Citrus Sinensis ID: 008511

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---

MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEWIAFYKFELVCF

ccccccccccccHHHHHHccccccHHHHHcccHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHccccccccHHcccccHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHcccccccHHcHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccc

ccEEccccccccHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccEcc

mfwrmaglstaspvetildkenftleelldedDIIQECKALNGRLINFLRERAQVEQLIQYIVVEapedaekrrtfkfpfvaceiFTCEVDIILKTLVEDEELMNLLFSflepkdshstllAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDkfsssdspevhANAAETLCSItrsappalaakisspnFIGRLFRHalensrpksvLVNSLSICIslldpkrltlgTYYMFNrqlthgstvtvnpetveGMLGRLGDLLKLLDVSSEESSLLTtygklqpplgkhrLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFfeypynnflhhHVENIILSClecknaplIEHLLHECNLVGKILEAeknftlkdsnkptvpaegrlpprignighLTRISNKLIQLGNNNSEIHAYLQensewndwQINVLSKRNTLENIYQwacgrptalhdrgrdsddddyqnrdYDVAALANNLSQAfrygiysnddvdeaqgslerddeWIAFYKFELVCF

mfwrmaglstaspvetilDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVeapedaekrrTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRqlthgstvtvnPETVEGMLGRLGDLLKLLDVSSEESSLLTtygklqpplgkhrLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKnftlkdsnkptvpaegrlpprigNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEWIAFYKFELVCF

MFWRMAGLSTASPVETILDKENFTleelldeddIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMlgrlgdllklldvsseessllTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHdrgrdsddddyqnrdydVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEWIAFYKFELVCF

************PVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF**************TLCSIT*****ALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL****************RIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTAL**************RDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEWIAFYKFELVC*

MFWR***LSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLT********************PETVEGMLGRLGDLLK*LD******SLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFT***************PPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQW****************************ALANNLSQAF******************RDDEWIAFYKFELVCF

*********TASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF*********ANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEWIAFYKFELVCF

MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKR******YM********STVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNF****************PPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEWIAFYKFELVCF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		563	2.2.26 [Sep-21-2011]
Q922D4		844	Serine/threonine-protein	yes	no	0.841	0.561	0.307	2e-64
Q5F471		873	Serine/threonine-protein	yes	no	0.900	0.580	0.301	2e-64
Q8R3Q2		923	Serine/threonine-protein	no	no	0.781	0.476	0.317	3e-63
Q5H9R7		873	Serine/threonine-protein	yes	no	0.898	0.579	0.293	7e-63
O75170		966	Serine/threonine-protein	no	no	0.781	0.455	0.318	2e-62
Q9UPN7		881	Serine/threonine-protein	no	no	0.904	0.577	0.294	1e-61
Q7TSI3		856	Serine/threonine-protein	no	no	0.900	0.592	0.293	2e-60
Q6NRF1		850	Serine/threonine-protein	N/A	no	0.843	0.558	0.295	4e-58
Q6NRI0		852	Serine/threonine-protein	N/A	no	0.843	0.557	0.293	2e-57
O74511		838	Extragenic suppressor of	yes	no	0.607	0.408	0.256	1e-22

>sp\|Q922D4\|PP6R3_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus GN=Ppp6r3 PE=1 SV=1	Back alignment and function desciption

 Score =  247 bits (631), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/526 (30%), Positives = 288/526 (54%), Gaps = 52/526 (9%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQ 60
           MFW+   L ++S ++T+L++E+ TL+EL+DE+D++QECKA N +LI FL +   +E L+ 
Sbjct: 1   MFWKF-DLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 61  YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
           +I+ E P+D +++  +K+P ++CE+ T +V  +   L EDE L+  L+SFL  +   + L
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPL 119

Query: 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
           LA +FSKV+  L+ RK   ++ ++K  ++ +  ++  IG ++IM++L+RL+   E     
Sbjct: 120 LASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPR 179

Query: 181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR------------SAPPAL 228
             + + W+ +  +++ +V+    S   + H+NA+++LC I R            + P  L
Sbjct: 180 -QDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPL 238

Query: 229 AAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTL-GTYYMFNRQLTHGS 287
            A +     I +L  +     + +S +V+++ I ++LL+ +R T  G   +    ++H S
Sbjct: 239 LATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSH-S 297

Query: 288 TVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTV 347
             +VN   +E + GRLG   +LL    ++S + TT+G L PP+G  RL ++  IS LL  
Sbjct: 298 ACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQT 357

Query: 348 GSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC--KNAP--------- 396
            + +   +L+   ++  ILD+FF+Y +NNFLH  VE  I   L    +NA          
Sbjct: 358 NTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDS 417

Query: 397 -----LIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKL 451
                L++HL  +C L+ +ILEA       D+N+      GR   R G +GHLTRI+N +
Sbjct: 418 TGDNLLLKHLFQKCQLIERILEA------WDTNEKKQAEGGR---RHGYMGHLTRIANCI 468

Query: 452 IQ---LGNNNSEIHAYLQE-----NSEWNDWQINVL---SKRNTLE 486
           +     G N++ +   +++        W  +  N L   +KRNT++
Sbjct: 469 VHSTDKGPNSALVQQLIKDLPDEVRERWETFCTNSLGETNKRNTVD 514

Regulatory subunit of protein phosphatase 6 (PP6). May function as a scaffolding PP6 subunit. May have an important role in maintaining immune self-tolerance.
Mus musculus (taxid: 10090)

>sp\|Q5F471\|PP6R3_CHICK Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus GN=PPP6R3 PE=2 SV=1	Back alignment and function description

>sp\|Q8R3Q2\|PP6R2_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Mus musculus GN=Ppp6r2 PE=1 SV=1	Back alignment and function description

>sp\|Q5H9R7\|PP6R3_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=1 SV=2	Back alignment and function description

>sp\|O75170\|PP6R2_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Homo sapiens GN=PPP6R2 PE=1 SV=2	Back alignment and function description

>sp\|Q9UPN7\|PP6R1_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Homo sapiens GN=PPP6R1 PE=1 SV=5	Back alignment and function description

>sp\|Q7TSI3\|PP6R1_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Mus musculus GN=Ppp6r1 PE=1 SV=1	Back alignment and function description

>sp\|Q6NRF1\|P6R3B_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-B OS=Xenopus laevis GN=ppp6r3-b PE=2 SV=1	Back alignment and function description

>sp\|Q6NRI0\|P6R3A_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-A OS=Xenopus laevis GN=ppp6r3-a PE=2 SV=1	Back alignment and function description

>sp\|O74511\|EKC1_SCHPO Extragenic suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ekc1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		563
255564407		783	conserved hypothetical protein [Ricinus	0.984	0.707	0.859	0.0
356532415		881	PREDICTED: serine/threonine-protein phos	0.985	0.629	0.794	0.0
297740815		785	unnamed protein product [Vitis vinifera]	0.962	0.690	0.860	0.0
359483671		786	PREDICTED: serine/threonine-protein phos	0.962	0.689	0.860	0.0
356558055		838	PREDICTED: serine/threonine-protein phos	0.985	0.662	0.787	0.0
449433551		769	PREDICTED: serine/threonine-protein phos	0.984	0.720	0.812	0.0
357448461		794	Serine/threonine protein phosphatase 6 r	0.985	0.698	0.750	0.0
42562411		811	SIT4 phosphatase-associated-like protein	0.984	0.683	0.781	0.0
449490607		772	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.984	0.717	0.803	0.0
297845982		816	SIT4 phosphatase-associated family prote	0.976	0.674	0.785	0.0

>gi\|255564407\|ref\|XP_002523200.1\| conserved hypothetical protein [Ricinus communis] gi\|223537607\|gb\|EEF39231.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/556 (85%), Positives = 513/556 (92%), Gaps = 2/556 (0%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQ 60
           MFWRMAGLSTASPVETILDKENFTLEELLDED+IIQECKALNGRLINFLRERAQVEQLI+
Sbjct: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDEIIQECKALNGRLINFLRERAQVEQLIR 60

Query: 61  YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
           YI+ EAPEDAEKRRTFKFPF+ACEIFTCEVDIILKTLVEDEELMNLLFSFLEP  +HSTL
Sbjct: 61  YIIEEAPEDAEKRRTFKFPFIACEIFTCEVDIILKTLVEDEELMNLLFSFLEPTQTHSTL 120

Query: 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
           LAGYFSKVVICLLLRKT+P MHYIKAHQ+I+ +LVDLIGITSIMEVLIRLIGADEHMYT+
Sbjct: 121 LAGYFSKVVICLLLRKTIPFMHYIKAHQQILNQLVDLIGITSIMEVLIRLIGADEHMYTS 180

Query: 181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGR 240
           + ++MQWIE+T+VLEMIVDKFSSSDSPEVHAN AETLC+ITR APP LAAKISSPNFIGR
Sbjct: 181 YMDAMQWIEETDVLEMIVDKFSSSDSPEVHANTAETLCAITRFAPPGLAAKISSPNFIGR 240

Query: 241 LFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML 300
           LFRHALE SRPKSVLVNSLSICISLLDPKRLTLG+Y+ +NRQL HGSTVTV+PETVEGML
Sbjct: 241 LFRHALEESRPKSVLVNSLSICISLLDPKRLTLGSYHTYNRQLNHGSTVTVSPETVEGML 300

Query: 301 GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHG 360
             LGDLLKLLDV+S E+ LLTTYGKLQPPLGKHRLKIVEFISVLL+VGSEAAEKELI+ G
Sbjct: 301 DSLGDLLKLLDVASTENILLTTYGKLQPPLGKHRLKIVEFISVLLSVGSEAAEKELIQLG 360

Query: 361 AVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL 420
           AV+RILDLFFEYPYNNFLHHHVENII SCLE K A LI+HLL ECNLVGKILEAEKN TL
Sbjct: 361 AVQRILDLFFEYPYNNFLHHHVENIIFSCLESKLAVLIQHLLRECNLVGKILEAEKNSTL 420

Query: 421 -KDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVL 479
             D+ KPT+PA+ R PPRIGNIGHLTRISNKLIQLGNNN +I A LQENSEW DW  NVL
Sbjct: 421 AADTGKPTLPADARPPPRIGNIGHLTRISNKLIQLGNNNGDILACLQENSEWTDWHANVL 480

Query: 480 SKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDV 539
           +KRN +EN+YQWACGRPTALH   RDSDDDDYQ+RDYDVAALANNLSQAFRYGIY NDDV
Sbjct: 481 TKRNAVENVYQWACGRPTALH-DRRDSDDDDYQDRDYDVAALANNLSQAFRYGIYGNDDV 539

Query: 540 DEAQGSLERDDEWIAF 555
           DE  GSLERDDE + F
Sbjct: 540 DEVHGSLERDDEDVYF 555

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356532415\|ref\|XP_003534768.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|297740815\|emb\|CBI30997.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359483671\|ref\|XP_002281685.2\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356558055\|ref\|XP_003547324.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449433551\|ref\|XP_004134561.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357448461\|ref\|XP_003594506.1\| Serine/threonine protein phosphatase 6 regulatory subunit [Medicago truncatula] gi\|355483554\|gb\|AES64757.1\| Serine/threonine protein phosphatase 6 regulatory subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|42562411\|ref\|NP_174335.4\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] gi\|332193102\|gb\|AEE31223.1\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449490607\|ref\|XP_004158654.1\| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297845982\|ref\|XP_002890872.1\| SIT4 phosphatase-associated family protein [Arabidopsis lyrata subsp. lyrata] gi\|297336714\|gb\|EFH67131.1\| SIT4 phosphatase-associated family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		563
TAIR\|locus:2028185		811	AT1G30470 "AT1G30470" [Arabido	0.984	0.683	0.717	9.6e-215
TAIR\|locus:2205185		802	AT1G07990 "AT1G07990" [Arabido	0.978	0.687	0.586	2.3e-174
TAIR\|locus:2057507		788	AT2G28360 "AT2G28360" [Arabido	0.971	0.694	0.565	2e-166
UNIPROTKB\|Q9UPN7		881	PPP6R1 "Serine/threonine-prote	0.476	0.304	0.294	8.8e-56
MGI\|MGI:2442163		856	Ppp6r1 "protein phosphatase 6,	0.476	0.313	0.301	1.4e-55
MGI\|MGI:1918724		923	Ppp6r2 "protein phosphatase 6,	0.685	0.418	0.302	1.5e-55
UNIPROTKB\|F1RMN3		880	PPP6R1 "Uncharacterized protei	0.476	0.304	0.290	5.2e-55
UNIPROTKB\|G3X7E2		834	PPP6R2 "Uncharacterized protei	0.683	0.461	0.299	1.6e-53
UNIPROTKB\|O75170		966	PPP6R2 "Serine/threonine-prote	0.685	0.399	0.300	2.5e-53
RGD\|1311409		859	Ppp6r1 "protein phosphatase 6,	0.476	0.311	0.301	5.1e-53

TAIR\|locus:2028185 AT1G30470 "AT1G30470" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2075 (735.5 bits), Expect = 9.6e-215, P = 9.6e-215
 Identities = 401/559 (71%), Positives = 461/559 (82%)

Query:     1 MFWRMAGLSTASPVETILDKENFTXXXXXXXXXIIQECKALNGRLINFLRERAQVEQLIQ 60
             MFWRMAGLSTAS VE ILDK++FT         IIQECKALNGRL+NFLRE+ QVEQLI+
Sbjct:     1 MFWRMAGLSTASAVEAILDKDSFTLEDLLDEDEIIQECKALNGRLLNFLREKVQVEQLIR 60

Query:    61 YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
             YI+ E  ED EK+RTFKFPF+ACEIFTCE+++ILKTLVEDEELM LLFSFLE K++H++L
Sbjct:    61 YIIEEPLEDVEKKRTFKFPFIACEIFTCEIEMILKTLVEDEELMLLLFSFLEAKETHNSL 120

Query:   121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
             LAGYFSKVVICLL+RKT+P M +IK HQEI+ +LVDLIGITSIMEVL RL+G DEH+Y+N
Sbjct:   121 LAGYFSKVVICLLVRKTIPFMQFIKDHQEILKQLVDLIGITSIMEVLKRLVGTDEHLYSN 180

Query:   181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGR 240
             +T +MQWIEDT+VLEMIVDKF SS+SPEVHANAAE LC++ R APP LA K+SSP+  GR
Sbjct:   181 YTSAMQWIEDTDVLEMIVDKFGSSESPEVHANAAEILCTVARYAPPGLATKLSSPSCTGR 240

Query:   241 LFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMX 300
             L +H LE+SRPKSVLVNSLS+CISLLDPKR TLGTY+++ RQLTHGS VT NPETVEGM 
Sbjct:   241 LLKHTLEDSRPKSVLVNSLSVCISLLDPKRFTLGTYHIYGRQLTHGSMVT-NPETVEGML 299

Query:   301 XXXXXXXXXXXXXXXXXXXXTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHG 360
                                 TTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKE+IR G
Sbjct:   300 GSLGDLLMLLNVSSAEGVLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLG 359

Query:   361 AVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL 420
             AV+R+LDLFFEYPYNNFLHHHVEN+ILSC+E KN+ L++HLL ECNL+G ILEAEK+ TL
Sbjct:   360 AVKRVLDLFFEYPYNNFLHHHVENVILSCMESKNSQLVDHLLSECNLIGSILEAEKDSTL 419

Query:   421 K--DSNK--PTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQI 476
                DS+K  PTVPAEG+ P RIGNIGHLTRISNKL+QL N+N EI ++LQENS+W DWQ 
Sbjct:   420 TAGDSDKLQPTVPAEGKKPLRIGNIGHLTRISNKLLQLANSNVEIQSHLQENSKWVDWQT 479

Query:   477 NVLSKRNTLENIYQWACGRPTALHXXXXXXXXXXXXXXXXXVAALANNLSQAFRYGIYSN 536
             +VLSKRNTLEN+Y WACGRPT+LH                 VAALANNLSQAFRYGIYSN
Sbjct:   480 DVLSKRNTLENVYSWACGRPTSLHDRSRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSN 539

Query:   537 DDVDEAQGSLERDDEWIAF 555
             DD+DEAQGS+ERDDE + F
Sbjct:   540 DDMDEAQGSMERDDEDVYF 558

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR\|locus:2205185 AT1G07990 "AT1G07990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2057507 AT2G28360 "AT2G28360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UPN7 PPP6R1 "Serine/threonine-protein phosphatase 6 regulatory subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2442163 Ppp6r1 "protein phosphatase 6, regulatory subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

MGI\|MGI:1918724 Ppp6r2 "protein phosphatase 6, regulatory subunit 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RMN3 PPP6R1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|G3X7E2 PPP6R2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|O75170 PPP6R2 "Serine/threonine-protein phosphatase 6 regulatory subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1311409 Ppp6r1 "protein phosphatase 6, regulatory subunit 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		563
pfam04499		380	pfam04499, SAPS, SIT4 phosphatase-associated prote	1e-79

>gnl\|CDD\|218113 pfam04499, SAPS, SIT4 phosphatase-associated protein	Back alignment and domain information

 Score =  254 bits (652), Expect = 1e-79
 Identities = 105/394 (26%), Positives = 183/394 (46%), Gaps = 48/394 (12%)

Query: 129 VICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWI 188
              LL RKT  ++ +I+  +  + + +  I   +IM++L++LI  ++      T  ++W+
Sbjct: 1   NENLLDRKTDEMLEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTEK--PELPTGIIEWL 58

Query: 189 EDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR------------SAPPALAAKISSPN 236
            +  ++  ++D  S     +V +NAA+ L +I                P  L  ++ S  
Sbjct: 59  NEQKLIPKLIDLLSPEYDSDVQSNAADFLKAIITISANQPLQLQSCIGPNELTRELVSEE 118

Query: 237 FIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETV 296
            + +L  + L+     S LVN + I I L+  K  +     ++    +H  +   +P  +
Sbjct: 119 SVEKLLDNMLDEEGNGSALVNGVGILIELIR-KNNSDYDEILYTTIESHPPS-ERDPIYL 176

Query: 297 EGMLG----RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLL------- 345
             +L      L D  +LL    ++  L TTYG L  PLG  R KIVE I+ LL       
Sbjct: 177 GSLLRLFSPHLPDFHQLLLNPPKKPLLTTTYGVLIEPLGFERFKIVELIAELLHCSNMGL 236

Query: 346 TVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEH 400
               +  + EL+    +  ILDLFF+YP+NNFLH+ VE+I+   L        N+ L+  
Sbjct: 237 LNVGDYLKIELVDLKIIPTILDLFFKYPWNNFLHNVVEDIVQQILNGPMDSGYNSFLVVD 296

Query: 401 LLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE 460
           L  +CNL  +ILE +     K+S++    A+G   PR+G +GHLT I+ ++++       
Sbjct: 297 LFTDCNLTQRILEGQ-----KESDE--FQAKGG--PRLGYMGHLTLIAEEVVKFSEKYPP 347

Query: 461 ------IHAYLQENSEWNDWQINVLSKRNTLENI 488
                 I   ++ N EW ++    L +     N+
Sbjct: 348 ELISPLIKEAVE-NEEWEEYVEETLEETRERYNV 380

This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes. Length = 380

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		563
KOG2073		838	consensus SAP family cell cycle dependent phosphat	100.0
PF04499		475	SAPS: SIT4 phosphatase-associated protein; InterPr	100.0
KOG2073		838	consensus SAP family cell cycle dependent phosphat	98.88
PF04499		475	SAPS: SIT4 phosphatase-associated protein; InterPr	92.57
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	92.55
PF05804		708	KAP: Kinesin-associated protein (KAP)	83.59

>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=5.7e-104  Score=882.34  Aligned_cols=554  Identities=38%  Similarity=0.618  Sum_probs=513.4

Q ss_pred             CCcCCCCCCCCChhhhhhcCCCCCHHHhhCCchHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcCCCCchHhhhcccccc
Q 008511            1 MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPF   80 (563)
Q Consensus         1 MFW~~~g~~~~s~ld~lL~k~~~tLeelLdeddllqE~k~~N~kLi~fL~~~~~l~~Li~yi~~e~~e~~~~~~~~Kyp~   80 (563)
                      |||++ +...++.++.+|+++.+||+++|||++++||||++|.||++||++|+++++|+.||+.+|++|.++|++||||+
T Consensus         1 ~f~~~-~~~~~~~~e~~l~~~~~~l~elldeed~~~e~~~~n~~l~~~l~~~e~~~~l~~~I~~e~~~d~D~k~~f~~p~   79 (838)
T KOG2073|consen    1 MFWDF-DLESSAEIELLLEKESDTLDELLDEEDILQECKLQNSKLLNFLKRPEVLEKLVEYIIEEPEEDADKKTRFKYPN   79 (838)
T ss_pred             Ccccc-ccchhHHHHHhcccchhHHHHhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhcCCCcccchhhhhcccc
Confidence            89999 68888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccchHHHHHHhhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc
Q 008511           81 VACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI  160 (563)
Q Consensus        81 iasEILs~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~  160 (563)
                      |+||||||++|+|.++|++|+++|.+|||||+.+.|+||++++||+|+++.|+.|++.+++.|+++++++|+.|++||++
T Consensus        80 i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~  159 (838)
T KOG2073|consen   80 ISCEILTSDVWPISEALVEDESLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHIDI  159 (838)
T ss_pred             HHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhccccccccchhhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhc-----CchhHHhhcCCh
Q 008511          161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS-----APPALAAKISSP  235 (563)
Q Consensus       161 ~~I~dlLlrLI~~de~~~~~~~~~~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~-----~p~~L~~~L~s~  235 (563)
                      ++|||||+|+++||++.++. +++++||+++++|+||+++++|+.++++|+||+++||+|+++     ||++|+++|+||
T Consensus       160 stlMD~Llkli~~de~~~p~-~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~  238 (838)
T KOG2073|consen  160 STLMDFLLKLISTDEPESPR-TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP  238 (838)
T ss_pred             cHHHHHHHHhccccCCCCch-HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence            99999999999999999864 999999999999999999999999999999999999999999     999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcceecchhhhhecccCccccccch--h-hhhhccccCCCccccCccchHHHHhhHHHHHHhhcc
Q 008511          236 NFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT--Y-YMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV  312 (563)
Q Consensus       236 e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll~~~~~~~~~--~-~~~~~~~~~~~~~~~~p~~~~~il~~l~~l~~lL~~  312 (563)
                      ++|++|+++||+++.++|++|+||+|+|+++.++|.....  | ..+..+..+ ....+.+.++++|.+||++|+++|.+
T Consensus       239 e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~-~d~~~~~~~l~~~~p~L~dF~~lL~~  317 (838)
T KOG2073|consen  239 ETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSE-RDPIVLNELLGAMEPRLGDFVQLLLE  317 (838)
T ss_pred             HHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccc-cCccchHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999876543  2 222222111 11234567788999999999999999


Q ss_pred             CccccccccccCcccCCCchhhHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHhc-
Q 008511          313 SSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE-  391 (563)
Q Consensus       313 ~~~~~~l~tt~G~~~~PLG~~RLkiveLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il~-  391 (563)
                      ++..+.++||||+++||||++|||||||||+||||+++.+.++++..+++...+|+||+||||||||++|+.||..++. 
T Consensus       318 ~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~  397 (838)
T KOG2073|consen  318 PEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSD  397 (838)
T ss_pred             CccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhc
Confidence            9988899999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             --------CCChHHHHHHhhhCchHHHHHHhhhccccc--CCCCCCCCCCCCCCCCCchHHHHHHHH-HHHHHhc---CC
Q 008511          392 --------CKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNKPTVPAEGRLPPRIGNIGHLTRIS-NKLIQLG---NN  457 (563)
Q Consensus       392 --------~~~~~L~~~Lf~~~~li~~Il~~~~~~~~~--~~n~~~~~~~~~~~~r~GYmGhLt~IA-n~i~~~~---~~  457 (563)
                              +.+..++.|++++|+++++|+++|+++...  ...+++..+.|+...|.|||||++|+| |.++++.   +.
T Consensus       398 ~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~R~~pn~~vq~~~~~~~  477 (838)
T KOG2073|consen  398 ETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLTRIAPNVGDQLKIKLED  477 (838)
T ss_pred             cccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceeeecCcchhhhccccccc
Confidence                    788999999999999999999999977654  223567778876557999999999999 9999964   47


Q ss_pred             cHHHHHHHhc--chhHHHHHHHHhh------hhccchhhhhccCC-CCCccCCCCCCCCchhccCCcccHHHHhhhhhhh
Q 008511          458 NSEIHAYLQE--NSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQNRDYDVAALANNLSQA  528 (563)
Q Consensus       458 ~~~i~~~l~~--~~~W~~f~~~~L~------~~N~~e~~~~~~~G-~p~~~~~~~~~~dddd~~~~~~~~~~~~~~~~~~  528 (563)
                      ...|++.|+.  +..|..|...++.      ++|+++++|.|.|| +++..+|+.+..|++++.+|+|++.+.+.++.++
T Consensus       478 ~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~d~~~~~~~~~~~i~~~  557 (838)
T KOG2073|consen  478 TNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKADRDYDVMGHLDNIADH  557 (838)
T ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhccccccchhhhhHhhhh
Confidence            7889999994  5788888877775      89999999999999 5999999999999998899999999999999998


Q ss_pred             -hhhccccCCCchhcccCCCCCcccccccccc
Q 008511          529 -FRYGIYSNDDVDEAQGSLERDDEWIAFYKFE  559 (563)
Q Consensus       529 -~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (563)
                       |+|.++.+....++++..++  +..|||||.
T Consensus       558 ~F~~~~de~~~~~e~~~~~~~--~~q~~~dE~  587 (838)
T KOG2073|consen  558 NFSINIDENSPNAEDLEVEDR--LIQYFDDEK  587 (838)
T ss_pred             hccccccccCchhhhhhhhcc--ccccccccc
Confidence             99999999999999999999  999999974

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []	Back alignment and domain information

>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		563
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 73/464 (15%), Positives = 149/464 (32%), Gaps = 101/464 (21%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDED---------DIIQECKALNGRLINFLRE 51
           +FW    L   +  ET+L+     L   +D +         +I     ++   L   L+ 
Sbjct: 184 IFW--LNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 52  RAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIF--TCEVDII--LKTLVEDEELMNLL 107
           +     L+   V+   ++A+    F     +C+I   T    +   L         ++  
Sbjct: 241 KPYENCLL---VLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 108 FSFLEPKDSHSTLLAGYFSKVVICL--LLRKTVPLMHYI--KAHQEIMARL-----VDLI 158
              L P +  S LL  Y       L   +  T P    I  ++ ++ +A       V+  
Sbjct: 295 SMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 159 GITSIMEVLIRLIGADE--HMYTNFTESMQWI--EDTN----VLEMIVDKFSSSDSPEVH 210
            +T+I+E  + ++   E   M+   +     +     +    +L +I      SD   V 
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIWFDVIKSDVMVV- 407

Query: 211 ANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKR 270
                 L     S    L  K         +   ++            L + + L +   
Sbjct: 408 ---VNKLHK--YS----LVEKQPKE---STISIPSI-----------YLELKVKLENEYA 444

Query: 271 L--TLGTYYMFNRQLTHGSTVTVNPETVEG-MLGRLGDLLKLLDVSSEESSLLTT----Y 323
           L  ++  +Y   +       +   P  ++      +G  LK ++   E  +L       +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLI---PPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDF 500

Query: 324 GKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIR--HGAVRRILDLFFEYPYNNFLHHH 381
             L+  +           S+L T+      K  I        R+++        +FL   
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-----ILDFLPKI 555

Query: 382 VENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNK 425
            EN+I S          ++     +L+   L AE     ++++K
Sbjct: 556 EENLICS----------KY----TDLLRIALMAEDEAIFEEAHK 585

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		563
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	94.06
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	91.62
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	87.42
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	82.54

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

Probab=94.06  E-value=5.1  Score=42.55  Aligned_cols=237  Identities=16%  Similarity=0.135  Sum_probs=129.4

Q ss_pred             HHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc--chHHHHHHHHhccccccccc
Q 008511          103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGADEHMYTN  180 (563)
Q Consensus       103 ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~--~~I~dlLlrLI~~de~~~~~  180 (563)
                      .+..|...|...  -++.....-+.++..|...++..-....   .+.+..|++.+..  +.+..-.+..+..--..   
T Consensus       203 ~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~---~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---  274 (528)
T 4b8j_A          203 ALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQPSFEQT---RPALPALARLIHSNDEEVLTDACWALSYLSDG---  274 (528)
T ss_dssp             CHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCCCHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---
T ss_pred             cHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCCcHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---
Confidence            456677777433  2444555566677777766543322222   4456666655533  23333222222211110   


Q ss_pred             hhhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceecchhh
Q 008511          181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLS  260 (563)
Q Consensus       181 ~~~~~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~  260 (563)
                      .....+.+.+.++++.|+..|... ++.+...|+..|..|....+ .....+.....+..|+..+-.... ..+-..++.
T Consensus       275 ~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~A~~  351 (528)
T 4b8j_A          275 TNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLK-KSIKKEACW  351 (528)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCC-HHHHHHHHH
T ss_pred             CHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCc-HHHHHHHHH
Confidence            122334566778999999988754 57888899999988876432 333334445555555554433211 122222222


Q ss_pred             hhecccCccccccchhhhhhccccCCCccccCccchHHHH--hhHHHHHHhhccCccccccccccCcccCCCchhhHHHH
Q 008511          261 ICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIV  338 (563)
Q Consensus       261 Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~il--~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkiv  338 (563)
                      ++-.+..                       ..++....++  .-++.++++|..+.                ...|..++
T Consensus       352 ~L~nl~~-----------------------~~~~~~~~~~~~~~i~~L~~lL~~~~----------------~~v~~~a~  392 (528)
T 4b8j_A          352 TISNITA-----------------------GNKDQIQAVINAGIIGPLVNLLQTAE----------------FDIKKEAA  392 (528)
T ss_dssp             HHHHHHT-----------------------SCHHHHHHHHHTTCHHHHHHHHHHSC----------------HHHHHHHH
T ss_pred             HHHHHHC-----------------------CCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHHHH
Confidence            2222211                       0122222222  13455666664321                13577889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHhc
Q 008511          339 EFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE  391 (563)
Q Consensus       339 eLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il~  391 (563)
                      ..+..|...+++.....+++.|+++.++++.-.  -+.-+...+..++..++.
T Consensus       393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC--PDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHH
Confidence            999999888777777888999999999998765  244455555566666553

PyMOL of 4b8j

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		563
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.71
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	81.54
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	81.19

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.71  E-value=5  Score=38.09  Aligned_cols=77  Identities=13%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHhc----CCChHHHHHHhhhCchH
Q 008511          333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE----CKNAPLIEHLLHECNLV  408 (563)
Q Consensus       333 ~RLkiveLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il~----~~~~~L~~~Lf~~~~li  408 (563)
                      .|-..+..+..+....+......+.+.|+++.+++++ +.+=...... ...++..+++    .....-....|.++.++
T Consensus       330 v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll-~~~d~~~~~~-~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~  407 (434)
T d1q1sc_         330 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV-ILDAISNIFQAAEKLGETEKLSIMIEECGGL  407 (434)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHT-TSSCHHHHHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHcCCH
Confidence            5778888888888877766667789999999999876 3442223333 3334444442    23444556667777777


Q ss_pred             HHH
Q 008511          409 GKI  411 (563)
Q Consensus       409 ~~I  411 (563)
                      +.|
T Consensus       408 ~~i  410 (434)
T d1q1sc_         408 DKI  410 (434)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

PyMOL of d1q1sc_

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure