Citrus Sinensis ID: 008506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
Protein Sequence
MVMAENEGGDEQKEMVSGPKHVWNKNVVTSTGNDAPVMGASDSWPALSDAQTHHQRPKTNPAVVDSSFKLSSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAENQTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQSAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPAFSAENGDSRTSLSESDMKFSNLGTNHNISSEDLSQRTESARFGDYGTQGLERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHcccccEEHHHHHccHHHHHHcccHHHHHHHHHccccEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHccccccccccccccccccHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccHHcccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEHHHHEcHHHHHHHHHcHHHHHHHHHcccEEEEEcccEEEccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccEEEEcccHHHHHHccccccccccccccHHcccHHHHHHcHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHccccccEEEEEcccccccccHHHHHHHcccccccccHcccccccccccccccccc
Coil and Loop (DISEMBL)
mvmaeneggdeqkemvsgpkhvwnknvvtstgndapvmgasdswpalsdaqthhqrpktnpavvdssfklssdpqgavaqhkthgsgnsnpshkslpvrnhksgskrnpnaappfpvplsyhhpsamppvfhtmvppphfavpgyayppypgpfpgaenqtpvqafvppvhaidaarnvqpppprgdpnasvanfpnrrpntqepgghmnhawhhqrafgprdsvpvpqsigprplvrpaffgpapgpgymvgpgfpgaalcyvpvvppgsirgphpqrffpypvnsgapmlppetLALKANIVKQIEYyfsdenlqndHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDAlqnsstveaqgdkvrrrdewskwipasveqtmsstaqtsqsqsaenpvdsigngdinkdnkrempkenvgfssntgnlmenvppsfdsveiepdngeehcdeflllddgkpafsaengdsrtslsesdmkfsnlgtnhnissedlsqrtesarfgdygtqglersSTVAVQNLIELSNDFANTFMLDEELEIEQKTmkkddlsahkr
Flexible Loop (DISEMBL)
mvmaeneggdeqkemvsgpkhvwNKNVVTSTGNDAPVMGASDSWPALSDAQTHHQRPKTNPAVVDSSFKLSSDPQGAVAQHKthgsgnsnpshksLPVRNHKSGSKRNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAENQTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFIldalqnsstveaqgdkvrrrdeWSKWIPASveqtmsstaqtsqsqsaenpvdsigngdinkdnkremPKENVgfssntgnlmENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPAFSAENGDSRTSLSESDMKFSNlgtnhnissedlsqrtESARFGDYGTQGLERSSTVAVQNLIELSNDFANTFMLDEELEieqktmkkddlsahkr
Low Complexity Region (SEG)
MVMAENEGGDEQKEMVSGPKHVWNKNVVTSTGNDAPVMGASDSWPALSDAQTHHQRPKTNPAVVDSSFKLSSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHfavpgyayppypgpfpgaENQTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRPLVRpaffgpapgpgYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEqtmsstaqtsqsqsaENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPAFSAENGDSRTSLSESDMKFSNLGTNHNISSEDLSQRTESARFGDYGTQGLERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR
Disordered region (IsUnstruct)
*********************************************************************************************************************************VFHTMVPPPHFAVPGYAYPPYPG************AFVP*******************************************************************LVRPAFFGPAPGPGYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ*****************************************************************************************************L**************************************************************TVAVQNLIELSNDFANTFMLD********************
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************ALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWI***************************************************************************************************************************************************************FMLDEE******************
Disordered Region (DISEMBL)
****************SGPKHVWNKNVVTSTGNDAPVMGASDSW****************************************************************PNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAENQTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTV**********DEWSKWIPASV*******************VDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPAFSA**********ESDMKFSNLGTNHNISSEDLSQRTESARFGDYGTQGLERSSTVAVQNLIELSNDFANTFMLDEELEIEQKT***********
Disordered Region (DISPRO)
******************************************************************************************************************************MPPVFHTMVPPPHFAVPGYA************************************************************************FGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPAS***************SAE*******NG*INK**KR*MPKENVGFSSNTGNLMENVPPSFDSVEIE*********EFLLLDDGKPAFSAENG*******ESDMKFSNLGTNHN******SQRT**ARFGDYGTQGLERSSTVAVQNLIELSNDFANTFMLDEELEI***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVMAENEGGDEQKEMVSGPKHVWNKNVVTSTGNDAPVMGASDSWPALSDAQTHHQRPKTNPAVVDSSFKLSSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAENQTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQSAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPAFSAENGDSRTSLSESDMKFSNLGTNHNISSEDLSQRTESARFGDYGTQGLERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	563	2.2.26 [Sep-21-2011]
Q659C4	914	La-related protein 1B OS=	yes	no	0.177	0.109	0.44	3e-18
Q6PKG0	1096	La-related protein 1 OS=H	no	no	0.168	0.086	0.458	4e-17
Q6ZQ58	1072	La-related protein 1 OS=M	no	no	0.143	0.075	0.506	7e-17
Q9P6K0	475	Uncharacterized HTH La-ty	yes	no	0.186	0.221	0.387	4e-15
Q9VAW5	1673	La-related protein OS=Dro	yes	no	0.145	0.049	0.397	7e-12
Q9I7T7	1531	La-related protein CG1150	no	no	0.145	0.053	0.390	1e-11
Q71RC2	724	La-related protein 4 OS=H	no	no	0.179	0.139	0.394	1e-11
Q8BWW4	719	La-related protein 4 OS=M	no	no	0.179	0.140	0.394	2e-11
P25567	434	RNA-binding protein SRO9	yes	no	0.174	0.225	0.328	3e-09
P28049	427	Lupus La protein homolog	N/A	no	0.138	0.182	0.4	3e-09

>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 67/100 (67%)

Query: 280 FFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIAD 339
            + Y   +G  + P E   LK  I +QIEYYFS ENL+ D +L   MD QG++PI++IA 
Sbjct: 196 MYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAG 255

Query: 340 FKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKW 379
           F+RV+ ++T+L  IL+AL++S+ VE   +K+R++ E  KW
Sbjct: 256 FQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKW 295

Homo sapiens (taxid: 9606)

>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
           LK  I +QIEYYFS +NL+ D +L   MDA G++PI +IA F RV+ ++TD+  I  AL+
Sbjct: 403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 462

Query: 359 NSSTVEAQGDKVRRRDEWSKW-IPASVEQTMSSTAQ 393
           +S  VE   +KVRRR+E  KW +P  V+ + +  +Q
Sbjct: 463 DSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQ 498

Homo sapiens (taxid: 9606)

>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 56/81 (69%)

Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
           LK  I +QIEYYFS +NL+ D +L   MDA G++PI +IA F RV+ ++TD+  I  AL+
Sbjct: 378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 437

Query: 359 NSSTVEAQGDKVRRRDEWSKW 379
           +S  VE   +KVRRR+E  KW
Sbjct: 438 DSKVVEMVEEKVRRREEPEKW 458

Mus musculus (taxid: 10090)

>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1527.03 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 11/116 (9%)

Query: 272 IRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGW 331
           I+GP P     YPV      + P    ++A +  Q+EYYFS ENL  D +L   MD +G+
Sbjct: 302 IQGPFPN----YPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGY 357

Query: 332 VPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD-------KVRRRDEWSKWI 380
           VP+A +A F R+K  STDL  +  A + S  ++   D       KVRR++ WS WI
Sbjct: 358 VPLAFLASFNRIKSFSTDLNLLHAACKASDIIDVAIDLQSPMSIKVRRKETWSPWI 413

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5

 Score = 72.8 bits (177), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDAL 357
           ++K  I KQ+EYYFS +NL  D +L   MD +G++P+ +IA F RV  ++TD+  I++A+
Sbjct: 728 SIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAI 787

Query: 358 QNSSTVEA-QGDKVRRRDEWSKW 379
           + S  +E  +G KVR +   + W
Sbjct: 788 KESDKLELFEGYKVRTKTTPTTW 810

Drosophila melanogaster (taxid: 7227)

>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 48/82 (58%)

Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
           LK  +  Q+EYYFS ENL ND YL+S MD+  +VPI  +A F  V++++ D+  I + L+
Sbjct: 268 LKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLR 327

Query: 359 NSSTVEAQGDKVRRRDEWSKWI 380
            S  V+     +R R    + I
Sbjct: 328 ESPNVQVDDKGLRVRPNRKRCI 349

Drosophila melanogaster (taxid: 7227)

>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 270 GSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQ 329
           G I GP    +  Y V SG       T  LK  + KQ+E+ FS ENL  D YLIS MD+ 
Sbjct: 91  GMILGPEDLSYQIYDV-SGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSD 149

Query: 330 GWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEA--QGDKVR 371
            ++PI  +A+ + +K+++TD   IL+ L++S  V+   +G+KVR
Sbjct: 150 QFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR 193

Plays a role in the regulation of cell morphology and cytoskeletal organization.

Homo sapiens (taxid: 9606)

>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 270 GSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQ 329
           G I GP    +  Y V SG       T  LK  + KQ+E+ FS ENL  D YLIS MD+ 
Sbjct: 87  GMILGPEDLSYQLYDV-SGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSD 145

Query: 330 GWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEA--QGDKVR 371
            +VPI  +A+ + +K+++T+   IL+ L++S  V+   +G+KVR
Sbjct: 146 QFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVR 189

Plays a role in the regulation of cell morphology and cytoskeletal organization.

Mus musculus (taxid: 10090)

>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRO9 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 39/137 (28%)

Query: 278 QRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAII 337
           Q+F+P         + P  +A+  NI +QIEYYFS+ENL  D+YL S +   G+ P+++I
Sbjct: 250 QQFYP---------VQPVLMAIN-NIARQIEYYFSEENLTVDNYLRSKLSKDGFAPLSLI 299

Query: 338 ADFKRVKRMS--TDLPFILDALQNSSTVEA-------------QGDKVR----------- 371
           + F RV  MS   D   IL AL+     EA             +GD V            
Sbjct: 300 SKFYRVVNMSFGGDTNLILAALREIVANEAATVNVAEGTLAAKEGDNVTGEAKEPSPLDK 359

Query: 372 ---RRDEWSKWIPASVE 385
              R   WS W+P + E
Sbjct: 360 YFVRSKSWSNWLPETFE 376

May overlap in function with tropomyosin and may be involved in organization of actin filaments. Acts as a multicopy suppressor of RHO3 mutation. RNA-binding protein which may modulate mRNA translation. Involved in heme regulation of HAP1, as a component of the high-molecular-weight complex (HMC).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 294 PETLALKANIVKQIEYYFSDENLQNDHYLIS--LMDAQGWVPIAIIADFKRVKRMSTDLP 351
            E L L   I +QIEYYF D NL  D +L    L+D  GWVP+  +  F R+ +++TD  
Sbjct: 7   KEQLDLDTKICEQIEYYFGDHNLPRDKFLKQQVLLD-NGWVPLETMIKFNRLSKLTTDFN 65

Query: 352 FILDALQNSST----VEAQGDKVRR 372
            IL AL+ S T    +  +  K+RR
Sbjct: 66  IILQALKKSKTELLEINEEKCKIRR 90

La protein plays a role in the transcription of RNA polymerase III. It is most probably a transcription termination factor. Binds to the 3' termini of virtually all nascent polymerase III transcripts.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
359479076	903	PREDICTED: uncharacterized protein LOC10	0.980	0.611	0.535	1e-152
255557168	867	lupus la ribonucleoprotein, putative [Ri	0.936	0.607	0.517	1e-143
147809815	662	hypothetical protein VITISV_006639 [Viti	0.850	0.723	0.562	1e-141
224104601	541	predicted protein [Populus trichocarpa]	0.904	0.940	0.508	1e-137
356554253	926	PREDICTED: la-related protein 1-like [Gl	0.937	0.570	0.492	1e-127
356499283	864	PREDICTED: la-related protein 1-like [Gl	0.943	0.614	0.490	1e-123
224059244	568	predicted protein [Populus trichocarpa]	0.902	0.894	0.455	1e-122
296083998	841	unnamed protein product [Vitis vinifera]	0.920	0.615	0.468	1e-122
357493683	911	La-related protein [Medicago truncatula]	0.934	0.577	0.439	1e-106
449463867	881	PREDICTED: la-related protein 1-like [Cu	0.859	0.549	0.452	1e-105

>gi|359479076|ref|XP_002272083.2| PREDICTED: uncharacterized protein LOC100254731 [Vitis vinifera]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 315/588 (53%), Positives = 382/588 (64%), Gaps = 36/588 (6%)

Query: 1   MVMAENE-GGDEQKEMVSGPKHVWNKNVV-TSTGNDAPVMGASDSWPALSDAQT-HHQRP 57
           MVMAENE GG++ KE+  G K  W + +   + G D PVMGA +SWPALSDAQ   +  P
Sbjct: 1   MVMAENEAGGEDPKELSGGHKSPWKRPLGGDAKGGDGPVMGA-ESWPALSDAQRPKNPGP 59

Query: 58  KTNPAVV-------------DSSFKLSSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKSG 104
              P V+                       QG+V Q K+HGSGN NPSHK LP+R+ K G
Sbjct: 60  AAKPPVLAGVRPAPPVVGGGAPPPPQPPVVQGSVGQQKSHGSGNPNPSHKHLPLRHQKPG 119

Query: 105 SKRNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAE------ 158
           SKRN N  PPFPVPL YH P  MPPVFH+M+ P H  V GYAYPP  GP P  +      
Sbjct: 120 SKRNTNGGPPFPVPLPYHQP-PMPPVFHSMIVP-HIPVSGYAYPPVTGPLPSVDPHLVKS 177

Query: 159 -NQTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQR 217
            ++T +QAFVPPVH ID+ R+VQPPP RGDPNA + NFPNRRP+ QEPGGH N AWH QR
Sbjct: 178 GSETSMQAFVPPVHGIDSNRSVQPPP-RGDPNAYIVNFPNRRPSLQEPGGHFNPAWHPQR 236

Query: 218 AFGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPG-AALCYVPVVPPGSIRGPH 276
             G RD + + Q +G R  +RP FFGPAPG  +MVGP FPG A+L Y P  P GSIRGPH
Sbjct: 237 PLGFRDGIQMQQGMGARAFIRPPFFGPAPG--FMVGPAFPGPASLYYHPPAPTGSIRGPH 294

Query: 277 PQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAI 336
           P RF P  ++ GAP+ P ET AL+ANIVKQIEYYFSD NLQNDHYLISLMD QGWVPI+I
Sbjct: 295 P-RFIPPSLSPGAPIPPSETQALRANIVKQIEYYFSDGNLQNDHYLISLMDDQGWVPISI 353

Query: 337 IADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQ 396
           IADFKRVK+MSTDL FILDALQ+S+TVE Q D++RRRDEWS+WIPAS+E  +   A + Q
Sbjct: 354 IADFKRVKKMSTDLQFILDALQSSTTVEVQCDRIRRRDEWSRWIPASIEHGLPLKANSPQ 413

Query: 397 SQSAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHC 456
            +  E  V    N + NKDN     + N    SN GNL+ N P   D++E+   +  EH 
Sbjct: 414 DRVVEKTVIDHENNESNKDNTTGTSEGNCELQSNNGNLVLNSPSDGDTLEVSHCSNAEHN 473

Query: 457 DEFLLLDDGKPAFSAENGDSRTSLS-ESDMKFSNLGTNHNISSEDLSQRTESARFGDYGT 515
            E +  DDG  +    +GDS   L+ ESD +FS++ T +N    D  Q TE+     + +
Sbjct: 474 SEKVRFDDGAQSLIGGDGDSSDGLNFESDARFSDVSTGYN-PCLDFVQETEATTVVGHES 532

Query: 516 QGLERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR 563
           +  E SS  AV    +LSNDFA+ FMLDEELE E KT KK DLS+ +R
Sbjct: 533 ESTEVSSFFAVG---DLSNDFASPFMLDEELEPEPKTSKKVDLSSTRR 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557168|ref|XP_002519615.1| lupus la ribonucleoprotein, putative [Ricinus communis] gi|223541205|gb|EEF42760.1| lupus la ribonucleoprotein, putative [Ricinus communis]

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/576 (51%), Positives = 370/576 (64%), Gaps = 49/576 (8%)

Query: 3   MAENEGGDEQKEMVSGPKHVWNKNVVTSTGNDAPVMGASDSWPALSDAQTHHQRPKTNPA 62
           MAE+EGGD+QKE+ SG K  W   +V     D PVM A +SWPALSDAQ   Q P++  A
Sbjct: 1   MAESEGGDDQKEVNSGVKSPWKTPLVA----DGPVMSA-ESWPALSDAQ---QLPRSKSA 52

Query: 63  VVDSSFKLSSDP------QGAVAQHKTHGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPFP 116
             DS+ K +  P      Q +  Q K+HG GN N SHK    R+ +SGSKRNPN APPFP
Sbjct: 53  --DSATKPTVPPAPPSMNQESAGQQKSHGYGNPNSSHKYSSSRHQRSGSKRNPNGAPPFP 110

Query: 117 VPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAE--------NQTPVQAFVP 168
           VP  Y  P A+PPVFH MVPPPH  VPGYAY P P PFP  E        + + VQ+F  
Sbjct: 111 VPFPYQQP-ALPPVFHAMVPPPHITVPGYAYQPGPAPFPSVEAHLVKSVSDSSTVQSFAQ 169

Query: 169 PVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVP 228
           PV       NVQPPP RGDPNA   NF +RRP+ QEPG H+NHAWHH R+F PRD++   
Sbjct: 170 PV-------NVQPPP-RGDPNAYAVNF-SRRPSVQEPGSHLNHAWHH-RSFSPRDNIAFQ 219

Query: 229 QSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSG 288
           Q +G RPLVRP +F  APG  +MVGP FPG  +CY PV PPGS RG HP  F PYP + G
Sbjct: 220 QGMGSRPLVRPPYFTTAPG--FMVGPTFPGPPICYFPVAPPGSFRGGHPAVFMPYPTSPG 277

Query: 289 APMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMST 348
           AP +PP+  +L+ +I++QIEYYFSDENL+ DH+LISLMD QGWVPI+ IA FKRVK+M+T
Sbjct: 278 AP-IPPQESSLRDDIIRQIEYYFSDENLRTDHFLISLMDDQGWVPISAIAKFKRVKKMTT 336

Query: 349 DLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQSAENPVDSIG 408
           D+  ILDALQ+SST+E QGDK+RRRDEWSKWI AS+E T+ S  QTS+SQ  E       
Sbjct: 337 DVVIILDALQSSSTIEVQGDKIRRRDEWSKWIAASIEHTLPSQTQTSESQPVE------- 389

Query: 409 NGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPA 468
               N+ N R  P+EN   S N G L++N  P+ D+ EI      E     +LL+ GK A
Sbjct: 390 --PANEGNARATPEENGSSSINAG-LVKNNLPNGDASEIINTGKMEGSSASVLLNAGKQA 446

Query: 469 FSAENGD-SRTSLSESDMKFSNLGTNHNISSEDLSQRTESARFGDYGTQGLERSSTVAVQ 527
            S  N D S   +++ + K S+LG+++       ++  E A     GT   E SS +   
Sbjct: 447 MSDVNRDTSGECVTDLNSKLSDLGSSYGAPYLGHAKEFEPAVSNYNGTDCFEFSSDMTSI 506

Query: 528 NLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR 563
           N+ EL+NDFANTFMLDEELE+E K  K D +S+ +R
Sbjct: 507 NVGELANDFANTFMLDEELELEHKIQKNDSVSSIRR 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809815|emb|CAN73529.1| hypothetical protein VITISV_006639 [Vitis vinifera]

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 280/498 (56%), Positives = 339/498 (68%), Gaps = 19/498 (3%)

Query: 75  QGAVAQHKTHGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPFPVPLSYHHPSAMPPVFHTM 134
           +G+V Q K+HGSGN NPSHK LP+R+ K GSKRN N  PPFPVPL YH P  MPPVFH+M
Sbjct: 167 KGSVGQQKSHGSGNPNPSHKHLPLRHQKPGSKRNTNGGPPFPVPLPYHQP-PMPPVFHSM 225

Query: 135 VPPPHFAVPGYAYPPYPGPFPGAE-------NQTPVQAFVPPVHAIDAARNVQPPPPRGD 187
           + P H  V GYAYPP  GP P  +       ++T +QAFVPPVH ID+ R+VQPPP RGD
Sbjct: 226 IVP-HIPVSGYAYPPVTGPLPSVDPHLVKSGSETSMQAFVPPVHGIDSNRSVQPPP-RGD 283

Query: 188 PNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRPLVRPAFFGPAPG 247
           PNA + NF NRRP+ QEPGGH N AWH QR  G RD + + Q +G R  +RP FFGPAPG
Sbjct: 284 PNAYIVNFSNRRPSLQEPGGHFNPAWHPQRPLGFRDGIQMQQGMGARAFIRPPFFGPAPG 343

Query: 248 PGYMVGPGFPG-AALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQ 306
             +MVGP FPG A+L Y P  P GSIRGPHP RF P  ++ GAP+ P ET AL+ANIVKQ
Sbjct: 344 --FMVGPAFPGPASLYYHPPAPTGSIRGPHP-RFIPPSLSPGAPIPPSETQALRANIVKQ 400

Query: 307 IEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQ 366
           IEYYFSD NLQNDHYLISLMD QGWVPI+IIADFKRVK+MSTDL FILDALQ+S+TVE Q
Sbjct: 401 IEYYFSDGNLQNDHYLISLMDDQGWVPISIIADFKRVKKMSTDLQFILDALQSSTTVEVQ 460

Query: 367 GDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQSAENPVDSIGNGDINKDNKREMPKENVG 426
            D++RRRDEWS+WIPAS+E  +   A + Q +  E  V    N + NKDN     + N  
Sbjct: 461 CDRIRRRDEWSRWIPASIEHGLPLKANSPQDRVVEKTVIDHENNESNKDNTTGTSEGNCE 520

Query: 427 FSSNTGNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPAFSAENGDSRTSLS-ESDM 485
             SN GNL+ N P   D++E+   +  EH  E +  DDG  +    +GDS   L+ ESD 
Sbjct: 521 LQSNNGNLVLNSPSDGDTLEVSHCSNAEHNSEKVRFDDGAQSLIGGDGDSSDGLNFESDA 580

Query: 486 KFSNLGTNHNISSEDLSQRTESARFGDYGTQGLERSSTVAVQNLIELSNDFANTFMLDEE 545
           +FS++ T +N    D  Q TE+     + ++  E SS  AV    +LSNDFA+ FMLDEE
Sbjct: 581 RFSDVSTGYN-PCLDFVQETEATTVVGHESESTEVSSFFAVG---DLSNDFASPFMLDEE 636

Query: 546 LEIEQKTMKKDDLSAHKR 563
           LE E KT KK DLS+ +R
Sbjct: 637 LEPEPKTSKKVDLSSTRR 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104601|ref|XP_002313496.1| predicted protein [Populus trichocarpa] gi|222849904|gb|EEE87451.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 298/586 (50%), Positives = 365/586 (62%), Gaps = 77/586 (13%)

Query: 1   MVMAENEGGDEQKEMVS-GPKHVWNKNVVTSTGNDAPVMGASDSWPALSDA--------- 50
           MVMAENE  D+QK   + GPK  W   VV     DAPVMGA++ WPALSDA         
Sbjct: 1   MVMAENESADDQKSSSTVGPKSPWKSPVVA----DAPVMGAAEFWPALSDAQQQQQQHRS 56

Query: 51  ---QTHHQRPKTNPAVV----DSSFKLSSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKS 103
               +  + P   P +V    D +   ++ P+G+  QHK+HGSG SN S+K    R+ KS
Sbjct: 57  KLTDSASKTPPQPPLMVAGGGDKAAPPAASPRGSAGQHKSHGSGYSNTSNKHSSSRHQKS 116

Query: 104 GSKRNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFP-------- 155
           GSKRNPN A PF VP  Y  P AM PVF  M PPPH AV GY Y P P PFP        
Sbjct: 117 GSKRNPNGAHPFSVPFPYQQP-AMSPVFPAMAPPPHIAVSGYPYQPGPPPFPTVETHLMK 175

Query: 156 -GAENQTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWH 214
            G+E   P+Q F P +       NVQPPP RGDPNA   NFPNRRPN Q+  GH+N  WH
Sbjct: 176 SGSETGPPMQPFAPSI-------NVQPPP-RGDPNAYAVNFPNRRPNMQDSSGHLNPTWH 227

Query: 215 HQRAFGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAA-LCYVPVVPPGSIR 273
           HQRAFG RD++P+ Q +GPRPLVRP FF  A  PGYMVGP FPG   +CYV V PPGS+R
Sbjct: 228 HQRAFGSRDNIPLQQVMGPRPLVRPPFF--AAPPGYMVGPTFPGPPPICYVSVAPPGSLR 285

Query: 274 GPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVP 333
           GP P  F PYP+NSGAP+LP ETLAL+A+I  QIEYYFSDENLQNDHYLISLMD QGWVP
Sbjct: 286 GPQPSCFVPYPINSGAPVLPQETLALRASIAGQIEYYFSDENLQNDHYLISLMDDQGWVP 345

Query: 334 IAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQ 393
           ++ IA+FKRVK+M+ D+ FILDALQ S ++E QGDKVR+RD+WSKWIPAS +Q +S  AQ
Sbjct: 346 VSTIAEFKRVKKMTLDISFILDALQCSGSIEVQGDKVRKRDDWSKWIPASSQQAVSPKAQ 405

Query: 394 TSQSQSAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGE 453
           TS+ Q+ EN           +D+   + K + GF+S+T     N   + D+ ++E D   
Sbjct: 406 TSEGQAGEN---------AEEDDTISVSKGSAGFASHTTVKAVNKLSNGDAGKMEVDG-- 454

Query: 454 EHCDEFLLLDDGKPAFSAENGDSRTSLSESDMKFSNLGTNHNISSEDLSQRTESARFGDY 513
               + +L   GKP                    S LG  H+    D +Q T    F  +
Sbjct: 455 ----KSILFKAGKPGCDGN---------------SELGACHSTPHLDRAQGTGPPTFNYH 495

Query: 514 GTQGLERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLS 559
           GT+G+E +     QNL +LS+DFANTFMLDEELE+EQKT+K D+ S
Sbjct: 496 GTEGMEDA-----QNLADLSSDFANTFMLDEELELEQKTLKNDECS 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554253|ref|XP_003545463.1| PREDICTED: la-related protein 1-like [Glycine max]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 284/577 (49%), Positives = 360/577 (62%), Gaps = 49/577 (8%)

Query: 1   MVMAENEGGDEQKEMVSGPKHVWNKNVVTSTGNDAPVMGASDSWPALSDAQTHHQRPKTN 60
           MV+AENE G++QKE +  PK  W    V   G D  VM  ++SWP LSDAQ    RP  N
Sbjct: 1   MVIAENEIGEDQKE-IGAPKSPWKTPTVDGKGGDVSVMMGTESWPRLSDAQ----RPPKN 55

Query: 61  PAVVDSSFKLSSDPQGAVA-----QHKTHGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPF 115
             +  ++   S    G +A       K +G+GN NP HK    R+ K G+KRN N  PPF
Sbjct: 56  --LETAAAAASVTSAGEIAPRPPSMQKVNGAGNVNPVHKLPLSRHQKPGAKRNSNGGPPF 113

Query: 116 PVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAEN-------QTPVQAFVP 168
           PVP+ YH P  +PP FH MVPPPH AVPGYA+P  PGPFPGAEN       Q P QAF P
Sbjct: 114 PVPIPYHQP--VPPFFHPMVPPPHVAVPGYAFPLGPGPFPGAENPLVKPVSQAPGQAFAP 171

Query: 169 PVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVP 228
           P HA+D  +NVQP   RGDPNA V NF N R N QE G H+NHAWHHQR F  R ++P+ 
Sbjct: 172 PAHAVDG-KNVQPLV-RGDPNAYVGNFSNGRTNIQEQGDHLNHAWHHQRPFPSRVNIPMQ 229

Query: 229 QSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAA-LCYVPVVPPGSIRGPHPQRFFPYPVNS 287
           Q +GPRP +RP      P PGYMVGP FPG A +  VP+ PPGSIRGPHP+ F PYPVN 
Sbjct: 230 QGLGPRPFIRPP--FYGPPPGYMVGPSFPGPAPVWCVPMPPPGSIRGPHPRHFVPYPVNP 287

Query: 288 GAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMS 347
                PPET++L+ +IVKQI+YYFSDENLQNDHYLISLMD QGWVPI+ +ADFKRVK+MS
Sbjct: 288 TPQPPPPETVSLRTSIVKQIDYYFSDENLQNDHYLISLMDDQGWVPISTVADFKRVKKMS 347

Query: 348 TDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQSAENPVDSI 407
           TD+PFILDALQ+S+TVE QGDK+R+RD WSKWI AS   + SSTAQ  Q Q  +   +S+
Sbjct: 348 TDIPFILDALQSSNTVEVQGDKIRQRDSWSKWIGASSGNSGSSTAQVQQGQLVDGAFNSL 407

Query: 408 GNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKP 467
            N D   D  +E+ +EN   + +     E+  P+ D +++   N E++ +          
Sbjct: 408 ENSDAVGDKMKEISEENPKDAVHDSIFEEHNQPNRDMLQVSLMNQEKNNE---------- 457

Query: 468 AFSAENGDSRTSLSESDMKFSNL-GTNHNISSEDLSQRTESARFGDYGTQGLERSSTVAV 526
                 G      S   +KF +   TN+N+ S+   Q  E   F +     ++  + + V
Sbjct: 458 ------GHRSNDKSHEGVKFCDFETTNNNLCSQ---QEVEPKVFDNNEAGNMDVLTEMDV 508

Query: 527 QNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR 563
           +   +LSNDF NTFMLDEE+E+EQK ++K +LS+  R
Sbjct: 509 R---DLSNDFGNTFMLDEEIELEQKMLRKTELSSSGR 542

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499283|ref|XP_003518471.1| PREDICTED: la-related protein 1-like [Glycine max]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 282/575 (49%), Positives = 362/575 (62%), Gaps = 44/575 (7%)

Query: 1   MVMAENEGGDEQKEMVSGPKHVWNK--NVVTSTGNDAPVMGASDSWPALSDAQTHHQRPK 58
           M+ A+NE  ++QKE +  PK  W     V    G D  VM  ++SWP LSDAQ   +  +
Sbjct: 1   MLTADNEIDEDQKE-IGAPKSPWKTPTTVDGKGGGDVSVMMGTESWPRLSDAQRPLKNLE 59

Query: 59  TNPAVVDSSFKLSSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPFPVP 118
           T  A V S+ +++S P    +  K +G+GN NP HK    R+ K G+KRN N APPFP+P
Sbjct: 60  TAAASVSSAGEIASRPS---SMQKVNGAGNVNPMHKLPSSRHQKPGAKRNSNGAPPFPIP 116

Query: 119 LSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAENQ-------TPVQAFVPPVH 171
           + YH P  +PP FH MVPPPH AVPGYA+PP PGPFPG EN         P QAF PP H
Sbjct: 117 IHYHQP--VPPFFHPMVPPPHIAVPGYAFPPGPGPFPGVENPLAKPVSPAPGQAFAPPAH 174

Query: 172 AIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSI 231
           A+D  +NVQPP  +GDPNA V NF N RPN QE G H+NHAWHHQR F  R ++P+ Q +
Sbjct: 175 AVDG-KNVQPPV-QGDPNAYVGNFSNGRPNIQEQGDHLNHAWHHQRPFPSRANIPMQQGL 232

Query: 232 GPRPLVRPAFFGPAPGPGYMVGPGFPGAA-LCYVPVVPPGSIRGPHPQRFFPYPVNSGAP 290
           GPRP +RP      P PGYMVGP FPG A +  VP+ PPGSIRGPHP+ F PYPVN    
Sbjct: 233 GPRPFIRPP--FYGPPPGYMVGPSFPGPAPVWCVPMPPPGSIRGPHPRHFVPYPVNPTPQ 290

Query: 291 MLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDL 350
            LPPET+ L+ +IVKQI+YYFSDENLQNDHYLISLMD QGWVPI+ +ADFKRVK+MSTD+
Sbjct: 291 PLPPETVPLRTSIVKQIDYYFSDENLQNDHYLISLMDDQGWVPISTVADFKRVKKMSTDI 350

Query: 351 PFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQSAENPVDSIGNG 410
            FILDALQ+S+TVE +GDK+R+ + WSKWI  S   + SST Q  Q +  +  V+S+ N 
Sbjct: 351 AFILDALQSSNTVEVEGDKIRKHNSWSKWIRISSGNSESSTDQIQQGELVDGAVNSLENS 410

Query: 411 DINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPAFS 470
           D   D  +E  +EN   + +   L E+  P+ D ++I              +D  K   S
Sbjct: 411 DAVGDKTKETSEENDKDAVHDSILAEHNQPNKDMLQIS------------YMDQEKNTES 458

Query: 471 AENGDSRTSLSESDMKFSNLGT-NHNISSEDLSQRTESARFGDYGTQGLERSSTVAVQNL 529
             + D     S   +KF +  T N+N+ S+   Q TE   F +     ++  + + V+  
Sbjct: 459 HHSNDK----SHEGVKFCDFDTANNNLCSQ---QETEPKIFDNNEAGNMDVLNEMDVR-- 509

Query: 530 IELSNDFANTFMLDEELEIEQKTM-KKDDLSAHKR 563
            +LSNDFANTFMLDEE+E+EQK + KK +LS+  R
Sbjct: 510 -DLSNDFANTFMLDEEIELEQKMLIKKTELSSSGR 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059244|ref|XP_002299786.1| predicted protein [Populus trichocarpa] gi|222847044|gb|EEE84591.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 279/612 (45%), Positives = 357/612 (58%), Gaps = 104/612 (16%)

Query: 3   MAENEGGDEQK-EMVSGPKHVWNKNVVTSTGNDAPVMGASDSWPALSDAQTHHQR----- 56
           MAENE GD+QK   + GPK  W   VV     DAPVMG ++SWPALSDAQ   Q+     
Sbjct: 1   MAENERGDDQKGSSMVGPKSPWKTPVVA----DAPVMGTAESWPALSDAQQQQQQQQRSK 56

Query: 57  -------------------------PKTNPAVVDSSFKLSS---------DPQGAVAQHK 82
                                    P+ +P   ++   +S+           +G   Q +
Sbjct: 57  LTDSASKPPPPPTVTVASGGDTAAPPEASPRCAENGLLMSTLQSGILDAVTVEGLSGQQR 116

Query: 83  THGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAV 142
           +HGSGN+  S+K  P R+ KSGSKRNPN APPFP P  Y  P  +PPV+  +VPPPH AV
Sbjct: 117 SHGSGNTISSNKHSPSRHQKSGSKRNPNGAPPFPAPFPYQQPH-IPPVYPAIVPPPHIAV 175

Query: 143 PGYAYPPYPGPFPGAENQTPVQAFVPPVHAIDAARNVQP-----------PPPRGDPNAS 191
            G+AY P P PFP  EN           H + +  +  P           PPPRGDPNA 
Sbjct: 176 SGFAYQPGPPPFPPVEN-----------HLVKSGSDASPMQPFVPPVNVQPPPRGDPNAY 224

Query: 192 VANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYM 251
             NFPNRR N QE GGH+N  WHHQRAFGPRD++ + Q +GPR L+RP FF  A  PG+M
Sbjct: 225 AVNFPNRRLNGQESGGHLNQLWHHQRAFGPRDNIVLQQGMGPRHLIRPPFF--ASPPGFM 282

Query: 252 VGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYF 311
           VGP +PG  +CY+PV  PGS+RGPHP RF PYP+N GAPMLP E   L+A+I++QIEYYF
Sbjct: 283 VGPTYPGPPICYIPVASPGSLRGPHPPRFVPYPINPGAPMLPQEIQTLRASIIRQIEYYF 342

Query: 312 SDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVR 371
           SDENL NDHYLISLMD QGWVPI+ IA+FKRVK+M+TD+  ILDALQ+S ++E QG+K+R
Sbjct: 343 SDENLLNDHYLISLMDDQGWVPISTIAEFKRVKKMTTDISLILDALQSSGSIEVQGEKIR 402

Query: 372 RRDEWSKWIPASVEQTMSSTAQTSQSQSAENPVDSIGNGDINKDNKREMPKENVGFSSNT 431
           +RD WSKWIPAS +Q MS  AQTS+ Q  +N           +D+   + KE+  FS  T
Sbjct: 403 KRDYWSKWIPASSQQAMSLKAQTSEGQPGKN---------AEEDSTSGLSKESAEFSPCT 453

Query: 432 GNLMENVPPSFDSVEIEPDNGEEHCDEFLLLDDGKPAFSAENGDSRTSLSESDMKFSNLG 491
                    + D  ++E D      ++ +L   GKP F   +GD            S+LG
Sbjct: 454 TVKEAKKLSNGDIGKLEGD------EKSVLFKAGKPGF---DGD------------SDLG 492

Query: 492 TNHNISSEDLSQRTESARFGDYGTQGLERSSTVAVQNLIELSNDFANTFMLDEELEIEQK 551
             +     D +Q         + T+G+E +     QNL + SNDFANTFMLDEELE+EQK
Sbjct: 493 ACYTTPYPDNTQGFRPLALNYHVTEGMEDA-----QNLADFSNDFANTFMLDEELELEQK 547

Query: 552 TMKKDDLSAHKR 563
           ++K +  S  +R
Sbjct: 548 SLKNEGCSPVRR 559

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083998|emb|CBI24386.3| unnamed protein product [Vitis vinifera]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 274/585 (46%), Positives = 346/585 (59%), Gaps = 67/585 (11%)

Query: 3   MAENE-GGDEQKEMVSGPKHVWNKNVV-TSTGNDAPVMGASDSWPALSDAQT-HHQRPKT 59
           MAENE GG++ KE+  G K  W + +   + G D PVMGA +SWPALSDAQ   +  P  
Sbjct: 1   MAENEAGGEDPKELSGGHKSPWKRPLGGDAKGGDGPVMGA-ESWPALSDAQRPKNPGPAA 59

Query: 60  NPAVV-------------DSSFKLSSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKSGSK 106
            P V+                       QG+V Q K+HGSGN NPSHK LP+R+ K GSK
Sbjct: 60  KPPVLAGVRPAPPVVGGGAPPPPQPPVVQGSVGQQKSHGSGNPNPSHKHLPLRHQKPGSK 119

Query: 107 RNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAE-------N 159
           RN N  PPFPVPL YH P  MPPVFH+M+ P H  V GYAYPP  GP P  +       +
Sbjct: 120 RNTNGGPPFPVPLPYHQP-PMPPVFHSMIVP-HIPVSGYAYPPVTGPLPSVDPHLVKSGS 177

Query: 160 QTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAF 219
           +T +QAFVPPVH ID+ R+VQPPP RGDPNA + NFPNRRP+ QEPGGH N AWH QR  
Sbjct: 178 ETSMQAFVPPVHGIDSNRSVQPPP-RGDPNAYIVNFPNRRPSLQEPGGHFNPAWHPQRPL 236

Query: 220 GPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPG-AALCYVPVVPPGSIRGPHPQ 278
           G RD + + Q +G R  +RP FFGPAPG  +MVGP FPG A+L Y P  P GSIRGPHP 
Sbjct: 237 GFRDGIQMQQGMGARAFIRPPFFGPAPG--FMVGPAFPGPASLYYHPPAPTGSIRGPHP- 293

Query: 279 RFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIA 338
           RF P  ++ GAP+ P ET AL+ANIVKQIEYYFSD NLQNDHYLISLMD QGWVPI+IIA
Sbjct: 294 RFIPPSLSPGAPIPPSETQALRANIVKQIEYYFSDGNLQNDHYLISLMDDQGWVPISIIA 353

Query: 339 DFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQ 398
           DFKRVK+MSTDL FILDALQ+S+TVE Q D++RRRDEWS+WIPAS+E  +          
Sbjct: 354 DFKRVKKMSTDLQFILDALQSSTTVEVQCDRIRRRDEWSRWIPASIEHGL---------- 403

Query: 399 SAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDE 458
               P+ +  +GD +         + + F S+           F  V    D   +    
Sbjct: 404 ----PLKANRDGDSS---------DGLNFESDA---------RFSDVSTVGDLSNDFASP 441

Query: 459 FLLLDDGKPAFSAENGDSRTSLSESDMKFSNLGTNHNISSEDLSQRTESARFGDYGTQGL 518
           F+L ++ +P          +S    D +   +  N +     L   T+++R G+    G 
Sbjct: 442 FMLDEELEPEPKTSKKVDLSSTRRIDDEDEEMVVN-DQDVHRLVIVTQNSRTGEGSGNGA 500

Query: 519 ERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR 563
           + S +++   L    ND    F  ++EL+ +    +K+  S   R
Sbjct: 501 QESKSIS-NELASAIND--GLFFYEQELKTKGSNCRKNSFSFENR 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493683|ref|XP_003617130.1| La-related protein [Medicago truncatula] gi|355518465|gb|AET00089.1| La-related protein [Medicago truncatula]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 257/585 (43%), Positives = 330/585 (56%), Gaps = 59/585 (10%)

Query: 1   MVMAENEGGDEQKEMVSGPKHVWNKNVVTSTGNDAPVMG-ASDSWPALSDAQTHHQRPKT 59
           MV+A+NE  ++QKEM + PK  W +  V     D PV+   + SWPALSDAQT   +PK 
Sbjct: 1   MVIADNEVVEDQKEM-NAPKSPWKRPSVDGKSVDVPVLVVGTKSWPALSDAQT--PKPKN 57

Query: 60  ---NPAVVDSSFKLSSDPQGAVA-----QHKTHGSGNSNPSHKSLPVRNHKSGSKRN--P 109
              N +       +S    G VA       K++GSGN NP +K    R  K G KRN   
Sbjct: 58  HVENVSAKGEDVAVSVPSVGQVAPRAPSVQKSNGSGNFNPMNKMPTPRYQKPGPKRNSNT 117

Query: 110 NAAPPFPVP-LSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAEN--QTPV--- 163
           N AP FPV  + YH    + P FH M PPPH A+P YA+PP  GP+P  EN    PV   
Sbjct: 118 NGAPHFPVATMPYHQQPPVAPYFHPMAPPPHIAIPAYAFPPGSGPYPNGENPLVKPVSPA 177

Query: 164 ---QAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFG 220
              Q F  P HA+DA ++VQPP  +GDPNA   N+PN RPN QE G H+NH WHHQR F 
Sbjct: 178 AAGQGFTSPAHAVDA-KHVQPPV-QGDPNAYAVNYPNGRPNIQEQGDHVNHGWHHQRPFP 235

Query: 221 PRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAA-LCYVPVVPPGSIRGPHPQR 279
            R ++P+   +GPRP +RP      P PGYMVGP FPG A +  VP+ PPGSIRGP P+ 
Sbjct: 236 ARANMPMQHGMGPRPFIRPP--FYGPPPGYMVGPSFPGHAPIWCVPMPPPGSIRGPPPRH 293

Query: 280 FFPYPVNSGAPMLP-PETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIA 338
           F PYP  + AP  P PET +L+A+I+KQIEYYFSDENL ND YLI LMD QGWVPI+ +A
Sbjct: 294 FAPYPPVNSAPQSPTPETQSLRASILKQIEYYFSDENLHNDRYLIGLMDDQGWVPISTVA 353

Query: 339 DFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQ 398
           DFKRVKRMSTD+PFI+D LQNS  VE Q DK+R+R+ WSKWI  S   + SS AQ  Q Q
Sbjct: 354 DFKRVKRMSTDIPFIVDVLQNSDNVEVQDDKIRKRNNWSKWIQTSSGNSGSSVAQVQQDQ 413

Query: 399 SAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDE 458
             E+  +S  N D   D  +E  +  +  S++     E    + D+ E+   N ++    
Sbjct: 414 HVESTANSCQNSDTVVDKTKESSEATLNDSAHDSTSTEQNQSNKDTFEVSDVNQKQDT-- 471

Query: 459 FLLLDDGKPAFSAENGDSRTSLSESDMKFSNLGTNHNISSEDLSQRTESARFGDYGTQGL 518
                         N     ++S + M   N  T  N        +T+   + + G    
Sbjct: 472 --------------NSHPSKNISHAVMN-KNATTRINFYCRPQETKTKIVDYNETG---- 512

Query: 519 ERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR 563
                    N+   ++DF NTF+LDEE+E+EQK  KK +LS+  R
Sbjct: 513 ---------NMDVSADDFGNTFLLDEEIELEQKMPKKTELSSTGR 548

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463867|ref|XP_004149652.1| PREDICTED: la-related protein 1-like [Cucumis sativus]

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 265/586 (45%), Positives = 321/586 (54%), Gaps = 102/586 (17%)

Query: 1   MVMAENEGGDEQKEMVSGPKHVWNK-NVVTSTGNDAPVMGASDSWPALSDAQTHHQRPKT 59
           MVM + E  D+ K+  +G K  W     V +   DAPVMGA DSWPAL+DAQ    RPK+
Sbjct: 1   MVMVDTEVTDDNKD-TNGRKSPWKTPAAVDAKDTDAPVMGA-DSWPALADAQ----RPKS 54

Query: 60  NPA-----------VVDSSFKL---SSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKSGS 105
             A           V D    L   SS  QG  AQ K+  S NS+ SHK+    + K GS
Sbjct: 55  IDATTSAKSSDSGEVSDGVAALQSPSSGAQGGYAQ-KSPASRNSSYSHKNFQSHHQKPGS 113

Query: 106 KRNPNAAPPFPVPLSYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAE------- 158
           KRNPN AP   VPL YH P   P     ++ PPH AVPGYAY P P    G E       
Sbjct: 114 KRNPNGAPHVSVPLPYHQPPMPPLF-PPILHPPHLAVPGYAYQPRP--VAGVEVHMIKPG 170

Query: 159 NQTPVQAFVPPVHAIDAARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRA 218
           N+T VQAFVPPV           PPPRGDP+  V    NRRPN QE G H NH WHHQR 
Sbjct: 171 NETSVQAFVPPVE----------PPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRG 220

Query: 219 FGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMVGPGFPGAALCYVPVVPPGSIRGPHPQ 278
           F PRD++ +    GPRP +RP FF PAPG  +MVGP FPG    Y   VPP    G  PQ
Sbjct: 221 FNPRDNMSMQHGAGPRPFIRPPFFSPAPG--FMVGPSFPGHGPMYYVPVPPPDAIG-RPQ 277

Query: 279 RFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIA 338
            F P+P+N  A MLPP+ LAL+ NI+KQIEYYFSDENL+ DHYLISLMD  GWVPI+ IA
Sbjct: 278 -FIPHPINPRASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIA 336

Query: 339 DFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKWIPASVEQTMSSTAQTSQSQ 398
           +FKRVK+MSTD+ FILD+L +S+ VE QGDKVR+RDEWSKW+P S +   +   +TS   
Sbjct: 337 EFKRVKKMSTDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSI- 395

Query: 399 SAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEEHCDE 458
               PVD   N  ++         EN    S      +N+  S                 
Sbjct: 396 ----PVDESTNSLVD---------ENASDGSRVLASNDNIKSS----------------- 425

Query: 459 FLLLDDGKPAFSAENGDSRTSLSESDM-KFSNLGTNHNISSEDLSQRTESARFGDYGTQG 517
            LL            G SR   S  D  + +NL      SS            G    QG
Sbjct: 426 -LL-----------QGCSREQFSSRDSPEVANLDIVEEHSS------------GTVPPQG 461

Query: 518 LERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAHKR 563
           ++ SS V   ++ +LS+ F++TFMLDEELEIEQK +KKDDL+++ R
Sbjct: 462 IKISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGR 507

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
TAIR|locus:2125334	523	LARP1c "La related protein 1c"	0.440	0.474	0.286	4.8e-23
TAIR|locus:2156912	453	LARP1b "AT5G66100" [Arabidopsi	0.298	0.370	0.326	5.9e-20
UNIPROTKB|G3V0E9	358	LARP1B "La-related protein 1B"	0.175	0.276	0.46	2.4e-15
UNIPROTKB|G3XAJ5	522	LARP1B "La-related protein 1B"	0.175	0.189	0.46	8.8e-15
UNIPROTKB|Q659C4	914	LARP1B "La-related protein 1B"	0.175	0.108	0.46	2.4e-14
WB|WBGene00020097	1150	larp-1 [Caenorhabditis elegans	0.159	0.078	0.4	1.2e-12
RGD|1306683	1024	Larp1 "La ribonucleoprotein do	0.143	0.079	0.506	1.7e-12
MGI|MGI:1890165	1072	Larp1 "La ribonucleoprotein do	0.143	0.075	0.506	1.8e-12
POMBASE|SPAC1527.03	475	SPAC1527.03 "RNA-binding prote	0.188	0.223	0.384	2.8e-12
UNIPROTKB|Q6PKG0	1096	LARP1 "La-related protein 1" [	0.154	0.079	0.488	5.9e-12

TAIR|locus:2125334 LARP1c "La related protein 1c" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
 Identities = 78/272 (28%), Positives = 119/272 (43%)

Query:   186 GDPNASVAN-FPNRRPNT-QEPGG-----HMNHAWHHQRAFGPRDSVPVPQSIGPRPLVR 238
             G  N S  + + N+  N  Q  GG     H N  W  QR+F  R+     Q  G    VR
Sbjct:   253 GTENPSQRDSYRNQNGNHHQSHGGRRNQEHGNQNWTFQRSFNGREGNAQSQR-GTPAFVR 311

Query:   239 XXXXXXXXXXXYMVGPGFPGAALCYVPVVPPGSIRGPHPQRFFPYPVNSGAPMLPP-ETL 297
                        +M    FP     ++P     +    +P+  +  P+  G       +  
Sbjct:   312 HPSPTVQPIPQFMAAQPFPS----HIPFPTELAQSSYYPRMPYMTPIPHGPQFFYHYQDP 367

Query:   298 ALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDAL 357
              L   + KQI+YYFSDENL  D YL   M+ +G+VP+ ++A FK+V  ++ ++  I++AL
Sbjct:   368 PLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEAL 427

Query:   358 QNSSTVEAQGDKVRRRDEWSKWI---------PASVEXXXXXXXXXXXXXXXENPVDSIG 408
             QNS  VE QGD +R+RD W  W+         P SV+               ++  D IG
Sbjct:   428 QNSPHVEVQGDFIRKRDNWQNWVLRRNPTGSGPQSVDRADAVAKRLGNLSVDQSSADPIG 487

Query:   409 NGDINKDNKREMPKENVGFSSNTGNLME-NVP 439
              G  ++    E   ++   SS+T  +   N P
Sbjct:   488 -GSSSQLQPTEALSDDQQQSSSTAPVSNHNAP 518

GO:0009507 "chloroplast" evidence=ISM

GO:0048523 "negative regulation of cellular process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2156912 LARP1b "AT5G66100" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
 Identities = 60/184 (32%), Positives = 91/184 (49%)

Query:   208 HMNHAWHHQRAFGPRDSVPVPQ-SIGP-RP-LVRXXXXXXXXXXXYMVGP--GFPGAALC 262
             H N +    R +  RD    PQ  +G  RP ++            YM  P  G  G  + 
Sbjct:   238 HGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPII 297

Query:   263 YVPVVPPGSIRGPHPQRFFPYPVNSGAPM-LPPETL----ALKAN-IVKQIEYYFSDENL 316
             Y        +  PHP    P P+    P  L P       A+  N I+ Q+EYYFS +NL
Sbjct:   298 YPDYAQ--HVFMPHPS---PDPMGLVGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNL 352

Query:   317 QNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEW 376
               D +L   M+ +GWVP+ +IA F+R+  ++ ++  IL+AL++S  VE QG+ +RRR +W
Sbjct:   353 SRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQGETLRRRGDW 412

Query:   377 SKWI 380
              K++
Sbjct:   413 DKYL 416

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010150 "leaf senescence" evidence=IMP

UNIPROTKB|G3V0E9 LARP1B "La-related protein 1B" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query:   283 YPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKR 342
             Y   +G  + P E   LK  I +QIEYYFS ENL+ D +L   MD QG++PI++IA F+R
Sbjct:   199 YDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQR 258

Query:   343 VKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKW-IP 381
             V+ ++T+L  IL+AL++S+ VE   +K+R++ E  KW IP
Sbjct:   259 VQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIP 298

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|G3XAJ5 LARP1B "La-related protein 1B" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query:   283 YPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKR 342
             Y   +G  + P E   LK  I +QIEYYFS ENL+ D +L   MD QG++PI++IA F+R
Sbjct:   199 YDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQR 258

Query:   343 VKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKW-IP 381
             V+ ++T+L  IL+AL++S+ VE   +K+R++ E  KW IP
Sbjct:   259 VQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIP 298

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q659C4 LARP1B "La-related protein 1B" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query:   283 YPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKR 342
             Y   +G  + P E   LK  I +QIEYYFS ENL+ D +L   MD QG++PI++IA F+R
Sbjct:   199 YDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQR 258

Query:   343 VKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKW-IP 381
             V+ ++T+L  IL+AL++S+ VE   +K+R++ E  KW IP
Sbjct:   259 VQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIP 298

GO:0003723 "RNA binding" evidence=IEA

WB|WBGene00020097 larp-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 176 (67.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 40/100 (40%), Positives = 60/100 (60%)

Query:   284 PVNSGAPMLP---PETL-------ALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVP 333
             P+N+  P  P   P T         LK  + KQIEYYFS+ENLQ D +L   M  +G++P
Sbjct:   554 PINTAIPFAPIYNPPTAPRPVTDDTLKEYVRKQIEYYFSEENLQKDFFLRRKMGPEGYLP 613

Query:   334 IAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRR 373
             +A+IA F RV+ ++ D   IL+AL++S+ V+   D ++ R
Sbjct:   614 VALIASFPRVRSLTEDYSLILEALKDSTKVDMSPDGLQIR 653

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0034046 "poly(G) RNA binding" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

RGD|1306683 Larp1 "La ribonucleoprotein domain family, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
 Identities = 41/81 (50%), Positives = 56/81 (69%)

Query:   299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
             LK  I +QIEYYFS +NL+ D +L   MDA G++PI +IA F RV+ ++TD+  I  AL+
Sbjct:   330 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 389

Query:   359 NSSTVEAQGDKVRRRDEWSKW 379
             +S  VE   +KVRRR+E  KW
Sbjct:   390 DSKVVEMVEEKVRRREEPEKW 410

GO:0016239 "positive regulation of macroautophagy" evidence=ISO

MGI|MGI:1890165 Larp1 "La ribonucleoprotein domain family, member 1" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 41/81 (50%), Positives = 56/81 (69%)

Query:   299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
             LK  I +QIEYYFS +NL+ D +L   MDA G++PI +IA F RV+ ++TD+  I  AL+
Sbjct:   378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 437

Query:   359 NSSTVEAQGDKVRRRDEWSKW 379
             +S  VE   +KVRRR+E  KW
Sbjct:   438 DSKVVEMVEEKVRRREEPEKW 458

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISA

GO:0016239 "positive regulation of macroautophagy" evidence=ISO

POMBASE|SPAC1527.03 SPAC1527.03 "RNA-binding protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 190 (71.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
 Identities = 45/117 (38%), Positives = 65/117 (55%)

Query:   271 SIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQG 330
             +I+GP P   +P  VN     + P    ++A +  Q+EYYFS ENL  D +L   MD +G
Sbjct:   301 NIQGPFPN--YPVVVNGNG--VNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEG 356

Query:   331 WVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD-------KVRRRDEWSKWI 380
             +VP+A +A F R+K  STDL  +  A + S  ++   D       KVRR++ WS WI
Sbjct:   357 YVPLAFLASFNRIKSFSTDLNLLHAACKASDIIDVAIDLQSPMSIKVRRKETWSPWI 413

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003723 "RNA binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005844 "polysome" evidence=ISO

GO:0006412 "translation" evidence=ISO

UNIPROTKB|Q6PKG0 LARP1 "La-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 43/88 (48%), Positives = 60/88 (68%)

Query:   299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
             LK  I +QIEYYFS +NL+ D +L   MDA G++PI +IA F RV+ ++TD+  I  AL+
Sbjct:   403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 462

Query:   359 NSSTVEAQGDKVRRRDEWSKW-IPASVE 385
             +S  VE   +KVRRR+E  KW +P  V+
Sbjct:   463 DSKVVEIVDEKVRRREEPEKWPLPPIVD 490

GO:0003723 "RNA binding" evidence=IEA

GO:0016239 "positive regulation of macroautophagy" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	563
cd07323	75	cd07323, LAM, LA motif RNA-binding domain	3e-33
smart00715	80	smart00715, LA, Domain in the RNA-binding Lupus La	9e-29
pfam05383	59	pfam05383, La, La domain	2e-25
cd08034	73	cd08034, LARP_1_2, La RNA-binding domain proteins	2e-23
cd08031	75	cd08031, LARP_4_5_like, La RNA-binding domain of p	1e-20
cd08033	77	cd08033, LARP_6, La RNA-binding domain of La-relat	2e-20
cd08038	73	cd08038, LARP_2, La RNA-binding domain of La-relat	2e-20
cd08037	73	cd08037, LARP_1, La RNA-binding domain of La-relat	1e-19
cd08028	82	cd08028, LARP_3, La RNA-binding domain of La-relat	2e-19
cd08029	76	cd08029, LA_like_fungal, La-motif domain of fungal	1e-16
cd08035	75	cd08035, LARP_4, La RNA-binding domain of La-relat	6e-14
cd08032	82	cd08032, LARP_7, La RNA-binding domain of La-relat	2e-13
cd08036	75	cd08036, LARP_5, La RNA-binding domain of La-relat	6e-12
cd08030	90	cd08030, LA_like_plant, La-motif domain of plant p	4e-09
COG5193	438	COG5193, LHP1, La protein, small RNA-binding pol I	3e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001

>gnl|CDD|153396 cd07323, LAM, LA motif RNA-binding domain

 Score =  121 bits (305), Expect = 3e-33
 Identities = 42/75 (56%), Positives = 55/75 (73%), Gaps = 2/75 (2%)

Query: 300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQN 359
              I KQ+EYYFSDENL  D +L SLMD  GWVP++++A F RVK+++TD+  IL+AL++
Sbjct: 1   LEKIKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRD 60

Query: 360 SSTVEAQGD--KVRR 372
           SS VE   D  KVRR
Sbjct: 61  SSVVEVSEDGTKVRR 75

This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 75

>gnl|CDD|128955 smart00715, LA, Domain in the RNA-binding Lupus La protein; unknown function

 Score =  108 bits (273), Expect = 9e-29
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQ-GWVPIAIIADFKRVKRMSTDLPFILDAL 357
           LK  I KQ+EYYFSDENL  D +L   MD   G+VPI+ IA FKRVK ++TD+  I++AL
Sbjct: 3   LKQKIKKQVEYYFSDENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEAL 62

Query: 358 QNSSTVE--AQGDKVRRR 373
           ++S  +E    G KVRRR
Sbjct: 63  RSSPKLEVSEDGLKVRRR 80

Length = 80

>gnl|CDD|203243 pfam05383, La, La domain

 Score = 98.4 bits (246), Expect = 2e-25
 Identities = 32/59 (54%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 303 IVKQIEYYFSDENLQNDHYLISLMDAQ-GWVPIAIIADFKRVKRMSTDLPFILDALQNS 360
           I KQ+EYYFSDENL  D +L   MD   G+VPI+ IA FKR+K+++TD+  I++AL++S
Sbjct: 1   IKKQVEYYFSDENLPRDKFLRKQMDKDPGYVPISTIASFKRIKKLTTDVNLIVEALRSS 59

This presumed domain is found at the N-terminus of La RNA-binding proteins as well as other proteins. The function of this region is uncertain. Length = 59

>gnl|CDD|153403 cd08034, LARP_1_2, La RNA-binding domain proteins similar to La-related proteins 1 and 2

 Score = 93.3 bits (232), Expect = 2e-23
 Identities = 37/73 (50%), Positives = 53/73 (72%)

Query: 300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQN 359
           K  I KQIEYYFS +NL+ D +L   MD +G++PIA+IA F RV+ ++TD+  IL+AL++
Sbjct: 1   KEYIKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKD 60

Query: 360 SSTVEAQGDKVRR 372
           S+ VE   +KVR 
Sbjct: 61  STVVELVDEKVRC 73

This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 73

>gnl|CDD|153400 cd08031, LARP_4_5_like, La RNA-binding domain of proteins similar to La-related proteins 4 and 5

 Score = 85.6 bits (212), Expect = 1e-20
 Identities = 35/74 (47%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQN 359
           K  + +Q+EYYFS ENL ND YL+S MD+  +VPI  IA+F ++K+++TD+  I++AL+ 
Sbjct: 1   KELLKRQLEYYFSRENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRE 60

Query: 360 SSTVE--AQGDKVR 371
           S  V+   +G+KVR
Sbjct: 61  SPNVQVDEKGEKVR 74

This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 75

>gnl|CDD|153402 cd08033, LARP_6, La RNA-binding domain of La-related protein 6

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 300 KANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDAL 357
              IVKQ+EYYFSDENL  D +L+  +  + +G+VPI +IA FK+VK ++ D   +  AL
Sbjct: 1   IQKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAAL 60

Query: 358 QNSSTVE--AQGDKVRR 372
           + SS +     G KVRR
Sbjct: 61  RRSSKLVVSEDGKKVRR 77

This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 77

>gnl|CDD|153407 cd08038, LARP_2, La RNA-binding domain of La-related protein 2

 Score = 85.4 bits (211), Expect = 2e-20
 Identities = 36/73 (49%), Positives = 53/73 (72%)

Query: 300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQN 359
           K  I +QIEYYFS ENL+ D +L   MD QG++PI++IA F RV+ ++T++  IL+AL++
Sbjct: 1   KEYIKRQIEYYFSTENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKD 60

Query: 360 SSTVEAQGDKVRR 372
           S+ VE    K+RR
Sbjct: 61  STEVEIVDQKIRR 73

This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 73

>gnl|CDD|153406 cd08037, LARP_1, La RNA-binding domain of La-related protein 1

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 33/73 (45%), Positives = 49/73 (67%)

Query: 300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQN 359
           K  I +QIEYYFS +NL+ D +L   MD  G++P+ +IA F RV+ ++TD+  I+ AL++
Sbjct: 1   KDYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKD 60

Query: 360 SSTVEAQGDKVRR 372
           S  VE    K+RR
Sbjct: 61  SKVVEIIDMKIRR 73

This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 73

>gnl|CDD|153397 cd08028, LARP_3, La RNA-binding domain of La-related protein 3

 Score = 82.3 bits (204), Expect = 2e-19
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 9/81 (11%)

Query: 299 LKANIVKQIEYYFSDENLQNDHYL---ISLMDAQGWVPIAIIADFKRVKRMSTDLPFILD 355
           L+  I++QIEYYF D NL  D +L   I   D  GWVP+ ++  F R+K +S+D   I  
Sbjct: 4   LEKKIIRQIEYYFGDFNLPRDKFLKEQIKEDD--GWVPMEVMLKFNRLKSLSSDPEVIAK 61

Query: 356 ALQNSST----VEAQGDKVRR 372
           AL+ S +    V     K+RR
Sbjct: 62  ALKKSKSGLIEVSEDKTKIRR 82

This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B). Length = 82

>gnl|CDD|153398 cd08029, LA_like_fungal, La-motif domain of fungal proteins similar to the La autoantigen

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 300 KANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDAL 357
              I KQ+E+YFSD NL  D +L +L      GWVPI  IA FKR++R    L  +++AL
Sbjct: 1   PEEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRF-QPLEAVVEAL 59

Query: 358 QNSSTVE--AQGDKVRR 372
           + S  +E    G+ VRR
Sbjct: 60  RESELLEVSEDGENVRR 76

This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 76

>gnl|CDD|153404 cd08035, LARP_4, La RNA-binding domain of La-related protein 4

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQN 359
           +  + KQ+E+ FS ENL  D YLIS MD+  +VPI  +A+ + +K+++TD+  ILD L++
Sbjct: 1   RECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRS 60

Query: 360 SSTVEA--QGDKVR 371
           S  V+    G+KVR
Sbjct: 61  SPMVQVDETGEKVR 74

This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 75

>gnl|CDD|153401 cd08032, LARP_7, La RNA-binding domain of La-related protein 7

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQ--GWVPIAIIADFKRVKRMSTDLPFILDA 356
           L A+I KQ++++F D NL  D +L   ++    G++ I+++  F ++K+++TD   I  A
Sbjct: 5   LLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARA 64

Query: 357 LQNSSTVEA--QGDKVRR 372
           L+NSS VE   +G ++RR
Sbjct: 65  LKNSSVVELNLEGTRIRR 82

LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation. Length = 82

>gnl|CDD|153405 cd08036, LARP_5, La RNA-binding domain of La-related protein 5

 Score = 61.2 bits (148), Expect = 6e-12
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 305 KQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVE 364
           K +E+  S ENL +D YLIS MD+  +VPI  +A+   +K++STD+  I+D L++   V+
Sbjct: 6   KTLEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQ 65

Query: 365 A--QGDKVR 371
              +G+KVR
Sbjct: 66  VDEKGEKVR 74

This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 75

>gnl|CDD|153399 cd08030, LA_like_plant, La-motif domain of plant proteins similar to the La autoantigen

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRM---------- 346
            K  +++Q+E+YFSD NL  D +L+  +  D  G V +A+I  F R++ +          
Sbjct: 1   TKEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPED 60

Query: 347 --STDLPFILDALQNSSTVEA--QGDKVRR 372
                L  + +AL+ S+ ++    G +V R
Sbjct: 61  VPEDTLKAVAEALRTSTLLKVSEDGKRVGR 90

This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 90

>gnl|CDD|227520 COG5193, LHP1, La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 24/108 (22%)

Query: 302 NIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSS 361
              +QIEYYFS+ENL++D +L       G++P++ I  F R      D   IL A++   
Sbjct: 273 AKKEQIEYYFSEENLKSDEFLRKKFKKAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEVV 332

Query: 362 TVEAQGD------------------------KVRRRDEWSKWIPASVE 385
             +A                              R+ EWS+W+  S  
Sbjct: 333 QNKATNHLEIALGSIEDAQKNEAKDFSPGKKYFIRKKEWSEWLMESNF 380

Length = 438

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 28/137 (20%), Positives = 39/137 (28%), Gaps = 11/137 (8%)

Query: 126 AMPPVFHT--MVPPPHFAVPGYAYPPYPGPFPGAENQTPV----QAFVPPVHAIDAARNV 179
             PP       +PP   A P    P  P  +P      P     Q F+P      A   +
Sbjct: 173 PQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPL 232

Query: 180 QPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRP--LV 237
            P  P+  P      FP    + Q P          Q+      + P PQ+       L 
Sbjct: 233 PPQLPQQPPPLQQPQFPG--LSQQMPPPPPQPP-QQQQQPPQPQAQPPPQNQPTPHPGLP 289

Query: 238 RPAFFGPAPGPGYMVGP 254
           +       P     + P
Sbjct: 290 QGQNAPLPPPQQPQLLP 306

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 58/267 (21%), Positives = 74/267 (27%), Gaps = 28/267 (10%)

Query: 45   PALSDAQTHHQRPKTNPAVVDSSFKLSSDPQGAVAQHKTHGSGNSNPSHKSLPVRNHKSG 104
            P  S +   ++     P  V    +   DP                 +  S P +  +  
Sbjct: 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR-- 2684

Query: 105  SKRNPNAAPPFPVPL-SYHHPSAMPPVFHTMVPPPHFAVPGYAYPPYPGPFPGAENQTPV 163
                  AA P    L S   P   PP   T  P PH  V     PP P     A    P 
Sbjct: 2685 ----RRAARPTVGSLTSLADPPPPPP---TPEPAPHALVSATPLPPGPAAARQASPALPA 2737

Query: 164  QAFVPPVHAIDA-----ARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWHHQRA 218
                P V A  A     AR  +PP   G P  +    P   P  +     +      + +
Sbjct: 2738 APAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797

Query: 219  F-GPRDSVPVPQSIGPRPLVRPAFFGPAPG--PGYMVGPGFPGAALCYVP--------VV 267
               P D    P ++       P    PA    P     P  P       P        V 
Sbjct: 2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Query: 268  PPGSIRGPHPQRFFPYPVNSGAPMLPP 294
            P G +R   P R         AP  PP
Sbjct: 2858 PGGDVRRRPPSR--SPAAKPAAPARPP 2882

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	563
KOG2591	684	consensus c-Mpl binding protein, contains La domai	100.0
cd08037	73	LARP_1 La RNA-binding domain of La-related protein	99.96
cd08038	73	LARP_2 La RNA-binding domain of La-related protein	99.96
cd08036	75	LARP_5 La RNA-binding domain of La-related protein	99.95
cd08035	75	LARP_4 La RNA-binding domain of La-related protein	99.95
cd08034	73	LARP_1_2 La RNA-binding domain proteins similar to	99.95
cd08032	82	LARP_7 La RNA-binding domain of La-related protein	99.95
cd08033	77	LARP_6 La RNA-binding domain of La-related protein	99.94
smart00715	80	LA Domain in the RNA-binding Lupus La protein; unk	99.94
cd08031	75	LARP_4_5_like La RNA-binding domain of proteins si	99.94
cd08028	82	LARP_3 La RNA-binding domain of La-related protein	99.94
cd08029	76	LA_like_fungal La-motif domain of fungal proteins	99.93
cd07323	75	LAM LA motif RNA-binding domain. This domain is fo	99.93
cd08030	90	LA_like_plant La-motif domain of plant proteins si	99.92
PF05383	61	La: La domain; InterPro: IPR006630 Human Ro ribonu	99.88
KOG1855	484	consensus Predicted RNA-binding protein [General f	99.85
KOG2590	448	consensus RNA-binding protein LARP/SRO9 and relate	99.66
KOG4213	205	consensus RNA-binding protein La [RNA processing a	99.52
COG5193	438	LHP1 La protein, small RNA-binding pol III transcr	99.32
COG5193	438	LHP1 La protein, small RNA-binding pol III transcr	98.55
KOG2590	448	consensus RNA-binding protein LARP/SRO9 and relate	97.92
PF09421	989	FRQ: Frequency clock protein; InterPro: IPR018554	91.12
PF01885	186	PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA	90.51
PRK00819	179	RNA 2'-phosphotransferase; Reviewed	89.62
KOG2278	207	consensus RNA:NAD 2'-phosphotransferase TPT1 [Tran	83.08

>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-41  Score=355.59  Aligned_cols=154  Identities=28%  Similarity=0.399  Sum_probs=146.4

Q ss_pred             hHHHHHHHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCCeeecCC
Q 008506          295 ETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRD  374 (563)
Q Consensus       295 e~~~L~~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~dKVRRR~  374 (563)
                      ...+|++.|++|||||||.+||..|.||+.+||+|.||||.+||.|+.|++||+|++||+|+||.|+.||||++..|.|.
T Consensus        92 ls~~~kq~lk~qlEy~fSreNlssD~YL~sQMDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDekgekVrp  171 (684)
T KOG2591|consen   92 LSRDLKQLLKKQLEYYFSRENLSSDRYLISQMDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEKGEKVRP  171 (684)
T ss_pred             cchhHHHHHHHHHHHhhccccccchhhhhhhcccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccCcccccc
Confidence            34489999999999999999999999999999999999999999999999999999999999999999999976555557


Q ss_pred             CCCcccccccccccCCcccCccccccccccccccCCCCCCCCCCCCCcccccccCCCCcccCCCCCCCcccccCCCCCcc
Q 008506          375 EWSKWIPASVEQTMSSTAQTSQSQSAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNGEE  454 (563)
Q Consensus       375 ~w~kwv~~s~e~~~~S~~~~~~~~pieev~~~f~n~~~~~~n~~~~~~~~~efa~n~~~~~~~~~~~~~~~~~~~da~~~  454 (563)
                      ..++||+|++|        |+++++||+|++||+     ++|||  ++++|||++||+        ||||||+|+|||+|
T Consensus       172 ~~kRcIvilRE--------Ipettp~e~Vk~lf~-----~encP--k~iscefa~N~n--------WyITfesd~DAQqA  228 (684)
T KOG2591|consen  172 NHKRCIVILRE--------IPETTPIEVVKALFK-----GENCP--KVISCEFAHNDN--------WYITFESDTDAQQA  228 (684)
T ss_pred             CcceeEEEEee--------cCCCChHHHHHHHhc-----cCCCC--CceeeeeeecCc--------eEEEeecchhHHHH
Confidence            88999999999        999999999999999     77899  999999999999        99999999999999


Q ss_pred             ccc--ccccccCCCCcccc
Q 008506          455 HCD--EFLLLDDGKPAFSA  471 (563)
Q Consensus       455 ~~~--~~~~~~~~kp~~~~  471 (563)
                      |+|  ||+|+|+|||||.-
T Consensus       229 ykylreevk~fqgKpImAR  247 (684)
T KOG2591|consen  229 YKYLREEVKTFQGKPIMAR  247 (684)
T ss_pred             HHHHHHHHHhhcCcchhhh
Confidence            999  99999999999983

>cd08037 LARP_1 La RNA-binding domain of La-related protein 1

Probab=99.96  E-value=6.1e-30  Score=213.39  Aligned_cols=72  Identities=44%  Similarity=0.787  Sum_probs=70.8

Q ss_pred             HHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCCeeec
Q 008506          301 ANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRR  372 (563)
Q Consensus       301 ~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~dKVRR  372 (563)
                      +.|++||||||||+||++|.|||++|++||||||++|++|||||+||.|+++|++||+.|+.|||+++||||
T Consensus         2 ~~I~~QvEyYFSd~NL~~D~fLr~~md~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~~~r~   73 (73)
T cd08037           2 DYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDMKIRR   73 (73)
T ss_pred             hHHHHHHHHhccHhhhccCHHHHHHhccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecchhcC
Confidence            679999999999999999999999999999999999999999999999999999999999999999999996

This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08038 LARP_2 La RNA-binding domain of La-related protein 2

Probab=99.96  E-value=9.4e-30  Score=212.25  Aligned_cols=72  Identities=49%  Similarity=0.821  Sum_probs=70.9

Q ss_pred             HHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCCeeec
Q 008506          301 ANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRR  372 (563)
Q Consensus       301 ~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~dKVRR  372 (563)
                      ++|++||||||||+||++|.|||++|+.||||||++|++|||||+|+.|+++|++||+.|+.|||++|+|||
T Consensus         2 e~I~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~~~r~   73 (73)
T cd08038           2 EYIKRQIEYYFSTENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQKIRR   73 (73)
T ss_pred             hHHHhhHHhhcchhhhccCHHHHHHhCCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCCcccC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999996

This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08036 LARP_5 La RNA-binding domain of La-related protein 5

Probab=99.95  E-value=1.5e-29  Score=211.58  Aligned_cols=71  Identities=39%  Similarity=0.678  Sum_probs=68.1

Q ss_pred             HHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcC--Ceee
Q 008506          301 ANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQG--DKVR  371 (563)
Q Consensus       301 ~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~--dKVR  371 (563)
                      +.|++||||||||+||++|.|||++||+||||||++||+|+|||+||+|+++|++||++|+.|||++  +|||
T Consensus         2 e~i~kQvEyYFS~~NL~~D~fLr~~md~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVR   74 (75)
T cd08036           2 ELLKKTLEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVR   74 (75)
T ss_pred             hhhhcceeeeechhhccccHHHHHHhccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccC
Confidence            6799999999999999999999999999999999999999999999999999999999999999975  4777

This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08035 LARP_4 La RNA-binding domain of La-related protein 4

Probab=99.95  E-value=2.6e-29  Score=210.53  Aligned_cols=72  Identities=43%  Similarity=0.721  Sum_probs=68.7

Q ss_pred             HHHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eee
Q 008506          300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVR  371 (563)
Q Consensus       300 ~~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVR  371 (563)
                      +++|++||||||||+||++|.||+++||+||||||++||+|+|||+||.|+++|++||+.|+.|||++|  |||
T Consensus         1 ~e~i~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVR   74 (75)
T cd08035           1 RECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVR   74 (75)
T ss_pred             ChHHHhhHHhhcCHhhcccCHHHHHhhCcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccC
Confidence            368999999999999999999999999999999999999999999999999999999999999999754  777

This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2

Probab=99.95  E-value=3.3e-29  Score=208.92  Aligned_cols=73  Identities=51%  Similarity=0.823  Sum_probs=71.1

Q ss_pred             HHHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCCeeec
Q 008506          300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRR  372 (563)
Q Consensus       300 ~~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~dKVRR  372 (563)
                      +++|++||||||||+||+||.|||++|+.+|||||++|++|+|||+|+.|+++|++||+.|+.|||+++||||
T Consensus         1 ~~~i~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e~kvR~   73 (73)
T cd08034           1 KEYIKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVDEKVRC   73 (73)
T ss_pred             ChHHHhhHHhhcCHhhhccCHHHHHHcCCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEecCeecC
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999996

This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08032 LARP_7 La RNA-binding domain of La-related protein 7

Probab=99.95  E-value=3.6e-28  Score=206.66  Aligned_cols=76  Identities=36%  Similarity=0.679  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhhhhcCCCCcCcchHHHHhhc--CCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eeec
Q 008506          297 LALKANIVKQIEYYFSDENLQNDHYLISLMD--AQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVRR  372 (563)
Q Consensus       297 ~~L~~~I~kQIEYYFSDeNL~kD~FLRk~MD--~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVRR  372 (563)
                      .+|+++|++||||||||+||++|.||+++|+  .||||||++|++|||||+||.|+++|++||+.|+.|||++|  +|||
T Consensus         3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR   82 (82)
T cd08032           3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR   82 (82)
T ss_pred             HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence            5899999999999999999999999999996  79999999999999999999999999999999999999865  7876

LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.

>cd08033 LARP_6 La RNA-binding domain of La-related protein 6

Probab=99.94  E-value=8.4e-28  Score=202.24  Aligned_cols=72  Identities=49%  Similarity=0.812  Sum_probs=68.8

Q ss_pred             HHHHHHhhhhcCCCCcCcchHHHHhh--cCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eeec
Q 008506          301 ANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVRR  372 (563)
Q Consensus       301 ~~I~kQIEYYFSDeNL~kD~FLRk~M--D~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVRR  372 (563)
                      ++|++||||||||+||++|.|||++|  +.||||||++|++|+|||+|+.|.++|++||+.|..|||++|  +|||
T Consensus         2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR   77 (77)
T cd08033           2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR   77 (77)
T ss_pred             hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence            67999999999999999999999999  789999999999999999999999999999999999999865  7876

This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function

Probab=99.94  E-value=1.1e-27  Score=202.52  Aligned_cols=76  Identities=55%  Similarity=0.887  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhhhhcCCCCcCcchHHHHhhcC-CCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eeecC
Q 008506          298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVRRR  373 (563)
Q Consensus       298 ~L~~~I~kQIEYYFSDeNL~kD~FLRk~MD~-dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVRRR  373 (563)
                      ++.++|++||||||||+||++|.|||++|+. +|||||++|++|+|||+|+.|.++|++||+.|..|||++|  +|||+
T Consensus         2 ~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR~   80 (80)
T smart00715        2 ELKQKIKKQVEYYFSDENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRRR   80 (80)
T ss_pred             hHHHHHHHHHHHHcCHhhhhhCHHHHHHhccCCCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCcC
Confidence            6889999999999999999999999999987 9999999999999999999999999999999999999865  78874

>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5

Probab=99.94  E-value=1.4e-27  Score=199.99  Aligned_cols=71  Identities=46%  Similarity=0.819  Sum_probs=68.1

Q ss_pred             HHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eee
Q 008506          301 ANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVR  371 (563)
Q Consensus       301 ~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVR  371 (563)
                      ++|++||||||||+||++|.||+++|++||||||++|++|+|||+||.|+++|++||+.|+.|||++|  +||
T Consensus         2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR   74 (75)
T cd08031           2 ELLKRQLEYYFSRENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVR   74 (75)
T ss_pred             hHHHHHHHHHcCHhhhccCHHHHHHhCCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccC
Confidence            68999999999999999999999999999999999999999999999999999999999999999966  565

This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08028 LARP_3 La RNA-binding domain of La-related protein 3

Probab=99.94  E-value=3.4e-27  Score=200.69  Aligned_cols=76  Identities=41%  Similarity=0.755  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhhhhcCCCCcCcchHHHHhhc-CCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCC--ceEEcCC--eee
Q 008506          297 LALKANIVKQIEYYFSDENLQNDHYLISLMD-AQGWVPIAIIADFKRVKRMSTDLPFILDALQNSS--TVEAQGD--KVR  371 (563)
Q Consensus       297 ~~L~~~I~kQIEYYFSDeNL~kD~FLRk~MD-~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~--~VEV~~d--KVR  371 (563)
                      ++|..+|++||||||||+||++|.|||++|+ +||||||++|++|+|||+|+.|.++|++||+.|+  .|||++|  +||
T Consensus         2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~VR   81 (82)
T cd08028           2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKIR   81 (82)
T ss_pred             hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhccCCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCccC
Confidence            3689999999999999999999999999997 5999999999999999999999999999999999  9999866  677


Q ss_pred             c
Q 008506          372 R  372 (563)
Q Consensus       372 R  372 (563)
                      |
T Consensus        82 R   82 (82)
T cd08028          82 R   82 (82)
T ss_pred             C
Confidence            5

This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).

>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen

Probab=99.93  E-value=1e-26  Score=195.22  Aligned_cols=71  Identities=45%  Similarity=0.800  Sum_probs=66.9

Q ss_pred             HHHHHHhhhhcCCCCcCcchHHHHhh--cCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eeec
Q 008506          301 ANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVRR  372 (563)
Q Consensus       301 ~~I~kQIEYYFSDeNL~kD~FLRk~M--D~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVRR  372 (563)
                      ++|++||||||||+||++|.|||++|  +.||||||++|++|+|||+|+.+ ++|++||+.|+.|||++|  +|||
T Consensus         2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR   76 (76)
T cd08029           2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR   76 (76)
T ss_pred             hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence            57999999999999999999999999  69999999999999999999976 999999999999999865  7886

This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd07323 LAM LA motif RNA-binding domain

Probab=99.93  E-value=2.7e-26  Score=191.72  Aligned_cols=72  Identities=58%  Similarity=0.999  Sum_probs=68.9

Q ss_pred             HHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eeec
Q 008506          301 ANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVRR  372 (563)
Q Consensus       301 ~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVRR  372 (563)
                      ++|++||||||||+||++|.||+++|+++|||||++|++|+|||+|+.|.++|++||+.|..|||+++  +|||
T Consensus         2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr   75 (75)
T cd07323           2 EKIKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR   75 (75)
T ss_pred             hHHHhhhHhccCHhhhCcCHHHHHhcCCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999965  6775

This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen

Probab=99.92  E-value=3.3e-26  Score=197.73  Aligned_cols=73  Identities=34%  Similarity=0.681  Sum_probs=67.9

Q ss_pred             HHHHHHHhhhhcCCCCcCcchHHHHhh--cCCCcEehhhhhcchhHhhhcC------------CHHHHHHHHhcCCceEE
Q 008506          300 KANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMST------------DLPFILDALQNSSTVEA  365 (563)
Q Consensus       300 ~~~I~kQIEYYFSDeNL~kD~FLRk~M--D~dG~VPIslIasFnRVK~LT~------------Di~lI~eALr~S~~VEV  365 (563)
                      +++|++||||||||+||++|.||+++|  +.||||||++|++|||||+|+.            |+++|++||+.|..|||
T Consensus         2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev   81 (90)
T cd08030           2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV   81 (90)
T ss_pred             hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence            678999999999999999999999999  7899999999999999999985            37899999999999999


Q ss_pred             cCC--eeec
Q 008506          366 QGD--KVRR  372 (563)
Q Consensus       366 ~~d--KVRR  372 (563)
                      ++|  +|||
T Consensus        82 seD~~~VRR   90 (90)
T cd08030          82 SEDGKRVGR   90 (90)
T ss_pred             cCCCCccCC
Confidence            976  5665

This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La

Probab=99.88  E-value=1.6e-23  Score=169.03  Aligned_cols=58  Identities=55%  Similarity=0.986  Sum_probs=53.4

Q ss_pred             HHHHhhhhcCCCCcCcchHHHHhhcC--CCcEehhhhhcchhHhhhc-CCHHHHHHHHhcC
Q 008506          303 IVKQIEYYFSDENLQNDHYLISLMDA--QGWVPIAIIADFKRVKRMS-TDLPFILDALQNS  360 (563)
Q Consensus       303 I~kQIEYYFSDeNL~kD~FLRk~MD~--dG~VPIslIasFnRVK~LT-~Di~lI~eALr~S  360 (563)
                      |++||||||||+||++|.||+++|+.  ||||||++|++|+|||+|+ .|+++|++||+.|
T Consensus         1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S   61 (61)
T PF05383_consen    1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS   61 (61)
T ss_dssp             HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred             ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence            79999999999999999999999986  9999999999999999999 8999999999987

The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.

>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]

Probab=99.85  E-value=7.1e-22  Score=207.22  Aligned_cols=102  Identities=37%  Similarity=0.657  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhhhhcCCCCcCcchHHHHhh--cCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eee
Q 008506          296 TLALKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVR  371 (563)
Q Consensus       296 ~~~L~~~I~kQIEYYFSDeNL~kD~FLRk~M--D~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVR  371 (563)
                      .++|..+|++||||||||+||.+|.||.++|  +.+|||||++|++|||||+||.|..+|..|||.|..|+|++|  |||
T Consensus       137 sedl~~kIv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVr  216 (484)
T KOG1855|consen  137 SEDLAAKIVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVR  216 (484)
T ss_pred             cHHHHHHHHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceee
Confidence            3689999999999999999999999999999  689999999999999999999999999999999999999865  999


Q ss_pred             cCCCCCcccccccccccCCcccCccccccc
Q 008506          372 RRDEWSKWIPASVEQTMSSTAQTSQSQSAE  401 (563)
Q Consensus       372 RR~~w~kwv~~s~e~~~~S~~~~~~~~pie  401 (563)
                      |-.++..+    .+...+|++.+.++++.+
T Consensus       217 RisPlp~~----~~eel~srtivaenLP~D  242 (484)
T KOG1855|consen  217 RISPLPEF----DEEELPSRTIVAENLPLD  242 (484)
T ss_pred             ecCCCCCc----cccccccceEEEecCCcc
Confidence            98876655    345678999998888876

>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=2.3e-15  Score=160.87  Aligned_cols=80  Identities=45%  Similarity=0.728  Sum_probs=73.1

Q ss_pred             HHHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCCeeec-CCCCCc
Q 008506          300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRR-RDEWSK  378 (563)
Q Consensus       300 ~~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~dKVRR-R~~w~k  378 (563)
                      .+-|.+|||||||.|||++|.||++     +||+|.||++|+||+.|+.|+++|++||+.+..||+..|-+|| +..|..
T Consensus       301 ~~~~~~~ie~~FSeE~~~~d~~n~~-----k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d~~~r~~~~~g~  375 (448)
T KOG2590|consen  301 IAFIQEPIEFYFSEENLQRDRFNRE-----KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGDLERRGGDRWGN  375 (448)
T ss_pred             ccccccccccccchHHHhhhhhhhc-----ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccchhhhcccccccc
Confidence            4558999999999999999999987     5677999999999999999999999999999999999999988 888999


Q ss_pred             cccccc
Q 008506          379 WIPASV  384 (563)
Q Consensus       379 wv~~s~  384 (563)
                      |+....
T Consensus       376 ~~~ra~  381 (448)
T KOG2590|consen  376 HVSRAK  381 (448)
T ss_pred             eecccc
Confidence            986554

>KOG4213 consensus RNA-binding protein La [RNA processing and modification]

Probab=99.52  E-value=6.6e-15  Score=141.42  Aligned_cols=76  Identities=43%  Similarity=0.782  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhhhhcCCCCcCcchHHHHhh--cCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCC--ceEEcCCe--e
Q 008506          297 LALKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSS--TVEAQGDK--V  370 (563)
Q Consensus       297 ~~L~~~I~kQIEYYFSDeNL~kD~FLRk~M--D~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~--~VEV~~dK--V  370 (563)
                      +.|-++|+.||||||.|-||.||.|||.++  ..+|||||.+++.|+|+.+|++|++.|++||+.|.  +++|++|+  +
T Consensus        11 a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k~   90 (205)
T KOG4213|consen   11 AALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTKI   90 (205)
T ss_pred             hHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhhh
Confidence            578888999999999999999999999999  48999999999999999999999999999999985  78999875  5


Q ss_pred             ec
Q 008506          371 RR  372 (563)
Q Consensus       371 RR  372 (563)
                      ||
T Consensus        91 rr   92 (205)
T KOG4213|consen   91 RR   92 (205)
T ss_pred             hc
Confidence            55

>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=4.1e-13  Score=141.13  Aligned_cols=86  Identities=35%  Similarity=0.624  Sum_probs=72.3

Q ss_pred             HHHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcC-----------------Cc
Q 008506          300 KANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNS-----------------ST  362 (563)
Q Consensus       300 ~~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S-----------------~~  362 (563)
                      ...|+.|||||||.+||+.|.|||++|+.+||||+++|..|.|.+++..|.++|+.|||.+                 ..
T Consensus       271 I~a~k~QiEyYFseenl~~d~~lrkk~~kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~v~n~a~~~~~~~~~~~~d~  350 (438)
T COG5193         271 IMAKKEQIEYYFSEENLKSDEFLRKKFKKAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEVVQNKATNHLEIALGSIEDA  350 (438)
T ss_pred             hhhHHhhhHhhhhHHhhhhhhHHHhhhhhcccccHhhhhhhhhccccCCchhhhHHHHHHHhhhhhhhhhhhhhhccchh
Confidence            4456679999999999999999999999999999999999999999999999999999987                 11


Q ss_pred             --eEEc----CC-eeecCCCCCcccccccc
Q 008506          363 --VEAQ----GD-KVRRRDEWSKWIPASVE  385 (563)
Q Consensus       363 --VEV~----~d-KVRRR~~w~kwv~~s~e  385 (563)
                        .+.+    ++ .++||..|..|++..-+
T Consensus       351 ~~~~~k~~sp~~~~f~rkk~wSewl~e~~~  380 (438)
T COG5193         351 QKNEAKDFSPGKKYFIRKKEWSEWLMESNF  380 (438)
T ss_pred             hhccccccCcchhhhhhhhhhhhhhccccc
Confidence              1111    12 47889999999987553

>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.6e-08  Score=107.15  Aligned_cols=72  Identities=33%  Similarity=0.628  Sum_probs=64.6

Q ss_pred             HHHHhhhhcC-----CCCcCcchHHHHhh----cCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcC---CceEEcC--C
Q 008506          303 IVKQIEYYFS-----DENLQNDHYLISLM----DAQGWVPIAIIADFKRVKRMSTDLPFILDALQNS---STVEAQG--D  368 (563)
Q Consensus       303 I~kQIEYYFS-----DeNL~kD~FLRk~M----D~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S---~~VEV~~--d  368 (563)
                      +.+|+|||||     |.|+.+|.||+..-    ..+|||||.+|++|+||+.++..++.|..||+.|   .+++++.  .
T Consensus        75 ~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs~~~~v~~a~rks~~~rv~e~Sssgs  154 (438)
T COG5193          75 TLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARVLEVSSSGS  154 (438)
T ss_pred             cccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCCchhhhhhhhhcCcccceeeeccccc
Confidence            8899999999     99999999999865    2599999999999999999999999999999999   7889874  4


Q ss_pred             eeecCC
Q 008506          369 KVRRRD  374 (563)
Q Consensus       369 KVRRR~  374 (563)
                      ++||++
T Consensus       155 n~~r~~  160 (438)
T COG5193         155 NKNRTE  160 (438)
T ss_pred             cccccc
Confidence            666654

>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=6.6e-06  Score=89.17  Aligned_cols=248  Identities=13%  Similarity=0.092  Sum_probs=145.5

Q ss_pred             HHHHHHH--HHhhhhcCCCCcCcchHHHHhhcCCC---cEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCCeeec
Q 008506          298 ALKANIV--KQIEYYFSDENLQNDHYLISLMDAQG---WVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVRR  372 (563)
Q Consensus       298 ~L~~~I~--kQIEYYFSDeNL~kD~FLRk~MD~dG---~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~dKVRR  372 (563)
                      .|.+++.  |+++|||+..++.+|.|++..|+..|   +.+|+.+..|.++..++++...++..++.|...+....+.|+
T Consensus        96 ~l~e~~~~~k~~s~~~~~~~~~~~~~~~~k~~~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~sa~~~~~~~~~~~  175 (448)
T KOG2590|consen   96 PLKEYSKSDKKKSWPASKPFTPRDSFKGSKPTNTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGSASSNPVPNNSRA  175 (448)
T ss_pred             cccccccccccccCcccCCCCccccccCCCccccCCCccCCCccccccccccCcccccccccCcCCCCCcCCcCcccccc
Confidence            4455554  49999999999999999999999888   999999999999999999999999999999889999999999


Q ss_pred             CCCCCcccccccccccCCcccCccccccccccccccCCCCCCCCCCCCCcccccccCCCCcccCCCCCCCcccccCCCCC
Q 008506          373 RDEWSKWIPASVEQTMSSTAQTSQSQSAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSVEIEPDNG  452 (563)
Q Consensus       373 R~~w~kwv~~s~e~~~~S~~~~~~~~pieev~~~f~n~~~~~~n~~~~~~~~~efa~n~~~~~~~~~~~~~~~~~~~da~  452 (563)
                      |..-++|...... ....+. +++.+..+..+.      .++.-....+..+-.=.++.+.    .+..=.++.+.-++.
T Consensus       176 ~~~~qr~~~~~~~-~~~~~~-~d~~~~t~~~n~------~~~~~~~~~~~~n~~~~~~~~s----s~~q~~k~~~~~~~~  243 (448)
T KOG2590|consen  176 KPLNQRWPDSSPS-SGGVRD-GDFKQLTNNPNS------VPGQRGQNQHHDNSSQNPHHNS----SGFQRVKNMNGNSNH  243 (448)
T ss_pred             ccccccCCCCCCC-CcCccc-cchhhhhcCcCC------CCccccccccccccCcCCCCCC----CCccchhhcccCccc
Confidence            9999999865441 222221 344333332111      1111111011111111111110    000000111111111


Q ss_pred             cccc------------------------cccccccCCCCccccCCCCCcccccccccccccCCCccccCccccccccccc
Q 008506          453 EEHC------------------------DEFLLLDDGKPAFSAENGDSRTSLSESDMKFSNLGTNHNISSEDLSQRTESA  508 (563)
Q Consensus       453 ~~~~------------------------~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (563)
                      ..+.                        .--.+...+.|+...-+- .--.+..+-  ...-.+.--+-|++..+.+.-.
T Consensus       244 ~q~~~G~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~p~~~~~~~-~~~s~~pi~--~~~~~~~~~ie~~FSeE~~~~d  320 (448)
T KOG2590|consen  244 YQYSRGFSNSLPDLGNQNRNRVKNSSYRPAPQKSQSGEPIQPGDKN-QIPSVQPIG--NVIAFIQEPIEFYFSEENLQRD  320 (448)
T ss_pred             cccCCCcCCccccccCcccccccccccccchhhcCCCCccccCccc-cCCCccccc--ccccccccccccccchHHHhhh
Confidence            1111                        011222222232220000 000000000  0122233345567777777777


Q ss_pred             cccccC------CccccccchhhhhhhhcccccccccccchhhhhhhhhcccccccCcC
Q 008506          509 RFGDYG------TQGLERSSTVAVQNLIELSNDFANTFMLDEELEIEQKTMKKDDLSAH  561 (563)
Q Consensus       509 ~~~~~~------~~~~~~~s~~~~~n~~~~s~df~~tfmldeelele~~~~~~~~~s~~  561 (563)
                      .++..+      ++++...+++.. |+..|..||.+++++||+++||++--++.+++..
T Consensus       321 ~~n~~k~~~l~~ia~F~r~ad~s~-d~nli~~alr~s~ive~~~d~~~r~~~~~g~~~~  378 (448)
T KOG2590|consen  321 RFNREKFVPLRVIAKFKRVADLSS-DINLILAALRNSLIVEETGDLERRGGDRWGNHVS  378 (448)
T ss_pred             hhhhcccchhhhhhhhhhhhhccc-CHHHHHHHHhhhhhhhccchhhhcccccccceec
Confidence            777766      667766666665 8889999999999999999999995555555443

>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []

Probab=91.12  E-value=1.7  Score=52.02  Aligned_cols=49  Identities=24%  Similarity=0.546  Sum_probs=43.4

Q ss_pred             hcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhc-CCceEEc--CCeeecCC
Q 008506          326 MDAQGWVPIAIIADFKRVKRMSTDLPFILDALQN-SSTVEAQ--GDKVRRRD  374 (563)
Q Consensus       326 MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~-S~~VEV~--~dKVRRR~  374 (563)
                      .|.+|||-|.|||+.-.+--|..+-+.|+.||.. |+.+||+  +-|||=|-
T Consensus       473 pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRG  524 (989)
T PF09421_consen  473 PDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRG  524 (989)
T ss_pred             cccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecC
Confidence            3789999999999999999999999999999985 8899997  45999664

This protein has been shown to interact with itself via a coiled-coil [].

>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate

Probab=90.51  E-value=0.37  Score=47.13  Aligned_cols=52  Identities=21%  Similarity=0.359  Sum_probs=35.4

Q ss_pred             hhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCc--eEEc-----CCeeecCCCC
Q 008506          325 LMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSST--VEAQ-----GDKVRRRDEW  376 (563)
Q Consensus       325 ~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~--VEV~-----~dKVRRR~~w  376 (563)
                      .||++|||+|..|+...+.+.+..+.+.|.+++++.+.  .|+.     +.+||.+...
T Consensus        26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~qGH   84 (186)
T PF01885_consen   26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQGH   84 (186)
T ss_dssp             ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS--
T ss_pred             ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECCCC
Confidence            37899999999999999999888788999999998764  6666     6789977543

Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.

>PRK00819 RNA 2'-phosphotransferase; Reviewed

Probab=89.62  E-value=0.55  Score=45.98  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=42.6

Q ss_pred             hhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCc--eEEcCCeeecCCCCCcc
Q 008506          325 LMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSST--VEAQGDKVRRRDEWSKW  379 (563)
Q Consensus       325 ~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~--VEV~~dKVRRR~~w~kw  379 (563)
                      .||++|||+|..|+...+.+....+.+.|.+++++.+.  .|+++++||.+....-.
T Consensus        27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~~~~IRA~qGHSi~   83 (179)
T PRK00819         27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEISGDRIRARQGHSVD   83 (179)
T ss_pred             ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEecCceEEeccCcCCc
Confidence            46899999999999877654333467899999998875  66778899988765443

>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]

Probab=83.08  E-value=0.93  Score=44.98  Aligned_cols=41  Identities=15%  Similarity=0.291  Sum_probs=35.7

Q ss_pred             HHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCc
Q 008506          322 LISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSST  362 (563)
Q Consensus       322 LRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~  362 (563)
                      ++=+|+.||||+|..|++.++.|.+.-.+++|.++++.-..
T Consensus        25 ~~L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK   65 (207)
T KOG2278|consen   25 LRLNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK   65 (207)
T ss_pred             hcccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence            34467899999999999999999999889999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	563
2cqk_A	101	Solution Structure Of The La Domain Of C-Mpl Bindin		9e-10
1s7a_A	103	Nmr Structure Of The La Motif Of Human La Protein L		9e-10
2vod_A	193	Crystal Structure Of N-Terminal Domains Of Human La		1e-09
1yty_A	194	Structural Basis For Recognition Of Uuuoh 3'-Termin		5e-09
1zh5_A	195	Structural Basis For Recognition Of Uuuoh 3'-Termin		5e-09
1s29_A	92	La Autoantigen N-Terminal Domain Length = 92		2e-07

>pdb|2CQK|A Chain A, Solution Structure Of The La Domain Of C-Mpl Binding Protein Length = 101

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
           LK  + KQ+E+ FS ENL  D YLIS MD+  ++PI  +A+ + +K+++TD   IL+ L+
Sbjct: 14  LKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLR 73
Query: 359 NSSTVEA--QGDKVR 371
           +S  V+   +G+KVR
Sbjct: 74  SSPMVQVDEKGEKVR 88

>pdb|1S7A|A Chain A, Nmr Structure Of The La Motif Of Human La Protein Length = 103

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
           AL+A I  QIEYYF D NL  D +L   +   +GWVP+ I+  F R+ R++TD   I++A
Sbjct: 12  ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 357 LQNSST--VEAQGDKVRRRDEWSKWIP 381
           L  S    +E   DK + R   SK +P
Sbjct: 72  LSKSKAELMEISEDKTKIRRSPSKPLP 98

>pdb|2VOD|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La Protein Complexed With Rna Oligomer Auauuuu Length = 193

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
           AL+A I  QIEYYF D NL  D +L   +   +GWVP+ I+  F R+ R++TD   I++A
Sbjct: 11  ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 70
Query: 357 LQNSST--VEAQGDKVRRR 373
           L  S    +E   DK + R
Sbjct: 71  LSKSKAELMEISEDKTKIR 89

>pdb|1YTY|A Chain A, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of Nascent Rna Pol Iii Transcripts By La Autoantigen Length = 194

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
           AL+A I  QIEYYF D NL  D +L   +   +GWVP+ I   F R+ R++TD   I++A
Sbjct: 12  ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIXIKFNRLNRLTTDFNVIVEA 71
Query: 357 LQNSST----VEAQGDKVRR 372
           L  S      +     K+RR
Sbjct: 72  LSKSKAELXEISEDKTKIRR 91

>pdb|1ZH5|A Chain A, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of Nascent Rna Pol Iii Transcripts By La Autoantigen Length = 195

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
           AL+A I  QIEYYF D NL  D +L   +   +GWVP+ I   F R+ R++TD   I++A
Sbjct: 13  ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIXIKFNRLNRLTTDFNVIVEA 72
Query: 357 LQNSST----VEAQGDKVRR 372
           L  S      +     K+RR
Sbjct: 73  LSKSKAELXEISEDKTKIRR 92

>pdb|1S29|A Chain A, La Autoantigen N-Terminal Domain Length = 92

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 300 KANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDAL 357
           K  + KQ+E+YFSD N+Q D +L      +A+G+V +  +  FKRV  ++TD+  +++A+
Sbjct: 11  KQKLQKQVEFYFSDVNVQRDIFLKGKXAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAI 70
Query: 358 QNSS--TVEAQGDKVRRRD 374
           + S    +   G  VRRRD
Sbjct: 71  RPSEKLVLSEDGLXVRRRD 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	563
2cqk_A	101	C-MPL binding protein; LA domain, structural genom	9e-33
1s29_A	92	LA protein; winged helix-turn-helix, autoantigen,	1e-28
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	8e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05

>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46 Length = 101

 Score =  119 bits (301), Expect = 9e-33
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 2/99 (2%)

Query: 287 SGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRM 346
           S        T  LK  + KQ+E+ FS ENL  D YLIS MD+  ++PI  +A+ + +K++
Sbjct: 2   SSGSSGAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKL 61

Query: 347 STDLPFILDALQNSSTVE--AQGDKVRRRDEWSKWIPAS 383
           +TD   IL+ L++S  V+   +G+KVR   +     P+S
Sbjct: 62  TTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCISGPSS 100

>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46 Length = 92

 Score =  108 bits (271), Expect = 1e-28
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 294 PETLALKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLP 351
           P +   K  + KQ+E+YFSD N+Q D +L   M  +A+G+V +  +  FKRV  ++TD+ 
Sbjct: 5   PLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVK 64

Query: 352 FILDALQNSSTVE--AQGDKVRRRDE 375
            +++A++ S  +     G  VRRRD 
Sbjct: 65  EVVEAIRPSEKLVLSEDGLMVRRRDP 90

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193

 Score = 83.7 bits (206), Expect = 8e-19
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 295 ETLALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFI 353
           +  AL+A I  QIEYYF D NL  D +L   +   +GWVP+ I+  F R+ R++TD   I
Sbjct: 8   KMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVI 67

Query: 354 LDALQNSSTVEAQ 366
           ++AL  S     +
Sbjct: 68  VEALSKSKAELME 80

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 60/444 (13%), Positives = 123/444 (27%), Gaps = 117/444 (26%)

Query: 163 VQAFVPPVHAID--------AARNVQPPPPRGDPNASVANFPNRRPNTQEPGGHMNHAWH 214
           VQ FV  V  I+             QP             +  +R          +  ++
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-------RMYIEQR----------DRLYN 121

Query: 215 HQRAFGPRDSVPVPQSIGPRPLVRPAFFGPAPGPGYMV-G-PGFPG-----AALCYVPVV 267
             + F   + V   Q   P   +R A     P    ++ G  G  G       +C     
Sbjct: 122 DNQVFAKYN-VSRLQ---PYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVC----- 171

Query: 268 PPGSIRGPHPQRFFPYPV---NSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLIS 324
                     Q    + +   N      P   L +   ++ QI+  ++  +  + +  + 
Sbjct: 172 -----LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 325 LMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGDKVR----RRDEWSKWI 380
           +   Q       +    + K     L  +L  +QN+    A     +     R       
Sbjct: 227 IHSIQAE-----LRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTRF------ 274

Query: 381 PASVEQTMSSTAQTSQSQSAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPP 440
              V   +S+   T         +D      +  D  + +               +++P 
Sbjct: 275 -KQVTDFLSAATTT------HISLDHHSMT-LTPDEVKSL------LLKYLDCRPQDLPR 320

Query: 441 SFDSVEIEP----------DNGEEHCDEFLLLDDGKPAFSAENGDSRTSLSESDMK--FS 488
               +   P           +G    D +  ++  K   +     S   L  ++ +  F 
Sbjct: 321 E--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFD 376

Query: 489 NLG---TNHNISSEDLS------QRTESARFGDYGTQGLERSSTVAVQNLIELSNDFANT 539
            L     + +I +  LS       +++           L + S      L+E     +  
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVV----VNKLHKYS------LVEKQPKESTI 426

Query: 540 FMLDEELEIEQKTMKKDDLSAHKR 563
            +    LE++ K   +  L  H+ 
Sbjct: 427 SIPSIYLELKVKLENEYAL--HRS 448

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 21/165 (12%), Positives = 36/165 (21%), Gaps = 4/165 (2%)

Query: 74  PQGAVAQHKTHGSGNSNPSHKSLPVRNHKSGSKRNPNAAPPFPVPLSYHHPSAMPPVFHT 133
           PQ    Q+  + +    P+    P     +G        PP     S      + P    
Sbjct: 10  PQAQ-LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ 68

Query: 134 MVPPPHFAVPGYAYPP---YPGPFPGAENQTPVQAFVPPVHAIDAARNVQPPPPRGDPNA 190
           +      A            P   P A  Q  V   +             P   +     
Sbjct: 69  LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128

Query: 191 SVANFPNRRPNTQEPGGHMNHAWHHQRAFGPRDSVPVPQSIGPRP 235
                P  +    +    +           P   +P  + + P  
Sbjct: 129 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSE 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	563
1s29_A	92	LA protein; winged helix-turn-helix, autoantigen,	99.96
2cqk_A	101	C-MPL binding protein; LA domain, structural genom	99.95
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.9
1wfx_A	186	Probable RNA 2'-phosphotransferase; tRNA splicing,	90.35
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	83.57

>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46

Probab=99.96  E-value=2.5e-29  Score=216.24  Aligned_cols=80  Identities=36%  Similarity=0.577  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhhhhcCCCCcCcchHHHHhh--cCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcC--Ceeec
Q 008506          297 LALKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQG--DKVRR  372 (563)
Q Consensus       297 ~~L~~~I~kQIEYYFSDeNL~kD~FLRk~M--D~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~--dKVRR  372 (563)
                      ++++++|++||||||||+||+||.||+++|  ++||||||++|++|+|||+||.|+++|++||+.|+.|||++  ++|||
T Consensus         8 ~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~VRR   87 (92)
T 1s29_A            8 SENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRR   87 (92)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEE
T ss_pred             HHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCEEeC
Confidence            589999999999999999999999999999  78999999999999999999999999999999999999985  48999


Q ss_pred             CCCC
Q 008506          373 RDEW  376 (563)
Q Consensus       373 R~~w  376 (563)
                      |.++
T Consensus        88 ~~Pl   91 (92)
T 1s29_A           88 RDPL   91 (92)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9864

>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46

Probab=99.95  E-value=1.4e-29  Score=221.30  Aligned_cols=85  Identities=39%  Similarity=0.636  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcC--Ceeec
Q 008506          295 ETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQG--DKVRR  372 (563)
Q Consensus       295 e~~~L~~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~--dKVRR  372 (563)
                      ..++++++|++||||||||+||++|.||+++|++||||||++|++|+|||+||+|+++|++||+.|+.|||++  +||||
T Consensus        10 ~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kVRr   89 (101)
T 2cqk_A           10 STEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRP   89 (101)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEEEE
T ss_pred             CHHHHHHHHHHHHHhhcchhhhccCHHHHHhhhcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCeeee
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999985  48998


Q ss_pred             CCCCCcccc
Q 008506          373 RDEWSKWIP  381 (563)
Q Consensus       373 R~~w~kwv~  381 (563)
                      |.  ++|++
T Consensus        90 ~~--~~~i~   96 (101)
T 2cqk_A           90 SH--KRCIS   96 (101)
T ss_dssp             CC--SCCCC
T ss_pred             CC--CCCcC
Confidence            74  56764

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.90  E-value=9.8e-25  Score=204.86  Aligned_cols=159  Identities=23%  Similarity=0.313  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhhhhcCCCCcCcchHHHHhhc-CCCcEehhhhhcchhHhhhcCCHHHHHHHHhcC--CceEEcCC--eee
Q 008506          297 LALKANIVKQIEYYFSDENLQNDHYLISLMD-AQGWVPIAIIADFKRVKRMSTDLPFILDALQNS--STVEAQGD--KVR  371 (563)
Q Consensus       297 ~~L~~~I~kQIEYYFSDeNL~kD~FLRk~MD-~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S--~~VEV~~d--KVR  371 (563)
                      ++|+.+|++||||||||+||++|.||+++|+ ++|||+|++|++|+|||+|+.|+++|++||+.|  ..|+++++  +||
T Consensus        10 ~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~~vr   89 (193)
T 2voo_A           10 AALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIR   89 (193)
T ss_dssp             HHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEE
T ss_pred             HHHHHHHHHHhheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccceEE
Confidence            5899999999999999999999999999997 799999999999999999999999999999999  89999865  788


Q ss_pred             cCCCCC--cccccccccccCCc----ccCccccccccccccccCCCCCCCCCCCCCcccccccCCCCcccCCCCCCCccc
Q 008506          372 RRDEWS--KWIPASVEQTMSST----AQTSQSQSAENPVDSIGNGDINKDNKREMPKENVGFSSNTGNLMENVPPSFDSV  445 (563)
Q Consensus       372 RR~~w~--kwv~~s~e~~~~S~----~~~~~~~pieev~~~f~n~~~~~~n~~~~~~~~~efa~n~~~~~~~~~~~~~~~  445 (563)
                      |+....  .+-.... .....+    ..++.+...++.+.+|+.--         ...+|....+.+  ....--+|++|
T Consensus        90 R~~~~p~p~~~~~~~-~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G---------~v~~v~i~~~~~--~~~kG~aFVeF  157 (193)
T 2voo_A           90 RSPSKPLPEVTDEYK-NDVKNRSVYIKGFPTDATLDDIKEWLEDKG---------QVLNIQMRRTLH--KAFKGSIFVVF  157 (193)
T ss_dssp             ECTTSCCCCCCHHHH-HHHHHTEEEEECCCTTCCHHHHHHHHTTSC---------CEEEEEEEECTT--CCEEEEEEEEE
T ss_pred             ecccCCCcccchhhh-hccccCEEEecCCCCcCCHHHHHHHHhcCC---------CEEEEEEEECCC--CCcccEEEEEE
Confidence            874211  1100000 001111    12667777788888887321         111222211111  11222389999


Q ss_pred             ccCCCCCcccccccccccCCCCc
Q 008506          446 EIEPDNGEEHCDEFLLLDDGKPA  468 (563)
Q Consensus       446 ~~~~da~~~~~~~~~~~~~~kp~  468 (563)
                      +..++|.+|+..... ...|+++
T Consensus       158 ~~~e~A~~A~~~~~~-~~~Gr~l  179 (193)
T 2voo_A          158 DSIESAKKFVETPGQ-KYKETDL  179 (193)
T ss_dssp             SSHHHHHHHHHCTTC-EETTEEC
T ss_pred             CCHHHHHHHHHhCCC-eECCEEE
Confidence            999999999865322 4445443

>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5

Probab=90.35  E-value=0.34  Score=46.30  Aligned_cols=54  Identities=15%  Similarity=0.207  Sum_probs=40.7

Q ss_pred             hcCCCcEehhhhhcchhHh--hhcCCHHHHHHHHhcCCc--eEEcCCeeecCCCCCccc
Q 008506          326 MDAQGWVPIAIIADFKRVK--RMSTDLPFILDALQNSST--VEAQGDKVRRRDEWSKWI  380 (563)
Q Consensus       326 MD~dG~VPIslIasFnRVK--~LT~Di~lI~eALr~S~~--VEV~~dKVRRR~~w~kwv  380 (563)
                      ||++|||+|..|+. -+.+  ....+.+.|.+++++.+.  .++++++||.+....--|
T Consensus        24 ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~~~IRA~qGHSi~V   81 (186)
T 1wfx_A           24 LTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRNGEIRARYGHSIPV   81 (186)
T ss_dssp             CCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEETTEEEESSCCSSCC
T ss_pred             cCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeeccEEEeccCCCCcc
Confidence            58999999999998 4433  334567889999887764  788899999887654433

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=83.57  E-value=1.7  Score=50.48  Aligned_cols=85  Identities=25%  Similarity=0.439  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhhhhcCCCCcCcchHHHHhh--------cCCCcEehhhhhcch-hHhhhcC--------C----HHHHH
Q 008506          296 TLALKANIVKQIEYYFSDENLQNDHYLISLM--------DAQGWVPIAIIADFK-RVKRMST--------D----LPFIL  354 (563)
Q Consensus       296 ~~~L~~~I~kQIEYYFSDeNL~kD~FLRk~M--------D~dG~VPIslIasFn-RVK~LT~--------D----i~lI~  354 (563)
                      .++..+.|+.+|+|.|||+=|.-..=|..++        +--|.||+++|+.+. ||-.+++        |    +.+|.
T Consensus       104 ~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~  183 (950)
T 3htx_A          104 VDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVM  183 (950)
T ss_dssp             HHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHHHH
Confidence            4789999999999999999999888787777        246899999999984 4444442        1    46788


Q ss_pred             HHHhcCCceEE-cCCeeecCCCCCccc
Q 008506          355 DALQNSSTVEA-QGDKVRRRDEWSKWI  380 (563)
Q Consensus       355 eALr~S~~VEV-~~dKVRRR~~w~kwv  380 (563)
                      .|...++-+-+ ++.-|||+++..-=+
T Consensus       184 ~a~~~~~~~~~~~~~~~~~~~~~~~~~  210 (950)
T 3htx_A          184 KAAAKLADYIVASPHGLRRKNAYPSEI  210 (950)
T ss_dssp             HHHHHCCSSEEEETTEEEESSCCCHHH
T ss_pred             HHhhcCCCcEEeCCcccccCCCCCHHH
Confidence            88887754445 456899998765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	563
d2cqka1	88	a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Hu	8e-33
d1zh5a1	99	a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal	1e-30
d1s29a_	92	a.4.5.46 (A:) Lupus La autoantigen N-terminal doma	5e-27

>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: La-related protein 4 LARP4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 8e-33
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 4/84 (4%)

Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
           LK  + KQ+E+ FS ENL  D YLIS MD+  ++PI  +A+ + +K+++TD   IL+ L+
Sbjct: 7   LKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLR 66

Query: 359 NSSTVE--AQGDKVRRRDEWSKWI 380
           +S  V+   +G+KVR      + I
Sbjct: 67  SSPMVQVDEKGEKVRPSH--KRCI 88

>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: Lupus La autoantigen N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (283), Expect = 1e-30
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
           AL+A I  QIEYYF D NL  D +L   +   +GWVP+ I+  F R+ R++TD   I++A
Sbjct: 8   ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 67

Query: 357 LQNSST--VEAQGDKVRRRDEWSKWIPASVEQ 386
           L  S    +E   DK + R   SK +P   ++
Sbjct: 68  LSKSKAELMEISEDKTKIRRSPSKPLPEVTDE 99

>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: Lupus La autoantigen N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

 Score =  102 bits (256), Expect = 5e-27
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 294 PETLALKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLP 351
           P +   K  + KQ+E+YFSD N+Q D +L   M  +A+G+V +  +  FKRV  ++TD+ 
Sbjct: 5   PLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVK 64

Query: 352 FILDALQNSSTVEAQGD--KVRRRD 374
            +++A++ S  +    D   VRRRD
Sbjct: 65  EVVEAIRPSEKLVLSEDGLMVRRRD 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	563
d1s29a_	92	Lupus La autoantigen N-terminal domain {Trypanosom	99.95
d2cqka1	88	La-related protein 4 LARP4 {Human (Homo sapiens) [	99.95
d1zh5a1	99	Lupus La autoantigen N-terminal domain {Human (Hom	99.94
d1wfxa_	180	Probable RNA 2'-phosphotransferase KptA {Aeropyrum	90.69

>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: Lupus La autoantigen N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.95  E-value=4.2e-29  Score=213.00  Aligned_cols=80  Identities=38%  Similarity=0.613  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhhhhcCCCCcCcchHHHHhh--cCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eeec
Q 008506          297 LALKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVRR  372 (563)
Q Consensus       297 ~~L~~~I~kQIEYYFSDeNL~kD~FLRk~M--D~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVRR  372 (563)
                      .++.++|++||||||||+||++|.||+++|  +.||||+|++|++|+|||+|+.|+++|++||+.|..|||++|  +|||
T Consensus         8 ~e~~~~I~~QvEfYFSd~NL~~D~fL~~~m~~~~~G~V~i~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR   87 (92)
T d1s29a_           8 SENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRR   87 (92)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEE
T ss_pred             HHHHHHHHHHHHHHccHhhhccCHHHHHHHhccCCCcEEhHHHhcCcCHHHhcCCHHHHHHHHhhCCeEEEeCCCCEEee
Confidence            578999999999999999999999999999  789999999999999999999999999999999999999865  8999


Q ss_pred             CCCC
Q 008506          373 RDEW  376 (563)
Q Consensus       373 R~~w  376 (563)
                      |.+.
T Consensus        88 k~pl   91 (92)
T d1s29a_          88 RDPL   91 (92)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9764

>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: La-related protein 4 LARP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-29  Score=211.96  Aligned_cols=84  Identities=39%  Similarity=0.633  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHhhhhcCCCCcCcchHHHHhhcCCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCCceEEcCC--eeec
Q 008506          295 ETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD--KVRR  372 (563)
Q Consensus       295 e~~~L~~~I~kQIEYYFSDeNL~kD~FLRk~MD~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~~VEV~~d--KVRR  372 (563)
                      ..++|.++|++||||||||+||++|.||+++|++||||||++|++|||||+||.|+++|++||+.|..|||++|  +|||
T Consensus         3 ~~~~l~~~i~~QvEfYFSd~NL~~D~fL~~~m~~~G~V~l~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~~d~~~VRr   82 (88)
T d2cqka1           3 STEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRP   82 (88)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEEEE
T ss_pred             ChHHHHHHHHHHHHhhCCHhhhCcCHHHHHhhcCCCCEEhHHHhcChHHHHHcCCHHHHHHHHhcCCeEEEeCCCCEecc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999865  7887


Q ss_pred             CCCCCccc
Q 008506          373 RDEWSKWI  380 (563)
Q Consensus       373 R~~w~kwv  380 (563)
                      |+  ++||
T Consensus        83 ~~--~r~i   88 (88)
T d2cqka1          83 SH--KRCI   88 (88)
T ss_dssp             CC--SCCC
T ss_pred             CC--CCCC
Confidence            65  5664

>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: Lupus La autoantigen N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-28  Score=208.81  Aligned_cols=86  Identities=43%  Similarity=0.745  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHhhhhcCCCCcCcchHHHHhhc-CCCcEehhhhhcchhHhhhcCCHHHHHHHHhcCC--ceEEcCC--e
Q 008506          295 ETLALKANIVKQIEYYFSDENLQNDHYLISLMD-AQGWVPIAIIADFKRVKRMSTDLPFILDALQNSS--TVEAQGD--K  369 (563)
Q Consensus       295 e~~~L~~~I~kQIEYYFSDeNL~kD~FLRk~MD-~dG~VPIslIasFnRVK~LT~Di~lI~eALr~S~--~VEV~~d--K  369 (563)
                      +.+.|.++|++||||||||+||++|.|||++|+ +||||||++|++|+|||+|+.|+++|++||+.|.  .|||++|  +
T Consensus         5 ~~~~l~~~I~~QvEfYFSd~NL~~D~fL~~~m~~~eG~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~S~~~~lev~~d~~~   84 (99)
T d1zh5a1           5 KMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTK   84 (99)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHTTTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSE
T ss_pred             HHHHHHHHHHHHHHHhcCHhhhccCHHHHHHHhcCCCcccHHHHhcchHHHHHcCCHHHHHHHHHhCCCCeEEEcCCCce
Confidence            346899999999999999999999999999998 5999999999999999999999999999999997  4999876  5


Q ss_pred             eecCCCCCccccc
Q 008506          370 VRRRDEWSKWIPA  382 (563)
Q Consensus       370 VRRR~~w~kwv~~  382 (563)
                      |||+  |.+|++.
T Consensus        85 vRR~--~~~plpe   95 (99)
T d1zh5a1          85 IRRS--PSKPLPE   95 (99)
T ss_dssp             EEEC--TTSCCCC
T ss_pred             eCCC--CCCCCCC
Confidence            6664  6667653

>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Tpt1/KptA
domain: Probable RNA 2'-phosphotransferase KptA
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.69  E-value=0.13  Score=46.52  Aligned_cols=53  Identities=17%  Similarity=0.245  Sum_probs=41.4

Q ss_pred             hhcCCCcEehhhhhcchhHhhhc-CCHHHHHHHHhcCC--ceEEcCCeeecCCCCC
Q 008506          325 LMDAQGWVPIAIIADFKRVKRMS-TDLPFILDALQNSS--TVEAQGDKVRRRDEWS  377 (563)
Q Consensus       325 ~MD~dG~VPIslIasFnRVK~LT-~Di~lI~eALr~S~--~VEV~~dKVRRR~~w~  377 (563)
                      .||.||||+|+.|+...+.+.+. .+.+.|.+.+++.+  -.|+.+++||......
T Consensus        21 ~~d~~G~v~v~dLl~~~~~~~~~~~~~~~i~~iV~~d~K~Rfel~~~~IRA~qGHS   76 (180)
T d1wfxa_          21 RLTREGWARVSEVVEGLRKAGWSWVEEWHIVGVALHDPKGRYELRNGEIRARYGHS   76 (180)
T ss_dssp             CCCTTCCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHCSSCCEEEETTEEEESSCCS
T ss_pred             CcCCCCCEEHHHHHHHHHHcCCCcCcHHHHHHHHhcCCcccceecCCEEEeecCCC
Confidence            46899999999999877766554 45777888887765  4788899999887654