Citrus Sinensis ID: 008485

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----
MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTPDPSFCKSVLPNQTANVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASAWSVKNGLSLPLSNDTKLYSVSLALFTKAWVPKKKKATAWQPTRKQRLFRNGRLPFKMSEKTRVVYETVSRRKLLQAAPDDEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI
ccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEccccccccccHHHHHHHccccccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEccccccccccccccEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEcccEEEcccEEEEEccEEEEEccccccccEEEcccccccccccEEEEEccEEEEccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHHcccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEcccEEEEcccccccccHHHHHHHccccccccccEEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHccccccccc
MASKLFFVITIPILIALlpvfarpshatdvapttpvsagsvckstpdpsfcksvlpnqtanvytyGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTAIRALEDCRLLAGFNMDFLLSSFEtvnstsktlptmqadDVQTFLSAILTNQQTCFDGLQDTASAWSvknglslplsndtklYSVSLALFTkawvpkkkkatawqptrkqrlfrngrlpfkmsekTRVVYETVSRRKllqaapddevlvSDIVTvsqdgsgnftTITDAinvapnntdvtnGYFLIYITAGVYEEYISISKNKknlmiigdginqtvitgnrsvvdgwttfnsatfavvAPKFVAVNITIRNTAGAIKHQAVALRngadlstfyscSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQncniyprlpmsgqfnaitaqgrtdpnqntgtsihnctirassdlasgsqtvqtylgrpwkeysRTVYMQSFmdssinpagwqiwsgdFALSTLYYAeynntgpgsntanrvtwpgyhvtinatdaanftvsnfllgddwipqtgvsytgali
MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTpdpsfcksvlpnQTANVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASAWSVKNGLSLPLSNDTKLYSVSLALFtkawvpkkkkatawqptrkqrlfrngrlpfkmsektrvVYETVSRRkllqaapddevlvSDIVTVSQDGSGNFTTITDAinvapnntdvtNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTirassdlasgsqTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLlgddwipqtgvsytgali
MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTPDPSFCKSVLPNQTANVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASAWSVKNGLSLPLSNDTKLYSVSLALFTKAWVPKKKKATAWQPTRKQRLFRNGRLPFKMSEKTRVVYETVSRRKLLQAAPDDEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI
****LFFVITIPILIALLPVFARPSHAT********************SFCKSVLPNQTANVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASAWSVKNGLSLPLSNDTKLYSVSLALFTKAWVPKKKKATAWQPTRKQRLFRNGRLPFKMSEKTRVVYETVSRRKLLQAAPDDEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAIT***************HNCTIR*********QTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYT****
*ASKLFFVITIPILIALLP*********************VCKSTPDPSFCK***************FSIRKALWQSRK*********************ALEDCRLLAGFNMDFLLSSFETV*********MQADDVQTFLSAILTNQQTCFDGLQDT*************LSNDTKLYSVSLALFTKA****************************MSEKTRVVYETVS************VLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI
MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTPDPSFCKSVLPNQTANVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASAWSVKNGLSLPLSNDTKLYSVSLALFTKAWV**********PTRKQRLFRNGRLPFKMSEKTRVVYETVSRRKLLQAAPDDEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI
*ASKLFFVITIPILIALLPVFAR*********TTPVSAGSVCKSTPDPSFCKSVLPNQTANVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASAWSVKNGLSLPLSNDTKLYSVSLALFTKAWVP*****************************TRVVYETVSRRKLLQAAPDDEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI
iiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTPDPSFCKSVLPNQTANVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASAWSVKNGLSLPLSNDTKLYSVSLALFTKAWVPKKKKATAWQPTRKQRLFRNGRLPFKMSEKTRVVYETVSRRKLLQAAPDDEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query564 2.2.26 [Sep-21-2011]
Q9SRX4579 Probable pectinesterase/p yes no 0.980 0.955 0.655 0.0
Q8RXK7573 Probable pectinesterase/p no no 0.934 0.919 0.670 0.0
O22256560 Probable pectinesterase/p no no 0.982 0.989 0.637 0.0
Q94CB1619 Probable pectinesterase/p no no 0.907 0.827 0.489 1e-145
Q9FF77624 Probable pectinesterase/p no no 0.907 0.820 0.480 1e-144
O04887510 Pectinesterase 2 OS=Citru no no 0.886 0.980 0.461 1e-119
O48711547 Probable pectinesterase/p no no 0.882 0.910 0.428 1e-112
Q43062522 Pectinesterase/pectineste N/A no 0.755 0.816 0.488 1e-109
O22149511 Probable pectinesterase/p no no 0.824 0.909 0.441 1e-109
P83947545 Pectinesterase/pectineste N/A no 0.764 0.790 0.462 1e-108
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function desciption
 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/589 (65%), Positives = 450/589 (76%), Gaps = 36/589 (6%)

Query: 1   MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTPDPSFCKSVLPNQTA 60
           M S +F +IT+   +           +   +  T  ++ ++CK+TPDP +CKSV P+   
Sbjct: 1   MESPIFILITLSFFL----------QSVLASSQTLSNSSTICKTTPDPKYCKSVFPHSQG 50

Query: 61  NVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATLSTTA-IRALEDCRLLAGFNMDFLLSS 119
           NV  YG FSIRK+L QSRKF+  VD+Y+ R A LS  A IRAL+DCR LAG  MD+LL+S
Sbjct: 51  NVQQYGCFSIRKSLSQSRKFIRTVDRYIKRNAHLSQPAVIRALQDCRFLAGLTMDYLLTS 110

Query: 120 FETVNSTS-----KTLPTMQADDVQTFLSAILTNQQTCFDGLQDTAS---AWSVKNGLSL 171
           FETVN TS     K L   +ADD+QT LSA LTN+QTC +GL   AS    W+V+ G++L
Sbjct: 111 FETVNDTSAKTSFKPLSFPKADDIQTLLSAALTNEQTCLEGLTTAASYSATWTVRTGVAL 170

Query: 172 PLSNDTKLYSVSLALFTKAWVPKKKKAT--AW-QP-------TRKQRLFRNGRLPFKMSE 221
           PL NDTKL  VSLALFTK WVPKKKK    AW QP       T+  RLFRNG LP KM+E
Sbjct: 171 PLVNDTKLLGVSLALFTKGWVPKKKKRAGFAWAQPRSGSSTHTKPFRLFRNGALPLKMTE 230

Query: 222 KTRVVYETVSRRKLLQAAPDDE------VLVSDIVTVSQDGSGNFTTITDAINVAPNNTD 275
           KT+ VYE++SRRKL     + +      VL+SDIVTVSQDG+GNFT IT A+  APNNTD
Sbjct: 231 KTKAVYESLSRRKLADGDSNGDGDDGSMVLISDIVTVSQDGTGNFTNITAAVAAAPNNTD 290

Query: 276 VTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAV 335
            + G+FLIY+TAG+YEEYISI+KNK+ +M+IGDGINQTV+TGNRSVVDGWTTFNSATFAV
Sbjct: 291 GSAGFFLIYVTAGIYEEYISIAKNKRYMMMIGDGINQTVVTGNRSVVDGWTTFNSATFAV 350

Query: 336 VAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECD 395
            AP FVAVNIT RNTAG  KHQAVALR+GAD S FYSCSFEAYQDTLYTHSLRQFYRECD
Sbjct: 351 TAPNFVAVNITFRNTAGPEKHQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYRECD 410

Query: 396 IYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSD 455
           +YGTVDFIFGNAAVV QNCN+YPR PM  QFNAITAQGR+DPNQNTGTSI NCTI+ + D
Sbjct: 411 VYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADD 470

Query: 456 LASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGP 515
           L S + TV+TYLGRPWKEYSRTVYMQS++D  + P GW+ W+GDFALSTLYYAEYNNTGP
Sbjct: 471 LVSSNYTVKTYLGRPWKEYSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGP 530

Query: 516 GSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI 564
           GSNT NRVTWPGYHV IN+TDAANFTV+   +  DWI +TGV YT  LI
Sbjct: 531 GSNTTNRVTWPGYHV-INSTDAANFTVTGLFIEADWIWKTGVPYTSGLI 578
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function description
>sp|O22256|PME20_ARATH Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query564
255564230566 Pectinesterase-2 precursor, putative [Ri 0.948 0.945 0.797 0.0
224128446560 predicted protein [Populus trichocarpa] 0.987 0.994 0.758 0.0
224068368558 predicted protein [Populus trichocarpa] 0.989 1.0 0.753 0.0
356536715559 PREDICTED: probable pectinesterase/pecti 0.982 0.991 0.739 0.0
356572750555 PREDICTED: probable pectinesterase/pecti 0.939 0.954 0.771 0.0
356505590556 PREDICTED: probable pectinesterase/pecti 0.939 0.953 0.769 0.0
356500319553 PREDICTED: probable pectinesterase/pecti 0.945 0.963 0.748 0.0
359479963556 PREDICTED: probable pectinesterase/pecti 0.962 0.976 0.718 0.0
449436465560 PREDICTED: probable pectinesterase/pecti 0.959 0.966 0.688 0.0
356503911615 PREDICTED: LOW QUALITY PROTEIN: probable 0.991 0.908 0.684 0.0
>gi|255564230|ref|XP_002523112.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223537674|gb|EEF39297.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/537 (79%), Positives = 477/537 (88%), Gaps = 2/537 (0%)

Query: 29  DVAPTTPVSAGSVCKSTPDPSFCKSVLPNQTANVYTYGRFSIRKALWQSRKFLNLVDKYL 88
           D  P+ P S GS+C STP+P++CKSVLP   ANVY YGR+S+RK+L QSRKFL+LVDKYL
Sbjct: 31  DSPPSNPTSPGSLCNSTPEPAYCKSVLPKHNANVYDYGRYSVRKSLSQSRKFLSLVDKYL 90

Query: 89  TRRATLSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTN 148
            RR++LS +AIRALEDCRLLAG NMDFLL+SF TVN++S TL +++ADDVQTFLSAILTN
Sbjct: 91  ARRSSLSISAIRALEDCRLLAGLNMDFLLNSFHTVNTSSTTLSSLKADDVQTFLSAILTN 150

Query: 149 QQTCFDGLQDTASAWSVKNGLSLPLSNDTKLYSVSLALFTKAWVPKKKKATAWQPTRKQR 208
           QQTC +GLQ TASAWSVKNGL++PLSNDTKLYSVSLALFTK WVPKKKK   WQPT KQ 
Sbjct: 151 QQTCLEGLQATASAWSVKNGLAVPLSNDTKLYSVSLALFTKGWVPKKKKGRTWQPTGKQL 210

Query: 209 LFRNGRLPFKMSEKTRVVYETVSRRKLLQAA-PDDEVLVSDIVTVSQDGSGNFTTITDAI 267
            F NGRLP +MS KTR V+E+VSRRKLLQ    +D VLVSDIVTV+Q+G+G+FTTI DA+
Sbjct: 211 AFSNGRLPLRMSSKTRTVFESVSRRKLLQTDDQNDAVLVSDIVTVNQNGTGDFTTINDAV 270

Query: 268 NVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTT 327
             APNNTD +NGYF+I++TAGVYEEY+SI KNKK LM++G GINQT+ITGNRSVVDGWTT
Sbjct: 271 AAAPNNTDGSNGYFMIFVTAGVYEEYVSIPKNKKYLMMVGAGINQTIITGNRSVVDGWTT 330

Query: 328 FNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSL 387
           FNSATFAVVAP +V VNIT RNTAGAIKHQAVALR+GADLSTFYSCSFE YQDTLYTHSL
Sbjct: 331 FNSATFAVVAPNYVGVNITFRNTAGAIKHQAVALRSGADLSTFYSCSFEGYQDTLYTHSL 390

Query: 388 RQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHN 447
           RQFY ECDIYGTVDFIFGNAAVV QNCN+YPRLPMSGQFNAITAQGRTDPNQNTGTSIHN
Sbjct: 391 RQFYSECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHN 450

Query: 448 CTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYY 507
           CTIRA+ DLAS + TV+TYLGRPWKEYSRTVYMQS+MDS I+PAGWQIWSGDF LSTLYY
Sbjct: 451 CTIRAADDLASSNSTVRTYLGRPWKEYSRTVYMQSYMDSLIHPAGWQIWSGDFVLSTLYY 510

Query: 508 AEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI 564
           AEYNNTGPGS+T NRVTW GYHV INATDAANFTVS FLLG DWIP+TGV +T ALI
Sbjct: 511 AEYNNTGPGSDTNNRVTWEGYHV-INATDAANFTVSGFLLGQDWIPRTGVPFTAALI 566

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128446|ref|XP_002320332.1| predicted protein [Populus trichocarpa] gi|222861105|gb|EEE98647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068368|ref|XP_002302726.1| predicted protein [Populus trichocarpa] gi|222844452|gb|EEE81999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356536715|ref|XP_003536881.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356572750|ref|XP_003554529.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356505590|ref|XP_003521573.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356500319|ref|XP_003518980.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|359479963|ref|XP_002268492.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436465|ref|XP_004136013.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356503911|ref|XP_003520743.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query564
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.985 0.970 0.644 8.7e-198
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 0.982 0.989 0.636 1.1e-195
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.716 0.697 0.726 5.5e-164
TAIR|locus:2103212619 AT3G10720 [Arabidopsis thalian 0.948 0.864 0.484 9.8e-135
TAIR|locus:2175334624 AT5G04970 [Arabidopsis thalian 0.939 0.849 0.472 5.2e-134
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.576 0.616 0.542 1.5e-108
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.560 0.618 0.581 4e-104
TAIR|locus:2066195547 AT2G26440 [Arabidopsis thalian 0.952 0.981 0.418 5.3e-104
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.888 0.904 0.438 2.1e-100
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.579 0.587 0.540 2.5e-100
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1915 (679.2 bits), Expect = 8.7e-198, P = 8.7e-198
 Identities = 374/580 (64%), Positives = 453/580 (78%)

Query:     1 MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTPDPSFCKSVLPNQT- 59
             M S   F++T+   ++L  +F     +  + P+   S+ ++CK+TPDP FCKSV P  + 
Sbjct:     1 MLSLKLFLVTL--FLSLQTLFIA---SQTLLPSN--SSSTICKTTPDPKFCKSVFPQTSQ 53

Query:    60 ANVYTYGRFSIRKALWQSRKFLNLVDKYLTRR-ATLSTTAIRALEDCRLLAGFNMDFLLS 118
              +V  YGRFS+RK+L QSRKF   +D+YL R  A LS +A+ AL+DCR LA    D+L++
Sbjct:    54 GDVREYGRFSLRKSLTQSRKFTRTIDRYLKRNNALLSQSAVGALQDCRYLASLTTDYLIT 113

Query:   119 SFETVNST--SKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASA-WSVKNGLSLPLSN 175
             SFETVN T  SKTL   +AD++QT LSA LTN+QTC DG+   AS+ W+++NG++LPL N
Sbjct:   114 SFETVNITTSSKTLSFSKADEIQTLLSAALTNEQTCLDGINTAASSSWTIRNGVALPLIN 173

Query:   176 DTKLYSVSLALFTKAWVPKKKKATA---W-QP------TRKQRLFRNGRLPFKMSEKTRV 225
             DTKL+SVSLALFTK WVPKKKK  A   W  P      T+  R FRNG LP KM+E TR 
Sbjct:   174 DTKLFSVSLALFTKGWVPKKKKQVASYSWAHPKNTHSHTKPFRHFRNGALPLKMTEHTRA 233

Query:   226 VYETVSRRKLLQAAPD-DEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIY 284
             VYE++SRRKL     D + VLVSDIVTV+Q+G+GNFTTIT+A+N APN TD T GYF+IY
Sbjct:   234 VYESLSRRKLADDDNDVNTVLVSDIVTVNQNGTGNFTTITEAVNSAPNKTDGTAGYFVIY 293

Query:   285 ITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVN 344
             +T+GVYEE + I+KNK+ LM+IGDGIN+TV+TGNR+VVDGWTTFNSATFAV +P FVAVN
Sbjct:   294 VTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNRNVVDGWTTFNSATFAVTSPNFVAVN 353

Query:   345 ITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIF 404
             +T RNTAG  KHQAVA+R+ ADLS FYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIF
Sbjct:   354 MTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIF 413

Query:   405 GNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQ 464
             GNAAVV Q+CN+YPR PM  QFNAITAQGRTDPNQNTG SIHNCTI+ + DL S + TV+
Sbjct:   414 GNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVK 473

Query:   465 TYLGRPWKEYSRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVT 524
             TYLGRPWKEYSRTV+MQS++D  + P GW+ W+GDFALSTLYYAEYNNTG GS+T +RV 
Sbjct:   474 TYLGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVV 533

Query:   525 WPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGALI 564
             WPGYHV IN+TDA NFTV NFLLGD W+ Q+GV Y   L+
Sbjct:   534 WPGYHV-INSTDANNFTVENFLLGDGWMVQSGVPYISGLL 572
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IMP
GO:0042545 "cell wall modification" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0009741 "response to brassinosteroid stimulus" evidence=IEP
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066195 AT2G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRX4PME7_ARATH3, ., 1, ., 1, ., 1, 10.65530.98040.9550yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 0.0
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-161
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-160
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-152
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-148
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-147
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-146
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-145
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-139
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-138
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-134
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-133
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-129
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-127
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-116
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-113
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-109
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-108
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-108
PLN02197588 PLN02197, PLN02197, pectinesterase 2e-76
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 5e-68
PLN02432293 PLN02432, PLN02432, putative pectinesterase 2e-65
PLN02773317 PLN02773, PLN02773, pectinesterase 6e-60
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 7e-59
PLN02304379 PLN02304, PLN02304, probable pectinesterase 7e-56
PLN02497331 PLN02497, PLN02497, probable pectinesterase 5e-54
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 7e-50
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-49
PLN02634359 PLN02634, PLN02634, probable pectinesterase 5e-45
PLN02176340 PLN02176, PLN02176, putative pectinesterase 4e-40
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 8e-31
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 3e-21
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 3e-20
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-13
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 4e-07
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  998 bits (2581), Expect = 0.0
 Identities = 435/570 (76%), Positives = 481/570 (84%), Gaps = 11/570 (1%)

Query: 1   MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTPDPSFCKSVLP-NQT 59
           M+SKL  + T   L  LL +F   S A+D  P+TPVS  ++C +TPDPSFCKSVLP NQ 
Sbjct: 1   MSSKLILLTT---LALLLLLFFSSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLPHNQP 57

Query: 60  ANVYTYGRFSIRKALWQSRKFLNLVDKYLTRRATL-STTAIRALEDCRLLAGFNMDFLLS 118
            NVY YGRFS+RK+L QSRKFL+LVD+YL R +TL S +AIRALEDC+ LAG N+DFLLS
Sbjct: 58  GNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLS 117

Query: 119 SFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQDTASAWSVKNGLSLPLSNDTK 178
           SFETVNS+SKTL   QADDVQT LSAILTNQQTC DGLQ  +SAWSV+NGL++PLSNDTK
Sbjct: 118 SFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLAVPLSNDTK 177

Query: 179 LYSVSLALFTKAWVPKKKKA----TAWQPTRKQRLFRNGRLPFKMSEKTRVVYETVSRRK 234
           LYSVSLALFTK WVPKKKK           +  R FRNGRLP KM+EKTR VYE+VSRRK
Sbjct: 178 LYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAFRNGRLPLKMTEKTRAVYESVSRRK 237

Query: 235 LLQAAPDDEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYI 294
           LL    +  VLVSDIVTV+Q+G+GNFTTI DA+  APNNTD +NGYF+IY+TAGVYEEY+
Sbjct: 238 LLDGDANA-VLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEYV 296

Query: 295 SISKNKKNLMIIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAI 354
           SI KNKK LM+IGDGINQTVITGNRSVVDGWTTFNSATFAVV   FVAVNIT RNTAG  
Sbjct: 297 SIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGPA 356

Query: 355 KHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNC 414
           KHQAVALR+GADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVV QNC
Sbjct: 357 KHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNC 416

Query: 415 NIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEY 474
           N+YPRLPM GQFN ITAQGRTDPNQNTGTSI NCTI+A+ DLAS + TV+TYLGRPWKEY
Sbjct: 417 NLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEY 476

Query: 475 SRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINA 534
           SRTV MQS++D  I+PAGW  WSGDFALSTLYYAEYNNTGPGS+T NRVTWPGYHV INA
Sbjct: 477 SRTVVMQSYIDGLIDPAGWMPWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHV-INA 535

Query: 535 TDAANFTVSNFLLGDDWIPQTGVSYTGALI 564
           TDAANFTVSNFLLGD W+PQTGV +T  LI
Sbjct: 536 TDAANFTVSNFLLGDGWLPQTGVPFTSGLI 565

Length = 566
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 564
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02197588 pectinesterase 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.94
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.93
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.89
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.34
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.69
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.62
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.58
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.11
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.52
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.1
KOG1777 625 consensus Putative Zn-finger protein [General func 96.64
PLN02218431 polygalacturonase ADPG 96.52
PLN02773317 pectinesterase 96.29
PLN02682369 pectinesterase family protein 96.26
PLN02793443 Probable polygalacturonase 96.21
PRK10531422 acyl-CoA thioesterase; Provisional 96.19
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.09
PLN02480343 Probable pectinesterase 95.97
PLN02497331 probable pectinesterase 95.74
PLN02176340 putative pectinesterase 95.71
PLN02671359 pectinesterase 95.7
PLN02634359 probable pectinesterase 95.45
PLN02432293 putative pectinesterase 95.33
PLN02665366 pectinesterase family protein 95.32
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.32
PLN03010409 polygalacturonase 95.24
PLN02304379 probable pectinesterase 95.22
PLN03003456 Probable polygalacturonase At3g15720 95.09
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.05
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.57
PLN02916502 pectinesterase family protein 94.32
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.24
PLN02197588 pectinesterase 94.21
smart00656190 Amb_all Amb_all domain. 94.19
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.13
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.09
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.96
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.89
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.87
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.79
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.67
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 93.39
PLN02314586 pectinesterase 93.34
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.3
PLN02301548 pectinesterase/pectinesterase inhibitor 93.19
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.05
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 93.02
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 92.88
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.83
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 92.79
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.67
PLN02155394 polygalacturonase 92.18
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.14
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 91.55
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 91.22
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 88.68
PLN02188404 polygalacturonase/glycoside hydrolase family prote 87.8
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 87.77
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 86.48
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 83.73
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1.8e-143  Score=1178.09  Aligned_cols=559  Identities=77%  Similarity=1.210  Sum_probs=495.4

Q ss_pred             CcccchhhhhHHHHHHHHHHhhCccCCCCCCCCCcchhhcccCCCCCccchhccCCCC-CCCHHHHHHHHHHHHHHHHHH
Q 008485            1 MASKLFFVITIPILIALLPVFARPSHATDVAPTTPVSAGSVCKSTPDPSFCKSVLPNQ-TANVYTYGRFSIRKALWQSRK   79 (564)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~C~~T~yp~lC~~sL~~~-~~dp~~L~~~al~~a~~~a~~   79 (564)
                      |++||   ++|+-|.||||+|+.++.+..+.|..+.+++.+|+.|+||++|+++|+.. +.+|++|++++|+++++++..
T Consensus         1 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~C~~T~YP~~C~ssLs~s~~~d~~~l~~aaL~~tl~~a~~   77 (566)
T PLN02713          1 MSSKL---ILLTTLALLLLLFFSSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLPHNQPGNVYDYGRFSVRKSLSQSRK   77 (566)
T ss_pred             CchhH---HHHHHHHHHHHHhcchhhhcCCCcCCCCCCccccCCCCChHHHHHHhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            67766   45666777888888888888887777789999999999999999999863 579999999999999999999


Q ss_pred             HHHHHHHHHhhccC-CCHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHhhhhhhHhhhccC
Q 008485           80 FLNLVDKYLTRRAT-LSTTAIRALEDCRLLAGFNMDFLLSSFETVNSTSKTLPTMQADDVQTFLSAILTNQQTCFDGLQD  158 (564)
Q Consensus        80 a~~~i~~ll~~~~~-~d~~~k~AL~DC~el~~daid~L~~S~~~l~~~~~~~~~~~~~Dv~TWLSAAlT~q~TC~DGF~e  158 (564)
                      +...++++....+. .+++++.||+||+|||++++|+|++++.+|+..+...+....+|++||||||||||+||+|||.+
T Consensus        78 a~~~vs~L~~~~~~~~~~r~k~AL~DC~ELlddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~~  157 (566)
T PLN02713         78 FLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQA  157 (566)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhhhhc
Confidence            99999987654322 38899999999999999999999999999985433234567899999999999999999999987


Q ss_pred             CccccccccccccccchhHHHHHHHHHhhccccccccccc-ccC---CcccccccccCCCCCccccccccceeeeccccc
Q 008485          159 TASAWSVKNGLSLPLSNDTKLYSVSLALFTKAWVPKKKKA-TAW---QPTRKQRLFRNGRLPFKMSEKTRVVYETVSRRK  234 (564)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~~~L~SNaLAiv~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~r~  234 (564)
                      .+.+..+++.|...+.++++|+||+|||++.......... ...   ...|++++.++++||+||+..++.+++.+.+||
T Consensus       158 ~~~~~~~k~~v~~~l~nvt~LtSNaLAlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~d~~~~~~~~~R~  237 (566)
T PLN02713        158 ASSAWSVRNGLAVPLSNDTKLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAFRNGRLPLKMTEKTRAVYESVSRRK  237 (566)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccchhccccCCCCcCccccccccccccccch
Confidence            6533356777888899999999999999996322211110 000   013445544445799999998888888888999


Q ss_pred             ccccCCCCcccccceEEEcCCCCCCcccHHHHHHhCCCCCCCCCceEEEEEcCcEEeeeEEEEecCcceEEeecCCcceE
Q 008485          235 LLQAAPDDEVLVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTV  314 (564)
Q Consensus       235 ~l~~~~~~~~~~~~~~~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~ti  314 (564)
                      ||+... ....+..+++|++||+|+|+|||+||+++|.+...+.+|++||||||+|+|+|+|+++|+||+|+|+|+++||
T Consensus       238 ll~~~~-~~~~~~~~~~Va~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~Ti  316 (566)
T PLN02713        238 LLDGDA-NAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEYVSIPKNKKYLMMIGDGINQTV  316 (566)
T ss_pred             hhcCcc-ccccCCceEEECCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEEEEEecCCCceEEEEecCCCCcE
Confidence            998532 2223445799999999999999999999999743346799999999999999999999999999999999999


Q ss_pred             EeccccccCCcccccceeEEEEcCCeEEEeeEEeeCCCCcccceeeEecCCCceEEEeCccccccceEeecCcceeeecc
Q 008485          315 ITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYREC  394 (564)
Q Consensus       315 I~~~~~~~~g~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~C  394 (564)
                      |+|++++.+|++|++||||.|.|++|+++||||+|++|+.++||||||+++|+++||||+|+|||||||+|.+|||||+|
T Consensus       317 It~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C  396 (566)
T PLN02713        317 ITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYREC  396 (566)
T ss_pred             EEcCCcccCCCccccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccceeeecceeEeeeeeeeeeCCCCCCceeEEecCCCCCCCCceEEEEccEEeecCCCCCCCCcceEEeeccccCc
Q 008485          395 DIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEY  474 (564)
Q Consensus       395 ~I~G~vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~  474 (564)
                      +|+|+||||||+|++|||||+|++|+|++++.|+||||||+++++++||||+||+|++++++.+.....++||||||++|
T Consensus       397 ~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y  476 (566)
T PLN02713        397 DIYGTVDFIFGNAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEY  476 (566)
T ss_pred             EEecccceecccceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCc
Confidence            99999999999999999999999999988889999999999999999999999999999988766566789999999999


Q ss_pred             CcEEEeccCCCCccCCCCCcCCCCCCCCCccEEEEecccCCCCCCCCccccCCccccCCHHHHcccchhccccCCCCcCC
Q 008485          475 SRTVYMQSFMDSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQ  554 (564)
Q Consensus       475 sr~v~~~s~i~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~g~~W~p~  554 (564)
                      ||||||+|+|+++|+|+||.+|++++.++|+||+||+|+|||+++++||+|+|+|+ |+.+||.+||+.+||+|++|+|.
T Consensus       477 sr~V~~~s~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~s~Rv~w~g~~~-l~~~ea~~ft~~~fi~g~~Wl~~  555 (566)
T PLN02713        477 SRTVVMQSYIDGLIDPAGWMPWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHV-INATDAANFTVSNFLLGDGWLPQ  555 (566)
T ss_pred             ceEEEEecccCCeecccccCCCCCCCCCCceEEEEecccCCCCCcCCCccccceee-cCHHHhhhccHhheeCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999988 99999999999999999999999


Q ss_pred             CCCCccCCCC
Q 008485          555 TGVSYTGALI  564 (564)
Q Consensus       555 ~~vp~~~~~~  564 (564)
                      +||||++||+
T Consensus       556 ~gvp~~~gl~  565 (566)
T PLN02713        556 TGVPFTSGLI  565 (566)
T ss_pred             CCCCcccccC
Confidence            9999999985

>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 7e-97
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-96
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-22
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-22
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-21
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-18
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  351 bits (900), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 170/312 (54%), Positives = 211/312 (67%), Gaps = 3/312 (0%)
Query: 252 VSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGIN 311
           V+QDG+G++ T+ +A+  AP+ +      ++IY+  G Y+E + ++ NK NLMI+GDG+ 
Sbjct: 7   VAQDGTGDYQTLAEAVAAAPDKSKTR---YVIYVKRGTYKENVEVASNKMNLMIVGDGMY 63
Query: 312 QTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFY 371
            T ITG+ +VVDG TTF SAT A V   F+  +I I+NTAG  K QAVALR GAD+S   
Sbjct: 64  ATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVIN 123
Query: 372 SCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITA 431
            C  +AYQDTLY HS RQFYR+  + GTVDFIFGNAAVV Q C +  R P   Q N +TA
Sbjct: 124 RCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTA 183
Query: 432 QGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSINPA 491
           QGRTDPNQ TGTSI  C I ASSDL    +   TYLGRPWKEYSRTV M+S++   INPA
Sbjct: 184 QGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPA 243
Query: 492 GWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDW 551
           GW  W GDFAL TLYY E+ N GPG+ T+ RV WPGYHV  +   A  FTV+  + G  W
Sbjct: 244 GWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSW 303
Query: 552 IPQTGVSYTGAL 563
           +  TGV+Y   L
Sbjct: 304 LRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-172
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-171
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-129
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-127
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-102
1x91_A153 Invertase/pectin methylesterase inhibitor family p 5e-20
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 1e-18
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  488 bits (1259), Expect = e-172
 Identities = 171/319 (53%), Positives = 216/319 (67%), Gaps = 4/319 (1%)

Query: 245 LVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLM 304
           ++++ V V+QDG+G++ T+ +A+  AP+ +      ++IY+  G Y+E + ++ NK NLM
Sbjct: 1   IIANAV-VAQDGTGDYQTLAEAVAAAPDKS---KTRYVIYVKRGTYKENVEVASNKMNLM 56

Query: 305 IIGDGINQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNG 364
           I+GDG+  T ITG+ +VVDG TTF SAT A V   F+  +I I+NTAG  K QAVALR G
Sbjct: 57  IVGDGMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVG 116

Query: 365 ADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSG 424
           AD+S    C  +AYQDTLY HS RQFYR+  + GTVDFIFGNAAVV Q C +  R P   
Sbjct: 117 ADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKY 176

Query: 425 QFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFM 484
           Q N +TAQGRTDPNQ TGTSI  C I ASSDL    +   TYLGRPWKEYSRTV M+S++
Sbjct: 177 QQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYL 236

Query: 485 DSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSN 544
              INPAGW  W GDFAL TLYY E+ N GPG+ T+ RV WPGYHV  +   A  FTV+ 
Sbjct: 237 GGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAK 296

Query: 545 FLLGDDWIPQTGVSYTGAL 563
            + G  W+  TGV+Y   L
Sbjct: 297 LIQGGSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query564
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.95
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.95
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.94
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.62
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.42
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.49
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.26
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.01
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.49
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.49
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.27
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.26
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.25
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.2
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.17
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.1
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.01
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.01
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.95
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.93
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.92
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.81
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.75
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.67
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.37
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.33
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.04
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.83
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.61
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.56
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.14
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.92
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.91
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.91
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.88
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.7
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.54
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 92.49
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 91.38
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 89.83
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 88.58
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 88.21
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 86.55
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 86.35
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 84.88
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 84.83
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 83.64
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 83.22
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 82.59
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=3.1e-95  Score=752.03  Aligned_cols=314  Identities=54%  Similarity=0.930  Sum_probs=299.7

Q ss_pred             cceEEEcCCCCCCcccHHHHHHhCCCCCCCCCceEEEEEcCcEEeeeEEEEecCcceEEeecCCcceEEeccccccCCcc
Q 008485          247 SDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDGWT  326 (564)
Q Consensus       247 ~~~~~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~tiI~~~~~~~~g~~  326 (564)
                      +++++|++||+|+|+|||+||++||++   +.+|++|+|+||+|+|+|+|++.|++|||+|+|+++|+|+++.+..+|.+
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~   78 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDK---SKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGST   78 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccC---CCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCc
Confidence            468999999999999999999999998   56789999999999999999999999999999999999999998888999


Q ss_pred             cccceeEEEEcCCeEEEeeEEeeCCCCcccceeeEecCCCceEEEeCccccccceEeecCcceeeeccEEEeccceeeec
Q 008485          327 TFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGN  406 (564)
Q Consensus       327 t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~C~I~G~vDFIfG~  406 (564)
                      |++++||.|.+++|+++||||+|++|+.++|||||++.+|+++|+||+|+|||||||++.+||||++|+|+|+||||||+
T Consensus        79 t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~  158 (317)
T 1xg2_A           79 TFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGN  158 (317)
T ss_dssp             SGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEEC
T ss_pred             ccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCC
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEeeeeeeeeeCCCCCCceeEEecCCCCCCCCceEEEEccEEeecCCCCCCCCcceEEeeccccCcCcEEEeccCCCC
Q 008485          407 AAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDS  486 (564)
Q Consensus       407 ~~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~i~~  486 (564)
                      ++++||+|+|+++++.+++.++||||||+++.+++||||+||+|++++++.+.....++||||||++|+|+|||+|+|++
T Consensus       159 ~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~  238 (317)
T 1xg2_A          159 AAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGG  238 (317)
T ss_dssp             CEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECT
T ss_pred             ceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCC
Confidence            99999999999999877888999999999999999999999999999877554445689999999999999999999999


Q ss_pred             ccCCCCCcCCCCCCCCCccEEEEecccCCCCCCCCccccCCccccC-CHHHHcccchhccccCCCCcCCCCCCccCCCC
Q 008485          487 SINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTI-NATDAANFTVSNFLLGDDWIPQTGVSYTGALI  564 (564)
Q Consensus       487 ~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l-~~~ea~~ft~~~fi~g~~W~p~~~vp~~~~~~  564 (564)
                      +|+|+||.+|++.+++++++|+||+|+|||+++++||+|+++|+ | +++||++|++.+||+|++|+|.+||||++||.
T Consensus       239 ~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~-l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          239 LINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHV-ITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             TBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEE-ECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             cccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccc-cCCHHHHHHhhHHhhcCCCCCcCCCCcccccccc
Confidence            99999999999988999999999999999999999999999877 5 57999999999999999999999999999984
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 564
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-144
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 9e-91
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 9e-17
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 9e-15
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 2e-05
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  418 bits (1075), Expect = e-144
 Identities = 173/314 (55%), Positives = 218/314 (69%), Gaps = 3/314 (0%)

Query: 250 VTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDG 309
           V V+ DGSG++ T+++A+  AP ++      ++I I AGVY E + + K KKN+M +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDS---KTRYVIRIKAGVYRENVDVPKKKKNIMFLGDG 65

Query: 310 INQTVITGNRSVVDGWTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLST 369
              T+IT +++V DG TTFNSAT A V   F+A +IT +NTAGA KHQAVALR G+DLS 
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSA 125

Query: 370 FYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAI 429
           FY C   AYQD+LY HS RQF+  C I GTVDFIFGNAAVVLQ+C+I+ R P SGQ N +
Sbjct: 126 FYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMV 185

Query: 430 TAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFMDSSIN 489
           TAQGRTDPNQNTG  I    I A+SDL     +  TYLGRPWKEYSRTV MQS + + IN
Sbjct: 186 TAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN 245

Query: 490 PAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGD 549
           PAGW  W G+FAL TLYY EY NTG G+ T+ RVTW G+ V  ++T+A  FT  +F+ G 
Sbjct: 246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305

Query: 550 DWIPQTGVSYTGAL 563
            W+  T   ++  L
Sbjct: 306 SWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query564
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.93
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.92
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.93
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.77
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.8
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.9
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.83
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.57
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.49
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.38
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.37
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.26
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.97
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.44
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.3
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.04
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.49
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.7
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 93.49
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 84.5
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 82.76
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 81.46
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 80.3
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.1e-98  Score=772.74  Aligned_cols=316  Identities=55%  Similarity=0.907  Sum_probs=303.7

Q ss_pred             cccceEEEcCCCCCCcccHHHHHHhCCCCCCCCCceEEEEEcCcEEeeeEEEEecCcceEEeecCCcceEEeccccccCC
Q 008485          245 LVSDIVTVSQDGSGNFTTITDAINVAPNNTDVTNGYFLIYITAGVYEEYISISKNKKNLMIIGDGINQTVITGNRSVVDG  324 (564)
Q Consensus       245 ~~~~~~~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~tiI~~~~~~~~g  324 (564)
                      .++++++|++||+|||+|||+||+++|.+   +.+|++|+|+||+|+|+|+|++.|++|+|+|+|++.|+|+++.+..++
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~   80 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDG   80 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccC---CCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCC
Confidence            46789999999999999999999999998   678999999999999999999999999999999999999999988889


Q ss_pred             cccccceeEEEEcCCeEEEeeEEeeCCCCcccceeeEecCCCceEEEeCccccccceEeecCcceeeeccEEEeccceee
Q 008485          325 WTTFNSATFAVVAPKFVAVNITIRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIF  404 (564)
Q Consensus       325 ~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~C~I~G~vDFIf  404 (564)
                      .+|+.++||.|.+++|+++||||+|++|+.++|||||++.+||++||||+|+|||||||++.+||||++|+|+|+|||||
T Consensus        81 ~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIf  160 (319)
T d1gq8a_          81 STTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIF  160 (319)
T ss_dssp             CCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEE
T ss_pred             CccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEeeeeeeeeeCCCCCCceeEEecCCCCCCCCceEEEEccEEeecCCCCCCCCcceEEeeccccCcCcEEEeccCC
Q 008485          405 GNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRASSDLASGSQTVQTYLGRPWKEYSRTVYMQSFM  484 (564)
Q Consensus       405 G~~~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~i  484 (564)
                      |+++++||+|+|+++++..++.++||||+|+++.+++||||+||+|++++++.+.....++||||||++|+||||++|+|
T Consensus       161 G~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l  240 (319)
T d1gq8a_         161 GNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI  240 (319)
T ss_dssp             ESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEE
T ss_pred             cCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEeccc
Confidence            99999999999999988888889999999999999999999999999999876655567899999999999999999999


Q ss_pred             CCccCCCCCcCCCCCCCCCccEEEEecccCCCCCCCCccccCCccccCCHHHHcccchhccccCCCCcCCCCCCccCCC
Q 008485          485 DSSINPAGWQIWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVTINATDAANFTVSNFLLGDDWIPQTGVSYTGAL  563 (564)
Q Consensus       485 ~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~g~~W~p~~~vp~~~~~  563 (564)
                      +++|+|+||.+|++.+++++++|+||+|+|||+++++||+|++++..|+++||++|+.++||+|++|+|.+||||.+||
T Consensus       241 ~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             CTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             ccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999999988999999999999999999999999998766689999999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure