
           EV++LGE FK++  +EE E     GGLSG     SE+ DV +    + V +  G  D   
Sbjct: 356 EVDKLGEEFKESFDIEEEET-ESGGGLSG-----SEYDDVHEVDRSDMVGEALGSND--- 406

Query: 410 DEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRK 469
               DDE ++L+AM +G +NRK  A   + E    + H ENE  E    E++N K   R 
Sbjct: 407 ----DDERDILEAMAAGLRNRKSAASVNQPEASPVKPHFENENDEPNPAEFENGK---RG 459

Query: 470 NKKDRGKKSGGEAAKGDRDGFKST---NEEANGHHNSGVIEESSSHSCVGNKNNGISDNH 526
            K  R KK G    KG+ +    T   N + NG        + SSH      N+  +D +
Sbjct: 460 KKSRRAKKKG----KGNDEAMNETDSRNYKTNG--------DDSSHQQDSTSNSLHNDEN 507

Query: 527 SEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGN 558
           S+K      +         DRKA  +N  K N
Sbjct: 508 SDKGASELAKEQRASSKSADRKAVAQNDLKIN 539

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481801|ref|XP_002278802.2| PREDICTED: dnaJ homolog subfamily C member 21-like [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 330/581 (56%), Positives = 407/581 (70%), Gaps = 41/581 (7%)

Query: 1   MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           MASE RCLYEVLGL  + T DEIRSAYKKLALQRHPDKLV SGLS+A+ATAQFQEL++AY
Sbjct: 1   MASEGRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKLVHSGLSKADATAQFQELLNAY 60

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYS 120
           EVLS+P+ERAWYDSHRSQILFS  N  S+ G VPNL+S+FSN+ +SGY D+ KGFYKVYS
Sbjct: 61  EVLSNPEERAWYDSHRSQILFS--NPTSSNGSVPNLFSFFSNSVYSGYDDTRKGFYKVYS 118

Query: 121 DLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
           ++F+KIY+ EV++ KKLGLG   ++EAP+MGNLESPY QVTAFY YW+GFSTVMDF WVD
Sbjct: 119 EVFDKIYATEVNFAKKLGLG--SIKEAPMMGNLESPYSQVTAFYGYWIGFSTVMDFAWVD 176

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           EYDV AGPNRKSRR+MEEEN+KLRKKAKREYNETVR LA FVK+RDKRV+DM VKK+ E 
Sbjct: 177 EYDVRAGPNRKSRRLMEEENRKLRKKAKREYNETVRGLAKFVKRRDKRVIDMQVKKSLEE 236

Query: 241 ERKREEEKERK-KRLEKERMERAKRYEEPAWAR-IDDEGDNEVGNEEGLEEEEI---EKK 295
           E+++EEEK RK +  E+ R+ERA+   EP W R ++D+     GN++  E E+     K+
Sbjct: 237 EKRKEEEKTRKWEEFERGRLERARAKVEPEWVRAVEDD-----GNDDDWEFEDAGGGRKE 291

Query: 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMAD-----FGELDGE 350
             EFYCVLC KKFKSEKQW NHE+SKKHKE VA+ RES  +EDE   D      G  D  
Sbjct: 292 EEEFYCVLCRKKFKSEKQWKNHEKSKKHKEWVAEFRESVKEEDERYGDAEAGIHGNGDQS 351

Query: 351 VEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEV-NEVDDRFGKEDEDE 409
             EL E+F+D + +EE EI  G    S +E    E F V D     N  +   G      
Sbjct: 352 EVELQEQFEDGLELEEEEIEDGAQIESSNE----EEFVVGDVSHSGNGTNAELG------ 401

Query: 410 DEDADDEVNMLKAMLSGHKNRKR----VAVRKEDEVLKTEAHVENEIGESEFMEYDN-CK 464
              +DDE+++L+AMLSGHKNRK     VA   E E   TEA V+    E +FMEYDN   
Sbjct: 402 ---SDDEMSVLEAMLSGHKNRKNGKTAVASVLEPESSVTEAPVDINNDEMDFMEYDNRKS 458

Query: 465 STRRKNKKDRGKKSGGEAAKGDRD-GFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGIS 523
           S RR+ KKD+GK+S GEA K D   G K   +E N   ++  I++SS++S   N+ +G  
Sbjct: 459 SRRRRGKKDKGKRSNGEAMKPDSSTGDKGGQDEQNSGSDASHIQDSSTYSVAENETDGKE 518

Query: 524 DNHSEKDPKIPDQPVDGKGTKK-DRKAKLKNSSKGNKTKAS 563
           D+H+E + KIP QPV+ K T K +   K K S+K  K K +
Sbjct: 519 DHHAETN-KIPKQPVNRKATSKGEIDTKPKESNKVRKAKVA 558

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221189|ref|NP_177565.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|12324903|gb|AAG52405.1|AC020579_7 putative heat shock protein; 32627-30541 [Arabidopsis thaliana] gi|332197449|gb|AEE35570.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 301/528 (57%), Positives = 376/528 (71%), Gaps = 41/528 (7%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYE 61
           SEKRC YEVLG+ KE + DEIRS+Y++LALQRHPDKL+++ GLS+AEATAQFQELVHAYE
Sbjct: 7   SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAAGLSEAEATAQFQELVHAYE 66

Query: 62  VLSDPKERAWYDSHRSQILFSD---LNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKV 118
           VLSDPKERAWYDSHRSQILF+D      + + G VP+L+++FS T +SGYSD+GKGFYKV
Sbjct: 67  VLSDPKERAWYDSHRSQILFADHSSAGGSKSGGSVPDLFAFFSPTVYSGYSDTGKGFYKV 126

Query: 119 YSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCW 178
           Y D+FN +Y  E+ + + LGL +D +REAPIMGNLESPY QVTAFYNYWLGF TVMDFCW
Sbjct: 127 YYDVFNSVYLNEIKFARTLGLRMDSVREAPIMGNLESPYAQVTAFYNYWLGFCTVMDFCW 186

Query: 179 VDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNE 238
           VDEYDVM GPNRKSRR+MEEENKK RKKAKREYN+TVR LA FVKKRDKRV+DM+VKKN 
Sbjct: 187 VDEYDVMGGPNRKSRRMMEEENKKSRKKAKREYNDTVRGLAEFVKKRDKRVIDMLVKKNA 246

Query: 239 EIERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRS- 297
           E+E+K+EEE+ERKK++EKER+ERA  YEEP WA+   EG++E      LEEE+ + KR  
Sbjct: 247 EMEKKKEEERERKKKMEKERLERAMNYEEPEWAKA-HEGEDEGAGLSELEEEDDDAKRKN 305

Query: 298 -EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADF---GELDG--EV 351
            + YC++C KKFKSEKQW NHEQSKKHKEKVA+LRESF D +E   +    G LD    V
Sbjct: 306 EQLYCIVCSKKFKSEKQWKNHEQSKKHKEKVAELRESFTDYEEENEEEEIDGPLDSPESV 365

Query: 352 EELGERFKD--NVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDED- 408
           EEL E+ ++  N+  EER++   V G                  E +E DD +   +ED 
Sbjct: 366 EELHEKLQEELNIDNEERDVKKEVVG------------------EADETDDEYFVAEEDM 407

Query: 409 ----EDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCK 464
               E ED DDE+ +LK M+SG KN+++  V KE++  +TE  +E +   +EF E+DN K
Sbjct: 408 QGSSESEDEDDEMTLLKKMVSGQKNKQKNVVSKEEDEDETEVEIEGDT--AEFSEFDNQK 465

Query: 465 STRRKN--KKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESS 510
           ST R    K++R K++ G     D    +   E  N   N    E +S
Sbjct: 466 STGRNKEAKEERNKQNAGNDMADDTSKVQIPGEGGNPDENMNATESAS 513

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547203|ref|XP_002514659.1| conserved hypothetical protein [Ricinus communis] gi|223546263|gb|EEF47765.1| conserved hypothetical protein [Ricinus communis]

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 327/574 (56%), Positives = 396/574 (68%), Gaps = 55/574 (9%)

Query: 2   ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           ASEKRC YEVLGL ++C+ DEIR+AYKKLALQRHPDKL++SGLSQ+EATAQFQEL  AYE
Sbjct: 3   ASEKRCHYEVLGLSRDCSPDEIRAAYKKLALQRHPDKLIKSGLSQSEATAQFQELSQAYE 62

Query: 62  VLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSD 121
           +LSDPKERAWYDSHRSQILFS+ N  S+   +PN                          
Sbjct: 63  ILSDPKERAWYDSHRSQILFSNPNDVSS-SVIPNF------------------------- 96

Query: 122 LFNKIYSVEVSYVKKLGLGL-DVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVD 180
              KIY+ EVS+ KKLGLGL + +RE P+MGNLESPY QVTAFYNYWLGF TVMDFCWVD
Sbjct: 97  ---KIYANEVSFCKKLGLGLENNVREMPLMGNLESPYEQVTAFYNYWLGFVTVMDFCWVD 153

Query: 181 EYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEI 240
           +YDVMAG NRKSRRVMEEENKKLRKKA+REYNETVR LA FVKKRDKRV+DMMVKKN E+
Sbjct: 154 QYDVMAGVNRKSRRVMEEENKKLRKKARREYNETVRGLAEFVKKRDKRVIDMMVKKNTEM 213

Query: 241 ERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRS--- 297
           E+++EEE+ERKK+LE+ER+ERA+ YEEP WAR+++E   +V + E   EEE+E K+    
Sbjct: 214 EKRKEEERERKKKLERERIERARAYEEPEWARVNEE---DVEDIEEFHEEEMENKKGNGG 270

Query: 298 -EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDG------- 349
            E YCV+CGKKFKSEKQW NHEQSKKHKEKVA+LRESF  EDE   + G  DG       
Sbjct: 271 KELYCVVCGKKFKSEKQWKNHEQSKKHKEKVAELRESFESEDE---NDGYFDGVEEDNHE 327

Query: 350 -EVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDED 408
             V+E+ ERFKD V + + E G     L   ED    FFD  D  E+   +   G  DED
Sbjct: 328 HNVDEVEERFKDGVRITDEENGVENPELINKED---GFFDAEDFDEMEGSNVEDGNGDED 384

Query: 409 EDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRR 468
           + ED D E+++L+AM++GHK+RK    R   E   TE HV++   E    EY+N K+ RR
Sbjct: 385 DVEDGDAEMSILEAMVTGHKSRKSRKARHLGEHFPTEVHVDDVNEEPNVTEYNNRKTRRR 444

Query: 469 KNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSE 528
           K KKDRGK  G   A+GD D  KS +++  G  +    EE SSHS V N+N+G  ++H  
Sbjct: 445 KGKKDRGKSDGRVPARGDFDE-KSPDDKIEGLDDKRT-EEFSSHSFVENENDGNINDHLR 502

Query: 529 KDPKIPDQPVDG-KGTKKDRKAKLKNSSKGNKTK 561
           K+ +  DQPVD  +  KK+   K  NSSKG K K
Sbjct: 503 KNHR-SDQPVDNQRAKKKESNTKSNNSSKGKKGK 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839305|ref|XP_002887534.1| hypothetical protein ARALYDRAFT_339622 [Arabidopsis lyrata subsp. lyrata] gi|297333375|gb|EFH63793.1| hypothetical protein ARALYDRAFT_339622 [Arabidopsis lyrata subsp. lyrata]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 295/526 (56%), Positives = 377/526 (71%), Gaps = 35/526 (6%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSG-LSQAEATAQFQELVHAYE 61
           SEKRC YEVLG+ KE + DEIRS+Y++LALQRHPDKL+++G LS+AEATAQFQELVHAYE
Sbjct: 7   SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAGGLSEAEATAQFQELVHAYE 66

Query: 62  VLSDPKERAWYDSHRSQILFSDLNSASNC-------GPVPNLYSYFSNTAFSGYSDSGKG 114
           VLSDPKERAWYDSHRSQILF+D +SA          G VP+L+++F+ T +SGYSD GKG
Sbjct: 67  VLSDPKERAWYDSHRSQILFADHSSAGGSKSGGMPGGSVPDLFAFFTPTVYSGYSDIGKG 126

Query: 115 FYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVM 174
           FYKVY D+FN +Y  E+ + + LGL +D +REAPIMGNLESPY QVTAFYNYWLGFSTVM
Sbjct: 127 FYKVYYDVFNSVYLNEIKFARTLGLRMDSVREAPIMGNLESPYAQVTAFYNYWLGFSTVM 186

Query: 175 DFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMV 234
           DFCWVDEYDVMAGPNRKSRR+MEEENKK+RKKAKREYNETVR LA FVKKRDKRV+DMMV
Sbjct: 187 DFCWVDEYDVMAGPNRKSRRLMEEENKKVRKKAKREYNETVRGLAEFVKKRDKRVIDMMV 246

Query: 235 KKNEEIERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEK 294
           KKN E+E+K+EEE+ERKK++EKER+ERA  YEEP WA+   EG+ E      LEEE+ + 
Sbjct: 247 KKNAEMEKKKEEERERKKKMEKERLERAMNYEEPEWAKA-QEGEEEGAGFNVLEEEDDDA 305

Query: 295 KRS--EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDG--- 349
           KR   + YC++C KKFKSEKQW NHEQSKKHKEKVA+LRESF D +E + +  E DG   
Sbjct: 306 KRKNEQLYCIVCSKKFKSEKQWRNHEQSKKHKEKVAELRESFTDYEEEIEE-EETDGPLK 364

Query: 350 ---EVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKED 406
               VEEL E+ ++ + +++ E       +   ++ + E+F VA+       +D  G   
Sbjct: 365 PPESVEELHEKLQEELNIDDEENDVEDEVVGEADETDEEYF-VAE-------EDMKGSS- 415

Query: 407 EDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKST 466
             E ED DDE+ +LK M+SG K +++ AV KE++ ++ E   +     +EF E D  K+T
Sbjct: 416 --ESEDEDDEMTLLKKMVSGQKKKRKNAVSKEEDEIEVEIESDT----AEFSEVDYQKNT 469

Query: 467 RRKN--KKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESS 510
            R    K++R K++ G+    D    +   ++ N   N    + +S
Sbjct: 470 GRNKEAKEERNKQNAGKDMADDTSKVQVPGDDGNPDENVNATDSAS 515

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562611|ref|XP_003549563.1| PREDICTED: dnaJ homolog subfamily C member 21-like [Glycine max]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 316/607 (52%), Positives = 409/607 (67%), Gaps = 64/607 (10%)

Query: 2   ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           ++ KRC YEVLGL ++C  DEIRSAY++LALQRHPDKLV+SGLSQ EATAQFQEL HAYE
Sbjct: 5   SAAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYE 64

Query: 62  VLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSD 121
           VLSDPKERAWYDSHRSQILFSD N+ SN   VP+L+S+FSNT +SGY+++ KGFYKVYSD
Sbjct: 65  VLSDPKERAWYDSHRSQILFSDPNTVSNSF-VPDLFSFFSNTVYSGYTNTAKGFYKVYSD 123

Query: 122 LFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDE 181
           +F+KI++ E+++ +KLGL  D +R+AP+MGNL+SPY QVTAFY+YWLGF TVMDFCWVDE
Sbjct: 124 VFDKIHANEINFARKLGLDSDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDE 183

Query: 182 YDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIE 241
           YDVMAGPNRKSRR+MEEEN K+R+KA+REYN+TVR L  FVKKRDKRV+DM VK++ E E
Sbjct: 184 YDVMAGPNRKSRRIMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEE 243

Query: 242 RKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYC 301
           RK+EEE+ERK+RLEKE+ ERA  YEEP WA+       +   EE +EEE  E++  E YC
Sbjct: 244 RKKEEERERKRRLEKEKKERAMAYEEPEWAK------VDEDVEEVVEEEVEERENEELYC 297

Query: 302 VLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVM------------ADFG---E 346
           VLC KKFKS+KQW NHEQSKKHKE+VA+ R S  D++E +            A+ G   E
Sbjct: 298 VLCKKKFKSDKQWKNHEQSKKHKERVAEFRGSIGDDEEDLEEEEEGEEGLESAEVGVNDE 357

Query: 347 LDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVA-------DGVEVNEVD 399
            D  + +L  R K+ + VEE E  +G+  L+ D+    EF D +        GV V+  D
Sbjct: 358 TDNGIGDLEARIKNGLNVEEGETRNGI-ELNDDD----EFIDASRVKEGEEAGVSVS-FD 411

Query: 400 DRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEF-- 457
           +   +E+E+E+E+ D E  +L+AM++GHKNRK  A   + +       +ENE  + E   
Sbjct: 412 EDGNEEEEEEEEEGDIENGVLEAMVAGHKNRKPRASTHKPKTSVAPLPIENE-NDDELGP 470

Query: 458 MEYDN------CKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSS 511
           MEY+N       +  +++  +   ++S   AA GD +   S N   N H      EESSS
Sbjct: 471 MEYNNQKGARKKRRAKKEKGRKNWEESQEAAASGDYEDIIS-NANDNSH-----AEESSS 524

Query: 512 HSCVGNKNNGISDNHSEKDPKIPDQP--------------VDGKGTKKDRKAKLKNSSKG 557
              + N++NGI +    +D KI +QP               D KG  KD K K K SSKG
Sbjct: 525 QHFMENEDNGIENEQVGRDEKISNQPADKKGRDKNISQQAADKKGAGKDTKTKAKVSSKG 584

Query: 558 NKTKAST 564
            K K ++
Sbjct: 585 RKGKVAS 591

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193848480|gb|ACF22672.1| heat shock protein [Brachypodium distachyon]

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 242/526 (46%), Positives = 340/526 (64%), Gaps = 34/526 (6%)

Query: 2   ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           A+ KRC YE+LGL ++C+  +I+ A+++LAL  HPDK    G   A ATA FQEL HA+ 
Sbjct: 4   AAPKRCYYEILGLSRDCSPTDIKLAFRRLALSLHPDKQA-PGSDLAAATAAFQELQHAHS 62

Query: 62  VLSDPKERAWYDSHRSQILFSDLNSA--SNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVY 119
           VLSDP+ERA+YDSHRSQILF+D  S+   +  PVP+L+S+FS +AFSG+SDSG+GFYKVY
Sbjct: 63  VLSDPQERAYYDSHRSQILFADPVSSRSGSASPVPDLFSFFSTSAFSGFSDSGRGFYKVY 122

Query: 120 SDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWV 179
            DLF+K+++ EV+Y +++G+  D +   P++GNL+SPY QVTAFY YWLGF +VMDF W 
Sbjct: 123 GDLFDKVFAQEVTYARRMGIPTDSIPTPPVIGNLDSPYTQVTAFYAYWLGFGSVMDFGWA 182

Query: 180 DEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEE 239
            E+D   G NR++RR+MEE+NKK  +KA+REYN+ VR LAAF KKRDKRV+DM ++K  E
Sbjct: 183 AEWDAARGENRRTRRLMEEDNKKAMRKARREYNDAVRGLAAFCKKRDKRVVDMALQKKAE 242

Query: 240 IERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEF 299
            E+K++EE ERKK  E+++ ERA  Y+EP WAR++++   E+  EE  +EE + K++ E 
Sbjct: 243 EEKKKKEEMERKKAEERKKKERAMTYQEPEWARVNED---EIVFEEEDDEEMMAKRKEEL 299

Query: 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELD-GEVEELGERF 358
           YCV C KKFKSEKQW NHEQSKKHK+KVA+LR +F +E+E + +      GE EE+   F
Sbjct: 300 YCVACNKKFKSEKQWKNHEQSKKHKDKVAELRMAFKEEEEALKEAEAAAGGEWEEVDVGF 359

Query: 359 KDNVG---------------VEEREIGSGVGG-LSGDEDVES--EFFDVADGVEVNEVDD 400
                                EE ++G  VG    GD+D +S        +G++V   +D
Sbjct: 360 DFKPANESDESDWSDAAEELAEELDVGLDVGNEEDGDKDFDSGEPVVGSYEGLDVGNEED 419

Query: 401 RFGKEDEDEDED---ADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEF 457
             G +D D  E    + DE ++L+AMLS  KN+K   V  ++EV  + +  +N    S  
Sbjct: 420 --GDKDFDSGEPVVGSYDETSVLEAMLSSRKNKKSGYVVPQEEVPPSVSEDDNADDTSSA 477

Query: 458 MEYDNCKSTRRK-NKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHN 502
           +     K  RR+ +KK +   S  E  +G +    +   E +GH N
Sbjct: 478 VNTVKKKGRRRRASKKGQDDVSYAENGQGTK---TNVPHEESGHDN 520

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115488688|ref|NP_001066831.1| Os12g0502700 [Oryza sativa Japonica Group] gi|108862715|gb|ABA98642.2| DnaJ domain containing protein, expressed [Oryza sativa Japonica Group] gi|113649338|dbj|BAF29850.1| Os12g0502700 [Oryza sativa Japonica Group]

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 227/517 (43%), Positives = 332/517 (64%), Gaps = 34/517 (6%)

Query: 2   ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           A+ KRC YEVLG+ ++C+  +I+ A+++LAL  HPDK    G   A ATA FQEL HA+ 
Sbjct: 5   AAPKRCYYEVLGVPRDCSPADIKLAFRRLALSLHPDKQ-PPGSDVAAATAAFQELQHAHS 63

Query: 62  VLSDPKERAWYDSHRSQILFSDLN-----------SASNCGPVPNLYSYFSNTAFSGYSD 110
           VLSDP ER++YDSHRSQILFSD +           ++++  PVP+L+++FS++AFSG+SD
Sbjct: 64  VLSDPHERSYYDSHRSQILFSDHHPSSGPGRGGGVASASASPVPDLFAFFSSSAFSGFSD 123

Query: 111 SGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGF 170
           SG+GFYKVY D+F+++++ E++Y +++G+  D +   P++GNL+SP+ QV AFY+YWLGF
Sbjct: 124 SGRGFYKVYGDVFDRVFAQELAYARRMGMPADAVPTPPVIGNLDSPHAQVAAFYSYWLGF 183

Query: 171 STVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVM 230
            T MDF W  E+D   G +R+ RR+MEE+NKK  +KA+REYN+ VR LAAF KKRDKRV+
Sbjct: 184 GTAMDFGWAAEWDAARGESRRVRRLMEEDNKKATRKARREYNDAVRGLAAFCKKRDKRVV 243

Query: 231 DMMVKKNEEIERKREEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEE 290
           DM +KK  E E+++ EE  RKK  E+ R ERA  Y+EP WAR+D+  D     E+  EEE
Sbjct: 244 DMALKKKVEEEKRKAEEAARKKEEERRRKERAMAYQEPEWARVDE--DEAAVFEDDEEEE 301

Query: 291 EIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGE 350
              K++ E YCV C KKFKS+KQW NHEQSKKH++KV++LR  F +E+E + D  E + E
Sbjct: 302 TRAKRKEELYCVACNKKFKSDKQWKNHEQSKKHRDKVSELRMVFEEEEEALKDAEEEEPE 361

Query: 351 VEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFD-VADGVEVNEVDDRFGKE--DE 407
             ++G  F+     EE E            D   E  D +++G+EV + +++  K   + 
Sbjct: 362 EVDVGFDFQPAQESEESEFS----------DAAEELADELSEGLEVRDEEEKGDKHLGNG 411

Query: 408 DEDEDADDEVNMLKAML--SGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKS 465
           ++   + DE ++L+ ML  S  KNRK   V  ++E     A  +++  ++ + E +N K 
Sbjct: 412 EQKVGSYDETSVLEEMLSRSRRKNRKSGFVAPQEEASPAGAMDDDDDEDTSY-EINNVK- 469

Query: 466 TRRKNKKDRGKKSGGEAAKGDRDGFKSTNEEANGHHN 502
             +K ++ R  K GG  A   + G KS N+     HN
Sbjct: 470 --KKGRRRRAAKKGGTYADNGQ-GRKSENQPEESRHN 503

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
TAIR|locus:2019647	630	AT1G74250 [Arabidopsis thalian	0.962	0.861	0.477	1.1e-126
ZFIN|ZDB-GENE-030131-8928	545	dnajc21 "DnaJ (Hsp40) homolog,	0.382	0.396	0.451	2.3e-60
UNIPROTKB|E1C4H3	537	DNAJC21 "Uncharacterized prote	0.379	0.398	0.431	1.7e-58
UNIPROTKB|F1LPX6	533	Dnajc21 "Protein Dnajc21" [Rat	0.381	0.403	0.444	3.3e-57
UNIPROTKB|E2QZB7	532	DNAJC21 "Uncharacterized prote	0.381	0.404	0.435	8.8e-57
UNIPROTKB|Q5F1R6	531	DNAJC21 "DnaJ homolog subfamil	0.381	0.404	0.435	1.8e-56
UNIPROTKB|Q0II91	533	DNAJC21 "DnaJ homolog subfamil	0.381	0.403	0.44	9.9e-56
UNIPROTKB|F1SND3	533	DNAJC21 "Uncharacterized prote	0.381	0.403	0.442	5.4e-55
DICTYBASE|DDB_G0286579	633	dnaja5 "DnaJ homolog subfamily	0.397	0.353	0.395	5.1e-53
FB|FBgn0027599	540	CG2790 [Drosophila melanogaste	0.377	0.394	0.427	6e-53

TAIR|locus:2019647 AT1G74250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 274/574 (47%), Positives = 350/574 (60%)

Query:     3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYE 61
             SEKRC YEVLG+ KE + DEIRS+Y++LALQRHPDKL+++ GLS+AEATAQFQELVHAYE
Sbjct:     7 SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAAGLSEAEATAQFQELVHAYE 66

Query:    62 VLSDPKERAWYDSHRSQILFSDLNSASNC---GPVPNLYSYFSNTAFSGYSDSGKGFYKV 118
             VLSDPKERAWYDSHRSQILF+D +SA      G VP+L+++FS T +SGYSD+GKGFYKV
Sbjct:    67 VLSDPKERAWYDSHRSQILFADHSSAGGSKSGGSVPDLFAFFSPTVYSGYSDTGKGFYKV 126

Query:   119 YSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCW 178
             Y D+FN +Y  E+ + + LGL +D +REAPIMGNLESPY QVTAFYNYWLGF TVMDFCW
Sbjct:   127 YYDVFNSVYLNEIKFARTLGLRMDSVREAPIMGNLESPYAQVTAFYNYWLGFCTVMDFCW 186

Query:   179 VDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVXXXX 238
             VDEYDVM GPNRKSRR+MEEENKK RKKAKREYN+TVR LA FVKKRDKRV+DM+V    
Sbjct:   187 VDEYDVMGGPNRKSRRMMEEENKKSRKKAKREYNDTVRGLAEFVKKRDKRVIDMLVKKNA 246

Query:   239 XXXXXXXXXXXXXXXXXXXXXXXXXXYEEPAWARXXXXXXXXXXXXXXXXXXXXXKKRSE 298
                                       YEEP WA+                     K+++E
Sbjct:   247 EMEKKKEEERERKKKMEKERLERAMNYEEPEWAKAHEGEDEGAGLSELEEEDDDAKRKNE 306

Query:   299 -FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVD------EDEVMADFXXXXXXX 351
               YC++C KKFKSEKQW NHEQSKKHKEKVA+LRESF D      E+E+           
Sbjct:   307 QLYCIVCSKKFKSEKQWKNHEQSKKHKEKVAELRESFTDYEEENEEEEIDGPLDSPESVE 366

Query:   352 XXXXXRFKD-NVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKXXXXXX 410
                    ++ N+  EER++   V G   DE  + E+F VA+       +D  G       
Sbjct:   367 ELHEKLQEELNIDNEERDVKKEVVG-EADE-TDDEYF-VAE-------EDMQGSSESEDE 416

Query:   411 XXXXXXVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKN 470
                   + +LK M+SG KN+++  V KE++  +TE  +E +   +EF E+DN KST R  
Sbjct:   417 DDE---MTLLKKMVSGQKNKQKNVVSKEEDEDETEVEIEGDT--AEFSEFDNQKSTGRNK 471

Query:   471 --KKDRGKKSGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSE 528
               K++R K++ G     D    +   E  N   N    E +S       K+   S  +  
Sbjct:   472 EAKEERNKQNAGNDMADDTSKVQIPGEGGNPDENMNATESASGALADSQKDEANSMEYDN 531

Query:   529 KDPKIPDQPVDGKGTKKDRKAKL-KNSSKGNKTK 561
             +      +    KG  K+ + +L + SS+ + T+
Sbjct:   532 RK-STGRRRRSKKGKDKNNQGELNEKSSEADDTQ 564

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

ZFIN|ZDB-GENE-030131-8928 dnajc21 "DnaJ (Hsp40) homolog, subfamily C, member 21" [Danio rerio (taxid:7955)]

 Score = 484 (175.4 bits), Expect = 2.3e-60, Sum P(3) = 2.3e-60
 Identities = 102/226 (45%), Positives = 138/226 (61%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEVLS 64
             +C YEVLG++++ + D+++ AY+KLAL+ HPDK     L  AE A  QF+ +  AY+VLS
Sbjct:     2 KCHYEVLGVKRDASDDDLKKAYRKLALKWHPDK----NLDNAEDAAEQFKLIQAAYDVLS 57

Query:    65 DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
             DP+ERAWYD+HR  +L   ++       + +L  +F+ T +SGY D  KGFY VY ++F 
Sbjct:    58 DPQERAWYDNHREALLKGGVSGEYQDDSI-DLVQFFTVTCYSGYGDDEKGFYAVYRNVFE 116

Query:   125 KIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYD 183
              I   E  + K      D   E P  G  ES Y  V   FY YW  F T  +F W +EYD
Sbjct:   117 SIVKEEKEHSKDEE---DEEDEFPSFGESESDYDTVVHLFYGYWQSFCTRKNFAWKEEYD 173

Query:   184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                  NR  +R ME+ENKK R KA++E+NE VR+L AFV+KRDKRV
Sbjct:   174 TRQASNRWEKRAMEKENKKTRDKARKEHNELVRQLVAFVRKRDKRV 219

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C4H3 DNAJC21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 472 (171.2 bits), Expect = 1.7e-58, Sum P(3) = 1.7e-58
 Identities = 97/225 (43%), Positives = 138/225 (61%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             RC YEVLG+R++   +E++ AY++LAL+ HPDK +++     EA  QF+ +  AY+VLSD
Sbjct:     2 RCHYEVLGVRRDAAEEELKRAYRRLALRWHPDKNLENA---EEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L   +N       + +L  YF+ + +SGY D  KGF+ VY  +F +
Sbjct:    59 PQERAWYDNHREALL-RGVNGDYQDDSL-DLLRYFTVSCYSGYGDDEKGFFTVYRHVFEQ 116

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+ Y+       + + E P  G   S Y  +   FY YW  F T  +F W +EYD 
Sbjct:   117 IAKEEMEYITH-----EDIEEFPTFGYSHSDYDTIVHPFYAYWQSFCTQKNFAWKEEYDT 171

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK R KAK+E NE VR+L AF++KRD+RV
Sbjct:   172 RQASNRWEKRAMEKENKKTRDKAKKERNELVRQLVAFIRKRDRRV 216

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LPX6 Dnajc21 "Protein Dnajc21" [Rattus norvegicus (taxid:10116)]

 Score = 487 (176.5 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
 Identities = 100/225 (44%), Positives = 140/225 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALRWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY D+F  
Sbjct:    59 PQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYAVYRDVFAL 117

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+  + + G       + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct:   118 IAKEELECMSEGGA-----EDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK+R KA++E NE VR+L AF++KRDKRV
Sbjct:   173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDKRV 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2QZB7 DNAJC21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 483 (175.1 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 98/225 (43%), Positives = 140/225 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct:    59 PQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+  V +     + + + P  G+ +S Y  V   FY YW  F T   F W +EYD 
Sbjct:   118 IAKEELESVLE-----EEMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKSFAWKEEYDT 172

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK+R KA++E NE VR+L AF++KRD+RV
Sbjct:   173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRV 217

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q5F1R6 DNAJC21 "DnaJ homolog subfamily C member 21" [Homo sapiens (taxid:9606)]

 Score = 480 (174.0 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
 Identities = 98/225 (43%), Positives = 140/225 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L    +       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct:    59 PQERAWYDNHREALLKGGFDGEYQDDSL-DLLRYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+  V +     + + + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct:   118 IAKEELESVLE-----EEVDDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK+R KA++E NE VR+L AF++KRDKRV
Sbjct:   173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDKRV 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=NAS

GO:0005840 "ribosome" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0II91 DNAJC21 "DnaJ homolog subfamily C member 21" [Bos taurus (taxid:9913)]

 Score = 480 (174.0 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 99/225 (44%), Positives = 141/225 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             +C YE LG+R++ + +E++ AY+KLAL+ HPDK + +    AEA  QF+ +  AY+VLSD
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNA---AEAAEQFKLIQAAYDVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNK 125
             P+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY ++F  
Sbjct:    59 PQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYTVYRNVFEM 117

Query:   126 IYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYDV 184
             I   E+    +  L  D + + P  G+ +S Y  V   FY YW  F T  +F W +EYD 
Sbjct:   118 IAKEEL----ESALEED-MEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDT 172

Query:   185 MAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                 NR  +R ME+ENKK+R KA++E NE VR+L AF++KRD+RV
Sbjct:   173 RQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRV 217

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SND3 DNAJC21 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 473 (171.6 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 100/226 (44%), Positives = 141/226 (62%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHP-DKLVQSGLSQAEATAQFQELVHAYEVLS 64
             +C YE LG+R++ + +E++ AY+KLAL+ HP DK + +    AEA  QF+ +  AY+VLS
Sbjct:     2 KCHYEALGVRRDASEEELKKAYRKLALKWHPADKNLDNA---AEAAEQFKLIQAAYDVLS 58

Query:    65 DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
             DP+ERAWYD+HR  +L   L+       + +L  YF+ T +SGY D  KGFY VY ++F 
Sbjct:    59 DPQERAWYDNHREALLKGGLDGEYQDDSL-DLLHYFTVTCYSGYGDDEKGFYAVYRNVFE 117

Query:   125 KIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT-AFYNYWLGFSTVMDFCWVDEYD 183
              I   E+    +  L  DV  + P  G+ +S Y  V   FY YW  F T  +F W +EYD
Sbjct:   118 MIAKEEL----ESALEEDV-EDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYD 172

Query:   184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
                  NR  +R ME+ENKK+R KA++E NE VR+L AF++KRD+RV
Sbjct:   173 TRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRV 218

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

DICTYBASE|DDB_G0286579 dnaja5 "DnaJ homolog subfamily A member 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 414 (150.8 bits), Expect = 5.1e-53, Sum P(3) = 5.1e-53
 Identities = 93/235 (39%), Positives = 136/235 (57%)

Query:     1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
             M ++ RC YEVLG+ K    DEI+ +Y+KLAL  HPDK  Q  LS AE   +F+E+ +AY
Sbjct:     1 MNTKLRCYYEVLGIEKSAKQDEIKISYRKLALMWHPDKN-QHQLSIAEE--KFKEINNAY 57

Query:    61 EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVP---NLYSYFSNTAFSGYSDSGK-GFY 116
              VLSDP ER WYD HR  IL      + +        NL+ YF+ + F+ ++D+ + GF+
Sbjct:    58 TVLSDPNERKWYDDHREAILRGGRGGSGDGDDDDDEINLWPYFNTSIFTSFNDNDETGFF 117

Query:   117 KVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDF 176
             K+YS +F  I  +E    + +    +     P  G+  +P  +V  FY++W  F T   F
Sbjct:   118 KIYSRIFEIIDKIEEGE-ETIN---EYHHHPPKFGDSTTPIAEVLKFYSFWKDFVTKKKF 173

Query:   177 CWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMD 231
                D Y +   PNR+ +R+ME+EN+K R KA+  YNE VR LA+F+   DKR+ +
Sbjct:   174 TSSDLYHLSDAPNRQIKRLMEKENQKERSKARSAYNERVRHLASFIYNHDKRITE 228

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

FB|FBgn0027599 CG2790 [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 6.0e-53, Sum P(3) = 6.0e-53
 Identities = 97/227 (42%), Positives = 136/227 (59%)

Query:     6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             RC YE L L++     +I+SAY+K+AL+ HPDK        AEA  +FQ +  AYEVLSD
Sbjct:     2 RCYYEELELQRNANDGDIKSAYRKMALRWHPDKNPDR---LAEAKERFQLIQQAYEVLSD 58

Query:    66 PKERAWYDSHRSQILFSDLNS--ASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
             P+ER+WYD+HR QIL    NS  A NC  V   + +F+++ + GY D+  GFY+VY+D+F
Sbjct:    59 PQERSWYDNHREQILRGK-NSDYAENCLDV---FQFFTSSCYKGYGDNEHGFYRVYTDVF 114

Query:   124 NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTA-FYNYWLGFSTVMDFCWVDEY 182
              +I S ++ ++ K     D L  AP  G+  S Y  V   FY +W  +ST   + W+  Y
Sbjct:   115 VQIASEDLEFMDKD----DRLGMAPDFGHSNSSYEDVVGPFYAFWQAYSTRKTYDWLCPY 170

Query:   183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRV 229
             DV     R   R +E+E KK+ + A++E NE VR L  FV+KRD RV
Sbjct:   171 DVREIKERFILRKVEKEMKKIVQAARKERNEEVRNLVNFVRKRDPRV 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025651001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (570 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	564
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-19
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-16
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-16
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-15
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	5e-15
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	4e-14
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-13
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-13
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-13
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-12
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-12
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-12
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	3e-12
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	3e-12
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	4e-12
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	8e-12
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-11
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-11
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-11
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-11
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	5e-11
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	9e-11
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-10
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-10
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-10
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	5e-10
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	7e-10
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	7e-10
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	8e-10
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	5e-09
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	2e-08
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	4e-08
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	5e-08
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	1e-07
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-07
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-07
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-06
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	4e-06
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	8e-06
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
COG5112	126	COG5112, UFD2, U1-like Zn-finger-containing protei	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
pfam13892	140	pfam13892, DBINO, DNA-binding domain	0.003
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 81.4 bits (202), Expect = 3e-19
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 7  CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66
            YE+LG+ ++ + +EI+ AY+KLAL+ HPDK          A  +F+E+  AYEVLSDP
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDP----AAEEKFKEINEAYEVLSDP 56

Query: 67 KERAWYD 73
          ++RA YD
Sbjct: 57 EKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 6  RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             YE+LG+ ++ + DEI+ AY+KLAL+ HPDK   +   + EA  +F+E+  AYEVLSD
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDK---NPGDKEEAEEKFKEINEAYEVLSD 57

Query: 66 PK 67
          P+
Sbjct: 58 PE 59

Length = 60

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 79.8 bits (198), Expect = 4e-16
 Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 6/73 (8%)

Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          MA  KR  YEVLG+ +  + DEI+ AY+KLA++ HPD+    G    EA  +F+E+  AY
Sbjct: 1  MA--KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDR--NPG--DKEAEEKFKEIKEAY 54

Query: 61 EVLSDPKERAWYD 73
          EVLSDP++RA YD
Sbjct: 55 EVLSDPQKRAAYD 67

Length = 371

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 69.5 bits (171), Expect = 3e-15
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 7  CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
            Y++LG+  + + +EI+ AY+KLAL+ HPDK         EA  +F+E+  AYEVLSD
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDK----NPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 21/122 (17%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
             KR  YE+LG+ ++ + +EI+ +Y+KLA++ HPD+         EA   F+E   AYEV
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDR----NPGDKEAEELFKEAAEAYEV 56

Query: 63  LSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDL 122
           LSDPK+R  YD +  + L       S  G           + FSG+ D    F  ++ D 
Sbjct: 57  LSDPKKRGIYDQYGHEGL-------SGTG----------FSGFSGFDDIFSSFGDIFEDF 99

Query: 123 FN 124
           F 
Sbjct: 100 FG 101

Length = 366

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 73.8 bits (182), Expect = 4e-14
 Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+LG+ K+ + +EI+ AY+KLA + HPD+         EA  +F+E+  AYEVLSDP++
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDR-----NKDKEAEEKFKEINEAYEVLSDPEK 57

Query: 69 RAWYD 73
          RA YD
Sbjct: 58 RAQYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          +R  YEVLG+ ++ + DEI+ AY+KLALQ HPD+         EA  +F+E   AYEVL 
Sbjct: 3  QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDR----NPDNPEAEQKFKEAAEAYEVLR 58

Query: 65 DPKERAWYD 73
          D ++RA YD
Sbjct: 59 DAEKRARYD 67

Length = 373

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          KR  YE+LG+ K+ + +EI+ AY+KLA + HPD+         EA  +F+E+  AYEVLS
Sbjct: 3  KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD----KEAEEKFKEINEAYEVLS 58

Query: 65 DPKERAWYD 73
          DP++RA YD
Sbjct: 59 DPEKRAAYD 67

Length = 371

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           +EKR  YEVLG+ K  T DEI+ AY+K A+Q HPDK    G  +AE   +F+E   AY+
Sbjct: 1  MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDK--NPGDKEAE--EKFKEAAEAYD 56

Query: 62 VLSDPKERAWYD 73
          VLSDP +R+ YD
Sbjct: 57 VLSDPDKRSRYD 68

Length = 386

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 8/68 (11%)

Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
          LYEVL L K+CTT EI+ AY+KLA++ HPDK    G  +     +F+E+  AYEVLSDP+
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDK---GGDPE-----KFKEISRAYEVLSDPE 81

Query: 68 ERAWYDSH 75
          +R  YD +
Sbjct: 82 KRKIYDEY 89

Length = 421

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 7/71 (9%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEV 62
           KR  YEVLG+ K  + DEI+ AY+KL+ + HPD      +++ E A  +F+E+  AYEV
Sbjct: 2  AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPD------INKEEGADEKFKEISEAYEV 55

Query: 63 LSDPKERAWYD 73
          LSD ++RA YD
Sbjct: 56 LSDDQKRAQYD 66

Length = 376

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
          +  R  YE+LGL K+ + ++I+ AY+KLA++ HPDK       + +A  +F+E+  AY V
Sbjct: 2  ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDK-----NKEPDAEEKFKEISEAYAV 56

Query: 63 LSDPKERAWYD 73
          LSD ++RA YD
Sbjct: 57 LSDAEKRAQYD 67

Length = 377

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
          EK+  YE+LG+ +  T +EI+ AYK+L  + HPD+  +   ++ EA  +F+E+  AYEVL
Sbjct: 2  EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPE---NRKEAEQKFKEIQEAYEVL 58

Query: 64 SDPKERAWYD 73
          SDP++RA YD
Sbjct: 59 SDPQKRAMYD 68

Length = 369

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+VLG+ K+ T  EI+ AY+KLA + HPD    +    A+A  +F+E+  AY+VLSD K+
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPD----ANKGDAKAEERFKEISEAYDVLSDEKK 67

Query: 69 RAWYDSHRS 77
          R  YD  RS
Sbjct: 68 RKEYDEARS 76

Length = 389

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y +LG+ K  + +EI+ AY+KLA++ HPDK    G   AEA  +F+E+  AYEVLSD ++
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPDK--NPG--DAEAEKRFKEVSEAYEVLSDAQK 59

Query: 69 RAWYD 73
          R  YD
Sbjct: 60 RESYD 64

Length = 391

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 66.6 bits (162), Expect = 8e-12
 Identities = 67/270 (24%), Positives = 110/270 (40%), Gaps = 43/270 (15%)

Query: 8   LYEVLGL---RKECTTDEIRSAYKKLALQRHPDKLVQSG-LSQAEATAQFQELVHAYEVL 63
           LY +LGL   R +    +I  A+KK   + HPDK    G     E    F+ +  A EVL
Sbjct: 45  LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF---FKLIQKAREVL 101

Query: 64  SDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
            D K R  YDS       +D ++      VP    Y  +  F               +++
Sbjct: 102 GDRKLRLQYDS-------NDFDAD-----VPPPRIYTPDEFF---------------EVW 134

Query: 124 NKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYD 183
             ++  E  + KK        +  P +G  +S   +V  FY +W  F +   F  +DE  
Sbjct: 135 EPVFEREARFSKK--------QPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDY 186

Query: 184 VMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERK 243
                 R  +R  E +N++ R K K + N  ++ L    KKRD R+     ++ +E+++ 
Sbjct: 187 PDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRI-KSFKEQEKEMKKI 245

Query: 244 REEEKERKKRLEKERMERAKRYEEPAWARI 273
           R+ E+E   RL+     + K   +      
Sbjct: 246 RKWEREAGARLKALAALKGKAEAKNKAEIE 275

Length = 379

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 4/65 (6%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YEVLGL K  + DEI+ A++KLA++ HPDK         EA  +F+E+  AY+VLSDP++
Sbjct: 7  YEVLGLEKGASDDEIKKAFRKLAIKYHPDK----NKGNKEAEEKFKEINEAYQVLSDPQK 62

Query: 69 RAWYD 73
          +A YD
Sbjct: 63 KAQYD 67

Length = 380

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          M S+    YE+LG+    + +EI+ AY+KLAL+ HPD+          A  +F+E+  AY
Sbjct: 1  MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRN---PGDPKVAEEKFKEINEAY 57

Query: 61 EVLSDPKERAWYDSHRSQILFSDLNSASNCG 91
          E+LSDP+ RA YD   +   F   +   +  
Sbjct: 58 EILSDPERRAEYDKIGADNYFPGKSYRESAA 88

Length = 237

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ +  T +EI+ AY++LA + HPD  +  G  +AE   +F+E+  AYE+LS
Sbjct: 4  KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPD--LNPGDKEAE--QKFKEINEAYEILS 59

Query: 65 DPKERAWYD 73
          DP++RA YD
Sbjct: 60 DPQKRAQYD 68

Length = 386

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+LG+ +  + DEI+SAY+KLAL+ HPD+  + G     A  +F ++  AY VLSD ++
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG-----AAEKFAQINEAYAVLSDAEK 59

Query: 69 RAWYD 73
          RA YD
Sbjct: 60 RAHYD 64

Length = 371

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           KR  YEVLG+ +    DEI+ AY+KLAL+ HPDK         EA   F+E+  AYEVLS
Sbjct: 2   KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDK----NPDNKEAEEHFKEVNEAYEVLS 57

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSD 110
           +  +R  YD      + S  ++AS  GP         N  FS ++D
Sbjct: 58  NDDKRRRYDQFGHAGVGS--SAASGGGPGYGGGGGDFNDIFSAFND 101

Length = 397

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 64.2 bits (156), Expect = 5e-11
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 17/118 (14%)

Query: 6   RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
           R  Y++LG+ K    +EI+SAY+KLA++ HPDK         E+  +F+E   AYE+L D
Sbjct: 4   RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDK----NKGNKESEEKFKEATEAYEILRD 59

Query: 66  PKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
           PK+R  YD       F      +  G        F   A++ +SD    F  ++ D F
Sbjct: 60  PKKRQAYDQ------FGKAGVNAGAGG-------FGQGAYTDFSDIFGDFGDIFGDFF 104

Length = 372

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 63.5 bits (155), Expect = 9e-11
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y +LG+ +  +  EI+ AY+KLA + HPD  V       EA  +F+E+  AYEVLSDP++
Sbjct: 6  YGLLGVSRNASDAEIKRAYRKLARELHPD--VNPD---EEAQEKFKEISVAYEVLSDPEK 60

Query: 69 RAWYD 73
          R   D
Sbjct: 61 RRIVD 65

Length = 378

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 16/119 (13%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           KR  YE+LGL K  + DEI+ AY+K+A++ HPDK         EA + F+E   AYEVL 
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDK----NKGNKEAESIFKEATEAYEVLI 57

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLF 123
           D  +RA YD           ++A   G     +S      FSG+SD  + F  ++   F
Sbjct: 58  DDNKRAQYDRFG--------HTAFEGGGGFEGFS----GGFSGFSDIFEDFGDIFDSFF 104

Length = 365

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+LG+ ++   DE++ AY++LA + HPD   + G     A  +F+E+  AYEVLSDP+ 
Sbjct: 6  YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG-----AEDRFKEINRAYEVLSDPET 60

Query: 69 RAWYD 73
          RA YD
Sbjct: 61 RARYD 65

Length = 374

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 46/139 (33%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 5   KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           K+  YEVLG+ K  +  EIR AY+KLA Q HPD           A  +  E+  A +VL 
Sbjct: 3   KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-----AHDKMVEINEAADVLL 57

Query: 65  DPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFN 124
           D  +R  YD             +SN G   +L   FSN   SG+S     F  ++SD F 
Sbjct: 58  DKDKRKQYDQFGHAAFDGSSGFSSNFGDFEDL---FSNMGSSGFSS----FTNIFSDFFG 110

Query: 125 KIYSVEVSYVKKLGLGLDV 143
              S      K   + LD+
Sbjct: 111 SNKSDYQRSTKGQSVSLDI 129

Length = 372

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
           K+  YE+LG+ +  T +EI+ AY++LA + HPD          EA  +F+E+  AY+VL
Sbjct: 1  AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDF-----NKNPEAEEKFKEINEAYQVL 55

Query: 64 SDPKERAWYD 73
          SDP++R  YD
Sbjct: 56 SDPEKRKLYD 65

Length = 382

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 53.7 bits (130), Expect = 7e-10
 Identities = 17/27 (62%), Positives = 19/27 (70%)

Query: 298 EFYCVLCGKKFKSEKQWTNHEQSKKHK 324
           +FYCV C K FKSE    NH +SKKHK
Sbjct: 1   QFYCVACDKYFKSENALENHLKSKKHK 27

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
           Y+ LG+ K+ + DEI+ AY+KL+ + HPD   + G     A  +++E+  AYE LSDP+
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG-----AEEKYKEVQEAYETLSDPQ 60

Query: 68 ERAWYD 73
          +RA YD
Sbjct: 61 KRAAYD 66

Length = 380

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 60.0 bits (145), Expect = 8e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y +LG+ K  + DEI+ A+KKLA + HPD           A  +F+E+  AY VLSDP++
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDV-----NKSPGAEEKFKEINEAYTVLSDPEK 61

Query: 69 RAWYDSHRSQILFSDLNSASNCGPVP 94
          R  YD++ +        SA   GP P
Sbjct: 62 RRIYDTYGTTA-----ASAGWQGPPP 82

Length = 291

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
          +EKR  YEVLG+ +     EI+ AY+KLA + HPD        +  A  +F+E+  AY V
Sbjct: 2  AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDV-----SEEEGAEEKFKEISEAYAV 56

Query: 63 LSDPKERAWYD 73
          LSD ++R  YD
Sbjct: 57 LSDDEKRQRYD 67

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 7/70 (10%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE-ATAQFQELVHAYEVL 63
          KR  YEVLG+ +  + DE++ AY+KLA + HPD      +++A  A  +F+E+  AY+ L
Sbjct: 3  KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPD------VNKAPDAEDKFKEVKEAYDTL 56

Query: 64 SDPKERAWYD 73
          SDP+++A YD
Sbjct: 57 SDPQKKAHYD 66

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y++LG+ +  + ++I+ A+++LA + HPD    +   +AEA  +F+E+  AYEVLSDP++
Sbjct: 6  YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN---KAEAEEKFKEISEAYEVLSDPQK 62

Query: 69 RAWYD 73
          R  YD
Sbjct: 63 RRQYD 67

Length = 365

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+ LG+  + + +EI+ AY+KLA + HPD     G   AE   +F+ +  A++VLSDP +
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPDA--NPGDPAAE--ERFKAVSEAHDVLSDPAK 67

Query: 69 RAWYDSHRS 77
          R  YD  R 
Sbjct: 68 RKEYDETRR 76

Length = 392

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 54.0 bits (131), Expect = 5e-08
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 9   YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQ---AEATAQFQELVHAYEVLSD 65
           Y+VLG+ +     EI+ AY+KL  + HPDKLV  GL       A  + QE+  AYE++  
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIK- 261

Query: 66  PKERAW 71
            K++ +
Sbjct: 262 -KQKGF 266

Length = 267

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 299 FYCVLCGKKFKSEKQWTNHEQSKKH 323
           FYC LC   F SE Q  +H + KKH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 8/77 (10%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y ++G++       I++AY++LA + HPD        + +A A+F+E+  A+EVLSD + 
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-----KEPDAEARFKEVAEAWEVLSDEQR 61

Query: 69 RAWYDS---HRSQILFS 82
          RA YD    HR+   F+
Sbjct: 62 RAEYDQLWQHRNDPQFN 78

Length = 306

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          KR  YEVLG+ ++    EI+ A++KLA + HPD+         +A + F E+  A +VLS
Sbjct: 1  KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDR-----NKAPDAASIFAEINEANDVLS 55

Query: 65 DPKERAWYDSH 75
          +PK+RA YD +
Sbjct: 56 NPKKRANYDKY 66

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y++LG+ K  +  +++ AY KLA Q HPD          +A  +F+E+  AY+VL D ++
Sbjct: 6  YQILGVSKTASQADLKKAYLKLAKQYHPDT-----TDAKDAEKKFKEINAAYDVLKDEQK 60

Query: 69 RAWYD 73
          RA YD
Sbjct: 61 RAAYD 65

Length = 372

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 299 FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330
           FYC LC   F  E     H + KKHK+ V   
Sbjct: 4   FYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 8e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+L + K    + I+ +Y+KLAL+ HPD+         EA  +F+ +  AY VLSD K+
Sbjct: 6  YEILEVEKHSNQETIKKSYRKLALKYHPDR----NAGDKEAEEKFKLINEAYGVLSDEKK 61

Query: 69 RAWYDSHRSQIL 80
          RA YD +  + L
Sbjct: 62 RALYDRYGKKGL 73

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 9   YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQ-SGLSQAEATAQFQELVHAYEVLSDPK 67
           YE+LG+ ++ +  +I+  Y+ L+++ HPDK        ++E   +++ +  AY +L+D K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 68  ERAWY 72
            R  Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 26/129 (20%)

Query: 183 DVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIER 242
            ++       +  M  E K        EY++ VREL       D+R       K EE   
Sbjct: 216 SLLRTVKPPPKPPMTPEEKD------DEYDQRVRELTF-----DRRAQPTDRTKTEE--E 262

Query: 243 KREEEKERKKRLEKERMER------AKRYEEPAWARIDD-------EGDNEVGNEEGLEE 289
             +EE ER K+LE ER+ R          EE +    DD       + D+  G  +G E+
Sbjct: 263 LAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEED 322

Query: 290 EEIEKKRSE 298
           EE E+   +
Sbjct: 323 EEEEEDGVD 331

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 56/292 (19%), Positives = 95/292 (32%), Gaps = 36/292 (12%)

Query: 216 RELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKRLEKERMERAKRYEEPAWARIDD 275
           +++  +VK++  R     V    ++ +    E E       E  ER    E         
Sbjct: 606 KQIELWVKEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGG 665

Query: 276 EGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFV 335
           E + E   E   E E   +  +E       +K + E +     +   HK +         
Sbjct: 666 EAEQEGETETKGENESEGEIPAE-------RKGEQEGEGEIEAKEADHKGETEAEEVEHE 718

Query: 336 DEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEV 395
            E E      E + E  E GE         E E   G G   G  +VE+E     D  E 
Sbjct: 719 GETEAEGTEDEGEIETGEEGE-------EVEDE---GEGEAEGKHEVETE----GDRKET 764

Query: 396 NEVDDRFGKEDEDEDE-----------DADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKT 444
               +   +  EDEDE             D+            +  ++     + E    
Sbjct: 765 EHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQAD 824

Query: 445 EAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKGDRDGFKSTNEE 496
           +  V++E GE E    +  ++     + ++G   GG +  GD +  +   EE
Sbjct: 825 DTEVKDETGEQELNAENQGEAK----QDEKGVDGGGGSDGGDSEEEEEEEEE 872

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|227443 COG5112, UFD2, U1-like Zn-finger-containing protein [General function prediction only]

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 244 REEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKR---SEFY 300
           R + K +K+R  + R++R + +      R  D+  N++  +E  ++   + +     + Y
Sbjct: 3   RSDTKRKKRRSNRLRIKRTRLF-----GRDLDQIKNDLSTKESQKKLPYDPELPGLGQHY 57

Query: 301 CVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDG-EVEELGERFK 359
           C+ C + F +EK    H++ K HK +  +LRE    +++  A  G   G E E      K
Sbjct: 58  CIECARYFITEKALMEHKKGKVHKRRAKELREVPYTQEDAEAAVGLTVGPEKESNEALLK 117

Query: 360 DNVGV 364
           +++  
Sbjct: 118 EHLDS 122

Length = 126

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 190 RKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKE 249
           RK  +  EEE +K+ K A+ E  E  +E     KK +K+      K+  E +  +   +E
Sbjct: 259 RKVDKTREEEEEKILKAAEEERQEEAQE-----KKEEKK------KEEREAKLAKLSPEE 307

Query: 250 RKKRLEKERMERAKR 264
           ++K  EKER ++A++
Sbjct: 308 QRKLEEKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 22/68 (32%)

Query: 200 NKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKRLEKERM 259
            K  + +AKR     +RE+  F KK +K                  EE+E +KR EKE +
Sbjct: 60  MKDTQLRAKR----LMREMLLFWKKNEK------------------EERELRKRAEKEAL 97

Query: 260 ERAKRYEE 267
           E+AK+ EE
Sbjct: 98  EQAKKEEE 105

DBINO is a DNA-binding domain found on global transcription activator SNF2L1 proteins and chromatin re-modelling proteins. Length = 140

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 194 RVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKERKKR 253
            ++ + N +L  +       T  E+      +        +KK  E   K+ EE++++K+
Sbjct: 375 SIIFKHNPELAARLAAFLELTEEEIEFLTGSKKATKK---IKKIVEKAEKKREEEKKEKK 431

Query: 254 LEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRS 297
            +    ++ +  EE    + ++E + E    E  +EEE EKK+ 
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	564
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	100.0
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	100.0
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.9
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.85
PRK14296	372	chaperone protein DnaJ; Provisional	99.77
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.77
PRK14288	369	chaperone protein DnaJ; Provisional	99.77
PRK14286	372	chaperone protein DnaJ; Provisional	99.76
PRK14287	371	chaperone protein DnaJ; Provisional	99.73
PRK14285	365	chaperone protein DnaJ; Provisional	99.73
PRK14276	380	chaperone protein DnaJ; Provisional	99.73
PRK14279	392	chaperone protein DnaJ; Provisional	99.73
PRK14282	369	chaperone protein DnaJ; Provisional	99.72
PRK14301	373	chaperone protein DnaJ; Provisional	99.72
PRK14294	366	chaperone protein DnaJ; Provisional	99.72
PRK14297	380	chaperone protein DnaJ; Provisional	99.71
PRK14277	386	chaperone protein DnaJ; Provisional	99.71
PRK10767	371	chaperone protein DnaJ; Provisional	99.71
PRK14298	377	chaperone protein DnaJ; Provisional	99.71
PRK14295	389	chaperone protein DnaJ; Provisional	99.71
PRK14299	291	chaperone protein DnaJ; Provisional	99.7
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.7
PRK14280	376	chaperone protein DnaJ; Provisional	99.7
PRK14278	378	chaperone protein DnaJ; Provisional	99.69
PRK14291	382	chaperone protein DnaJ; Provisional	99.69
PRK14283	378	chaperone protein DnaJ; Provisional	99.68
PRK14281	397	chaperone protein DnaJ; Provisional	99.67
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.66
PRK14284	391	chaperone protein DnaJ; Provisional	99.65
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PRK14290	365	chaperone protein DnaJ; Provisional	99.65
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.64
PRK14300	372	chaperone protein DnaJ; Provisional	99.64
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.64
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.63
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.63
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.62
PRK14289	386	chaperone protein DnaJ; Provisional	99.61
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.6
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.59
PRK14292	371	chaperone protein DnaJ; Provisional	99.57
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.56
PRK14293	374	chaperone protein DnaJ; Provisional	99.56
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.53
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.51
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.49
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.42
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.39
PHA03102	153	Small T antigen; Reviewed	99.38
PRK01356	166	hscB co-chaperone HscB; Provisional	99.37
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.36
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.35
PRK05014	171	hscB co-chaperone HscB; Provisional	99.33
PRK03578	176	hscB co-chaperone HscB; Provisional	99.3
PRK00294	173	hscB co-chaperone HscB; Provisional	99.27
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.23
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.12
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.11
PTZ00100	116	DnaJ chaperone protein; Provisional	99.08
PHA02624	647	large T antigen; Provisional	98.96
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.9
PRK01773	173	hscB co-chaperone HscB; Provisional	98.84
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.7
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.66
KOG0724	335	consensus Zuotin and related molecular chaperones	98.65
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.5
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.1
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.98
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.88
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.7
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	97.66
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	97.64
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.09
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	96.54
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	96.19
KOG0431	453	consensus Auxilin-like protein and related protein	95.85
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	95.66
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.52
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	95.52
PLN02748	468	tRNA dimethylallyltransferase	95.18
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.66
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.08
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.66
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	93.33
KOG4727	193	consensus U1-like Zn-finger protein [General funct	92.96
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	92.21
smart00355	26	ZnF_C2H2 zinc finger.	91.39
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	91.13
KOG3032	264	consensus Uncharacterized conserved protein [Funct	90.27
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	88.21
PHA02768	55	hypothetical protein; Provisional	87.84
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	86.38
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	85.71
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	85.37
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	84.29
PHA00616	44	hypothetical protein	80.67

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-82  Score=663.68  Aligned_cols=447  Identities=39%  Similarity=0.595  Sum_probs=347.8

Q ss_pred             CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456            2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (564)
Q Consensus         2 a~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (564)
                      +..++|||+||||.++|+..+||++||+|||+||||||  |. ..++|+++|+.|+.||+|||||++|+|||+|+.+||+
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDkn--pd-~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~   80 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKN--PD-RIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR   80 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCC--Cc-cHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence            34578999999999999999999999999999999998  43 7899999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCccchhhhHHHHhHhhHHHHHHhhcCCCcccccCCCCCCCCCChhhhH
Q 008456           82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT  161 (564)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~F~~s~f~gf~~~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fG~~~s~~e~V~  161 (564)
                      +.....  +..++++|.||+++||.||.++..|||.||++||..++..++.|+.      +.+..+|.||++.|+|+.|.
T Consensus        81 ~~~s~~--~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~------d~~~~ap~fg~~~t~ye~~~  152 (508)
T KOG0717|consen   81 GKNSDT--GVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLG------DSKLLYPLFGYSTTDYEQVV  152 (508)
T ss_pred             CCCCcc--ccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhcc------CCccccccccCCCCcHHHHH
Confidence            876533  4678999999999999999999999999999999999999988764      45668999999999999999


Q ss_pred             HHHHHHhccccccccccccccccCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHhHHHHhHHHHH
Q 008456          162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIE  241 (564)
Q Consensus       162 ~FY~~W~~F~T~r~Fsw~deyd~~~a~nR~~RR~mEkeNkK~R~k~kkE~n~~VR~LV~fvkkrDpRv~~~~~~~~~e~e  241 (564)
                      .||.||++|+|.++|+|+|+|+++++.+|..||+|+++|+++|+.+|++||++||.||.||+||||||++++.++.++.+
T Consensus       153 ~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k~~E~~  232 (508)
T KOG0717|consen  153 PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELKDAEAY  232 (508)
T ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997776667766


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHhhhcchhhhhhccccCcccCCccc-chhHHHhhccCccccccccccccCHHHHHHh
Q 008456          242 RKREEEKERKKRLEKERME---RAKRYEEPAWARIDDEGDNEVGNEEG-LEEEEIEKKRSEFYCVLCGKKFKSEKQWTNH  317 (564)
Q Consensus       242 ~kk~ee~~rk~~~~~~r~e---~a~~~~e~~w~~~~e~e~~~~~~~~~-~eee~~ee~~~~~~C~~C~K~F~s~~~~~nH  317 (564)
                      +.+.++. |+.+...+++.   +...+...+|+...+.++.+....++ .+.++.+.+.+.+||+||+|+|+|++||.||
T Consensus       233 r~kqe~~-Rk~~~~~r~e~~e~r~n~~e~~~~~~~~e~ed~~e~~~d~~~e~de~d~~ge~lyC~vCnKsFKseKq~kNH  311 (508)
T KOG0717|consen  233 RSKQEES-RKQQLRKRREYAETRKNNGEGSEEALKEEIEDELEKSSDDETESDEADNEGEVLYCVVCNKSFKSEKQLKNH  311 (508)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccchhhhhhhhcCCceEEeeccccccchHHHHhh
Confidence            6444333 33333333332   12222333454433333322211111 1112223445559999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHHhhhhhHHhhhcCCCCchhHHHhHhhhcccCcchhhhcCCCCCCCCCCCcccchhhccccccccc
Q 008456          318 EQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNE  397 (564)
Q Consensus       318 ~~SkkHk~~~~~l~~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (564)
                      ++||||+++|.+|+++|.+|++ -...|..+                                ..+.++|.       + 
T Consensus       312 EnSKKHkenv~eLrqemEEEe~-d~~~~qae--------------------------------e~e~e~~s-------e-  350 (508)
T KOG0717|consen  312 ENSKKHKENVAELRQEMEEEEE-DEAQGQAE--------------------------------ENELEDFS-------E-  350 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-hhhhhccc--------------------------------cchhhhhh-------h-
Confidence            9999999999999999987652 00001110                                01223332       1 


Q ss_pred             cccccCCCCCcccchhhhhHHHHHHHHccccccccccccccccccccccccccccCCccccccccchhhhhhhhhhhccC
Q 008456          398 VDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKK  477 (564)
Q Consensus       398 ~~~~~~~~~~~~~ed~dde~~~l~~m~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~k~~~~~~~~~~~~~  477 (564)
                         ++-+++..+.+....++...+-|+|+..|.+-...+-...+-+  -+++.+.+..++.++++.|.++..+. .|.- 
T Consensus       351 ---ee~~~d~ses~~~n~~~~~~k~~~s~d~n~~~n~~~E~~d~~~--e~~e~d~dtae~ee~d~qk~~~~~k~-~K~~-  423 (508)
T KOG0717|consen  351 ---EEPEDDPSESEYKNKEKDRDKKNVSFDENEKVNTFAEISDEDF--EPAEEDGDTAESEEFDQQKNKSVNKK-IKPC-  423 (508)
T ss_pred             ---hccccCCCCCchhhhHhhhhhcccchhhhhhhccccccccCCC--cccccccccccchhhccccccchhhh-cccc-
Confidence               1223455666778889999999999999988766665555533  33467777788889999999665543 2221 


Q ss_pred             CCCCCCCCCCCCCCCCCcccCCCCCCCccccccC
Q 008456          478 SGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSS  511 (564)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~s~  511 (564)
                         .++...+.++..|....+.+++..+..+.|.
T Consensus       424 ---~D~k~~a~kvk~pk~~~~kd~~k~a~~~p~~  454 (508)
T KOG0717|consen  424 ---DDKKDEAKKVKKPKGKVTKDNKKPATVAPSS  454 (508)
T ss_pred             ---ccchhhhhhccCCCCCCCCccCCCccCCCCC
Confidence               1667778888888888888888887766555

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.7e-34  Score=283.34  Aligned_cols=191  Identities=30%  Similarity=0.447  Sum_probs=164.3

Q ss_pred             CcCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456            5 KRCLYEVLGLRK---ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (564)
Q Consensus         5 k~d~YevLGv~~---~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (564)
                      ..|+|.+|||+.   .|++.+|.+|+++.+++||||+....|  ...+...|.+||.||+||+|+..|..||+.....  
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a--  117 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA--  117 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhcccccccc--
Confidence            468999999997   799999999999999999999995544  2357889999999999999999999999963211  


Q ss_pred             cCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCccchhhhHHHHhHhhHHHHHHhhcCCCcccccCCCCCCCCCChhhhH
Q 008456           82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT  161 (564)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~F~~s~f~gf~~~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fG~~~s~~e~V~  161 (564)
                                .+|           ..-......||.+|+++|.+-    +.|        +..+++|+||+++++...|.
T Consensus       118 ----------dvp-----------pp~~~t~~~Ffe~w~pvFe~e----arF--------SkKqPvPsLg~~dss~keVe  164 (379)
T COG5269         118 ----------DVP-----------PPRIYTPDEFFEVWEPVFERE----ARF--------SKKQPVPSLGPSDSSLKEVE  164 (379)
T ss_pred             ----------CCC-----------CccCCCchhHHHHHHHHHHhh----hhc--------cccCCCCCCCCchhHHHHHH
Confidence                      111           111234567999999999764    333        35678999999999999999


Q ss_pred             HHHHHHhccccccccccccccccCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHhH
Q 008456          162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM  232 (564)
Q Consensus       162 ~FY~~W~~F~T~r~Fsw~deyd~~~a~nR~~RR~mEkeNkK~R~k~kkE~n~~VR~LV~fvkkrDpRv~~~  232 (564)
                      .||.||++|.|||+|.++|+--..+.++|..+|..|+.|+..|++.+...|.+|+.||+.+.+|||||+-+
T Consensus       165 ~FY~FW~nFdSWRtFE~lded~pdd~e~rD~kry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~f  235 (379)
T COG5269         165 EFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSF  235 (379)
T ss_pred             HHHHHHHhccccccccchhhhcCcchhhhhhHHHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhH
Confidence            99999999999999999999888889999999999999999999999999999999999999999999654

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4.4e-24  Score=224.31  Aligned_cols=74  Identities=46%  Similarity=0.745  Sum_probs=67.8

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (564)
                      .++|||+||||+++||.+|||+|||+||++||||+|  ++  .++|.++|++|++||+|||||++|+.||.++...+.
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n--~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN--PG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            468999999999999999999999999999999999  43  568999999999999999999999999999875443

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=8.5e-22  Score=202.94  Aligned_cols=75  Identities=44%  Similarity=0.709  Sum_probs=69.7

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhcc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (564)
                      ..+|||+||||+++||..+||+|||||||+||||||  |  +.+.|.+.|+.|+.||+|||||.+|+.||.+|+..+..
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkN--p--ddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~   88 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKN--P--DDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD   88 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--C--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence            468999999999999999999999999999999999  4  35689999999999999999999999999999877664

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.4e-19  Score=188.72  Aligned_cols=71  Identities=39%  Similarity=0.574  Sum_probs=65.0

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|  +.   ..|.++|+.|++||+|||||.+|+.||.++...+
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n--~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~   73 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF   73 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence            57999999999999999999999999999999999  32   3588999999999999999999999999987543

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=3.7e-19  Score=185.13  Aligned_cols=75  Identities=41%  Similarity=0.685  Sum_probs=68.1

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhccCC
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDL   84 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~~~   84 (564)
                      .+.||.||||+++||..+||+|||+||++||||||  |+     |.++|++|+.||+|||||.+|..||.+++..+.++.
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn--~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~   75 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKN--PD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG   75 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCC--cc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence            46799999999999999999999999999999999  53     789999999999999999999999999998875544


Q ss_pred             CC
Q 008456           85 NS   86 (564)
Q Consensus        85 ~~   86 (564)
                      .+
T Consensus        76 ~~   77 (337)
T KOG0712|consen   76 GG   77 (337)
T ss_pred             CC
Confidence            33

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.2e-19  Score=187.99  Aligned_cols=70  Identities=40%  Similarity=0.679  Sum_probs=64.2

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ..|||+||||+++||.++||+|||+||++||||+|  ++  ...|.++|+.|++||+|||||.+|+.||.++..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~--~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRN--AG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            47999999999999999999999999999999999  32  245899999999999999999999999998764

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.3e-18  Score=185.03  Aligned_cols=72  Identities=43%  Similarity=0.770  Sum_probs=65.4

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|  ++  ..+|.++|++|++||+|||||.+|+.||.++...+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKN--KG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV   74 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence            47999999999999999999999999999999999  32  34688999999999999999999999999886543

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=4.8e-18  Score=180.76  Aligned_cols=69  Identities=42%  Similarity=0.738  Sum_probs=63.7

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ..|||+||||+++||.++||+|||+||++||||+|.  .   ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK--A---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            579999999999999999999999999999999993  1   35889999999999999999999999998764

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=6.4e-18  Score=179.41  Aligned_cols=71  Identities=48%  Similarity=0.746  Sum_probs=64.9

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|  ++  .+.|.++|+.|++||+||+||.+|+.||.++...
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~   72 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN--KG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA   72 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence            47999999999999999999999999999999999  32  3468899999999999999999999999987643

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=5.6e-18  Score=180.73  Aligned_cols=71  Identities=38%  Similarity=0.602  Sum_probs=64.7

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|.  .   ..|.++|+.|++||+||+||.+|+.||.++...+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~   73 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK--E---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA   73 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence            579999999999999999999999999999999993  2   3578999999999999999999999999886543

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=6.2e-18  Score=181.06  Aligned_cols=70  Identities=37%  Similarity=0.657  Sum_probs=64.4

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|  ++  .+.|.++|+.|++||+|||||.+|+.||.++..
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~   77 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN--PG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL   77 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence            47999999999999999999999999999999999  33  346899999999999999999999999998753

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=9.1e-18  Score=178.45  Aligned_cols=72  Identities=44%  Similarity=0.762  Sum_probs=65.2

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ..+|||+||||+++||.++||+|||+||++||||+|  ++ +...|.++|+.|++||+|||||.+|+.||.++..
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282          2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH--PE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--cc-chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            358999999999999999999999999999999999  33 2346899999999999999999999999998754

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=9.5e-18  Score=178.60  Aligned_cols=70  Identities=47%  Similarity=0.774  Sum_probs=64.4

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ..|||+||||+++||.++||+|||+||++||||+|  ++  ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRN--PD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcC--CC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            48999999999999999999999999999999999  32  346889999999999999999999999998764

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=8.4e-18  Score=178.55  Aligned_cols=72  Identities=44%  Similarity=0.763  Sum_probs=65.2

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (564)
                      ..+|||+||||+++||.++||+|||+||++||||++  ++  ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g   73 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG   73 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence            358999999999999999999999999999999999  32  2458899999999999999999999999987643

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.3e-17  Score=177.80  Aligned_cols=71  Identities=46%  Similarity=0.775  Sum_probs=65.0

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (564)
                      ..|||+||||+++||.++||+|||+||++||||+|  ++  ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~   73 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKN--KG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD   73 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence            47999999999999999999999999999999999  32  3468899999999999999999999999987654

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.6e-17  Score=177.48  Aligned_cols=72  Identities=43%  Similarity=0.761  Sum_probs=65.4

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      ..|||+||||+++||.++||+|||+||++||||+|  ++  ...|.++|+.|++||+|||||.+|+.||.++...+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   75 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF   75 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence            47999999999999999999999999999999999  42  34688999999999999999999999999876543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.6e-17  Score=176.62  Aligned_cols=70  Identities=50%  Similarity=0.832  Sum_probs=64.1

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|  ++  ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRN--PG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            57999999999999999999999999999999999  32  245889999999999999999999999998754

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.4e-17  Score=177.51  Aligned_cols=69  Identities=43%  Similarity=0.749  Sum_probs=63.7

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|.  .   ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK--E---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA   72 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC--C---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence            579999999999999999999999999999999993  1   35789999999999999999999999998764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.9e-17  Score=177.16  Aligned_cols=71  Identities=44%  Similarity=0.686  Sum_probs=64.0

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhh----ccchh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS----HRSQI   79 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs----~r~~~   79 (564)
                      ..|||+||||+++||..+||+|||+||++||||+|  ++  ...|.++|+.|++||+||+||.+|+.||.    ++...
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g   82 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDAN--KG--DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGG   82 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccc
Confidence            36999999999999999999999999999999999  32  24689999999999999999999999998    66543

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.6e-17  Score=169.84  Aligned_cols=69  Identities=41%  Similarity=0.659  Sum_probs=63.7

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ..|||+||||+++||.++||+|||+||++||||+|.     ...|.++|+.|++||+|||||.+|+.||.++..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-----SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            479999999999999999999999999999999993     235889999999999999999999999998764

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.70  E-value=1.5e-17  Score=179.46  Aligned_cols=67  Identities=51%  Similarity=0.830  Sum_probs=61.5

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|  +      ..++|+.|++||+|||||.+|+.||.++...
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~--~------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~   93 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG--G------DPEKFKEISRAYEVLSDPEKRKIYDEYGEEG   93 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--c------hHHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence            47999999999999999999999999999999998  3      1479999999999999999999999987643

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.4e-17  Score=175.70  Aligned_cols=70  Identities=46%  Similarity=0.681  Sum_probs=64.1

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (564)
                      ..|||+||||+++||.++||+|||+||++||||+|..     ..|.++|++|++||+|||||.+|+.||.++...
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-----EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            4799999999999999999999999999999999932     348899999999999999999999999987643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=3e-17  Score=175.05  Aligned_cols=68  Identities=41%  Similarity=0.646  Sum_probs=63.2

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      +|||+||||+++||.++||+|||+||++||||+|  +   .+.|.++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~--~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN--P---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCC--C---cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            7999999999999999999999999999999999  3   246889999999999999999999999998753

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=3.1e-17  Score=175.12  Aligned_cols=69  Identities=42%  Similarity=0.739  Sum_probs=63.7

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ++|||+||||+++||.++||+|||+||++||||+|  +.   +.|.++|+.|++||+|||||.+|+.||.++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFN--KN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            47999999999999999999999999999999999  32   35789999999999999999999999998764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=3.3e-17  Score=174.66  Aligned_cols=71  Identities=42%  Similarity=0.645  Sum_probs=65.1

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (564)
                      ..+|||+||||+++||..+||+|||+||++||||+|  +.   ..|.++|+.|++||+|||||.+|++||.++...
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g   73 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS--EE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG   73 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence            468999999999999999999999999999999999  32   468999999999999999999999999987643

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=8e-17  Score=172.82  Aligned_cols=72  Identities=46%  Similarity=0.707  Sum_probs=65.0

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      ..|||+||||+++||..+||+|||+||++||||++  ++  ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~   73 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKN--PD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV   73 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence            37999999999999999999999999999999999  32  24688999999999999999999999999876543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.66  E-value=1.5e-16  Score=168.06  Aligned_cols=68  Identities=46%  Similarity=0.740  Sum_probs=62.5

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456            7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (564)
Q Consensus         7 d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (564)
                      |||+||||+++||.++||+|||+||++||||++.     ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~   68 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-----DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG   68 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence            7999999999999999999999999999999993     2357899999999999999999999999987643

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=2e-16  Score=169.45  Aligned_cols=71  Identities=44%  Similarity=0.682  Sum_probs=64.6

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      .|||+||||+++||.++||+|||+||++||||+|  ++  ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   71 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN--PG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP   71 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence            3899999999999999999999999999999999  32  34688999999999999999999999999987543

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=9.1e-17  Score=170.70  Aligned_cols=76  Identities=42%  Similarity=0.631  Sum_probs=70.4

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (564)
                      ..+||.+|+|+++||.++|++|||++++.|||||+..|. ..+.|++.|+.|+.||+|||||++|+.||.+|.++|.
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd-~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPD-QKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            358999999999999999999999999999999996543 5678999999999999999999999999999998887

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=2.2e-16  Score=167.68  Aligned_cols=70  Identities=39%  Similarity=0.743  Sum_probs=64.3

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      .|||+||||+++||..+||+|||+||++||||++  ++ ....|.++|+.|++||+|||||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PG-NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            6999999999999999999999999999999998  32 3346899999999999999999999999998764

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.64  E-value=7.9e-17  Score=183.51  Aligned_cols=72  Identities=28%  Similarity=0.471  Sum_probs=65.5

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      +.++||+||||+++||..+||+|||+||++||||++  ++ +  .|..+|+.|++||+|||||.+|++||.+|..++
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN--~~-~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl  642 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKR--SG-N--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI  642 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC-c--hHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence            468999999999999999999999999999999999  43 2  478899999999999999999999999987543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=2.9e-16  Score=167.23  Aligned_cols=69  Identities=36%  Similarity=0.613  Sum_probs=63.1

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI   79 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~   79 (564)
                      +|||+||||+++||.++||+|||+||++||||++.  .   ..|.++|+.|++||+||+||.+|+.||.++...
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   71 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD--A---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA   71 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence            69999999999999999999999999999999983  2   247889999999999999999999999987643

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.64  E-value=3.4e-16  Score=162.54  Aligned_cols=68  Identities=35%  Similarity=0.595  Sum_probs=62.5

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ..|||+||||+++||.++||+|||+||++||||++..     ..|.++|+.|++||+||+||.+|+.||.++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-----~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-----PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            4799999999999999999999999999999999831     3589999999999999999999999999753

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.63  E-value=2.4e-16  Score=126.51  Aligned_cols=64  Identities=47%  Similarity=0.818  Sum_probs=59.1

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhh
Q 008456            7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD   73 (564)
Q Consensus         7 d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YD   73 (564)
                      |||+||||+++|+.++|+++|+++++.+|||++.  + ....+...|..|+.||++|+||..|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~--~-~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNS--G-DEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGT--S-THHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccch--h-hhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999983  3 22578999999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.2e-16  Score=155.63  Aligned_cols=72  Identities=51%  Similarity=0.775  Sum_probs=65.9

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ..+|+|+||||.++||..+|++||++|||+||||++  +-....+|+..|+.|+.||.||||..+|+.||..|.
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            356999999999999999999999999999999999  334566899999999999999999999999999754

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.3e-16  Score=161.36  Aligned_cols=70  Identities=49%  Similarity=0.732  Sum_probs=65.0

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ..|||.||||+.+||..+|++|||++||+||||||  |++  +.|.+.|+.|.+||+||+||..|+.||..+..
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKN--p~d--P~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~   73 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKN--PGD--PQAAEKFQELSEAYEVLSDEESRAAYDKLRKS   73 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCC--CCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            68999999999999999999999999999999999  653  34999999999999999999999999998753

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=8.6e-16  Score=164.27  Aligned_cols=70  Identities=51%  Similarity=0.808  Sum_probs=64.5

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      .+|||+||||+++||.++||+|||+||++||||+|  ++  .+.|.++|+.|++||+||+||.+|+.||.++..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKN--PG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            58999999999999999999999999999999999  33  346899999999999999999999999998764

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=5.3e-16  Score=156.06  Aligned_cols=71  Identities=51%  Similarity=0.744  Sum_probs=64.5

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      .++|+||||+++|+.++||||||+|+++||||++  +. + ++++.+|+.|+.||.|||||.+|..||..+.-.+
T Consensus        31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~--gd-~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l  101 (279)
T KOG0716|consen   31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKN--GD-N-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGL  101 (279)
T ss_pred             hHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcC--CC-C-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence            4699999999999999999999999999999999  32 2 6799999999999999999999999999876443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.59  E-value=1.4e-15  Score=157.48  Aligned_cols=73  Identities=37%  Similarity=0.641  Sum_probs=65.0

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      +.++|||.||||.++|+..+|-+|||+||++||||-.+. ......|..+|..|..|-+|||||.+|+.||..-
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd-EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe  463 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD-EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE  463 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC-HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence            468999999999999999999999999999999999842 1134469999999999999999999999999853

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2.1e-15  Score=160.41  Aligned_cols=68  Identities=43%  Similarity=0.715  Sum_probs=62.8

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      .|||+||||+++||.++||+|||+||++||||++.     ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-----~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-----EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            48999999999999999999999999999999992     245889999999999999999999999998763

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2.7e-15  Score=154.85  Aligned_cols=70  Identities=41%  Similarity=0.622  Sum_probs=64.2

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      +.+.|||+||||+++||..|||+||++||++||||.|..     ..|.++|+.|.+||+||+|+.+|..||..+.
T Consensus        40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-----~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~  109 (288)
T KOG0715|consen   40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-----KEASKKFKEISEAYEILSDEEKRQEYDVYGL  109 (288)
T ss_pred             CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-----cchhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence            345599999999999999999999999999999999942     2799999999999999999999999999865

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=2.7e-15  Score=159.89  Aligned_cols=68  Identities=41%  Similarity=0.715  Sum_probs=62.7

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      .|||+||||+++||..+||+|||+||++||||+|..     ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-----~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-----PGAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            699999999999999999999999999999999932     34789999999999999999999999998754

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.53  E-value=1.4e-14  Score=114.27  Aligned_cols=59  Identities=51%  Similarity=0.837  Sum_probs=53.7

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChh
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK   67 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~   67 (564)
                      ++||+||||+++++..+||+||++|++.||||++.  +. ...+...|..|+.||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~--~~-~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNP--GD-KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc-hHHHHHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999999993  21 5678999999999999999985

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.7e-14  Score=137.36  Aligned_cols=73  Identities=44%  Similarity=0.705  Sum_probs=65.1

Q ss_pred             CCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         1 ma~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      |+....+||+||||+++|+..+|++|||++|++||||++  ++... .|.+.|+.|++||+||+|+..|+.||..+
T Consensus         1 ~~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~--~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           1 MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRN--PGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             CchhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            455678999999999999999999999999999999999  33222 58999999999999999999999999864

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.49  E-value=4.2e-14  Score=109.57  Aligned_cols=55  Identities=47%  Similarity=0.770  Sum_probs=50.7

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCC
Q 008456            7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD   65 (564)
Q Consensus         7 d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsD   65 (564)
                      |||+||||++++|.++|+++||+|+++||||++.  +.  ..+...|..|+.||+||+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~--~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--DD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc--HHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999993  21  5689999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.42  E-value=1.5e-13  Score=154.30  Aligned_cols=69  Identities=42%  Similarity=0.684  Sum_probs=63.2

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ++|||+||||+++|+..+||+|||+||++||||++.  +   ..+..+|+.|+.||+||+||.+|+.||.++..
T Consensus         1 k~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~--~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a   69 (871)
T TIGR03835         1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK--A---PDAASIFAEINEANDVLSNPKKRANYDKYGHD   69 (871)
T ss_pred             CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence            369999999999999999999999999999999983  2   45788999999999999999999999998753

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=3.5e-13  Score=132.13  Aligned_cols=70  Identities=31%  Similarity=0.557  Sum_probs=63.2

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ..-|+|+||||+++||..+||+|||+|+++|||||++.+    ....+.|..|.+||+.|+|+..|..|-.++.
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~  166 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYGN  166 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence            457999999999999999999999999999999999432    4567889999999999999999999998865

>PHA03102 Small T antigen; Reviewed

Probab=99.38  E-value=3.4e-13  Score=127.25  Aligned_cols=64  Identities=23%  Similarity=0.350  Sum_probs=58.9

Q ss_pred             cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            6 RCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         6 ~d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ..+|+||||+++|  |..+||+|||++|+++|||++  +      ..++|+.|+.||+||+|+..|..||.++.
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg--g------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~   70 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG--G------DEEKMKELNTLYKKFRESVKSLRDLDGEE   70 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--c------hhHHHHHHHHHHHHHhhHHHhccccccCC
Confidence            4589999999999  999999999999999999997  2      24699999999999999999999999865

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=5.3e-13  Score=127.74  Aligned_cols=71  Identities=25%  Similarity=0.334  Sum_probs=60.0

Q ss_pred             CcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         5 k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      +.|||+||||++.  ++..+|+++||+|+++||||++... .....+...|..|++||.||+||.+|+.|+-..
T Consensus         1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~-~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTL-QEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            3689999999996  7899999999999999999998421 122345677999999999999999999998754

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.6e-13  Score=142.43  Aligned_cols=69  Identities=48%  Similarity=0.826  Sum_probs=64.7

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      ...|||.||||.++|+..+||+|||++||.||||++  .+ +..++..+|+.|-+||.||+||.+|..||+.
T Consensus       371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~--ag-sq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN--AG-SQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC--cc-hhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            457999999999999999999999999999999999  45 4788999999999999999999999999985

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=7.9e-13  Score=132.09  Aligned_cols=73  Identities=42%  Similarity=0.722  Sum_probs=64.6

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      +.|||.||||.+.|+..+|++||++||++||||+|  ++. ...|..+|.+|.+||+||+||.+|..||..+...+
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~--~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~   74 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKN--PSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL   74 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence            57999999999999999999999999999999998  443 44566699999999999999999999999987433

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.33  E-value=1.6e-12  Score=124.97  Aligned_cols=70  Identities=29%  Similarity=0.382  Sum_probs=59.4

Q ss_pred             cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         6 ~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      .|||+||||++.  ++..+|+++||+|+++||||+....+. ....|...|..|++||+||+||.+|+.|+-.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            389999999995  788999999999999999999843221 1224778999999999999999999999964

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.30  E-value=2.9e-12  Score=123.79  Aligned_cols=75  Identities=29%  Similarity=0.429  Sum_probs=61.8

Q ss_pred             CCCCCcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            1 MASEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         1 ma~~k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      |-+...|||+||||++.  ++..+|+++||+|+++||||++...+. ....+...+..|+.||.||+||.+|+.|+-.
T Consensus         1 ~~~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~   78 (176)
T PRK03578          1 MVSLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH   78 (176)
T ss_pred             CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            34567899999999995  689999999999999999999842211 1123566789999999999999999999974

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.27  E-value=7.3e-12  Score=120.65  Aligned_cols=74  Identities=26%  Similarity=0.421  Sum_probs=62.0

Q ss_pred             CCCcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            3 SEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         3 ~~k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      |...+||++|||++.  .+..+|+++||+|+++||||++...+. ....+...|..|+.||.||+||..|+.|+-..
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l   77 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL   77 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            346899999999996  678999999999999999999843211 12347788999999999999999999999753

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=6.6e-12  Score=134.11  Aligned_cols=66  Identities=33%  Similarity=0.577  Sum_probs=62.2

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      ..|+|.||||+.++++++||+.||++|...|||||.     .+.|.+.|+.|+.||+||+|+.+|..||..
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-----~~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-----IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-----ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            579999999999999999999999999999999994     456999999999999999999999999985

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.12  E-value=5.7e-11  Score=121.70  Aligned_cols=60  Identities=40%  Similarity=0.632  Sum_probs=52.8

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCc---hHHHHHHHHHHHHHhhhcCC
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVLSD   65 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~---~eea~~~F~~I~~AYeVLsD   65 (564)
                      .++|+||||+++||.++||+|||+|+++||||++...|.+   .+.|+++|+.|+.||++|+.
T Consensus       200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998543322   35689999999999999974

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.4e-11  Score=120.56  Aligned_cols=66  Identities=36%  Similarity=0.635  Sum_probs=60.2

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      ..|.|+||||.+.|+..+|.+|||+||++||||++..     +++...|..|..||++|.|...|..||-.
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-----~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-----PESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-----chhhhhhhhhhcccccccchhhHHhHHHH
Confidence            4678999999999999999999999999999999942     24569999999999999999999999975

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.08  E-value=7.6e-11  Score=106.50  Aligned_cols=53  Identities=30%  Similarity=0.454  Sum_probs=47.3

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcC
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS   64 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLs   64 (564)
                      ...++|+||||+++||.++|+++||+|+++||||+.   |     ....|+.|++||+||.
T Consensus        63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-----s~~~~~kIneAyevL~  115 (116)
T PTZ00100         63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-----STYIASKVNEAKDLLL  115 (116)
T ss_pred             CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-----CHHHHHHHHHHHHHHh
Confidence            346899999999999999999999999999999986   2     2468999999999995

>PHA02624 large T antigen; Provisional

Probab=98.96  E-value=4.2e-10  Score=125.45  Aligned_cols=60  Identities=27%  Similarity=0.393  Sum_probs=55.6

Q ss_pred             CcCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhh
Q 008456            5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY   72 (564)
Q Consensus         5 k~d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~Y   72 (564)
                      ..++|+||||+++|  +..+||+|||++|++||||++   |     +.++|+.|+.||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            35799999999999  999999999999999999997   2     357999999999999999999999

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.90  E-value=1.8e-09  Score=115.26  Aligned_cols=74  Identities=26%  Similarity=0.467  Sum_probs=64.4

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCC-CCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~-g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ..-|+|+||||+.+++..+||++||+|+.++||||-..- +....+-.+.+..|++||..|+|...|..|-.+|.
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt  170 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT  170 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence            456899999999999999999999999999999998320 12445678999999999999999999999988764

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.84  E-value=4.7e-09  Score=101.33  Aligned_cols=71  Identities=23%  Similarity=0.238  Sum_probs=59.9

Q ss_pred             CcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         5 k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      +.|||++|||++.  .+...|++.|+.|...+|||+....+. ....+...-..|++||.+|+||-+|+.|=-.
T Consensus         1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~   74 (173)
T PRK01773          1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA   74 (173)
T ss_pred             CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence            3689999999995  899999999999999999999843321 1224677889999999999999999999764

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.70  E-value=2.5e-08  Score=94.90  Aligned_cols=60  Identities=33%  Similarity=0.397  Sum_probs=49.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456           18 CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus        18 As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      .+..+|+++||+|+++||||+....+. ....+...|..|++||.||+||.+|+.|+-...
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            577899999999999999999743221 223478899999999999999999999998643

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.3e-08  Score=97.39  Aligned_cols=66  Identities=30%  Similarity=0.465  Sum_probs=59.7

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS   74 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs   74 (564)
                      -++|+||.|.|..+.++||+.||+|++..|||||  |. +.+.|...|-.|..||.+|-|+..|..-+.
T Consensus        53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN--~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN--PD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCC--cc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4799999999999999999999999999999999  43 677899999999999999999987766554

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=5.6e-08  Score=102.12  Aligned_cols=181  Identities=21%  Similarity=0.264  Sum_probs=134.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhccCCCCCCCCCCCCCc
Q 008456           17 ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNL   96 (564)
Q Consensus        17 ~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~~~~~~~~~~~~~d~   96 (564)
                      .++...|..+|+..++.+||++...-..........|++|.+||.||++...|..+|.+.. +..          .+   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~-~~~----------~l---   68 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDK-FAE----------AL---   68 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhH-HHh----------cC---
Confidence            3677889999999999999999821000111356789999999999999777778888741 110          00   


Q ss_pred             ccCCCCCCCCCCCCCCCCccchhhhHHHHhHhhHHHHHHhhcCCCcccccCCCCCCCCCChhhhHHHHHHHhcccccccc
Q 008456           97 YSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDF  176 (564)
Q Consensus        97 ~~~F~~s~f~gf~~~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fG~~~s~~e~V~~FY~~W~~F~T~r~F  176 (564)
                               .++......|+..++..|....            .+....++|.+|..+.+...|..||.+|..|.+|+.|
T Consensus        69 ---------~~~~~~~~~~~~~~~~~~~v~~------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y  127 (335)
T KOG0724|consen   69 ---------PLEKRLEDKIEEYIGLVFDVNI------------RESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQY  127 (335)
T ss_pred             ---------ccccccchhHHhhhhhHHHHhh------------hhccCCCccccCccccccccccccCCccccccccccC
Confidence                     1111122334444555554332            1334568899999887778889999999999999999


Q ss_pred             ccccccccCCCCChHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHhH
Q 008456          177 CWVDEYDVMAGPNRKSRRVM-----EEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM  232 (564)
Q Consensus       177 sw~deyd~~~a~nR~~RR~m-----EkeNkK~R~k~kkE~n~~VR~LV~fvkkrDpRv~~~  232 (564)
                      ...++.+.....+|..+|++     .+.|...+.+.+......++.||.++...++++.-.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (335)
T KOG0724|consen  128 PQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWR  188 (335)
T ss_pred             CCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHHhhhcccccccce
Confidence            98887765555889999999     589999999999999999999999999999999754

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.50  E-value=5e-08  Score=66.16  Aligned_cols=26  Identities=58%  Similarity=0.957  Sum_probs=25.4

Q ss_pred             cccccccccccCHHHHHHhHhhHHHH
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQSKKHK  324 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~SkkHk  324 (564)
                      |||++|+|.|.++.+|.+|++|++|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            79999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.10  E-value=1.8e-06  Score=61.28  Aligned_cols=32  Identities=41%  Similarity=0.735  Sum_probs=30.2

Q ss_pred             ccccccccccccCHHHHHHhHhhHHHHHHHHH
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVAD  329 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~  329 (564)
                      .|+|.+|++.|.+..+|.+|.+|++|+++|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.98  E-value=4e-06  Score=55.37  Aligned_cols=25  Identities=52%  Similarity=0.991  Sum_probs=24.4

Q ss_pred             cccccccccccCHHHHHHhHhhHHH
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQSKKH  323 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~SkkH  323 (564)
                      |+|.+|++.|.+..+|..|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999999

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=1.2e-05  Score=93.09  Aligned_cols=56  Identities=34%  Similarity=0.455  Sum_probs=47.4

Q ss_pred             CCCCcCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcC
Q 008456            2 ASEKRCLYEVLGLRKE----CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS   64 (564)
Q Consensus         2 a~~k~d~YevLGv~~~----As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLs   64 (564)
                      ++.-.+-|+||.|+-+    -..+.||++|+|||.+||||||  |     +-.++|..|++||+.|+
T Consensus      1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--P-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--P-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--c-----hHHHHHHHHHHHHHHHH
Confidence            4445678999999863    3447899999999999999999  3     45789999999999998

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=3.1e-05  Score=77.34  Aligned_cols=53  Identities=34%  Similarity=0.585  Sum_probs=47.5

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhh-hcC
Q 008456            7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE-VLS   64 (564)
Q Consensus         7 d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYe-VLs   64 (564)
                      .+|.||||...|+.++++.||..||+.+|||..     +.+...+.|.+|.+||. ||+
T Consensus        48 e~fril~v~e~~~adevr~af~~lakq~hpdsg-----s~~adaa~f~qideafrkvlq  101 (342)
T KOG0568|consen   48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSG-----SEEADAARFIQIDEAFRKVLQ  101 (342)
T ss_pred             HHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-----CccccHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999998     23345789999999998 886

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=97.66  E-value=3.1e-05  Score=82.15  Aligned_cols=39  Identities=38%  Similarity=0.635  Sum_probs=35.4

Q ss_pred             hccCccccccccccccCHHHHHHhHhhHHHHHHHHHHHH
Q 008456          294 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (564)
Q Consensus       294 e~~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~  332 (564)
                      +....+||.+|+|.|.|.+++.+|++||+|+.++..+.+
T Consensus        64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            446678999999999999999999999999999998766

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=97.64  E-value=2.2e-05  Score=71.25  Aligned_cols=36  Identities=36%  Similarity=0.758  Sum_probs=34.0

Q ss_pred             cCccccccccccccCHHHHHHhHhhHHHHHHHHHHH
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR  331 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~  331 (564)
                      ...|||..|.+.|.+.++|+.|.+||.|+++|+.|+
T Consensus        55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~   90 (129)
T KOG3408|consen   55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR   90 (129)
T ss_pred             CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence            457899999999999999999999999999999887

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00063  Score=60.78  Aligned_cols=51  Identities=22%  Similarity=0.337  Sum_probs=43.0

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCCh
Q 008456            8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP   66 (564)
Q Consensus         8 ~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp   66 (564)
                      --.||||.++++.+.||.|+|++-+..|||+...|        -.-..|++|+++|...
T Consensus        58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--------YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--------YLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--------HHHHHHHHHHHHHhcc
Confidence            34599999999999999999999999999999443        2445699999999743

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=96.54  E-value=0.0015  Score=58.35  Aligned_cols=38  Identities=34%  Similarity=0.712  Sum_probs=35.0

Q ss_pred             cCccccccccccccCHHHHHHhHhhHHHHHHHHHHHHH
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES  333 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~  333 (564)
                      ...+||..|.+.|.|+.+|..|.++|=|++.++.|+..
T Consensus        53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev   90 (126)
T COG5112          53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV   90 (126)
T ss_pred             CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence            45789999999999999999999999999999999854

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.19  E-value=0.0038  Score=46.06  Aligned_cols=32  Identities=38%  Similarity=0.647  Sum_probs=20.4

Q ss_pred             cccccccccccc--CHHHHHHhHhhHHHHHHHHH
Q 008456          298 EFYCVLCGKKFK--SEKQWTNHEQSKKHKEKVAD  329 (564)
Q Consensus       298 ~~~C~~C~K~F~--s~~~~~nH~~SkkHk~~~~~  329 (564)
                      -+||..|++.|.  |....++|+.+.+|+.+|++
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            479999999994  34566999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=95.85  E-value=0.0096  Score=65.84  Aligned_cols=51  Identities=35%  Similarity=0.497  Sum_probs=39.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchH---HHHHHHHHHHHHhhhc
Q 008456           13 GLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEVL   63 (564)
Q Consensus        13 Gv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~e---ea~~~F~~I~~AYeVL   63 (564)
                      +|..-.+.+.||++|||.+|..||||.+..|.+..   .|...|-.+++|+...
T Consensus       395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            34456899999999999999999999976664433   4677777778877644

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.012  Score=56.20  Aligned_cols=71  Identities=27%  Similarity=0.455  Sum_probs=56.3

Q ss_pred             CcCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            5 KRCLYEVLGLRK--ECTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         5 k~d~YevLGv~~--~As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      ..+||.++|...  ...++-+.--|.-...++|||+...+.. ....|.+....|++||.+|.||-.|+.|=.-
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk   80 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK   80 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            357999998665  5667777778999999999999643321 2236888899999999999999999999764

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.01  Score=57.43  Aligned_cols=58  Identities=34%  Similarity=0.569  Sum_probs=49.1

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCc---hHHHHHHHHHHHHHhhhc
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVL   63 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~---~eea~~~F~~I~~AYeVL   63 (564)
                      .+.|.+||+...+...+|+++|+++...+|||+-..-+..   ...+...++.|+.||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999997543432   236889999999999753

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.52  E-value=0.0091  Score=38.38  Aligned_cols=22  Identities=32%  Similarity=0.806  Sum_probs=20.6

Q ss_pred             cccccccccccCHHHHHHhHhh
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      |.|..|++.|.+...|..|+++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5799999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PLN02748 tRNA dimethylallyltransferase

Probab=95.18  E-value=0.015  Score=64.54  Aligned_cols=38  Identities=24%  Similarity=0.783  Sum_probs=33.9

Q ss_pred             cCccccccccc-cccCHHHHHHhHhhHHHHHHHHHHHHH
Q 008456          296 RSEFYCVLCGK-KFKSEKQWTNHEQSKKHKEKVADLRES  333 (564)
Q Consensus       296 ~~~~~C~~C~K-~F~s~~~~~nH~~SkkHk~~~~~l~~~  333 (564)
                      -..|+|.+|++ +|..+.+|.-|++|++|+.+++.+++.
T Consensus       416 ~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~  454 (468)
T PLN02748        416 WTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK  454 (468)
T ss_pred             cccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence            35668999997 899999999999999999999988653

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.096  Score=57.57  Aligned_cols=77  Identities=10%  Similarity=0.063  Sum_probs=69.9

Q ss_pred             cCCCCCCCCCChhhhHHHHHHHhccccccccccccccccCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008456          146 EAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKR  225 (564)
Q Consensus       146 ~~P~fG~~~s~~e~V~~FY~~W~~F~T~r~Fsw~deyd~~~a~nR~~RR~mEkeNkK~R~k~kkE~n~~VR~LV~fvkkr  225 (564)
                      .+|.+|        +..||..|.+|+|.--|.|. .|...-...+..++.|...+..++....+.-+..|++++.+++++
T Consensus       127 e~~~~~--------d~~~~ap~fg~~~t~ye~~~-~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~  197 (508)
T KOG0717|consen  127 ELPFLG--------DSKLLYPLFGYSTTDYEQVV-PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQY  197 (508)
T ss_pred             hhhhcc--------CCccccccccCCCCcHHHHH-HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            466666        44789999999999999999 888888999999999999999999999999999999999999999


Q ss_pred             ChhhHh
Q 008456          226 DKRVMD  231 (564)
Q Consensus       226 DpRv~~  231 (564)
                      +.|+..
T Consensus       198 ak~eyN  203 (508)
T KOG0717|consen  198 ARQEYN  203 (508)
T ss_pred             HHHHHH
Confidence            999865

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.08  E-value=0.034  Score=35.23  Aligned_cols=22  Identities=36%  Similarity=0.922  Sum_probs=18.3

Q ss_pred             cccccccccccCHHHHHHhHhh
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      |.|..|++.|.+..+|..|+.+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            5799999999999999999875

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.66  E-value=0.038  Score=36.84  Aligned_cols=23  Identities=39%  Similarity=0.700  Sum_probs=20.9

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+..+|..|.++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            37899999999999999999864

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.33  E-value=0.052  Score=52.49  Aligned_cols=69  Identities=29%  Similarity=0.398  Sum_probs=54.3

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            7 CLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         7 d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      ||.-++|+++.+  ..+.++..|+.+.+.+|||.....+. ....+...+..++.||.+|-||-.|+.|=..
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la   73 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA   73 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            466667777754  44568999999999999999965432 1223678899999999999999999999764

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=92.96  E-value=0.059  Score=52.06  Aligned_cols=35  Identities=23%  Similarity=0.539  Sum_probs=31.2

Q ss_pred             cCccccccccccccCHHHHHHhHhhHHHHHHHHHH
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL  330 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l  330 (564)
                      .--|||.+|+=+|+---+|..|++-|+|..++--+
T Consensus        73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            35689999999999999999999999999987643

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=92.21  E-value=0.049  Score=46.14  Aligned_cols=31  Identities=35%  Similarity=0.724  Sum_probs=26.4

Q ss_pred             ccccccccccccCHHHHHHhHhhHHHHHHHH
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA  328 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~  328 (564)
                      .+.|.+|++.|.|..+|..|++++.|.....
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            5899999999999999999999999987654

>smart00355 ZnF_C2H2 zinc finger

Probab=91.39  E-value=0.16  Score=32.29  Aligned_cols=21  Identities=38%  Similarity=0.779  Sum_probs=19.6

Q ss_pred             cccccccccccCHHHHHHhHh
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQ  319 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~  319 (564)
                      +.|..|++.|.+...|..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999987

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=91.13  E-value=0.12  Score=55.07  Aligned_cols=38  Identities=29%  Similarity=0.560  Sum_probs=34.0

Q ss_pred             ccCccccccccccccCHHHHHHhHhhHHHHHHHHHHHH
Q 008456          295 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (564)
Q Consensus       295 ~~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~  332 (564)
                      ....+||+.|++-|+..+-|..|+.+|-|.+++...+.
T Consensus       235 ~~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         235 WFPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             hccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            35678999999999999999999999999999886655

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.27  E-value=0.24  Score=50.06  Aligned_cols=36  Identities=31%  Similarity=0.680  Sum_probs=33.3

Q ss_pred             cCccccccccccccCHHHHHHhHhhHHHHHHHHHHHH
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~  332 (564)
                      ...+.|.+|+--.+ .+-|.-|.+||+|+.+|..|+.
T Consensus        33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            35679999999999 9999999999999999999994

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=88.21  E-value=0.13  Score=53.09  Aligned_cols=34  Identities=24%  Similarity=0.621  Sum_probs=31.9

Q ss_pred             ccccccccccccCHHHHHHhHhhHHHHHHHHHHH
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR  331 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~  331 (564)
                      -|||..|-|.|..+|.|+-|..|-.|.+.+.+..
T Consensus        25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~   58 (309)
T KOG2837|consen   25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFA   58 (309)
T ss_pred             HHHHHHHHHHhccccccccccCCHHHHHHHHHHH
Confidence            4799999999999999999999999999998775

>PHA02768 hypothetical protein; Provisional

Probab=87.84  E-value=0.31  Score=39.04  Aligned_cols=25  Identities=24%  Similarity=0.650  Sum_probs=22.7

Q ss_pred             ccccccccccccCHHHHHHhHhhHHHH
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQSKKHK  324 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk  324 (564)
                      .|.|..|+|.|....+|..|.++  |.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~   29 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK--HN   29 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh--cC
Confidence            36899999999999999999988  65

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.38  E-value=0.41  Score=37.41  Aligned_cols=27  Identities=33%  Similarity=0.571  Sum_probs=23.5

Q ss_pred             ccccccccccccCHHHHHHhHhhHHHHHHH
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKV  327 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~  327 (564)
                      .-||..|.-.|.+   |..|+.|.+|+.-.
T Consensus         5 ~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    5 PGYCENCRVKYDD---LEEHIQSEKHRKFA   31 (49)
T ss_pred             CccCccccchhhh---HHHHhCCHHHHHHH
Confidence            4599999999986   88999999999654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=85.71  E-value=0.46  Score=37.16  Aligned_cols=29  Identities=28%  Similarity=0.537  Sum_probs=24.1

Q ss_pred             cCccccccccccccCHHHHHHhHhhHHHHHHH
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV  327 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~  327 (564)
                      ...-||..|...|.   -|..|..|++|+.=.
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA   31 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFA   31 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHH
Confidence            34569999999997   578899999999643

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=85.37  E-value=0.83  Score=46.04  Aligned_cols=39  Identities=33%  Similarity=0.604  Sum_probs=30.8

Q ss_pred             cCccccccccccccCHHHHHHhHhhHHHHHHHHHHHHHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFV  335 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~~  335 (564)
                      ..-|-|..|.|.|+-..=+..|+. +||-+.|..+++++.
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~~ev~  113 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVKKEVE  113 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHHHHHH
T ss_pred             CCEECCCCCCcccCChHHHHHHHh-hcCHHHHHHHHHHHH
Confidence            356899999999999999999987 679999998886653

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=84.29  E-value=1.4  Score=40.99  Aligned_cols=49  Identities=24%  Similarity=0.304  Sum_probs=35.8

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcC
Q 008456            8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS   64 (564)
Q Consensus         8 ~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLs   64 (564)
                      -..||||++.++.++|.+.|.+|-...+|++..        ..-.=..|..|.+.|.
T Consensus        60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--------SfYLQSKV~rAKErl~  108 (127)
T PF03656_consen   60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGG--------SFYLQSKVFRAKERLE  108 (127)
T ss_dssp             HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--------CHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999872        2445556788888875

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PHA00616 hypothetical protein

Probab=80.67  E-value=0.86  Score=34.93  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=20.2

Q ss_pred             cccccccccccCHHHHHHhHhh
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      +-|.-|++.|....+|..|.++
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~   23 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLS   23 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHH
Confidence            6799999999999999999954

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	564
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		5e-10
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		7e-10
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		7e-10
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-09
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		1e-08
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-08
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-08
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-08
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		4e-08
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-07
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		5e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		7e-07
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		7e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-06
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-06
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-06
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-06
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		4e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		1e-04

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+         EA A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
          D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+         EA A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
          D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          +++    LY VLGL K  T+D+I+ +Y+KLAL+ HPDK         EA  +F+E+ +A+
Sbjct: 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK----NPDNPEAADKFKEINNAH 67
Query: 61 EVLSDPKERAWYDSHRSQILF 81
           +L+D  +R  YD + S  L+
Sbjct: 68 AILTDATKRNIYDKYGSLGLY 88

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+         EA A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
          D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 7/65 (10%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+VLG++   T +E++ AY+KLAL+ HPDK    G        +F+++  AYEVLSD K+
Sbjct: 9  YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG-------EKFKQISQAYEVLSDAKK 61
Query: 69 RAWYD 73
          R  YD
Sbjct: 62 RELYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 7/65 (10%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+VLG++ + + +E++ AY+K+AL+ HPDK         +   QF+++  AYEVLSD K+
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDK-------NPDGAEQFKQISQAYEVLSDEKK 63
Query: 69 RAWYD 73
          R  YD
Sbjct: 64 RQIYD 68

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YEVL + ++ +++ I+ AY+KLAL+ HPDK  +   ++ EA  +F+++  AYEVLSD K+
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE---NKEEAERRFKQVAEAYEVLSDAKK 68
Query: 69 RAWYDSHRS 77
          R  YD + S
Sbjct: 69 RDIYDRYGS 77

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YEVLG++   + ++I+ AY+KLAL+ HPDK      ++ EA  +F+ +  AYEVLSD K+
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPD---NKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 69 RAWYD 73
          R+ YD
Sbjct: 69 RSLYD 73

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+ LGL +  + +EI+ AY++ AL+ HPDK  + G     A  +F+E+  AY+VLSDP++
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-----AEEKFKEIAEAYDVLSDPRK 60
Query: 69 RAWYDSH 75
          R  +D +
Sbjct: 61 REIFDRY 67

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+LG+ +  + ++++ AY++LAL+ HPDK    G     AT  F+ +  AY VLS+P++
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG-----ATEAFKAIGTAYAVLSNPEK 64
Query: 69 RAWYD 73
          R  YD
Sbjct: 65 RKQYD 69

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
           S+KR  Y++LG+++     EI  AY+KLALQ HPD   Q+   + +A  +F ++  A EV
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEV 437
Query: 63  LSDPKERAWYD 73
           LSDP+ R  +D
Sbjct: 438 LSDPEXRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
           S+KR  Y++LG+++     EI  AY+KLALQ HPD   Q+   + +A  +F ++  A EV
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEV 437
Query: 63  LSDPKERAWYD 73
           LSDP+ R  +D
Sbjct: 438 LSDPEMRKKFD 448

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y++LG+ K  +  +I+ A+ KLA++ HPDK         +A A+F+E+  AYE LSD   
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDK-----NKSPDAEAKFREIAEAYETLSDANR 64
Query: 69 RAWYDS 74
          R  YD+
Sbjct: 65 RKEYDT 70

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          YE+L + +  + D+I+ AY++ ALQ HPDK      ++  A  +F+E+  AYEVLSD  +
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPD---NKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 69 RAWYDSHRSQILFSDLNSASNCGP 92
          R  YD +  + L     + +  GP
Sbjct: 62 REIYDRYGREGL-----TGTGTGP 80

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
          LY++LG+       E++  Y+K AL+ HPDK           T +F+E+  A+E+L+DP+
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEKFKEISEAFEILNDPQ 62
Query: 68 ERAWYDSH 75
          +R  YD +
Sbjct: 63 KREIYDQY 70

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
           Y +LG+ K  ++ EIR A+KKLAL+ HPDK      +   A   F ++  AYEVL D  
Sbjct: 4  FYSLLGVSKTASSREIRQAFKKLALKLHPDK----NPNNPNAHGDFLKINRAYEVLKDED 59
Query: 68 ERAWYDSH 75
           R  YD +
Sbjct: 60 LRKKYDKY 67

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y++LG+ +  +  EI+ AY +LA + HPD    +     +A  +F +L  AYEVLSD  +
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPD----TNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 69 RAWYDSHRS 77
          R  YD++ S
Sbjct: 66 RKQYDAYGS 74

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 8  LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
           Y +LG+ K  ++ EIR A+KKLAL+ HPDK      +   A   F ++  AYEVL D  
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDK----NPNNPNAHGDFLKINRAYEVLKDED 78
Query: 68 ERAWYDSH 75
           R  YD +
Sbjct: 79 LRKKYDKY 86

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y VLG+ +  +  +I+ AYKKLA + HPDK    G     A  +F ++  AYE+LS+ ++
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-----AEDRFIQISKAYEILSNEEK 74
Query: 69 RAWYDSHRS 77
          R  YD + S
Sbjct: 75 RTNYDHYGS 83

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
          SE +  Y ++G++       I++AY++LA + HPD        + +A A+F+E+  A+EV
Sbjct: 2  SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD-----VSKEPDAEARFKEVAEAWEV 56
Query: 63 LSDPKERAWYD 73
          LSD + RA YD
Sbjct: 57 LSDEQRRAEYD 67

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          A E +  Y +LG++       I++AY++LA + HPD   ++     +A A+F++L  A+E
Sbjct: 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWE 78
Query: 62 VLSDPKERAWYD 73
          VL D + RA YD
Sbjct: 79 VLKDEQRRAEYD 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	564
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-19
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-18
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	7e-17
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	7e-17
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-16
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-16
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-16
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-16
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-16
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	4e-16
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-16
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	6e-16
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	7e-16
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	9e-16
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-15
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-15
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-15
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-15
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-15
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-14
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	5e-14
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	6e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-09
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-09
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	5e-09
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-08
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-07
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-07
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-06
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	4e-06
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	6e-06
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	8e-04

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKL--VQSGLSQAEATAQFQELVHAY 60
             K+  Y +LG        +++  Y+KL L  HPDK        +  E   +F E+  A+
Sbjct: 7   MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGK--GFYKV 118
           ++L + + +  YD  R +    DL +         L     N     +  S +  G Y V
Sbjct: 67  KILGNEETKREYDLQRCE---DDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSV 123

Query: 119 YSDLFNKIYSVE 130
             D   ++  + 
Sbjct: 124 SKDEAEEVSLIS 135

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 9/107 (8%)

Query: 1   MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           +++    LY VLGL K  T+D+I+ +Y+KLAL+ HPDK         EA  +F+E+ +A+
Sbjct: 12  LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK----NPDNPEAADKFKEINNAH 67

Query: 61  EVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSG 107
            +L+D  +R  YD + S      L  A   G   N+ +YF +   SG
Sbjct: 68  AILTDATKRNIYDKYGSL----GLYVAEQFGE-ENVNTYFVSGPSSG 109

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 75.0 bits (185), Expect = 7e-17
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          +S     YEVLG++   + ++I+ AY+KLAL+ HPDK   +  ++ EA  +F+ +  AYE
Sbjct: 5  SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDK---NPDNKEEAEKKFKLVSEAYE 61

Query: 62 VLSDPKERAWYD 73
          VLSD K+R+ YD
Sbjct: 62 VLSDSKKRSLYD 73

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 74.2 bits (183), Expect = 7e-17
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 7/70 (10%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
          ++   Y+VLG++ + + +E++ AY+K+AL+ HPDK         +   QF+++  AYEVL
Sbjct: 6  KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDK-------NPDGAEQFKQISQAYEVL 58

Query: 64 SDPKERAWYD 73
          SD K+R  YD
Sbjct: 59 SDEKKRQIYD 68

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          +S     YEVL + ++ +++ I+ AY+KLAL+ HPDK   +  ++ EA  +F+++  AYE
Sbjct: 5  SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDK---NPENKEEAERRFKQVAEAYE 61

Query: 62 VLSDPKERAWYD 73
          VLSD K+R  YD
Sbjct: 62 VLSDAKKRDIYD 73

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          +  LY++LG+    T  +I++AY +     HPD+   SG ++A    +F  +  AY VL 
Sbjct: 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDR--NSGSAEAA--ERFTRISQAYVVLG 71

Query: 65 DPKERAWYD 73
              R  YD
Sbjct: 72 SATLRRKYD 80

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+    G  +AE  A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR--NQGDKEAE--AKFKEIKEAYEVLT 57

Query: 65 DPKERAWYD 73
          D ++RA YD
Sbjct: 58 DSQKRAAYD 66

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 73.0 bits (180), Expect = 2e-16
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 5/65 (7%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y+ LGL +  + +EI+ AY++ AL+ HPDK       +  A  +F+E+  AY+VLSDP++
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDK-----NKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 69 RAWYD 73
          R  +D
Sbjct: 61 REIFD 65

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          + +    Y +LG  +  + ++I + +K  AL+ HPDK       +A     FQ+L  A E
Sbjct: 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDK--HPENPKAV--ETFQKLQKAKE 71

Query: 62 VLSDPKERAWYD 73
          +L++ + RA YD
Sbjct: 72 ILTNEESRARYD 83

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          +++     Y VLG+ +  +  +I+ AYKKLA + HPDK          A  +F ++  AY
Sbjct: 12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDK-----NKDPGAEDRFIQISKAY 66

Query: 61 EVLSDPKERAWYD 73
          E+LS+ ++R  YD
Sbjct: 67 EILSNEEKRTNYD 79

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 6  RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65
             YE+L + +  + D+I+ AY++ ALQ HPDK   +  ++  A  +F+E+  AYEVLSD
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDK---NPDNKEFAEKKFKEVAEAYEVLSD 58

Query: 66 PKERAWYD 73
            +R  YD
Sbjct: 59 KHKREIYD 66

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 76.1 bits (187), Expect = 5e-16
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 9  YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
          Y +LG+ K  ++ EIR A+KKLAL+ HPDK        A     F ++  AYEVL D   
Sbjct: 5  YSLLGVSKTASSREIRQAFKKLALKLHPDK--NPNNPNAH--GDFLKINRAYEVLKDEDL 60

Query: 69 RAWYDSH 75
          R  YD +
Sbjct: 61 RKKYDKY 67

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
          ++  LY++LG+       E++  Y+K AL+ HPDK           T +F+E+  A+E+L
Sbjct: 6  KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDK-------PTGDTEKFKEISEAFEIL 58

Query: 64 SDPKERAWYD 73
          +DP++R  YD
Sbjct: 59 NDPQKREIYD 68

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 72.0 bits (177), Expect = 7e-16
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
               Y++LG+ K  +  +I+ A+ KLA++ HPDK         +A A+F+E+  AYE L
Sbjct: 5  SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDK-----NKSPDAEAKFREIAEAYETL 59

Query: 64 SDPKERAWYD 73
          SD   R  YD
Sbjct: 60 SDANRRKEYD 69

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          +      Y++LG+ +  +  EI+ AY +LA + HPD          +A  +F +L  AYE
Sbjct: 3  SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDT----NKDDPKAKEKFSQLAEAYE 58

Query: 62 VLSDPKERAWYD 73
          VLSD  +R  YD
Sbjct: 59 VLSDEVKRKQYD 70

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
               YE+LG+ +  + ++++ AY++LAL+ HPDK          AT  F+ +  AY VL
Sbjct: 5  SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDK-----NHAPGATEAFKAIGTAYAVL 59

Query: 64 SDPKERAWYD 73
          S+P++R  YD
Sbjct: 60 SNPEKRKQYD 69

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDK--LVQSGLSQAEATAQFQELVHAY 60
          + K+  Y +LG        +++  Y+KL L  HPDK        +  E   +F E+  A+
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 61 EVLSDPKERAWYDSHRS 77
          ++L + + +  YD  RS
Sbjct: 73 KILGNEETKKKYDLQRS 89

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 3  SEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
           E   L ++LGL +    +   +R AY K   + HPDK             + +++   Y
Sbjct: 8  EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK--------GGDEEKMKKMNTLY 59

Query: 61 EVLSDPKERAWYD 73
          + + D  + A   
Sbjct: 60 KKMEDGVKYAHQP 72

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 26/124 (20%)

Query: 4   EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQ-AEATAQFQELVHAYEV 62
           E +  Y +LG++       I++AY++LA + HPD      +S+  +A A+F++L  A+EV
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPD------VSKENDAEAKFKDLAEAWEV 79

Query: 63  LSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDL 122
           L D + RA YD                       +           +       + + D+
Sbjct: 80  LKDEQRRAEYDQLWQ-------------------HRNDPGFGRQRQTHEQSYSQQDFDDI 120

Query: 123 FNKI 126
           F+ +
Sbjct: 121 FSSM 124

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 5  KRCLYEVLGLRKECTT-DEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
              Y+VL + +E     ++  AY+ LA + HPD+ V++   +  A  +F+ +  AYE L
Sbjct: 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRVIATAYETL 72

Query: 64 SDPKERAWYD 73
           D + +  YD
Sbjct: 73 KDDEAKTNYD 82

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 1  MASEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVH 58
          M  E   L ++LGL +    +   +R AY K   + HPDK             + +++  
Sbjct: 3  MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK--------GGDEEKMKKMNT 54

Query: 59 AYEVLSDPKERAWYD 73
           Y+ + D  + A   
Sbjct: 55 LYKKMEDGVKYAHQP 69

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 66.7 bits (163), Expect = 5e-14
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 1  MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
            S  + +  V+    +    E +   ++L L+ HPDK   +  +   A   F+ L +  
Sbjct: 11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDK---NPENHDIANEVFKHLQNEI 67

Query: 61 EVLSDPKERAWYDSHRSQIL 80
            L    ++A+ D +  +  
Sbjct: 68 NRLE---KQAFLDQNADRAS 84

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 66.7 bits (163), Expect = 6e-14
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           +  +++LG++   + DE+  AY+KLA+  HPDK V  G     +   F+ +V+A   L 
Sbjct: 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-----SEDAFKAVVNARTALL 80

Query: 65 DPKERAWYD 73
             +     
Sbjct: 81 KNIKSGPSS 89

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.8 bits (179), Expect = 8e-14
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 3   SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
           S+KR  Y++LG+++     EI  AY+KLALQ HPD   Q+   + +A  +F ++  A EV
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEV 437

Query: 63  LSDPKERAWYDS 74
           LSDP+ R  +D 
Sbjct: 438 LSDPEMRKKFDD 449

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 67.1 bits (163), Expect = 8e-12
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
              +  Y +LG+ K  ++ EIR A+KKLAL+ HPDK   +      A   F ++  AYE
Sbjct: 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN----PNAHGDFLKINRAYE 72

Query: 62 VLSDPKERAWYDSH 75
          VL D   R  YD +
Sbjct: 73 VLKDEDLRKKYDKY 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 62/513 (12%), Positives = 124/513 (24%), Gaps = 162/513 (31%)

Query: 20  TDEIRSAYKKLALQRHPD-------KLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72
           T E +  YK +              K VQ       +  +   ++ +     D       
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS----KDAVSGTLR 66

Query: 73  DSHRSQILFSDLNSASNCGPVPNLYSYFSN-----------TAFSGYSDSGKGFYKVYSD 121
                  LF  L S         +   F             +             ++Y +
Sbjct: 67  -------LFWTLLSKQE-----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 122 LFNKIYSVEVSYVK----------KLGLGLDVLREAPI-----MG---------NLESPY 157
             +++Y+    + K          KL   L  LR A       +          ++   Y
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 158 GQVTAFYN--YWLGFS------TVM----DFCWVDEYDVMAGPNRKSR---RVMEEENKK 202
                     +WL         TV+       +  + +  +  +  S    R+   + + 
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 203 LRKKAKREYNE---------TVRELAAF-------VKKRDKRVMDMMVKKNEEIERKREE 246
            R    + Y             +   AF       +  R K+V D +             
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS----AATTTHIS 290

Query: 247 EKERKKRLEKERMER--AKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLC 304
                  L  + ++    K      +              + L  E      +     + 
Sbjct: 291 LDHHSMTLTPDEVKSLLLK------YLDCR---------PQDLPREV--LTTNPRRLSII 333

Query: 305 GKKFKSEK-QWTNHEQSKKHKEKVADLRESFV---DEDEVMADFGELDGEVEELGERFKD 360
            +  +     W N +      +K+  + ES +   +  E    F  L   V      F  
Sbjct: 334 AESIRDGLATWDNWKHVNC--DKLTTIIESSLNVLEPAEYRKMFDRL--SV------FPP 383

Query: 361 NVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNML 420
           +  +                 + S  +                   +    D    VN L
Sbjct: 384 SAHIPT--------------ILLSLIWF------------------DVIKSDVMVVVNKL 411

Query: 421 --KAMLSGHKNRKRVAVRKEDEVLKTEAHVENE 451
              +++   K  K   +      L+ +  +ENE
Sbjct: 412 HKYSLVE--KQPKESTISIPSIYLELKVKLENE 442

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 9  YEVLGLRKECTTD--EIRSAYKKLALQRHPDKLV-QSGLSQAEATAQFQELVHAYEVLSD 65
          + + GL      D   +   ++ L  Q HPDK    S   Q  A  Q   +  A++ L  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 66 PKERAWYDSHRSQI 79
          P  RA Y       
Sbjct: 64 PLMRAEYLLSLHGF 77

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 3  SEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          ++K  L E+L L ++   D   ++ AYK+ +L  HPDK          + A  QEL   +
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK--------GGSHALMQELNSLW 59

Query: 61 EVLSDPKERAWYD 73
                      +
Sbjct: 60 GTFKTEVYNLRMN 72

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 4   EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
                ++ +G+    T ++++  Y+K  L  HPDK       +  A   F EL  A+   
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKMIFMELNDAWSEF 173

Query: 64  SDPKERAWY 72
            +  ++  Y
Sbjct: 174 ENQGQKPLY 182

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 9   YEVLGLRKECTTD--EIRSAYKKLALQRHPDKLV-QSGLSQAEATAQFQELVHAYEVLSD 65
           + ++   +    D  +++  Y++L    HPD    +S   +  +      +  AY+ L  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 66  PKERAWYD 73
           P  R  Y 
Sbjct: 106 PLSRGLYL 113

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 14/77 (18%)

Query: 9  YEVLGLRKECT-------TDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
          YE+                  +R  Y++L  Q HPD          + + Q   L  AY 
Sbjct: 14 YELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDM-------AQQGSEQSSTLNQAYH 66

Query: 62 VLSDPKERAWYDSHRSQ 78
           L DP  R+ Y     +
Sbjct: 67 TLKDPLRRSQYMLKLLR 83

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAE---ATAQFQELVHAYEVLS 64
           ++ + L      + +R +Y++  L  HPDKL Q G S  +   A   F+ L  A++  +
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 402

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 284 EEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMAD 343
           E       +  +    YC  C + FK+   + +H   K HK+  +  R     E ++   
Sbjct: 278 EHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRY 337

Query: 344 FGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFG 403
              L+ E        +  +     E  + +  L+   +  +           +  +    
Sbjct: 338 LKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQKYEAPAY----------DSTEKEGA 387

Query: 404 KEDEDEDEDADDE 416
           ++ + E  D   +
Sbjct: 388 EQVDGEQRDGQLQ 400

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Length = 124

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 273 IDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332
           +  +G      +   E +          C+ C + F        H +SK HK+++  L  
Sbjct: 25  LRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84

Query: 333 SFVDEDEVMA 342
               ++E   
Sbjct: 85  EPYSQEEAER 94

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
               ++ +G+    T ++++  Y+K  L  HP K       +  A   F EL  A+   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQP-YEQYAKMIFMELNDAWSEF 89

Query: 64 SD 65
           +
Sbjct: 90 EN 91

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 46/273 (16%), Positives = 110/273 (40%), Gaps = 50/273 (18%)

Query: 190  RKSRRVMEEENKKLRKKAKREY------NETVRELAAFVKKRDKRVMDMMVKKNEEIERK 243
             +    + EE   L++K + E        E    LAA  ++ ++ + +M   + EE E +
Sbjct: 884  EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME-ARIEEEEER 942

Query: 244  REEEKERKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVL 303
             ++ +  KK+++++ ++  ++ EE   AR   + +    + +  + E+      +     
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN--- 999

Query: 304  CGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVG 363
               K   E+        K  +E+V+DL  +  +E+E   +  +L  + E +    +  + 
Sbjct: 1000 --NKLTKER--------KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 364  VEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNMLKAM 423
             EE+            +++E                    ++ E E  D  +++  L+A 
Sbjct: 1050 KEEKSR----------QELEKIK-----------------RKLEGESSDLHEQIAELQAQ 1082

Query: 424  LSGHKNRKRVAVRKEDEVLKTEAHVENEIGESE 456
            ++  K +     +KE+E+    A +E+E  +  
Sbjct: 1083 IAELKAQLA---KKEEELQAALARLEDETSQKN 1112

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 31/236 (13%), Positives = 82/236 (34%), Gaps = 23/236 (9%)

Query: 190  RKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKE 249
             +  + +  +       A+  Y+ T++ +        + +    +KK +   R  E  K+
Sbjct: 862  LREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921

Query: 250  RKKRLEKERMERAKRYEEPAWARIDDEGDNEVGNEEGLEEEEIEKKRSEFYCVLCGKKFK 309
                LE + M+  ++ +E                 +  +    +    E       +K +
Sbjct: 922  LHIGLENKIMQLQRKIDE---------------QNKEYKSLLEKMNNLEITYSTETEKLR 966

Query: 310  SEKQW--TNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEER 367
            S+ +    + E++K    +V  L+E      + +         +EE  +++K        
Sbjct: 967  SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026

Query: 368  EIGSGVGGLSGD-EDVESEFFDVADGVEVNEVDDRFGKEDEDEDEDADDEVNMLKA 422
            E+      L  + E++     D     +  E+ +   K+  +E +  + ++N  + 
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHD-----QAKEITETMEKKLVEETKQLELDLNDERL 1077

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 9  YEVLGLRKECTT-DEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
           ++L L +   T  +++  ++K+ L  HPDK    G S   A     ++  A + L    
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDK----GGSPFLA----TKINEAKDFLEKRG 68

Query: 68 ER 69
            
Sbjct: 69 IS 70

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 286 GLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327
            LE E  E  +    C+ CG  F+S +  + H    KH +KV
Sbjct: 68  LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	564
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.78
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.77
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.77
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.77
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.76
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.75
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.75
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.75
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.75
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.74
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.74
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.74
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.73
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.73
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.72
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.68
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.66
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.65
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.64
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.63
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.61
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.59
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.58
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.58
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.56
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.55
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.55
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.55
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.53
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.52
2guz_A	71	Mitochondrial import inner membrane translocase su	99.48
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.48
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.85
2guz_B	65	Mitochondrial import inner membrane translocase su	98.4
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	98.06
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.34
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.53
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	96.29
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.98
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	94.87
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	93.37
1ard_A	29	Yeast transcription factor ADR1; transcription reg	92.85
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	92.82
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	92.81
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	92.1
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	91.78
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	91.73
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	91.71
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	91.63
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	91.62
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.6
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	90.85
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.48
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.47
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.26
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	91.18
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	91.16
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.08
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	90.79
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.77
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.63
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	89.49
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	89.38
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	89.84
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.73
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	89.63
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.47
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	89.46
1paa_A	30	Yeast transcription factor ADR1; transcription reg	89.37
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	89.33
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.09
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.02
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	89.02
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.95
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	88.92
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.77
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.74
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.73
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.72
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.69
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	88.68
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.66
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.66
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.56
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	88.49
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	88.47
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.44
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.42
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.42
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.34
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.34
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	88.31
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.28
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.25
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	88.23
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	88.19
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.17
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.16
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	88.16
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.09
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.05
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	88.04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.03
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.01
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.97
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.97
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	87.95
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.95
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.94
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.85
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.83
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.8
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	87.78
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.77
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.69
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	87.67
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.64
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	87.61
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.6
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	87.58
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	87.57
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.56
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	87.56
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.54
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	87.52
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.52
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	87.46
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	87.45
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.4
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.37
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.34
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.34
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.32
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.31
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.26
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.22
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.2
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	87.19
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.15
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.02
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.99
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	86.98
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.97
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.92
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.92
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	86.89
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.85
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.81
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	86.81
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	86.79
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.72
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.68
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.66
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.64
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.64
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.49
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	86.42
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.4
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	86.38
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.38
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.37
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.26
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	86.08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	86.06
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	85.93
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.9
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.9
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.83
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.65
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.61
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	85.58
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	85.3
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.24
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	84.99
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	84.99
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	84.93
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.8
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	84.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	84.07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	84.07
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.07
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	84.06
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	83.93
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	83.49
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	83.01
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	82.5
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	82.25
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	82.15
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	81.87
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	81.54
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	81.47
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	81.27
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	81.25
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	81.06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	80.75
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	80.7
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	80.24
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	80.12

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.78  E-value=9.8e-20  Score=159.05  Aligned_cols=72  Identities=46%  Similarity=0.741  Sum_probs=64.7

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      ..|||+||||+++||.++||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||..+...+
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQ--G--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCT--T--TCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC--C--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            468999999999999999999999999999999993  2  23578999999999999999999999999876543

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=2.4e-19  Score=149.94  Aligned_cols=73  Identities=42%  Similarity=0.657  Sum_probs=65.9

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      +...|||+||||+++|+.++||+|||+|+++||||++  ++ ..+.+.+.|+.|+.||+||+||.+|+.||..+..
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKN--PE-NKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTC--ST-THHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            3467999999999999999999999999999999999  33 3467899999999999999999999999998653

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.77  E-value=3.1e-19  Score=147.73  Aligned_cols=72  Identities=38%  Similarity=0.658  Sum_probs=64.7

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (564)
                      ..|||+||||+++||.++||+|||+|+++||||++..     +.+.+.|+.|+.||+||+||.+|+.||.++...+.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-----PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            3689999999999999999999999999999999932     24789999999999999999999999998765433

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=4.7e-19  Score=150.55  Aligned_cols=75  Identities=36%  Similarity=0.617  Sum_probs=67.7

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhcc
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (564)
                      ....|||+||||+++|+.++||+|||+|+++||||++.     .+.+.+.|+.|++||+||+||.+|+.||..+...+.+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   78 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-----SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS   78 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-----SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence            45679999999999999999999999999999999993     2468999999999999999999999999998766543

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=4.6e-19  Score=151.53  Aligned_cols=75  Identities=40%  Similarity=0.639  Sum_probs=66.9

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF   81 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~   81 (564)
                      ...|||+||||+++|+..+||+|||+|+++||||++  ++ ..+.+.+.|+.|++||+||+||.+|+.||..+...+.
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   81 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKN--PD-NKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR   81 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTC--SS-CSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--Cc-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            467999999999999999999999999999999999  33 3457899999999999999999999999998765433

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=6.5e-19  Score=146.09  Aligned_cols=70  Identities=37%  Similarity=0.657  Sum_probs=64.0

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      +...|||+||||+++|+..+||+|||+|+++||||++.     .+.+.+.|+.|++||+||+||.+|+.||..+.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-----~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-----APGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-----SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            34679999999999999999999999999999999993     24688999999999999999999999999765

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=6.9e-19  Score=146.15  Aligned_cols=71  Identities=37%  Similarity=0.590  Sum_probs=64.3

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      +...|||+||||+++|+..+||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||.++.
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNK--D--DPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCS--S--CTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            45679999999999999999999999999999999993  2  23588999999999999999999999999764

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=6.7e-19  Score=153.25  Aligned_cols=72  Identities=39%  Similarity=0.636  Sum_probs=64.4

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      +|||+||||+++||.++||+|||+|+++||||++  ++ ..+.+.+.|+.|++||+||+||.+|+.||..+...+
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~--~~-~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~   73 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKN--PD-NKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL   73 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTC--CS-CCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--Cc-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            6899999999999999999999999999999999  33 345789999999999999999999999999876443

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=3.7e-19  Score=157.24  Aligned_cols=75  Identities=41%  Similarity=0.661  Sum_probs=67.2

Q ss_pred             CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         2 a~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      ++...+||+||||+++|+..+||+|||+|+++||||++  ++  .+.+.+.|+.|++||+||+||.+|+.||.++...+
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~--~~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   87 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKN--PD--NPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL   87 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTS--TT--CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCC--CC--cHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence            45668999999999999999999999999999999999  32  34689999999999999999999999999876543

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=1.1e-18  Score=148.40  Aligned_cols=71  Identities=37%  Similarity=0.563  Sum_probs=64.3

Q ss_pred             CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         2 a~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      +....|||+||||+++|+..+||+|||+|+++||||++..     +.+.+.|+.|++||+||+||.+|+.||.++.
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-----PGAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-----TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            3456799999999999999999999999999999999932     3478999999999999999999999999764

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.74  E-value=1.2e-18  Score=142.77  Aligned_cols=67  Identities=40%  Similarity=0.744  Sum_probs=60.8

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ...+||+||||+++||..+||+|||+|+++||||++  ++     +.+.|+.|+.||+||+||.+|+.||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~--~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PD-----GAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTC--TT-----CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--cC-----HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            457999999999999999999999999999999999  43     25789999999999999999999999764

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.9e-18  Score=148.10  Aligned_cols=72  Identities=36%  Similarity=0.676  Sum_probs=64.9

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhcc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (564)
                      ...|||+||||+++||..+||+|||+|+++||||++  ++     ..+.|+.|++||+||+||.+|+.||.++...+..
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~--~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKP--TG-----DTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTST--TC-----CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-----hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            457899999999999999999999999999999999  43     2459999999999999999999999998776654

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.73  E-value=1.1e-18  Score=149.28  Aligned_cols=74  Identities=28%  Similarity=0.479  Sum_probs=64.4

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCC--CchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSG--LSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g--~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ...|||+||||+++|+..+||+|||+|+++||||++....  .....+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            4579999999999999999999999999999999983111  1235689999999999999999999999999754

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=3.8e-18  Score=148.10  Aligned_cols=70  Identities=34%  Similarity=0.577  Sum_probs=63.3

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      +...|||+||||+++|+.++||+|||+|+++||||++  ++  .+.+.+.|+.|++||+||+||.+|+.||...
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~--~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRN--SG--SAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTC--SS--CSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            3457899999999999999999999999999999999  32  2468899999999999999999999999854

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=2.3e-18  Score=152.73  Aligned_cols=71  Identities=32%  Similarity=0.512  Sum_probs=64.4

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      +...|||+||||+++|+..+||+|||+|+++||||++.  +  .+.+.+.|+.|++||+||+||.+|+.||.++.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   87 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHP--E--NPKAVETFQKLQKAKEILTNEESRARYDHWRR   87 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCT--T--CSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence            34689999999999999999999999999999999993  2  23589999999999999999999999999865

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.68  E-value=1.2e-17  Score=147.19  Aligned_cols=74  Identities=27%  Similarity=0.443  Sum_probs=65.3

Q ss_pred             CCCcCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            3 SEKRCLYEVLGLRKEC-TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         3 ~~k~d~YevLGv~~~A-s~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ....|||+||||+++| |..+||+|||+|+++||||++.. ....+.+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            4568999999999999 99999999999999999999932 12345789999999999999999999999999753

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.66  E-value=4.5e-17  Score=151.79  Aligned_cols=75  Identities=27%  Similarity=0.490  Sum_probs=65.3

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCC--chHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGL--SQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ   78 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~--~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~   78 (564)
                      ...|||+||||+++|+.++||+|||+|+++||||++..++.  ..+.|.+.|+.|++||+||+||.+|+.||..+..
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~   84 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE   84 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence            46799999999999999999999999999999999954321  2335789999999999999999999999986643

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.65  E-value=6.6e-17  Score=155.00  Aligned_cols=71  Identities=41%  Similarity=0.626  Sum_probs=64.4

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL   80 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l   80 (564)
                      .|||+||||+++||.++||+|||+|+++||||++  ++  .+.+.+.|+.|++||+||+||.+|+.||.++...+
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~--~~--~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~   72 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKN--PN--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   72 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGC--TT--CTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence            6899999999999999999999999999999999  32  23588999999999999999999999999876543

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=8.7e-17  Score=137.37  Aligned_cols=62  Identities=29%  Similarity=0.476  Sum_probs=56.5

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAW   71 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~   71 (564)
                      ..|||+||||+++|+..+||+|||+|+++||||++..     ..+.+.|+.|++||+||+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-----PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-----TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHHCCcccccC
Confidence            4799999999999999999999999999999999943     3478899999999999999998864

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.63  E-value=2.1e-17  Score=171.79  Aligned_cols=69  Identities=36%  Similarity=0.577  Sum_probs=0.0

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      +..+|||+||||+++||.++||+|||+||++||||++.  +   ..|.++|+.|++||+||+||.+|+.||.++
T Consensus        25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~--~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   93 (329)
T 3lz8_A           25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK--E---NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW   93 (329)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCC--C---hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence            44589999999999999999999999999999999993  2   258899999999999999999999999873

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.59  E-value=8.2e-16  Score=146.10  Aligned_cols=70  Identities=26%  Similarity=0.354  Sum_probs=61.3

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            7 CLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         7 d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      |||+||||++++  |..+||+|||+|+++||||++...+. ....|...|+.|+.||+||+||.+|+.||..+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  99999999999999999999943211 12247889999999999999999999999864

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.58  E-value=3.6e-16  Score=133.50  Aligned_cols=64  Identities=20%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhh
Q 008456            3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKER   69 (564)
Q Consensus         3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR   69 (564)
                      +...++|+||||+++||.++||+|||+|+++||||++  ++ ..+.|.+.|+.|++||+||+|...|
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~--~~-~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKN--PE-NHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTS--SS-CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC-chHHHHHHHHHHHHHHHHHHhhccc
Confidence            3456899999999999999999999999999999999  43 3467899999999999999998766

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.58  E-value=1.5e-16  Score=142.00  Aligned_cols=63  Identities=24%  Similarity=0.316  Sum_probs=58.2

Q ss_pred             cCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            6 RCLYEVLGLRKECTT--DEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         6 ~d~YevLGv~~~As~--~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      .+||+||||+++|+.  .+||+|||+|+++||||++  ++      .++|+.|+.||+||+||.+|+.||.++
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~--~~------~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG--GD------EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTC--CT------TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCC--cc------HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            579999999999999  9999999999999999998  32      368999999999999999999999764

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.56  E-value=2.1e-15  Score=147.43  Aligned_cols=72  Identities=19%  Similarity=0.302  Sum_probs=61.7

Q ss_pred             CCcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            4 EKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         4 ~k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      ...|||+||||+++  ++..+||+|||+|+++||||++...+. ....|.+.|+.|++||+||+||.+|+.||..
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            35799999999986  799999999999999999999943221 1234788999999999999999999999974

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.55  E-value=1.5e-15  Score=133.81  Aligned_cols=63  Identities=25%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCc---hHHHHHHHHHHHHHhhhcCChh
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVLSDPK   67 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~---~eea~~~F~~I~~AYeVLsDp~   67 (564)
                      ...|||.|||++. ||..+||+|||+||++|||||+..++.+   ...|.++|+.|++||+||+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3579999999996 9999999999999999999999533322   2257899999999999999985

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.55  E-value=1.4e-15  Score=145.83  Aligned_cols=67  Identities=22%  Similarity=0.403  Sum_probs=59.2

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY   72 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~Y   72 (564)
                      ..|||+||||+++||..+||+|||+|+++||||++.... ....|.+.|+.|++||+||+||.+|+.|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~-~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCT-THHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcc-hHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            368999999999999999999999999999999994221 2234899999999999999999999987

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.55  E-value=4.5e-16  Score=148.36  Aligned_cols=65  Identities=23%  Similarity=0.312  Sum_probs=57.0

Q ss_pred             CcCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            5 KRCLYEVLGLRKECT--TDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         5 k~d~YevLGv~~~As--~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ..+||+||||+++|+  .++||+|||+||+++|||++  ++      .++|+.|++||+||+||.+|+.||.+|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~--~~------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG--GD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC-----C------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCC--CC------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            368999999999999  69999999999999999998  32      3689999999999999999999999874

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.53  E-value=1.5e-15  Score=126.99  Aligned_cols=60  Identities=27%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhh
Q 008456            6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD   73 (564)
Q Consensus         6 ~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YD   73 (564)
                      .++|+||||+++  ||..+||+|||+|+++||||++  .      +.+.|+.|++||+||+||..|..++
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~--~------~~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG--G------SHALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS--C------CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--C------CHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            469999999999  9999999999999999999998  2      2578999999999999999998754

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.52  E-value=3.2e-15  Score=128.77  Aligned_cols=58  Identities=24%  Similarity=0.430  Sum_probs=51.4

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCc-hHHHHHHHHHHHHHhhhcCC
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS-QAEATAQFQELVHAYEVLSD   65 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~-~eea~~~F~~I~~AYeVLsD   65 (564)
                      .++|++|||++.||..+||+|||+||++|||||+  ++.. ...|...|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~--~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKA--TGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHH--TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCC--CCchhHhHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999  4322 23588999999999999964

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.48  E-value=5.8e-15  Score=120.83  Aligned_cols=59  Identities=20%  Similarity=0.315  Sum_probs=51.9

Q ss_pred             CCcCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhh
Q 008456            4 EKRCLYEVLGLRK-ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERA   70 (564)
Q Consensus         4 ~k~d~YevLGv~~-~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~   70 (564)
                      ...++|+||||++ +||.++||+|||+|+++||||++   |     ....|+.|++||+||+|+..|+
T Consensus        12 ~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g-----~~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           12 NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---G-----SPFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             CHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---C-----CHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---C-----CHHHHHHHHHHHHHHhhhhhcC
Confidence            3468999999999 79999999999999999999997   2     2359999999999999987663

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.48  E-value=7.5e-15  Score=140.78  Aligned_cols=67  Identities=28%  Similarity=0.434  Sum_probs=59.6

Q ss_pred             CCCcCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            3 SEKRCLYEVL------GLRK-ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         3 ~~k~d~YevL------Gv~~-~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      +...|||+||      |+++ +||..+||+|||+|+++||||++  ++     +...|+.|++||+||+||.+|+.||..
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~--~~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA--QQ-----GSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSC--CS-----CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCC--cc-----HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            3467999999      4665 89999999999999999999999  32     567899999999999999999999985


Q ss_pred             c
Q 008456           76 R   76 (564)
Q Consensus        76 r   76 (564)
                      .
T Consensus        81 l   81 (181)
T 3uo3_A           81 L   81 (181)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.45  E-value=1e-14  Score=165.10  Aligned_cols=75  Identities=39%  Similarity=0.581  Sum_probs=40.9

Q ss_pred             CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhcc
Q 008456            4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (564)
Q Consensus         4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (564)
                      ...|||+||||+++||.++||+|||+|+++||||++  ++  .+.|.++|+.|++||+||+||.+|+.||.+|...+..
T Consensus        19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~--~~--~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~   93 (780)
T 3apo_A           19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKN--PN--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   93 (780)
T ss_dssp             ----CHHHHTCCTTCCHHHHHHHHCC---------------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence            457999999999999999999999999999999999  32  2468899999999999999999999999998765543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.85  E-value=1.7e-09  Score=110.12  Aligned_cols=68  Identities=40%  Similarity=0.669  Sum_probs=56.1

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS   74 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs   74 (564)
                      .++|.+||+.+.++..+|+++|+++++++|||+...+ .....+...|+.|.+||+||+||.+|..||.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~-~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE-EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH-HHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4899999999999999999999999999999998321 1135689999999999999999999999996

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.40  E-value=1.3e-07  Score=76.34  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=45.1

Q ss_pred             cCcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcC
Q 008456            6 RCLYEVLGLRKE---CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS   64 (564)
Q Consensus         6 ~d~YevLGv~~~---As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLs   64 (564)
                      ..-|.||||++.   ++.++|+++||+|...+|||+..        ..-.+..|+.|+++|.
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG--------S~yl~~ki~~Ake~l~   57 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG--------SFYLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC--------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHHH
Confidence            456899999999   99999999999999999999972        2567888999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=98.06  E-value=1.4e-06  Score=78.62  Aligned_cols=36  Identities=25%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             cCccccccccccccCHHHHHHhHhhHHHHHHHHHHH
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR  331 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~  331 (564)
                      .-.|||+.|+|.|.+..+|.+|++||+|+++|..|+
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~   83 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS   83 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhc
Confidence            357999999999999999999999999999999775

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.34  E-value=8.4e-05  Score=66.94  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=33.7

Q ss_pred             ccCccccccccccccCHHHHHHhHhhHHHHHHHHHHH
Q 008456          295 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR  331 (564)
Q Consensus       295 ~~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~  331 (564)
                      ....|||.+|++.|.|..++..|.++|+|+.+|.+++
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            3467899999999999999999999999999998764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.53  E-value=0.0015  Score=58.62  Aligned_cols=37  Identities=35%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             cCccccccccccccCHHHHHHhHhhHHHHHHHHHHHH
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE  332 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~  332 (564)
                      ...++|.+|+..|.|..++..|.++++|+.+|..+..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            3568999999999999999999999999999986654

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=96.29  E-value=0.0038  Score=51.86  Aligned_cols=41  Identities=32%  Similarity=0.606  Sum_probs=34.3

Q ss_pred             ccccccccccc--cCHHHHHHhHhhHHHHHHHHHHHHHhhhhh
Q 008456          298 EFYCVLCGKKF--KSEKQWTNHEQSKKHKEKVADLRESFVDED  338 (564)
Q Consensus       298 ~~~C~~C~K~F--~s~~~~~nH~~SkkHk~~~~~l~~~~~~e~  338 (564)
                      -|||..|+..|  -|....+.|+++++|+.+|+..-+.+..+.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~~~~~~   45 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQ   45 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence            47999999999  346668999999999999999877776543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.98  E-value=0.013  Score=62.57  Aligned_cols=39  Identities=23%  Similarity=0.392  Sum_probs=34.7

Q ss_pred             ccccccccc------cccCHHHHHHhHhhHHHHHHHHHHHHHhhh
Q 008456          298 EFYCVLCGK------KFKSEKQWTNHEQSKKHKEKVADLRESFVD  336 (564)
Q Consensus       298 ~~~C~~C~K------~F~s~~~~~nH~~SkkHk~~~~~l~~~~~~  336 (564)
                      .++|.+|++      ++..+.+|..|.+|++|+.+|+..++.-.-
T Consensus       360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~~~~  404 (409)
T 3eph_A          360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADF  404 (409)
T ss_dssp             EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            468999999      899999999999999999999988766543

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=94.87  E-value=0.011  Score=62.85  Aligned_cols=34  Identities=26%  Similarity=0.566  Sum_probs=30.7

Q ss_pred             CccccccccccccCHHHHHHhHhhHHHHHHHHHH
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL  330 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l  330 (564)
                      ..+||.+|+|.|++++.+.+|+.+|||++++...
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            4679999999999999999999999999987553

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=93.37  E-value=0.044  Score=33.61  Aligned_cols=22  Identities=23%  Similarity=0.676  Sum_probs=20.2

Q ss_pred             cccccccccccCHHHHHHhHhh
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      |.|..|+|.|.+...|..|.++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            6799999999999999999865

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=92.85  E-value=0.06  Score=33.36  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=20.9

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.82  E-value=0.05  Score=33.63  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            57899999999999999999864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.81  E-value=0.047  Score=33.86  Aligned_cols=23  Identities=30%  Similarity=0.749  Sum_probs=20.8

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|+|.|.+...|..|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHh
Confidence            47899999999999999999864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.10  E-value=0.061  Score=33.47  Aligned_cols=23  Identities=22%  Similarity=0.405  Sum_probs=20.8

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|+|.|.....|..|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            47899999999999999999864

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=91.78  E-value=0.089  Score=34.59  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|+|.|.+...|..|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHHH
Confidence            46899999999999999999864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=91.73  E-value=0.067  Score=33.23  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            36899999999999999999875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.71  E-value=0.083  Score=32.59  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=20.7

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            46899999999999999999865

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.63  E-value=0.083  Score=32.77  Aligned_cols=23  Identities=22%  Similarity=0.615  Sum_probs=20.7

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|.++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHHH
Confidence            57899999999999999999864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=91.62  E-value=0.11  Score=34.49  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|.+.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCccCCCCCcccCcHHHHHHHHHH
Confidence            468999999999999999999864

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.60  E-value=0.1  Score=34.35  Aligned_cols=24  Identities=38%  Similarity=0.724  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|.+.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHHH
Confidence            468899999999999999999864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.85  E-value=0.034  Score=34.09  Aligned_cols=23  Identities=35%  Similarity=0.749  Sum_probs=20.6

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            36899999999999999999864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=91.48  E-value=0.095  Score=34.15  Aligned_cols=24  Identities=38%  Similarity=0.648  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|.++
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHHH
Confidence            468999999999999999999764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.47  E-value=0.088  Score=34.83  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.26  E-value=0.093  Score=34.51  Aligned_cols=24  Identities=13%  Similarity=0.266  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=91.18  E-value=0.1  Score=32.37  Aligned_cols=23  Identities=13%  Similarity=0.405  Sum_probs=20.6

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            36899999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.16  E-value=0.093  Score=32.25  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            46899999999999999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.08  E-value=0.092  Score=34.73  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            468899999999999999999875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=90.79  E-value=0.11  Score=33.95  Aligned_cols=24  Identities=21%  Similarity=0.528  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|++.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHH
Confidence            468899999999999999999864

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.77  E-value=0.11  Score=34.46  Aligned_cols=24  Identities=21%  Similarity=0.630  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|.++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHH
Confidence            458899999999999999999864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.63  E-value=0.11  Score=34.24  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHHH
Confidence            568899999999999999999864

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=89.49  E-value=0.058  Score=33.73  Aligned_cols=23  Identities=30%  Similarity=0.687  Sum_probs=20.5

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            36899999999999999999864

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=89.38  E-value=0.06  Score=33.64  Aligned_cols=23  Identities=17%  Similarity=0.574  Sum_probs=20.8

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            47899999999999999999864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=89.84  E-value=0.14  Score=34.62  Aligned_cols=24  Identities=21%  Similarity=0.632  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNV   28 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CceECCCCCcccCCHHHHHHHHHH
Confidence            457899999999999999999864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.73  E-value=0.13  Score=34.23  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             CccccccccccccCH-HHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSE-KQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~-~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+. ..|..|+++
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHHh
Confidence            468999999999999 999999864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.63  E-value=0.2  Score=34.12  Aligned_cols=24  Identities=17%  Similarity=0.583  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|.++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKM   32 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            468899999999999999999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.47  E-value=0.18  Score=35.33  Aligned_cols=24  Identities=29%  Similarity=0.642  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCEECCccCcccCCHHHHHHHHHH
Confidence            468999999999999999999875

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.46  E-value=0.16  Score=35.35  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             cCeECCCCCcccCchHHHHHHHhH
Confidence            468999999999999999999875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=89.37  E-value=0.15  Score=31.82  Aligned_cols=21  Identities=24%  Similarity=0.643  Sum_probs=19.0

Q ss_pred             ccccccccccccCHHHHHHhH
Q 008456          298 EFYCVLCGKKFKSEKQWTNHE  318 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~  318 (564)
                      .|.|..|++.|.+...|..|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            468999999999999999993

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.33  E-value=0.18  Score=34.54  Aligned_cols=24  Identities=21%  Similarity=0.643  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRI   33 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHHh
Confidence            468899999999999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.09  E-value=0.23  Score=34.82  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRI   34 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.02  E-value=0.22  Score=34.83  Aligned_cols=24  Identities=25%  Similarity=0.576  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             cCeECCCCCcccCCHHHHHHHHHh
Confidence            468999999999999999999864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=89.02  E-value=0.19  Score=30.98  Aligned_cols=23  Identities=22%  Similarity=0.716  Sum_probs=20.6

Q ss_pred             ccccc--cccccccCHHHHHHhHhh
Q 008456          298 EFYCV--LCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~--~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|.  .|+|.|.+...|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            36799  999999999999999875

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.95  E-value=0.23  Score=34.60  Aligned_cols=24  Identities=29%  Similarity=0.599  Sum_probs=21.9

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999875

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.92  E-value=0.21  Score=34.66  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQAL   34 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=88.77  E-value=0.19  Score=35.26  Aligned_cols=24  Identities=33%  Similarity=0.697  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQRI   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.74  E-value=0.19  Score=35.19  Aligned_cols=24  Identities=25%  Similarity=0.606  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHhH
Confidence            468999999999999999999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.73  E-value=0.24  Score=34.63  Aligned_cols=24  Identities=25%  Similarity=0.661  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRV   34 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999865

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.72  E-value=0.22  Score=34.23  Aligned_cols=24  Identities=29%  Similarity=0.657  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRT   34 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTT
T ss_pred             cCeECCCCCCccCCHHHHHHHhhh
Confidence            468999999999999999999864

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.69  E-value=0.25  Score=34.37  Aligned_cols=24  Identities=25%  Similarity=0.593  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKC   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHHh
Confidence            468999999999999999999764

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=88.68  E-value=0.22  Score=34.02  Aligned_cols=24  Identities=29%  Similarity=0.746  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCccCCCcChhhCCHHHHHHHHHh
Confidence            468899999999999999999864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.66  E-value=0.22  Score=34.32  Aligned_cols=24  Identities=21%  Similarity=0.560  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQRT   34 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHHH
Confidence            468999999999999999999864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.66  E-value=0.19  Score=35.03  Aligned_cols=24  Identities=29%  Similarity=0.678  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHHh
Confidence            468999999999999999999864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.56  E-value=0.2  Score=35.04  Aligned_cols=24  Identities=21%  Similarity=0.679  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQKT   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999865

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=88.49  E-value=0.23  Score=35.34  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=21.6

Q ss_pred             cCccccccccccccCHHHHHHhHh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQ  319 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~  319 (564)
                      ...+||..|+-+|.+...|.+|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            456899999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=88.47  E-value=0.22  Score=33.87  Aligned_cols=24  Identities=29%  Similarity=0.695  Sum_probs=21.4

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~   33 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRS   33 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhhh
Confidence            468999999999999999999764

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.44  E-value=0.24  Score=34.82  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRRI   34 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHHH
Confidence            468999999999999999999864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.42  E-value=0.24  Score=34.71  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH
Confidence            468899999999999999999764

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.42  E-value=0.23  Score=34.89  Aligned_cols=24  Identities=25%  Similarity=0.710  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHHh
Confidence            468899999999999999999865

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.34  E-value=0.24  Score=34.59  Aligned_cols=24  Identities=25%  Similarity=0.584  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTT
T ss_pred             cCeECCCCCcccCChhHHHHHhHh
Confidence            468999999999999999999864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.34  E-value=0.21  Score=34.96  Aligned_cols=24  Identities=25%  Similarity=0.605  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQRV   34 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH
Confidence            468999999999999999999874

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=88.31  E-value=0.26  Score=31.28  Aligned_cols=23  Identities=30%  Similarity=0.882  Sum_probs=20.4

Q ss_pred             ccccc--cccccccCHHHHHHhHhh
Q 008456          298 EFYCV--LCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~--~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|.  .|+|.|.+...|..|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            46797  999999999999999865

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.28  E-value=0.21  Score=34.98  Aligned_cols=24  Identities=33%  Similarity=0.639  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHHH
Confidence            468999999999999999999865

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.25  E-value=0.21  Score=34.79  Aligned_cols=24  Identities=25%  Similarity=0.635  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGG
T ss_pred             cCEECCCCChhhCChHHHHHHHHh
Confidence            468999999999999999999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.23  E-value=0.23  Score=33.85  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|.++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRV   33 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.19  E-value=0.24  Score=33.71  Aligned_cols=24  Identities=33%  Similarity=0.656  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHERI   32 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHHH
Confidence            468899999999999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.17  E-value=0.23  Score=34.26  Aligned_cols=24  Identities=29%  Similarity=0.740  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999865

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.16  E-value=0.25  Score=34.63  Aligned_cols=24  Identities=25%  Similarity=0.692  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQRV   34 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.16  E-value=0.2  Score=34.91  Aligned_cols=24  Identities=29%  Similarity=0.659  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.09  E-value=0.2  Score=33.54  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.5

Q ss_pred             CccccccccccccCHHHHHHh-Hh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNH-EQ  319 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH-~~  319 (564)
                      ..|.|..|+|.|.+...|..| .+
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~~   31 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVIQ   31 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            458899999999999999999 54

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.05  E-value=0.27  Score=34.21  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999875

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.04  E-value=0.26  Score=34.15  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQ   32 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHHh
Confidence            468899999999999999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.03  E-value=0.25  Score=34.62  Aligned_cols=24  Identities=33%  Similarity=0.758  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|.++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRRS   34 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHh
Confidence            468999999999999999999864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.01  E-value=0.24  Score=34.48  Aligned_cols=24  Identities=25%  Similarity=0.661  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQAT   34 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHHH
Confidence            468899999999999999999864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.97  E-value=0.25  Score=34.18  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQT   32 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999865

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.97  E-value=0.21  Score=34.99  Aligned_cols=24  Identities=25%  Similarity=0.595  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCcCCcccCCHHHHHHHHHH
Confidence            468899999999999999999875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.95  E-value=0.26  Score=34.11  Aligned_cols=24  Identities=21%  Similarity=0.585  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKT   34 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.95  E-value=0.23  Score=34.75  Aligned_cols=24  Identities=25%  Similarity=0.600  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=87.94  E-value=0.31  Score=34.09  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQRV   34 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.85  E-value=0.3  Score=34.23  Aligned_cols=24  Identities=29%  Similarity=0.704  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQRL   34 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHH
Confidence            468899999999999999999865

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.83  E-value=0.25  Score=34.45  Aligned_cols=24  Identities=29%  Similarity=0.631  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAI   34 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTT
T ss_pred             CCeECCCCChhhCCHHHHHHHHHH
Confidence            468899999999999999999864

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.80  E-value=0.31  Score=33.99  Aligned_cols=24  Identities=25%  Similarity=0.584  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhhh
Confidence            568999999999999999999865

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=87.78  E-value=0.26  Score=31.38  Aligned_cols=23  Identities=26%  Similarity=0.561  Sum_probs=20.8

Q ss_pred             ccccc--cccccccCHHHHHHhHhh
Q 008456          298 EFYCV--LCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~--~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|.  .|+|.|.+...|..|+++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHH
Confidence            47899  899999999999999875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.77  E-value=0.31  Score=34.09  Aligned_cols=24  Identities=29%  Similarity=0.740  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRV   34 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHh
Confidence            468999999999999999999865

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.69  E-value=0.3  Score=34.04  Aligned_cols=24  Identities=29%  Similarity=0.670  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|.++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHH
Confidence            468999999999999999999764

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.67  E-value=0.29  Score=34.16  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRI   34 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTT
T ss_pred             CCeECCCCCceeCCHHHHHHHHHH
Confidence            468999999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.64  E-value=0.28  Score=34.23  Aligned_cols=24  Identities=29%  Similarity=0.677  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQVI   34 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHTT
T ss_pred             CCeECCcCChhhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.61  E-value=0.33  Score=33.77  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHERL   34 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHHH
T ss_pred             CCeECCCCCCccCchHHHHHHHHh
Confidence            468999999999999999999864

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.60  E-value=0.25  Score=34.59  Aligned_cols=24  Identities=21%  Similarity=0.560  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCcCCCccCCHHHHHHHHHH
Confidence            468999999999999999999865

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=87.58  E-value=0.27  Score=34.25  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQRS   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGGG
T ss_pred             CceECCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999875

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.57  E-value=0.25  Score=33.72  Aligned_cols=24  Identities=21%  Similarity=0.490  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVLI   33 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTHH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.56  E-value=0.3  Score=34.20  Aligned_cols=25  Identities=28%  Similarity=0.579  Sum_probs=22.3

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWIT   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTH
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH
Confidence            3568999999999999999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.56  E-value=0.24  Score=34.55  Aligned_cols=24  Identities=29%  Similarity=0.746  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQRI   34 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHTT
T ss_pred             cCccCCCCCCccCChHHHHHHHHH
Confidence            468899999999999999999864

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.54  E-value=0.28  Score=34.36  Aligned_cols=24  Identities=29%  Similarity=0.675  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            468899999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=87.52  E-value=0.23  Score=35.73  Aligned_cols=23  Identities=26%  Similarity=0.702  Sum_probs=21.1

Q ss_pred             CccccccccccccCHHHHHHhHh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQ  319 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~  319 (564)
                      ..|.|..|+|.|.....|..|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            46889999999999999999986

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.52  E-value=0.27  Score=34.30  Aligned_cols=24  Identities=29%  Similarity=0.686  Sum_probs=21.9

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQRT   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHHH
Confidence            468999999999999999999875

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.46  E-value=0.34  Score=33.88  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQRV   34 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHHh
Confidence            468999999999999999999875

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=87.45  E-value=0.32  Score=33.93  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            468899999999999999999875

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.40  E-value=0.29  Score=34.19  Aligned_cols=24  Identities=25%  Similarity=0.697  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHHH
Confidence            468899999999999999999875

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.37  E-value=0.26  Score=34.40  Aligned_cols=24  Identities=25%  Similarity=0.645  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQKI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.34  E-value=0.28  Score=34.18  Aligned_cols=24  Identities=25%  Similarity=0.603  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQRT   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CCcCCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=87.34  E-value=0.28  Score=34.25  Aligned_cols=24  Identities=29%  Similarity=0.682  Sum_probs=21.9

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTG
T ss_pred             cCcCCCCCcchhCCHHHHHHHHHh
Confidence            568999999999999999999875

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.32  E-value=0.21  Score=35.04  Aligned_cols=24  Identities=38%  Similarity=0.610  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHH
Confidence            468899999999999999999864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.31  E-value=0.3  Score=33.99  Aligned_cols=24  Identities=25%  Similarity=0.645  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQRI   34 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHTT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHh
Confidence            468899999999999999999865

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.26  E-value=0.33  Score=33.91  Aligned_cols=24  Identities=29%  Similarity=0.573  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLRL   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.22  E-value=0.25  Score=34.52  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLRS   34 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.20  E-value=0.31  Score=33.90  Aligned_cols=24  Identities=29%  Similarity=0.685  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQRI   34 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHGG
T ss_pred             CCeECCCcChhhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.19  E-value=0.23  Score=34.35  Aligned_cols=24  Identities=25%  Similarity=0.635  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHERT   34 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhHh
Confidence            468999999999999999999864

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.15  E-value=0.34  Score=33.86  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCcCCCccChhhCChHHHHHHHHH
Confidence            468999999999999999999875

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.08  E-value=0.3  Score=34.10  Aligned_cols=24  Identities=25%  Similarity=0.744  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQKI   34 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHh
Confidence            468999999999999999999864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.02  E-value=0.3  Score=34.06  Aligned_cols=24  Identities=25%  Similarity=0.654  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQKI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.99  E-value=0.31  Score=34.04  Aligned_cols=24  Identities=33%  Similarity=0.628  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHHH
Confidence            468999999999999999999864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=86.98  E-value=0.26  Score=36.00  Aligned_cols=25  Identities=12%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|++.|.+...|..|+++
T Consensus        22 ~k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A           22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHH
Confidence            3568999999999999999999864

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.97  E-value=0.3  Score=34.09  Aligned_cols=24  Identities=33%  Similarity=0.740  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHH
Confidence            568999999999999999999864

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.92  E-value=0.31  Score=33.91  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.92  E-value=0.29  Score=34.15  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQRI   34 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCChHHHHHHHhh
Confidence            468999999999999999999875

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.89  E-value=0.27  Score=34.27  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQRT   34 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCeeCCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=86.85  E-value=0.3  Score=34.18  Aligned_cols=24  Identities=33%  Similarity=0.659  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred             CCcccCccCcccCCHHHHHHHHHH
Confidence            468999999999999999999865

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.81  E-value=0.32  Score=33.91  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHMV   34 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGGG
T ss_pred             cCccCCCccchhCCHHHHHHHHHH
Confidence            468999999999999999999875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.81  E-value=0.21  Score=34.59  Aligned_cols=24  Identities=29%  Similarity=0.598  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCeECcccCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=86.79  E-value=0.32  Score=34.04  Aligned_cols=22  Identities=32%  Similarity=0.764  Sum_probs=20.6

Q ss_pred             CccccccccccccCHHHHHHhH
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHE  318 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~  318 (564)
                      ..|.|..|+|.|.+...|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            5789999999999999999997

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.72  E-value=0.32  Score=34.00  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|.++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHHH
Confidence            468999999999999999999865

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.68  E-value=0.31  Score=34.04  Aligned_cols=24  Identities=25%  Similarity=0.646  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQRT   34 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHHH
Confidence            468899999999999999999865

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.66  E-value=0.3  Score=34.09  Aligned_cols=24  Identities=25%  Similarity=0.627  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            568999999999999999999865

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.64  E-value=0.34  Score=33.82  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=86.64  E-value=0.33  Score=33.79  Aligned_cols=24  Identities=25%  Similarity=0.595  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQRV   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGG
T ss_pred             cCeECCccccccCChHHHHHHHHH
Confidence            468999999999999999999865

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.49  E-value=0.35  Score=33.66  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCeECCCCChhhCCHHHHHHHHHh
Confidence            468999999999999999999864

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=86.42  E-value=0.35  Score=33.82  Aligned_cols=24  Identities=21%  Similarity=0.529  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQRM   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999875

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.40  E-value=0.34  Score=33.86  Aligned_cols=24  Identities=29%  Similarity=0.648  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHHH
Confidence            468999999999999999999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.38  E-value=0.35  Score=33.71  Aligned_cols=23  Identities=26%  Similarity=0.627  Sum_probs=21.3

Q ss_pred             CccccccccccccCHHHHHHhHh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQ  319 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~  319 (564)
                      ..|.|..|+|.|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            46899999999999999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.38  E-value=0.32  Score=33.91  Aligned_cols=24  Identities=25%  Similarity=0.566  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeeCcccCcccCChHHHHHHHHH
Confidence            568999999999999999999865

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.37  E-value=0.35  Score=33.84  Aligned_cols=24  Identities=29%  Similarity=0.639  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.26  E-value=0.35  Score=33.70  Aligned_cols=24  Identities=38%  Similarity=0.708  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQRS   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHHH
Confidence            468999999999999999999864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=86.08  E-value=0.39  Score=33.40  Aligned_cols=24  Identities=29%  Similarity=0.737  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.....|..|+++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~   32 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVRS   32 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999865

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=86.06  E-value=0.31  Score=34.56  Aligned_cols=25  Identities=32%  Similarity=0.684  Sum_probs=22.3

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLS   34 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHh
Confidence            3568999999999999999999875

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=85.93  E-value=0.39  Score=34.81  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=15.6

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|+++
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~   26 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRT   26 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHHHH
Confidence            45677777777777777777653

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.90  E-value=0.38  Score=33.54  Aligned_cols=24  Identities=25%  Similarity=0.654  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHHH
Confidence            468999999999999999999764

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.90  E-value=0.35  Score=33.63  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQRV   34 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCcCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.83  E-value=0.34  Score=33.78  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQKV   34 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHh
Confidence            468999999999999999999875

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.65  E-value=0.37  Score=33.59  Aligned_cols=24  Identities=33%  Similarity=0.756  Sum_probs=21.7

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQRV   34 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHH
Confidence            468899999999999999999865

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.61  E-value=0.39  Score=33.45  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQVL   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHHH
Confidence            468999999999999999999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=85.58  E-value=0.34  Score=37.43  Aligned_cols=24  Identities=25%  Similarity=0.855  Sum_probs=19.4

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      -.|.|..|+|.|.+...|..|+++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~   26 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRA   26 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHH
Confidence            357888888888888888888764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=85.30  E-value=0.33  Score=35.22  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=22.1

Q ss_pred             CccccccccccccCHHHHHHhHhhH
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQSK  321 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~Sk  321 (564)
                      ..|.|..|++.|.+...|..|+++.
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHh
Confidence            4688999999999999999998764

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.24  E-value=0.33  Score=33.84  Aligned_cols=24  Identities=25%  Similarity=0.630  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRRV   34 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTHH
T ss_pred             CCeECCcCCchhCCHHHHHHHHHh
Confidence            568999999999999999999864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=84.99  E-value=0.45  Score=34.94  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=18.7

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCcCCCCccccCCHHHHHHHHHH
Confidence            36788888888888888888765

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=84.99  E-value=0.47  Score=34.36  Aligned_cols=22  Identities=23%  Similarity=0.585  Sum_probs=20.3

Q ss_pred             cccccccccccCHHHHHHhHhh
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~   23 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT   23 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh
Confidence            6899999999999999999864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=84.93  E-value=0.44  Score=31.82  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=21.1

Q ss_pred             Ccccccc--ccccccCHHHHHHhHhh
Q 008456          297 SEFYCVL--CGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~--C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|.+  |+|.|.+...|..|+++
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            4678985  99999999999999864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.80  E-value=0.31  Score=34.00  Aligned_cols=24  Identities=29%  Similarity=0.667  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQRV   34 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.68  E-value=0.5  Score=37.50  Aligned_cols=25  Identities=32%  Similarity=0.628  Sum_probs=22.3

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|+|.|.....|..|+++
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~   35 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQ   35 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhh
Confidence            3568999999999999999999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=84.07  E-value=0.48  Score=36.60  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|+|.|.....|..|+++
T Consensus        30 ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C           30 YRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CcCeECCCCCCCcCCHHHHHHHhCc
Confidence            4578999999999999999999875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=84.07  E-value=0.49  Score=35.48  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|++.|.+...|..|.++
T Consensus        38 ~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           38 VKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH
Confidence            3567899999999999999999865

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.07  E-value=0.49  Score=33.26  Aligned_cols=24  Identities=13%  Similarity=0.200  Sum_probs=21.2

Q ss_pred             Ccccccc--ccccccCHHHHHHhHhh
Q 008456          297 SEFYCVL--CGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~--C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..  |+|.|.+...|..|+++
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            5688986  99999999999999864

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=84.06  E-value=0.077  Score=34.59  Aligned_cols=23  Identities=26%  Similarity=0.622  Sum_probs=20.4

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|+|.|.+...|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH
Confidence            46899999999999999999864

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=83.93  E-value=0.38  Score=37.25  Aligned_cols=34  Identities=32%  Similarity=0.544  Sum_probs=30.6

Q ss_pred             CccccccccccccCHHHHHHhHhhHHHHHHHHHH
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL  330 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l  330 (564)
                      ....|..|+..|...-+++-|+=|+.|...|+.+
T Consensus        12 P~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           12 TKPECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             CCSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             CCccccccCcccccccchhhhhccHHHHHHHHHH
Confidence            3358999999999999999999999999998854

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=83.49  E-value=0.5  Score=34.23  Aligned_cols=25  Identities=12%  Similarity=0.324  Sum_probs=22.1

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|++.|.+...|..|+++
T Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C           30 EKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCcchhCCHHHHHHHHHH
Confidence            3468999999999999999999875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=83.01  E-value=0.66  Score=35.74  Aligned_cols=25  Identities=16%  Similarity=0.461  Sum_probs=20.0

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|++.|.+...|..|+++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~   39 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTV   39 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHH
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH
Confidence            4567888888888888888888754

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.50  E-value=0.62  Score=35.51  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=16.1

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~   31 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERI   31 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            346677777777777777777654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.25  E-value=0.55  Score=36.07  Aligned_cols=24  Identities=29%  Similarity=0.711  Sum_probs=20.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        41 ~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A           41 KPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHh
Confidence            468899999999999999999764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=82.15  E-value=0.57  Score=35.11  Aligned_cols=24  Identities=13%  Similarity=0.519  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|.++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~   32 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVT   32 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHHH
Confidence            568899999999999999999865

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=81.87  E-value=0.59  Score=36.03  Aligned_cols=25  Identities=20%  Similarity=0.634  Sum_probs=22.1

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|++.|.+...|..|+++
T Consensus        43 ~~~~~C~~C~k~f~~~~~L~~H~~~   67 (74)
T 2lce_A           43 EKPYRCNICGAQFNRPANLKTHTRI   67 (74)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCEECCCCCchhCCHHHHHHHHHh
Confidence            3468999999999999999999864

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=81.54  E-value=0.67  Score=30.71  Aligned_cols=24  Identities=29%  Similarity=0.771  Sum_probs=20.8

Q ss_pred             Cccccc--cccccccCHHHHHHhHhh
Q 008456          297 SEFYCV--LCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~--~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|.  .|+|.|.+...|..|+++
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~   30 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHH
Confidence            457899  499999999999999864

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.47  E-value=0.71  Score=35.45  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=22.3

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|++.|.+...|..|+++
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~~   36 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQRV   36 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHh
Confidence            3568999999999999999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=81.27  E-value=0.6  Score=35.72  Aligned_cols=24  Identities=25%  Similarity=0.641  Sum_probs=19.0

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|.++
T Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           48 KPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHh
Confidence            457788888888888888888764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.25  E-value=0.64  Score=35.43  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        36 ~~~~C~~C~~~f~~~~~L~~H~~~   59 (70)
T 1x5w_A           36 RPFKCNYCSFDTKQPSNLSKHMKK   59 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCEeCCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.06  E-value=0.72  Score=35.82  Aligned_cols=24  Identities=21%  Similarity=0.523  Sum_probs=20.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~   29 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRK   29 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHH
Confidence            467899999999999999999754

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.75  E-value=0.67  Score=36.00  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|++.|.+...|..|+++
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCCCCCccCCHHHHHHHHHH
Confidence            467899999999999999888764

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=80.70  E-value=0.81  Score=32.18  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.8

Q ss_pred             CccccccccccccCHHHHHHhHhhH
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQSK  321 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~Sk  321 (564)
                      +-|.|+.|-+.|.|..+|..|-.++
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye~~   28 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYEAV   28 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cccCCcHHHHHcCCHHHHHHHHHhc
Confidence            3489999999999999999998653

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=80.24  E-value=0.74  Score=38.04  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=19.9

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..+.|..|+|.|.+...|..|+++
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~   50 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRL   50 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhh
Confidence            456799999999999999998864

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.12  E-value=0.75  Score=37.87  Aligned_cols=24  Identities=29%  Similarity=0.560  Sum_probs=19.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        53 ~~~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A           53 DALKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             HHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCEECCCCCCccCCHHHHHHHHHH
Confidence            357899999999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	564
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	6e-14
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-12
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-11
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	2e-10
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-10
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	5e-10
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-09
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-08
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-06

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (159), Expect = 6e-14
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 3  SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLV--QSGLSQAEATAQFQELVHAY 60
          + K+  Y +LG        +++  Y+KL L  HPDK        +  E   +F E+  A+
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 61 EVLSDPKERAWYDSHRS 77
          ++L + + +  YD  RS
Sbjct: 73 KILGNEETKKKYDLQRS 89

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 4  EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
               ++ +G+    T ++++  Y+K  L  HPDK       +  A   F EL  A+   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDK-ATGQPYEQYAKMIFMELNDAWSEF 89

Query: 64 SDPKERAWY 72
           +  ++  Y
Sbjct: 90 ENQGQKPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 56.6 bits (136), Expect = 5e-11
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 9  YEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEAT-AQFQELVHAYEVLSD 65
          + + GL      D   +   ++ L  Q HPDK      ++  A   Q   +  A++ L  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 66 PKERAWYD 73
          P  RA Y 
Sbjct: 64 PLMRAEYL 71

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 12/62 (19%), Positives = 22/62 (35%)

Query: 284 EEGLEEEEIEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVMAD 343
           +   E +          C+ C + F        H +SK HK+++  L      ++E    
Sbjct: 1   DPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERA 60

Query: 344 FG 345
            G
Sbjct: 61  AG 62

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 54.6 bits (131), Expect = 3e-10
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
          K+  YE+LG+ K     EIR AYK+LA++ HPD+         EA A+F+E+  AYEVL+
Sbjct: 2  KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57

Query: 65 DPKERAWYDSH 75
          D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 53.9 bits (129), Expect = 5e-10
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 3  SEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
          ++K  L E+L L ++   D   ++ AYK+ +L  HPD        +  + A  QEL   +
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD--------KGGSHALMQELNSLW 59

Query: 61 EVLSDPKERAWYDSHRS 77
                      +   +
Sbjct: 60 GTFKTEVYNLRMNLGGT 76

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 1e-09
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 5  KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
           +  Y+ LGL +  + +EI+ AY++ AL+ HPDK       +  A  +F+E+  AY+VLS
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-----EPGAEEKFKEIAEAYDVLS 56

Query: 65 DPKERAWYDSHRSQIL 80
          DP++R  +D +  + L
Sbjct: 57 DPRKREIFDRYGEEGL 72

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 2  ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
           S  + +  V+    +    E +   ++L L+ HPDK  ++     E     Q       
Sbjct: 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQN---EIN 68

Query: 62 VLSDPKERAWYDSHRSQ 78
           L     +A+ D +  +
Sbjct: 69 RLEK---QAFLDQNADR 82

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 1  MASEKRCLYEVLGLRKECTTD--EIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVH 58
          M  E   L ++LGL +    +   +R AY K   + HPDK             + +++  
Sbjct: 3  MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNT 54

Query: 59 AYEVLSDPKERAWYDSH 75
           Y+ + D  + A     
Sbjct: 55 LYKKMEDGVKYAHQPDF 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	564
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.83
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.76
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.72
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.61
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.56
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.54
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	99.09
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.91
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	94.87
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	94.85
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	92.85
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.31
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	92.21
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	92.13
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	91.78
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	91.57
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	91.24
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	91.1
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	90.39
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	90.0
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	89.5
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	89.28
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	88.25
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	88.05
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	87.48
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	86.95
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	85.27
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	83.63
d1fu9a_	36	U-shaped transcription factor, different fingers {	82.86
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	81.89
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	81.82
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	81.5
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	80.95
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	80.31

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.1e-21  Score=158.04  Aligned_cols=69  Identities=48%  Similarity=0.768  Sum_probs=63.4

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ++|||+||||+++||.++||+|||+|+++||||++.  +  .+.+...|+.|+.||+||+||.+|+.||.+|.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~--~--~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   70 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQ--G--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCT--T--TCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTT
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccC--C--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Confidence            689999999999999999999999999999999993  2  23578899999999999999999999999865

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.9e-20  Score=152.75  Aligned_cols=72  Identities=38%  Similarity=0.665  Sum_probs=65.2

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhcc
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS   82 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~   82 (564)
                      +|||+||||+++||.++|++||++|++++|||++..     +.+.+.|+.|++||+||+||.+|+.||.+|..++.+
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-----~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-----PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-----hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            599999999999999999999999999999999932     247789999999999999999999999998876543

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.5e-19  Score=154.14  Aligned_cols=73  Identities=29%  Similarity=0.508  Sum_probs=64.3

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCC--chHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGL--SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~--~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ++|||+||||+++||.++||+||++|+++||||++.....  ....+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        15 ~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             ccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            5799999999999999999999999999999999843221  234688999999999999999999999998753

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.72  E-value=1.2e-19  Score=159.50  Aligned_cols=66  Identities=24%  Similarity=0.345  Sum_probs=58.9

Q ss_pred             CCcCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456            4 EKRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS   77 (564)
Q Consensus         4 ~k~d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~   77 (564)
                      ...+||+||||+++|  +..+||+|||+|||+|||||+  +.      .++|+.|+.||+||+||.+|+.||..+.
T Consensus         6 ~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~--~~------~e~F~~I~~AY~vLsd~~kR~~YD~~~~   73 (114)
T d1gh6a_           6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG--GD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTC--CT------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccch--hh------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            456899999999999  788999999999999999999  32      2479999999999999999999998643

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.4e-16  Score=130.09  Aligned_cols=69  Identities=26%  Similarity=0.367  Sum_probs=59.1

Q ss_pred             CcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCC-CchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            7 CLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSG-LSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         7 d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g-~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      |||+||||+++  ++.++|++|||++++.||||+....+ .....+...|+.|++||+||+||.+|+.|+-.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            79999999995  45899999999999999999984322 12345789999999999999999999999864

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=3.9e-16  Score=133.75  Aligned_cols=67  Identities=22%  Similarity=0.403  Sum_probs=60.2

Q ss_pred             CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhh
Q 008456            5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY   72 (564)
Q Consensus         5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~Y   72 (564)
                      ..++|.+|||...||.++||+|||++++.||||++..++ ....|...|+.|+.||+||+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~-~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP-YEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTST-THHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChH-HHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            457899999999999999999999999999999995433 3456899999999999999999999988

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.56  E-value=2.7e-16  Score=129.80  Aligned_cols=63  Identities=27%  Similarity=0.303  Sum_probs=57.1

Q ss_pred             CcCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456            5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH   75 (564)
Q Consensus         5 k~d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~   75 (564)
                      ..+||+||||++++  |..+||+|||+|+++||||++.        ..+.|+.|++||+||+|+.+|..||..
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g--------~~e~~~~in~Ay~~L~d~~~r~~~~~~   74 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC--------CHHHHHHHHHHHHHHCCHHHHHHHccC
Confidence            35799999999988  9999999999999999999982        135899999999999999999999984

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.3e-16  Score=130.06  Aligned_cols=65  Identities=22%  Similarity=0.310  Sum_probs=58.2

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456            6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR   76 (564)
Q Consensus         6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r   76 (564)
                      +++|+||||+.+||.++||+|||+|+++||||++  ++ +.+.|.+.|+.|+.||++|+   .+..||...
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~--~~-~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~   80 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKN--PE-NHDIANEVFKHLQNEINRLE---KQAFLDQNA   80 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTS--SS-CHHHHHHHHHHHHHHHHHHH---HHTTCSSSS
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccc--cc-hhhHHHHHHHHHHHHHHHHH---HHHHhhccc
Confidence            5899999999999999999999999999999999  54 56779999999999999996   467777654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=8.5e-12  Score=99.26  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=36.3

Q ss_pred             ccCccccccccccccCHHHHHHhHhhHHHHHHHHHHHHHh
Q 008456          295 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF  334 (564)
Q Consensus       295 ~~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~  334 (564)
                      ....|||++|+|.|+|+++|+||++||+|+++|+.|+..+
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~~p   51 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEP   51 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSCS
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhccCc
Confidence            3467999999999999999999999999999999997654

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0023  Score=41.03  Aligned_cols=26  Identities=35%  Similarity=0.703  Sum_probs=24.4

Q ss_pred             cccccccccccCHHHHHHhHhhHHHH
Q 008456          299 FYCVLCGKKFKSEKQWTNHEQSKKHK  324 (564)
Q Consensus       299 ~~C~~C~K~F~s~~~~~nH~~SkkHk  324 (564)
                      |.|..|+=.|++...|..|++||-|.
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~   27 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHS   27 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhc
Confidence            67999999999999999999999884

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.87  E-value=0.0074  Score=44.98  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             ccccccccccccCHHHHHHhHhhHHHHHHHHHH
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL  330 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l  330 (564)
                      .-||.+|+.+|.|..+-+.|-.=|+|.+++.+-
T Consensus        21 nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          21 SKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            348999999999999999999999999998753

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.85  E-value=0.0093  Score=46.25  Aligned_cols=35  Identities=37%  Similarity=0.481  Sum_probs=31.7

Q ss_pred             CccccccccccccCHHHHHHhHhhHHHHHHHHHHH
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR  331 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~  331 (564)
                      .+.||.+|+-+..|+.|-..|-.||||..+|..+-
T Consensus        31 td~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35599999999999999999999999999998653

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=92.85  E-value=0.027  Score=36.61  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=21.1

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|+|.|.....|..|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCCCCCCCCCCCCchHcccccCc
Confidence            47899999999999999999975

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.31  E-value=0.03  Score=36.17  Aligned_cols=23  Identities=26%  Similarity=0.667  Sum_probs=21.3

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|+|.|.....|..|+++
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCCC
Confidence            57899999999999999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.21  E-value=0.033  Score=37.74  Aligned_cols=25  Identities=20%  Similarity=0.543  Sum_probs=22.5

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .-.|.|.+|+|.|.....|..|++.
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CccccCCCCCCcccChHHHHHHccc
Confidence            3578999999999999999999874

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.032  Score=36.27  Aligned_cols=23  Identities=26%  Similarity=0.637  Sum_probs=21.3

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|+|.|.....|..|+++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CEECCcCCCeecchHHhhhhcCc
Confidence            47899999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.04  Score=36.84  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=22.4

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|+|.|.....|..|++.
T Consensus         5 ekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           5 EKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCeeCCCCCCEeCchHHhHhhccc
Confidence            3578999999999999999999874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.041  Score=34.98  Aligned_cols=23  Identities=30%  Similarity=0.741  Sum_probs=21.0

Q ss_pred             ccccccccccccCHHHHHHhHhh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..|+|.|.....|..|.+.
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccC
Confidence            47899999999999999999875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.049  Score=37.27  Aligned_cols=25  Identities=28%  Similarity=0.723  Sum_probs=22.5

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .-.|.|..|+|.|.....|..|.++
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCEecCCCCceeeCHHHHHHhCcc
Confidence            3578999999999999999999875

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.048  Score=41.45  Aligned_cols=37  Identities=30%  Similarity=0.616  Sum_probs=29.9

Q ss_pred             cccccccccccc-C-HHHHHHhHhhHHHHHHHHHHHHHh
Q 008456          298 EFYCVLCGKKFK-S-EKQWTNHEQSKKHKEKVADLRESF  334 (564)
Q Consensus       298 ~~~C~~C~K~F~-s-~~~~~nH~~SkkHk~~~~~l~~~~  334 (564)
                      -|||..|+..|. + ...-+.|+..++|++++..-=+.+
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~~~   41 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKW   41 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTSSS
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHHHH
Confidence            479999999996 3 344589999999999998765444

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.058  Score=36.57  Aligned_cols=26  Identities=19%  Similarity=0.468  Sum_probs=22.9

Q ss_pred             cCccccccccccccCHHHHHHhHhhH
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQSK  321 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~Sk  321 (564)
                      .-.|.|..|+|.|.....|..|+++.
T Consensus         6 ekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           6 EKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCEeCCCCcccccchHHHHHHcccc
Confidence            35789999999999999999998753

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.07  Score=36.09  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=22.3

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .-.|.|..|+|.|.....|..|+++
T Consensus         6 ekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCCCcCCHhHHHHhCcc
Confidence            3578999999999999999999864

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.50  E-value=0.099  Score=35.49  Aligned_cols=25  Identities=20%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .-.|.|..|+|.|.....|..|+++
T Consensus         9 eKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           9 IKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             ccCeEeCCCCCEecCHHHHHHHHhc
Confidence            3578999999999999999999864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.28  E-value=0.1  Score=32.33  Aligned_cols=21  Identities=29%  Similarity=0.689  Sum_probs=19.9

Q ss_pred             ccccccccccCHHHHHHhHhh
Q 008456          300 YCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       300 ~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      .|.+|+|-|.-...|+.|.+|
T Consensus         3 kc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGG
T ss_pred             ccchhhhHhcchhHHHHHhhc
Confidence            699999999999999999987

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.11  Score=33.88  Aligned_cols=23  Identities=30%  Similarity=0.736  Sum_probs=20.7

Q ss_pred             cccccc--ccccccCHHHHHHhHhh
Q 008456          298 EFYCVL--CGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~--C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..  |+|.|.....|..|+++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCccccc
Confidence            478988  99999999999999874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.05  E-value=0.11  Score=35.94  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      -.|.|..|+|.|.....|..|+++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~   27 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQ   27 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCcC
Confidence            468899999999999999999864

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.48  E-value=0.11  Score=35.48  Aligned_cols=24  Identities=21%  Similarity=0.632  Sum_probs=21.6

Q ss_pred             CccccccccccccCHHHHHHhHhh
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      -.|.|..|+|.|.|-.||-=|+++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~   27 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNV   27 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CccCCCCCCCccCCcccccchHhh
Confidence            357899999999999999999866

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.95  E-value=0.17  Score=33.01  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             cccccc--ccccccCHHHHHHhHhh
Q 008456          298 EFYCVL--CGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~--C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..  |+|.|.....|..|+++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcCc
Confidence            478988  99999999999999864

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=0.21  Score=35.77  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=21.5

Q ss_pred             cCccccccccccccCHHHHHHhHh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQ  319 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~  319 (564)
                      .-.|-|-.|+|.|....++.||+.
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             cceeeccccccccCCHHHHhHhHH
Confidence            356789999999999999999985

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.63  E-value=0.26  Score=32.50  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.9

Q ss_pred             cccccc--ccccccCHHHHHHhHhh
Q 008456          298 EFYCVL--CGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~--C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..  |+|.|.....|..|+++
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhh
Confidence            578988  99999999999999875

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.86  E-value=0.26  Score=33.09  Aligned_cols=22  Identities=32%  Similarity=0.668  Sum_probs=19.7

Q ss_pred             ccccccccccccCHHHHHHhHh
Q 008456          298 EFYCVLCGKKFKSEKQWTNHEQ  319 (564)
Q Consensus       298 ~~~C~~C~K~F~s~~~~~nH~~  319 (564)
                      .-||..|+-.|.+.+.|..|.+
T Consensus         8 ~rYC~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_           8 KKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHH
T ss_pred             hhHHhhCCceehhHHHHHHHHH
Confidence            3599999999999999999964

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.89  E-value=0.39  Score=30.96  Aligned_cols=25  Identities=28%  Similarity=0.716  Sum_probs=22.4

Q ss_pred             CccccccccccccCHHHHHHhHhhH
Q 008456          297 SEFYCVLCGKKFKSEKQWTNHEQSK  321 (564)
Q Consensus       297 ~~~~C~~C~K~F~s~~~~~nH~~Sk  321 (564)
                      ..|.|++|...|+-...|.-|.+|-
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCcccchHHHHhhccccceEeeecc
Confidence            3688999999999999999999873

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.82  E-value=0.3  Score=31.52  Aligned_cols=23  Identities=22%  Similarity=0.632  Sum_probs=20.2

Q ss_pred             cccccc--ccccccCHHHHHHhHhh
Q 008456          298 EFYCVL--CGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~--C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..  |+|.|.....|..|.++
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCc
Confidence            478988  99999999999999763

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.50  E-value=0.26  Score=35.23  Aligned_cols=25  Identities=32%  Similarity=0.639  Sum_probs=20.7

Q ss_pred             cCccccccccccccCHHHHHHhHhh
Q 008456          296 RSEFYCVLCGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       296 ~~~~~C~~C~K~F~s~~~~~nH~~S  320 (564)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        28 ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1          28 LRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             ccCCcCCCcCCEecCHHHHHHHHhc
Confidence            3568899999999999999999764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.95  E-value=0.21  Score=32.08  Aligned_cols=23  Identities=26%  Similarity=0.650  Sum_probs=20.4

Q ss_pred             cccccc--ccccccCHHHHHHhHhh
Q 008456          298 EFYCVL--CGKKFKSEKQWTNHEQS  320 (564)
Q Consensus       298 ~~~C~~--C~K~F~s~~~~~nH~~S  320 (564)
                      .|.|..  |+|.|.....|..|+++
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            477988  99999999999999864

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.31  E-value=0.43  Score=29.59  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=18.1

Q ss_pred             ccccccccccCHHHHHHhHh
Q 008456          300 YCVLCGKKFKSEKQWTNHEQ  319 (564)
Q Consensus       300 ~C~~C~K~F~s~~~~~nH~~  319 (564)
                      .|+.|.|+|+|.--++-|.+
T Consensus         2 qcp~c~k~f~skyylkvhnr   21 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR   21 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccc
Confidence            59999999999999998865