Citrus Sinensis ID: 008565
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M1I2 | 555 | Probable peptide/nitrate | yes | no | 0.935 | 0.945 | 0.576 | 0.0 | |
| Q0WP01 | 557 | Probable peptide/nitrate | no | no | 0.885 | 0.892 | 0.452 | 1e-130 | |
| Q0WSZ6 | 561 | Probable peptide/nitrate | no | no | 0.910 | 0.910 | 0.430 | 1e-130 | |
| Q9SK96 | 564 | Probable peptide/nitrate | no | no | 0.907 | 0.902 | 0.417 | 1e-125 | |
| Q8VZE2 | 557 | Probable peptide/nitrate | no | no | 0.910 | 0.917 | 0.419 | 1e-122 | |
| Q9C7U1 | 555 | Probable peptide/nitrate | no | no | 0.866 | 0.875 | 0.429 | 1e-122 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.893 | 0.871 | 0.417 | 1e-121 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.946 | 0.931 | 0.411 | 1e-120 | |
| Q9SK99 | 565 | Probable peptide/nitrate | no | no | 0.914 | 0.907 | 0.433 | 1e-120 | |
| Q9M331 | 602 | Probable peptide/nitrate | no | no | 0.909 | 0.847 | 0.397 | 1e-120 |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/546 (57%), Positives = 423/546 (77%), Gaps = 21/546 (3%)
Query: 30 SKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPL 89
+KGGWNAA+FII+VE+A+RFA+YGLA NLI +LTN L + TATAA+++N W+G+S +FP+
Sbjct: 12 TKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMFPI 71
Query: 90 LGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGH 149
LGAF+ADS LGRF T+LL+SFIY +G+V+L L+V+V+ R+ VFF ALY++AVGEGGH
Sbjct: 72 LGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVVARRMREKVFFMALYVMAVGEGGH 131
Query: 150 KPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGV 209
KPCV TFAADQF E N ++K AK+SFFN+WY+ IV +S AVL I++Q+ V W++GF +
Sbjct: 132 KPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGFSI 191
Query: 210 MAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHE 269
+AG++ +A+ IFLIGI +YRKQ PVGSPFT VAQV VA +KWR+S T R Y
Sbjct: 192 IAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLSST----RHHYGLCY 247
Query: 270 LDDDDKRTDIGQSKRT--IARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKL 327
++D+ + + S + +ARTNQ RFLDKA IIDEID ++ RNPWRLC++NQVEEVKL
Sbjct: 248 EEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEID-HNKNRNPWRLCTVNQVEEVKL 306
Query: 328 VIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVP 387
++RLIPIW+S +MF L QL+TFF KQGS M R+IG++F +PPA+ QS+VG++IL+ +P
Sbjct: 307 ILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIP 366
Query: 388 V-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSP 436
+ IT H SGIT LQRIG+GLF + M++ LVEAKR++ AR++GLIDSP
Sbjct: 367 LYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLIDSP 426
Query: 437 KAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFIN 496
K +VP+S WLLPQY+LV I DVF IVG+QELFYDQMPE MRSIGAA +IS++GVGSF++
Sbjct: 427 KEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSFVS 486
Query: 497 TGVIEVVEAITH---RSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVLE 553
TG+I V+ I+ WLV+NLNRAHLDY+YW++A L+A++LC +++IA F+YKK+ +
Sbjct: 487 TGIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVSLCFYLFIANHFLYKKLQD 546
Query: 554 DESKEE 559
+ E
Sbjct: 547 KDDDVE 552
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 250/552 (45%), Positives = 354/552 (64%), Gaps = 55/552 (9%)
Query: 29 SSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFP 88
SS GGW +A FII VE+A+RFAYYG++ NLI YLT L + TA AA +VN W G +S+ P
Sbjct: 29 SSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANVNAWSGTASLLP 88
Query: 89 LLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLA------------VSVIPLHYRKAVFF 136
LLGAFVADS+LGRF TIL +S +Y +G+ +L+L+ +S ++ FF
Sbjct: 89 LLGAFVADSFLGRFRTILAASALYIVGLGVLTLSAMIPSDCKVSNLLSSCSPRFQVITFF 148
Query: 137 TALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196
+ALY++A+ +GGHKPCVQ F ADQFDE+ P++ AKSSFFNWWY G+ FG + V Y
Sbjct: 149 SALYLVALAQGGHKPCVQAFGADQFDEKEPEECKAKSSFFNWWYFGMCFGTLTTLWVLNY 208
Query: 197 LQDNVGWAVGFGVMAGALALALAIFLIGIKRYR--KQAPVGSPFTTVAQVFVATARKWRV 254
+QDN+ WA+GFG+ A+ +AL + L+G YR + SPF + V+VA + W V
Sbjct: 209 IQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFVRIGNVYVAAVKNWSV 268
Query: 255 SETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPW 314
S LD +G + ++ L+KA++
Sbjct: 269 SA-------------LDVAAAEERLGLVSCSSSQQFSF--LNKALVAKNGS--------- 304
Query: 315 RLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASL 374
CS++++EE K V+RL PIWL+CL+++ + Q TFFTKQG+TM RSI +++ PA+L
Sbjct: 305 --CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATL 362
Query: 375 QSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKR 423
QS + LSI++ +P+ T GITMLQRIG G+F S L M+VAALVE KR
Sbjct: 363 QSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKR 422
Query: 424 VRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAA 483
++TA + GL+DSP A VP+S+WWL+PQY+L I DVF +VGLQE FYDQ+P +RS+G A
Sbjct: 423 LKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLA 482
Query: 484 AYISIIGVGSFINTGVIEVVEAITHR----SWLVDNLNRAHLDYFYWVLAGLSALNLCVF 539
Y+SI G+G+F+++ +I ++E T + SW +NLN+AHLDYFYW+LA LS + L +
Sbjct: 483 LYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGLASY 542
Query: 540 IWIAKRFVYKKV 551
+++AK +V K++
Sbjct: 543 LYVAKSYVSKRL 554
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/571 (43%), Positives = 366/571 (64%), Gaps = 60/571 (10%)
Query: 17 EHTENKVSHHKISSK----GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT 72
E+ + V H S++ G W AA FII VE+A+RFA YG+ NLI YLT L + TA
Sbjct: 12 EYVIDAVDHRGFSARRSITGRWRAAWFIIGVEVAERFANYGIGSNLISYLTGPLGQSTAV 71
Query: 73 AAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH--- 129
AA +VN W GIS+I PLLGAFVAD++LGR+ TI+++SFIY +G+ L+L+ +IP +
Sbjct: 72 AAANVNAWSGISTILPLLGAFVADAFLGRYITIIIASFIYVLGLAFLTLSAFLIPNNTEV 131
Query: 130 ------YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGI 183
+ A+FF +LY++A+G+ GHKPCVQ F ADQFDE+NP++ +SSFFNWWYL +
Sbjct: 132 TSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFGADQFDEKNPQENSDRSSFFNWWYLSM 191
Query: 184 VFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYR----KQAPVGSPFT 239
G A+LV +Y+Q+NV WA+GFG+ + ++L +F++G K YR +Q +PFT
Sbjct: 192 CAGIGLAILVVVYIQENVSWALGFGIPCVFMVISLVLFVLGRKSYRFSKTRQEEETNPFT 251
Query: 240 TVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAM 299
+ +VF + R++ + D + ++ ++ R+ +L FL+KA+
Sbjct: 252 RIGRVFFVAFKNQRLNSS---------------DLCKVELIEANRSQESPEELSFLNKAL 296
Query: 300 II----DEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQ 355
++ DE ++A + R+ VE+ ++RLIP+WL+ L ++ Q TFFTKQ
Sbjct: 297 LVPNDSDEGEVACKSRD---------VEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQ 347
Query: 356 GSTMRRSIGSNFQVPPASLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGI 404
G TM R+I ++PPASLQ L+ +SI++ VP+ IT GIT L+RIG
Sbjct: 348 GVTMERTIFPGVEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGT 407
Query: 405 GLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVG 464
G+ + LTM+VAALVE+KR+ TA+E GLID PK +P+SIWWL PQY+L+ + DV +VG
Sbjct: 408 GMVLATLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVG 467
Query: 465 LQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAIT----HRSWLVDNLNRAH 520
+QE FY Q+P +RS+G A Y+S +GVGS +++ +I +++ T SW NLNRAH
Sbjct: 468 MQEFFYSQVPTELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNLNRAH 527
Query: 521 LDYFYWVLAGLSALNLCVFIWIAKRFVYKKV 551
LDYFYW+LA +SA+ F++I+K ++Y++V
Sbjct: 528 LDYFYWLLAVVSAVGFFTFLFISKSYIYRRV 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SK96|PTR10_ARATH Probable peptide/nitrate transporter At1g22550 OS=Arabidopsis thaliana GN=At1g22550 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 240/575 (41%), Positives = 350/575 (60%), Gaps = 66/575 (11%)
Query: 17 EHTENKVSHHKI----SSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT 72
+ + V H + SS GGW +A +II VE+ +RFAY+G+ NLI YLT L + TAT
Sbjct: 13 DSVSDSVDHRGLPAGKSSTGGWRSAWYIIGVEVGERFAYFGIGSNLITYLTGPLGQSTAT 72
Query: 73 AAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF--------------MGMVL 118
AA +VN W G +SI P+LGAF+AD+YLGR+ TI+++S IY MG+
Sbjct: 73 AAVNVNTWSGTASILPVLGAFIADAYLGRYRTIVVASLIYILGLGLLTLSSILILMGLSE 132
Query: 119 L---SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSF 175
+ S P + +FF +LY++A+G+GGHKPCVQ F ADQFD +PK++ ++ SF
Sbjct: 133 QRQHNRNASAKPFFWVNILFFCSLYLVAIGQGGHKPCVQAFGADQFDVGDPKERISRGSF 192
Query: 176 FNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYR----KQ 231
FNWW+L + G + +++V +Y+QDNV WA+GFG+ + +ALA+FL G K YR +
Sbjct: 193 FNWWFLSLSAGITLSIIVVVYVQDNVNWALGFGIPCLFMVMALALFLFGRKTYRYPRGDR 252
Query: 232 APVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQ 291
+ F + +VF+ + ++ TH G + ++G K+ Q
Sbjct: 253 EGKNNAFARIGRVFLVAFKNRKLKLTHSG---------------QLEVGSYKKC---KGQ 294
Query: 292 LRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTF 351
L FL KA++ E + CS VE+ ++RLIPIW++ ++ + Q TF
Sbjct: 295 LEFLAKALLPGEGGVEP--------CSSRDVEDAMALVRLIPIWITSVVSTIPYAQYATF 346
Query: 352 FTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVP-----------VITGHRSGITMLQ 400
FTKQG T+ R I F++PPAS Q+L+GLSI ++VP +IT SGITMLQ
Sbjct: 347 FTKQGVTVDRKILPGFEIPPASFQALIGLSIFISVPTYERVFLPLARLITKKPSGITMLQ 406
Query: 401 RIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVF 460
RIG G+ S L M+VAALVE KR+ TA+E+GL+D P A +P+SIWW +PQYLL+ + DVF
Sbjct: 407 RIGAGMVLSSLNMVVAALVEMKRLETAKEHGLVDRPDATIPMSIWWFVPQYLLLGMIDVF 466
Query: 461 GIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHR----SWLVDNL 516
+VG QE FYDQ+P +RSIG A +S +G+ SF++ +I V+ T + SW NL
Sbjct: 467 SLVGTQEFFYDQVPTELRSIGLALSLSAMGLASFLSGFLITVINWATGKNGGDSWFNTNL 526
Query: 517 NRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKV 551
NRAH+DYFYW+LA +A+ F+ +++ +VY++V
Sbjct: 527 NRAHVDYFYWLLAAFTAIGFLAFLLLSRLYVYRRV 561
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/567 (41%), Positives = 358/567 (63%), Gaps = 56/567 (9%)
Query: 17 EHTENKVSHHKISSK----GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT 72
E+ + V H ++++ G W AA+FII VE+A+RFAYYG+ NLI YLT L E TA
Sbjct: 12 EYVTDAVDHRGLAARRSNTGRWRAALFIIGVEVAERFAYYGIGSNLISYLTGPLGESTAV 71
Query: 73 AAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIP----- 127
AA +VN W GI+++ P+LGAFVAD++LGR+ TI++SS IY +G+ L+L+ +IP
Sbjct: 72 AAANVNAWSGIATLLPVLGAFVADAFLGRYRTIIISSLIYVLGLAFLTLSAFLIPNTTEV 131
Query: 128 ----LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGI 183
+ +FF +LY++A+G+ GHKPCVQ F ADQFDE++ ++K +SSFFNWWYL +
Sbjct: 132 TSSTSSFLNVLFFFSLYLVAIGQSGHKPCVQAFGADQFDEKDSQEKSDRSSFFNWWYLSL 191
Query: 184 VFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIG--IKRY--RKQAPVGSPFT 239
G A+LV +Y+Q+ WA GFG+ + ++L +F+ G I RY R+ +PFT
Sbjct: 192 SAGICFAILVVVYIQEEFSWAFGFGIPCVFMVISLVLFVSGRRIYRYSKRRHEEEINPFT 251
Query: 240 TVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAM 299
+ +VF + R+S + +L + + K++ F +KA+
Sbjct: 252 RIGRVFFVALKNQRLSSS-----------DLCKVELEANTSPEKQS--------FFNKAL 292
Query: 300 IIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTM 359
++ + +S+ N + VE+ +IRLIP+W + L ++ Q TFFTKQG TM
Sbjct: 293 LVP--NDSSQGENA---SKSSDVEDATALIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTM 347
Query: 360 RRSIGSNFQVPPASLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFT 408
R+I ++PPASLQ +G+SI++ VP+ IT GIT L+RIG G+
Sbjct: 348 DRTILPGVKIPPASLQVFIGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRIGTGIVL 407
Query: 409 SILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQEL 468
S +TM++AALVE KR+ TA+E+GLID P+A +P+SIWWL+PQYLL+ + DV+ +VG+QE
Sbjct: 408 STITMVIAALVEFKRLETAKEHGLIDQPEATLPMSIWWLIPQYLLLGLADVYTLVGMQEF 467
Query: 469 FYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAIT----HRSWLVDNLNRAHLDYF 524
FY Q+P +RSIG A Y+S +GVGS +++ +I +++ T SW NLNRAHLDYF
Sbjct: 468 FYSQVPTELRSIGLALYLSALGVGSLLSSLLISLIDLATGGDAGNSWFNSNLNRAHLDYF 527
Query: 525 YWVLAGLSALNLCVFIWIAKRFVYKKV 551
YW+LA +SA+ F++I+K ++Y++V
Sbjct: 528 YWLLAIVSAVGFFTFLFISKSYIYRRV 554
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/557 (42%), Positives = 338/557 (60%), Gaps = 71/557 (12%)
Query: 29 SSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFP 88
SS G W ++ F + E+A++FAY+G+A NLI Y T L E TA AA +VN W+G ++ P
Sbjct: 33 SSSGAWKSSGFTMCAEVAEKFAYFGIASNLITYFTEALGESTAVAASNVNLWLGTAAFLP 92
Query: 89 LLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPL------------HYRKAVFF 136
L+ +ADS+LGRF TILL+S Y MG+ LL+ + ++ L + +FF
Sbjct: 93 LIWGSIADSFLGRFRTILLTSSFYIMGLGLLTFSATIPSLCNDQETRESCVSQVKVIIFF 152
Query: 137 TALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196
ALY++A+GEGG K C++ F ADQFDE++P + AKSS+FNW Y I G LV Y
Sbjct: 153 CALYLIALGEGGFKVCLRAFGADQFDEQDPNESKAKSSYFNWLYFAISIGILTTRLVTNY 212
Query: 197 LQDNVGWAVGFGVMAGALALALAIFLIGIKRYR--------KQAPVGSPFTTVAQVFVAT 248
+Q+N+ WA+G+ + ++ LAL +FL+GIK YR + +PF + +VFVA
Sbjct: 213 VQENLSWALGYAIPCLSMMLALFLFLLGIKTYRFSTGGEGRQGKKHDNPFVRIGRVFVAA 272
Query: 249 ARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLAS 308
AR R + D +S T + RFLD+A+I
Sbjct: 273 ARNRR---------------QTPSDTCLLLPNES------TKKFRFLDRAVIS------- 304
Query: 309 RERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQ 368
C +VEE K V+ LIPIWL L+F + Q TFFTKQGSTM RSI S Q
Sbjct: 305 --------CDSYEVEEAKAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTMDRSISSTLQ 356
Query: 369 VPPASLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAA 417
VP A+LQ + L+ILV +P+ IT +GIT LQRI G+F SI++M++AA
Sbjct: 357 VPAATLQCFISLAILVFIPIYDRLFVPIARSITRKPAGITTLQRISTGIFLSIISMVIAA 416
Query: 418 LVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAM 477
LVE KR++TAR++GL+DSPKA VP+S+ WL+PQY+L + DVF +VGLQE FY ++P +
Sbjct: 417 LVEMKRLKTARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPPQL 476
Query: 478 RSIGAAAYISIIGVGSFINTGVIEVVEAITHR----SWLVDNLNRAHLDYFYWVLAGLSA 533
RS+G A Y+SIIG+G+F+++ ++ V+E T + SW +NLN+AHLDYFYW+LA LS+
Sbjct: 477 RSMGLALYLSIIGIGNFLSSFMVSVIEEATSQSGQVSWFSNNLNQAHLDYFYWLLACLSS 536
Query: 534 LNLCVFIWIAKRFVYKK 550
L ++ AK ++Y
Sbjct: 537 LAFIFTVYFAKSYLYNS 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/548 (41%), Positives = 336/548 (61%), Gaps = 47/548 (8%)
Query: 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLG 91
G W AA+FII +E ++R +Y+GLA NL+ YLT +LN+ A ++VN W G++++ PLLG
Sbjct: 40 GAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLG 99
Query: 92 AFVADSYLGRFNTILLSSFIYFMGMVLLSLA------------VSVIPLHYRKAVFFTAL 139
F+AD+YLGR+ T+L+++ IY MG+VLL+++ V V P + FF A+
Sbjct: 100 GFIADAYLGRYATVLVATTIYLMGLVLLTMSWFIPGLKPCHQEVCVEPRKAHEVAFFIAI 159
Query: 140 YILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199
Y++++G GGHKP +++F ADQFD+ + +++ K SFFNWW + + G AV Y++D
Sbjct: 160 YLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGILTAVTAVAYIED 219
Query: 200 NVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHG 259
VGW V ++ +A++L IF IG YR + P GSP T + QVFVA K + +
Sbjct: 220 RVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVAAIAKRNLP--YP 277
Query: 260 GGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMII-DEIDLASRERNPWRLCS 318
+ H + +T+ S R + T L+FLDKA II D+ LA +++PWRL +
Sbjct: 278 SDPSLLH------EVSKTEF-TSGRLLCHTEHLKFLDKAAIIEDKNPLALEKQSPWRLLT 330
Query: 319 LNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLV 378
L +VEE KL+I +IPIW S L F Q TFF KQ TM R IG F VPPAS+ +L
Sbjct: 331 LTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIG-GFTVPPASMFTLT 389
Query: 379 GLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTA 427
L++++++ V IT ++ GI +LQRIG G+ S++TMI+AALVE +R+
Sbjct: 390 ALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEKQRLDRT 449
Query: 428 RENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYIS 487
N P+S+ WL PQ++++ D F +VGLQE FY Q+P++MRS+G A Y+S
Sbjct: 450 NNNK---------PMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLS 500
Query: 488 IIGVGSFIN----TGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIA 543
+IG SF+N T V + E + +SW +LN + LD FYW LAG+ A N+CVF+ +A
Sbjct: 501 VIGAASFLNNLLITAVDTLAENFSGKSWFGKDLNSSRLDRFYWFLAGVIAANICVFVIVA 560
Query: 544 KRFVYKKV 551
KR YK V
Sbjct: 561 KRCPYKSV 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/573 (41%), Positives = 337/573 (58%), Gaps = 42/573 (7%)
Query: 10 IATENG-IEHTENKVSHHKISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNE 68
+ T++G ++ +N + K G W A FI+ E +R AYYG+ NL+ YL + LN+
Sbjct: 6 VYTQDGTVDIHKNPANKEKT---GNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQ 62
Query: 69 PTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVI-- 126
ATAA +V NW G I PL+GAF+AD+YLGR+ TI FIY GM LL+L+ SV
Sbjct: 63 GNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGL 122
Query: 127 -----------PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSF 175
P + AVFF ALY++A+G GG KPCV +F ADQFDE + +K KSSF
Sbjct: 123 KPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSF 182
Query: 176 FNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVG 235
FNW+Y I GA A V +++Q NVGW GFGV A+ +A+ F G + YR Q P G
Sbjct: 183 FNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGG 242
Query: 236 SPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFL 295
SP T + QV VA RK V E DD+ + R + T+ L+F
Sbjct: 243 SPLTRIFQVIVAAFRKISVKVPEDKSLLF----ETADDESNI---KGSRKLVHTDNLKFF 295
Query: 296 DKAMIIDEID-LASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTK 354
DKA + + D + E NPWRLCS+ QVEE+K +I L+P+W + ++F+ + Q+ T F
Sbjct: 296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355
Query: 355 QGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIG 403
QG+TM + +G NF++P ASL +S+L PV T + G T LQR+G
Sbjct: 356 QGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMG 415
Query: 404 IGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIV 463
IGL SI MI A ++E R+ + + D + + +SI+W +PQYLL+ +VF +
Sbjct: 416 IGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTFI 473
Query: 464 GLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRS----WLVDNLNRA 519
G E FYDQ P+AMRS+ +A ++ + +G++++T ++ VV IT ++ W+ DNLNR
Sbjct: 474 GQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRG 533
Query: 520 HLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVL 552
HLDYF+++LA LS LN V++WI+KR+ YKK +
Sbjct: 534 HLDYFFYLLATLSFLNFLVYLWISKRYKYKKAV 566
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SK99|PTR11_ARATH Probable peptide/nitrate transporter At1g22570 OS=Arabidopsis thaliana GN=At1g22570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 248/572 (43%), Positives = 360/572 (62%), Gaps = 59/572 (10%)
Query: 17 EHTENKVSHHKI----SSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT 72
++ + V H SS GGW +A FII VE+A+RFAY+G+A NLI YLT L + TA
Sbjct: 13 DYVSDSVDHRGFPAGKSSTGGWRSAWFIIGVEVAERFAYFGIACNLITYLTGPLGQSTAK 72
Query: 73 AAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVI------ 126
AA +VN W G +SI P+LGAFVAD+YLGR+ TI+++S IY +G+ LL+L+ S+I
Sbjct: 73 AAVNVNTWSGTASILPILGAFVADAYLGRYRTIVVASLIYILGLGLLTLSASLIIMGLSK 132
Query: 127 --------PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNW 178
P + +FF +LY++A+G+GGHKPCVQ F ADQFD +PK+ A+ SFFNW
Sbjct: 133 QRNDASAKPSIWVNTLFFCSLYLVAIGQGGHKPCVQAFGADQFDAEDPKEVIARGSFFNW 192
Query: 179 WYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYR------KQA 232
W+L + G S +++V Y+Q+NV WA GFG+ + +ALAIFL+G K YR ++
Sbjct: 193 WFLSLSAGISISIIVVAYVQENVNWAFGFGIPCLFMVMALAIFLLGRKIYRYPKGHHEEV 252
Query: 233 PVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQL 292
+ F + +VFV + ++ H L+ D + GQS++ R ++L
Sbjct: 253 NSSNTFARIGRVFVIAFKNRKLRLEHS---------SLELDQGLLEDGQSEK---RKDRL 300
Query: 293 RFLDKAMIIDEIDLASRER-NPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTF 351
FL KAMI SRE P CS V++ K ++RLIPIW++ ++ + Q TF
Sbjct: 301 NFLAKAMI-------SREGVEP---CSGRDVDDAKALVRLIPIWITYVVSTIPYAQYITF 350
Query: 352 FTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPV-----------ITGHRSGITMLQ 400
FTKQG T+ R I ++P ASL S VG+SIL++VP+ IT GITMLQ
Sbjct: 351 FTKQGVTVDRRILPGVEIPAASLLSFVGVSILISVPLYERVFLPIARKITKKPFGITMLQ 410
Query: 401 RIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVF 460
RIG G+ S+ M++AALVE+KR++ ARE+GL+D P VP+SIWW +PQYLL+ + D+F
Sbjct: 411 RIGAGMVLSVFNMMLAALVESKRLKIAREHGLVDKPDVTVPMSIWWFVPQYLLLGMIDLF 470
Query: 461 GIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRS-WLVDNLNRA 519
+VG QE FYDQ+P +RSIG + +S +G+ SF++ +I +++ T + W NLNRA
Sbjct: 471 SMVGTQEFFYDQVPTELRSIGLSLSLSAMGLSSFLSGFLISLIDWATGKDGWFNSNLNRA 530
Query: 520 HLDYFYWVLAGLSALNLCVFIWIAKRFVYKKV 551
H+DYFYW+LA +A+ F++I+K +VY+++
Sbjct: 531 HVDYFYWLLAAFTAIAFFAFLFISKMYVYRRL 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/553 (39%), Positives = 342/553 (61%), Gaps = 43/553 (7%)
Query: 29 SSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFP 88
+ G W AA+FII +E ++R +Y+G++ NL+ YLT +L++ A ++ N W G++++ P
Sbjct: 36 AQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVKNTNYWSGVTTLMP 95
Query: 89 LLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLA------------VSVIPLHYRKAVFF 136
LLG FVAD+YLGR+ T+LL++ IY MG++LL+L+ + V P + FF
Sbjct: 96 LLGGFVADAYLGRYGTVLLATTIYLMGLILLTLSWFIPGLKACHEDMCVEPRKAHEIAFF 155
Query: 137 TALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196
A+Y++++G GGHKP +++F ADQF++ +P+++ K S+FNWW G+ G AV V +Y
Sbjct: 156 IAIYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNWWNAGLCAGILTAVTVIVY 215
Query: 197 LQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSE 256
++D +GW V ++ +A + IF IG YR +AP GSP T + QVFVA K +
Sbjct: 216 IEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYRAPSGSPLTPMLQVFVAAIAKRNLPC 275
Query: 257 THGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASR--ERNPW 314
HEL +++ R ++ + L+FLDKA +I++ + ++ +++PW
Sbjct: 276 PSDSSL----LHELTNEEY-----TKGRLLSSSKNLKFLDKAAVIEDRNENTKAEKQSPW 326
Query: 315 RLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSI-GSNFQVPPAS 373
RL ++ +VEEVKL+I +IPIW L F Q T F KQ M R I G++F VPPAS
Sbjct: 327 RLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITGTSFIVPPAS 386
Query: 374 LQSLVGLSILVAVPVI-----------TGHRSGITMLQRIGIGLFTSILTMIVAALVEAK 422
L SL+ LSI++ V + TG+ GI++LQRIG+G+ S+ MI+AAL+E K
Sbjct: 387 LFSLIALSIIITVTIYEKLLVPLLRRATGNERGISILQRIGVGMVFSLFAMIIAALIEKK 446
Query: 423 RVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGA 482
R+ A+E+ + + +S WL PQ+L++ + D F +VGLQE FYDQ+P++MRS+G
Sbjct: 447 RLDYAKEHHM----NKTMTLSAIWLAPQFLVLGVADAFTLVGLQEYFYDQVPDSMRSLGI 502
Query: 483 AAYISIIGVGSFINTGVIEV----VEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCV 538
A Y+S++G SF+N +I V E I+ + W +LN + LD FYW+LA L+A N+C
Sbjct: 503 AFYLSVLGAASFVNNLLITVSDHLAEEISGKGWFGKDLNSSRLDRFYWMLAALTAANICC 562
Query: 539 FIWIAKRFVYKKV 551
F+ +A R+ YK V
Sbjct: 563 FVIVAMRYTYKTV 575
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| 224053256 | 570 | predicted protein [Populus trichocarpa] | 0.962 | 0.947 | 0.683 | 0.0 | |
| 255543997 | 615 | Peptide transporter, putative [Ricinus c | 0.975 | 0.889 | 0.661 | 0.0 | |
| 224075850 | 509 | predicted protein [Populus trichocarpa] | 0.877 | 0.966 | 0.673 | 0.0 | |
| 356556821 | 576 | PREDICTED: probable peptide/nitrate tran | 0.939 | 0.914 | 0.663 | 0.0 | |
| 356548879 | 579 | PREDICTED: probable peptide/nitrate tran | 0.937 | 0.908 | 0.675 | 0.0 | |
| 225465872 | 575 | PREDICTED: probable peptide/nitrate tran | 0.985 | 0.961 | 0.624 | 0.0 | |
| 357515089 | 572 | Peptide transporter PTR1 [Medicago trunc | 0.955 | 0.937 | 0.625 | 0.0 | |
| 296090334 | 1794 | unnamed protein product [Vitis vinifera] | 0.951 | 0.297 | 0.625 | 0.0 | |
| 186511048 | 555 | putative peptide/nitrate transporter [Ar | 0.935 | 0.945 | 0.576 | 0.0 | |
| 297816742 | 555 | hypothetical protein ARALYDRAFT_348537 [ | 0.935 | 0.945 | 0.573 | 0.0 |
| >gi|224053256|ref|XP_002297740.1| predicted protein [Populus trichocarpa] gi|222844998|gb|EEE82545.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/563 (68%), Positives = 451/563 (80%), Gaps = 23/563 (4%)
Query: 12 TENGIEHTENKVSHHKISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTA 71
T+NG T+ VS + SKGGWNAAIFII VE+A RFAYYGLAGNLI YLTN L++ T+
Sbjct: 2 TQNGRAETK-VVSTTRKPSKGGWNAAIFIIFVEVALRFAYYGLAGNLITYLTNDLHQSTS 60
Query: 72 TAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYR 131
TA +++N WVG+S+IFP+ GA VADS LGRF TILLSS IYF+GMVLL+L+VSVIP HYR
Sbjct: 61 TAIKNINTWVGVSAIFPIFGAIVADSLLGRFKTILLSSTIYFIGMVLLTLSVSVIPTHYR 120
Query: 132 KAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191
+AVFF ALYILAVGEGGHKP VQTFAADQFDE P++K AKSSFFNWWYLGIV GAS+A+
Sbjct: 121 EAVFFIALYILAVGEGGHKPSVQTFAADQFDEEEPEEKAAKSSFFNWWYLGIVVGASSAI 180
Query: 192 LVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARK 251
LV IY+QDN+GW G G++ GAL +AL IFLIGIKRYRKQAPVGSPFT VAQVFVA RK
Sbjct: 181 LVVIYIQDNLGWTAGIGILTGALGVALFIFLIGIKRYRKQAPVGSPFTMVAQVFVAATRK 240
Query: 252 WRVSETHGGGRGIYHGHELDDDDKRTDIGQS-KRTIARTNQLRFLDKAMIIDEIDLASRE 310
RV +T G Y D + GQ+ KRT+A TNQ RFLDKAMIID++D +S+
Sbjct: 241 RRVVQTRQGWGICYEAGGTDIE------GQTRKRTLAATNQFRFLDKAMIIDDLDASSKN 294
Query: 311 RNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVP 370
RNPWRLCSLNQVEEVKLV+RL+PIWLSCLMF+ ++VQ HT F KQGSTM RSIG NFQVP
Sbjct: 295 RNPWRLCSLNQVEEVKLVLRLLPIWLSCLMFTVVIVQTHTLFIKQGSTMTRSIGPNFQVP 354
Query: 371 PASLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALV 419
PAS QSLVGL+IL +P+ ITGH SGITMLQRIGIGLF SI+ M+VAALV
Sbjct: 355 PASFQSLVGLTILFTIPLYERVFIPAARKITGHSSGITMLQRIGIGLFLSIVEMVVAALV 414
Query: 420 EAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRS 479
EAKRV ARE+GL+D PKA +P+S+WW+LPQY++ I DVF +VGLQELFYDQMPE+MRS
Sbjct: 415 EAKRVSIAREHGLMDIPKATIPMSVWWILPQYMISGISDVFTVVGLQELFYDQMPESMRS 474
Query: 480 IGAAAYISIIGVGSFINTGVIEVVEAITHRS---WLVDNLNRAHLDYFYWVLAGLSALNL 536
+GAAAYIS+ G+GSF NT +I VV+AIT RS L +NLNRAH+DYFYW+LA LSALN
Sbjct: 475 MGAAAYISVTGLGSFFNTAIITVVQAITARSSGILLGNNLNRAHVDYFYWILAVLSALNF 534
Query: 537 CVFIWIAKRFVYKKVLEDESKEE 559
CV++W+A FVYKKV E E +E
Sbjct: 535 CVYLWVAHGFVYKKV-EGEKPQE 556
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543997|ref|XP_002513061.1| Peptide transporter, putative [Ricinus communis] gi|223548072|gb|EEF49564.1| Peptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/571 (66%), Positives = 456/571 (79%), Gaps = 24/571 (4%)
Query: 1 MDSSVAVAPIATENGIEHTENKVSHHKISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQ 60
MDS+V+ P+ E + VS K KGGWN+AIFII++E+A+RFA+YG+AGNLI
Sbjct: 39 MDSTVS--PVTIEEDGHELTDMVSTSK--RKGGWNSAIFIILLEVAERFAFYGVAGNLIT 94
Query: 61 YLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLS 120
YLTN L++PTA AA+++N W+G+SSIFP+LGAF+ADS+LGRF TIL +S IYF GMVLL+
Sbjct: 95 YLTNDLHQPTAAAAKNINTWIGVSSIFPILGAFIADSFLGRFKTILFASIIYFTGMVLLT 154
Query: 121 LAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWY 180
L+VSV+P H+R+ FF ALYILA+GEGGHKPCVQTFAADQFDE P++K AKSSFFNWWY
Sbjct: 155 LSVSVVPTHHREMAFFIALYILAIGEGGHKPCVQTFAADQFDEEKPEEKAAKSSFFNWWY 214
Query: 181 LGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTT 240
L I GA+ AV V IY+QDNVGW G ++AG L +AL +FL+GIKRYR +AP GSP+TT
Sbjct: 215 LSIAVGATVAVFVVIYIQDNVGWTEGSAMLAGVLVVALMVFLMGIKRYRIEAPCGSPYTT 274
Query: 241 VAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDI-GQSK-RTIARTNQLRFLDKA 298
VAQVFVA A+K RVSET G + +D+ D D+ GQ K R +ART Q RFLDKA
Sbjct: 275 VAQVFVAAAKKQRVSETREG----WGLCCVDEKDGADDLEGQPKVRVLARTKQFRFLDKA 330
Query: 299 MIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGST 358
MIID ID++++ RNPWRLC+LNQVEEVK V+RLIPIWLSCLMF+ I+VQ HTFF KQGST
Sbjct: 331 MIIDNIDISNKTRNPWRLCTLNQVEEVKQVLRLIPIWLSCLMFTAIIVQTHTFFIKQGST 390
Query: 359 MRRSIGSNFQVPPASLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLF 407
M RSIG +F PPASLQSL G++IL+AVP+ ITGH SGITMLQRIGIGLF
Sbjct: 391 MIRSIGPHFLFPPASLQSLTGMTILIAVPIYDKFFVPIARKITGHPSGITMLQRIGIGLF 450
Query: 408 TSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQE 467
SIL M+VAALVEAKRV TA E+GLID+PKAIVP+++WWLLPQY++ + DVF ++GLQE
Sbjct: 451 LSILEMVVAALVEAKRVSTAFEHGLIDTPKAIVPMAVWWLLPQYMISGLADVFTVIGLQE 510
Query: 468 LFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRS---WLVDNLNRAHLDYF 524
LFYDQMP AMRS+GAAAYISIIG+GSFIN+ VI VV+A+T R WL DN+NR+HLDYF
Sbjct: 511 LFYDQMPVAMRSMGAAAYISIIGIGSFINSAVISVVQAVTSRRGHVWLGDNVNRSHLDYF 570
Query: 525 YWVLAGLSALNLCVFIWIAKRFVYKKVLEDE 555
YWVLA LSALNLCV++WIA FVYKKV D
Sbjct: 571 YWVLAVLSALNLCVYVWIASGFVYKKVEGDH 601
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075850|ref|XP_002304796.1| predicted protein [Populus trichocarpa] gi|222842228|gb|EEE79775.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/536 (67%), Positives = 423/536 (78%), Gaps = 44/536 (8%)
Query: 30 SKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPL 89
+KGGWN+AIFII VE++ RFAYYGLAGNLI YLTN L++ T+TA ++VN WVG+S+IFP+
Sbjct: 3 TKGGWNSAIFIIFVEVSLRFAYYGLAGNLITYLTNDLHQSTSTAIKNVNTWVGVSAIFPI 62
Query: 90 LGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGH 149
GA VADS LGRF TILL+S IYF+GM+LL+L+VSVIP+ YR+AVFF ALYILAVGEGGH
Sbjct: 63 FGAIVADSLLGRFKTILLASAIYFLGMILLTLSVSVIPMRYREAVFFIALYILAVGEGGH 122
Query: 150 KPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGV 209
KPCVQTFAADQFDE P++K AKSSFFNWWYLGIV G S+AVL+ IY+QDNVGW GFG+
Sbjct: 123 KPCVQTFAADQFDEEKPEEKAAKSSFFNWWYLGIVAGGSSAVLLVIYIQDNVGWTAGFGM 182
Query: 210 MAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHE 269
+ GAL +AL IFL GIKRYRKQAPV SPFT VAQVFVA RK RV ETH G GI +
Sbjct: 183 LTGALGVALFIFLAGIKRYRKQAPVKSPFTMVAQVFVAAMRKRRVIETH-QGLGICY--- 238
Query: 270 LDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVI 329
+ AMIID +D +S+ RNPWRLCSLNQVEEVKLV+
Sbjct: 239 --------------------------EAAMIIDNLDASSKPRNPWRLCSLNQVEEVKLVL 272
Query: 330 RLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPV- 388
RL+PIWLSC MF+ +LVQ HT F KQGSTM RSIG NFQVPPAS QSLVGL+IL +P+
Sbjct: 273 RLLPIWLSCFMFTAVLVQTHTLFIKQGSTMIRSIGPNFQVPPASFQSLVGLTILFTIPIY 332
Query: 389 ----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKA 438
+TGHRSGITMLQRIGIGLF SI+ M+VAA VEAKRV ARE+GL+D+PKA
Sbjct: 333 DRIFVPAARKLTGHRSGITMLQRIGIGLFLSIVEMVVAAQVEAKRVSIAREHGLMDTPKA 392
Query: 439 IVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTG 498
+P+S+WW+LPQY++ I DVF +VGLQELFYDQMPE+MRS+GAAA+IS+IGVGSFINT
Sbjct: 393 TIPMSVWWILPQYMISGISDVFTVVGLQELFYDQMPESMRSLGAAAHISVIGVGSFINTA 452
Query: 499 VIEVVEAITHRS---WLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKV 551
+I V+AIT RS L DNLNRAH+DYFYWV+A LSALN CV++WIA FVYKKV
Sbjct: 453 IITAVQAITARSIGILLGDNLNRAHVDYFYWVMAALSALNFCVYLWIASGFVYKKV 508
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556821|ref|XP_003546719.1| PREDICTED: probable peptide/nitrate transporter At3g54450-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/555 (66%), Positives = 438/555 (78%), Gaps = 28/555 (5%)
Query: 25 HHKISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGIS 84
HH + KGGWNAAIFII VE A+RFAY GLA NLIQYLTNVLNEP AA+DVN WVG S
Sbjct: 17 HHPTNLKGGWNAAIFIIFVEFAERFAYQGLASNLIQYLTNVLNEPITQAAKDVNTWVGAS 76
Query: 85 SIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAV 144
S+FPLLG F+ADSYLGRFNTILLSS IYF+GMV L+L+VS + K +FF ALY+LA+
Sbjct: 77 SLFPLLGGFIADSYLGRFNTILLSSVIYFVGMVFLTLSVSALK---HKFLFFLALYVLAI 133
Query: 145 GEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWA 204
G+GGHKPCVQTFAADQFDE P++K AKSSFFNWWYLGIV G++A+V V IYLQDNVGW
Sbjct: 134 GDGGHKPCVQTFAADQFDEDTPEEKDAKSSFFNWWYLGIVAGSTASVFVVIYLQDNVGWG 193
Query: 205 VGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGI 264
VG GV+AG LALALA+FL+GIKRYRK+ P GSPFT +AQVFVA +RKWRV THG
Sbjct: 194 VGLGVLAGVLALALALFLLGIKRYRKEGPAGSPFTRLAQVFVAASRKWRVQATHG----- 248
Query: 265 YHGHELDDDDKRTD------IGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCS 318
+H + D+D++ + + T+ T+Q RFLDKA IIDEID ++ R+PWRLCS
Sbjct: 249 HHNYCYDEDEEHHEPHNHLHVQPKIHTLLHTHQYRFLDKAAIIDEIDAKTKTRDPWRLCS 308
Query: 319 LNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLV 378
+ QVEEVKLV+RLIPIWLSCLMF+ + Q+HTFF KQG+TM R+IG +FQVPPASLQ LV
Sbjct: 309 VTQVEEVKLVLRLIPIWLSCLMFTVVQAQVHTFFIKQGATMVRTIGPHFQVPPASLQGLV 368
Query: 379 GLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTA 427
G++IL AVP ITG +GIT+LQRIG+GLF SIL M+V+ALVEAKRV A
Sbjct: 369 GVTILFAVPFYDRVFVPLARKITGKPTGITVLQRIGVGLFLSILNMVVSALVEAKRVGVA 428
Query: 428 RENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYIS 487
+E+GLID PKA++PISIWWLLPQY++ I D F IVGLQELFYDQMPEA+RS+GAAAYIS
Sbjct: 429 KESGLIDDPKAVLPISIWWLLPQYMITGISDAFTIVGLQELFYDQMPEALRSLGAAAYIS 488
Query: 488 IIGVGSFINTGVIEVVEAITHRS---WLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAK 544
I+GVGSF+ VI VVE +T R+ WL +NLNRAHLDYFYWVLAGLSA+NLCV++W+A
Sbjct: 489 IVGVGSFVGNIVIVVVEGVTSRAGEKWLGNNLNRAHLDYFYWVLAGLSAVNLCVYVWLAI 548
Query: 545 RFVYKKVLEDESKEE 559
+VYKKV E +
Sbjct: 549 VYVYKKVDEGHQTSD 563
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548879|ref|XP_003542826.1| PREDICTED: probable peptide/nitrate transporter At3g54450-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/546 (67%), Positives = 428/546 (78%), Gaps = 20/546 (3%)
Query: 25 HHKISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGIS 84
HH + KGGWNAAIFII VE A+RFAY GLA NLIQYLTNVLNEP AA+DVN WVG S
Sbjct: 17 HHPTNLKGGWNAAIFIIFVEFAERFAYQGLASNLIQYLTNVLNEPITQAAKDVNTWVGAS 76
Query: 85 SIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAV 144
S+FPLLG F+ADSYLGRFNTILLSS IYF GMV L+L+V+ K +FF ALY+LA+
Sbjct: 77 SLFPLLGGFIADSYLGRFNTILLSSVIYFAGMVFLTLSVTAFK---HKLLFFLALYVLAI 133
Query: 145 GEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWA 204
G+GGHKPCVQTFAADQFDE P++K AKSSFFNWWYLGIV G++A+V V IYLQDNVGW
Sbjct: 134 GDGGHKPCVQTFAADQFDEDTPEEKDAKSSFFNWWYLGIVAGSTASVFVVIYLQDNVGWG 193
Query: 205 VGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGI 264
VG GV+AG LALALA+FL+GIKRYRK+ P GSPFT +AQVFVA RKWRV THG
Sbjct: 194 VGLGVLAGVLALALALFLLGIKRYRKEGPAGSPFTRLAQVFVAAWRKWRVQATHGHYNFF 253
Query: 265 YHGHELDDDDKRTDIGQSK-RTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVE 323
+ E + Q K T+ T+Q RFLDKA IIDEID S+ R+PWRLCSL QVE
Sbjct: 254 HDEDEEHHEPHHHLHVQPKIHTLLHTHQYRFLDKAAIIDEIDAESKTRDPWRLCSLTQVE 313
Query: 324 EVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSIL 383
EVKLV+RLIPIWLSCLMF+ + Q+HTFF KQG+TM RSIG +FQVPPASLQ LVG++IL
Sbjct: 314 EVKLVLRLIPIWLSCLMFTVVQSQVHTFFIKQGATMERSIGPHFQVPPASLQGLVGVTIL 373
Query: 384 VAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGL 432
AVP ITG +GIT+LQRIG+GLF SIL M+V+ALVE KRV A+E GL
Sbjct: 374 FAVPFYDRVFVPLARKITGKPTGITVLQRIGVGLFLSILNMVVSALVEDKRVGVAKEFGL 433
Query: 433 IDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVG 492
ID PKA++PISIWWLLPQY++ I D F IVGLQELFYDQMPE++RS+GAAAYISI+GVG
Sbjct: 434 IDDPKAVLPISIWWLLPQYMITGISDAFTIVGLQELFYDQMPESLRSLGAAAYISIVGVG 493
Query: 493 SFINTGVIEVVEAITHRS-----WLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFV 547
SF+ VI VVEA+T R+ WL +NLNRAHLDYFYWVLAGLSA+NLCV++W+A +V
Sbjct: 494 SFVGNIVIIVVEAVTSRAGDGEKWLGNNLNRAHLDYFYWVLAGLSAVNLCVYVWLAIAYV 553
Query: 548 YKKVLE 553
YKKV E
Sbjct: 554 YKKVDE 559
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465872|ref|XP_002266676.1| PREDICTED: probable peptide/nitrate transporter At3g54450 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/573 (62%), Positives = 440/573 (76%), Gaps = 20/573 (3%)
Query: 1 MDSSVAVAPIATENGIEHTENKVSHHKISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQ 60
MD+SVA I T++G++ E +S SKG W AAIFII VEMA+RFAYYG+AGNL
Sbjct: 1 MDNSVAPMVI-TDDGLQ--ETAISSKTNPSKGRWRAAIFIIFVEMAERFAYYGVAGNLFT 57
Query: 61 YLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLS 120
YLTNVL E TATAA++VN WVG+S+IFPLLG F+ADSYLGRF TI+ SS IY G++L++
Sbjct: 58 YLTNVLGEHTATAAKNVNTWVGVSAIFPLLGGFIADSYLGRFKTIIASSVIYLAGLLLMT 117
Query: 121 LAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWY 180
L+VSV L + +AVFFTALYIL++GEGGHKPCVQTFAADQFDE ++K KSSFFNWWY
Sbjct: 118 LSVSVQSLRHHRAVFFTALYILSIGEGGHKPCVQTFAADQFDEDTVEEKKDKSSFFNWWY 177
Query: 181 LGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTT 240
+GIV G++ A+LV IY+QDNVGW +GFG++A A+A AL +FLIGI+ YR+Q PVGSP T
Sbjct: 178 VGIVVGSTTAILVVIYVQDNVGWGLGFGMLAAAVAAALLLFLIGIRSYRRQRPVGSPLTR 237
Query: 241 VAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMI 300
V QV VATARK RV+ET GRG+ E + DD + G+ R++A TNQ RFLDKA I
Sbjct: 238 VMQVLVATARKLRVNETR-YGRGVC--LEDEGDDGVEEGGRRGRSLAPTNQFRFLDKATI 294
Query: 301 IDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMR 360
ID+ID +++ RN WRLC QVEEVKL+ L PIWLSCL F+ ++ Q+ T+FTKQGST+
Sbjct: 295 IDDIDASTKVRNHWRLCPATQVEEVKLLFSLFPIWLSCLTFATVIAQMSTYFTKQGSTLE 354
Query: 361 RSIGSNFQVPPASLQSLVGLSILVA--------VPV---ITGHRSGITMLQRIGIGLFTS 409
RSIGS+F +PPASLQ GL+ILV+ VPV TG SGITMLQRIG G+F S
Sbjct: 355 RSIGSHFSIPPASLQVCTGLTILVSVGLYDRVLVPVARKFTGLPSGITMLQRIGTGIFFS 414
Query: 410 ILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELF 469
+LTM+VAALVE KR+ A ++GL DSP+ +P+ IWWLLPQY+L +CDVF IVG+QELF
Sbjct: 415 MLTMVVAALVETKRISVAIDHGLTDSPRTTLPMKIWWLLPQYMLTGMCDVFTIVGMQELF 474
Query: 470 YDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRS---WLVDNLNRAHLDYFYW 526
YDQMPE MRSIGAA YIS +GVGS +++ I +V+AIT R+ WL DNLNRAHL+YFY
Sbjct: 475 YDQMPEEMRSIGAALYISTVGVGSLMSSAAISIVQAITSRAGGKWLGDNLNRAHLNYFYS 534
Query: 527 VLAGLSALNLCVFIWIAKRFVYKKVLEDESKEE 559
VLAG SALNL V+IW+AKRFVYKK D+ K E
Sbjct: 535 VLAGCSALNLIVYIWVAKRFVYKKTGYDDPKGE 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515089|ref|XP_003627833.1| Peptide transporter PTR1 [Medicago truncatula] gi|355521855|gb|AET02309.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/553 (62%), Positives = 424/553 (76%), Gaps = 17/553 (3%)
Query: 21 NKVSHHKISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNW 80
N + HH + KGGWNAAIFII VE A+RFAY GLA NLI YLT LNEPT TA ++VN W
Sbjct: 11 NSLIHHSTTKKGGWNAAIFIIFVEFAERFAYQGLASNLINYLTKFLNEPTTTAVKNVNTW 70
Query: 81 VGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALY 140
VG+SS+FPLLG F+ADSYLGRFNTILLSS IY +GM+ L+L+VS + K +FF ALY
Sbjct: 71 VGVSSLFPLLGGFIADSYLGRFNTILLSSLIYLVGMIFLTLSVSAL---RHKTLFFFALY 127
Query: 141 ILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN 200
+L++GEGGHKPCVQTFAADQFD+ P++K AKSSFFNWWYLGIV G++AAV + IYLQDN
Sbjct: 128 VLSIGEGGHKPCVQTFAADQFDDDTPEEKDAKSSFFNWWYLGIVAGSTAAVFIPIYLQDN 187
Query: 201 VGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGG 260
VGW VG GV+AG LALALA+FL+GIKRYRK+ P GSPFT +AQV VA ARKWRV +T
Sbjct: 188 VGWGVGLGVLAGVLALALALFLLGIKRYRKEGPTGSPFTRLAQVSVAAARKWRVQDTLLH 247
Query: 261 GRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLN 320
H E D+ + T+ TNQ R LDKA IIDE+D ++ RNPWRLCS+
Sbjct: 248 SNNFCHSEEEKDEPHHVHVRPKYHTLLHTNQYRCLDKAAIIDEVDSLNKTRNPWRLCSVT 307
Query: 321 QVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGL 380
QVEEVKLV+RLIPIWLSC+MF+ + QLHT+F KQG T+ ++GS FQ PPASLQ LVG+
Sbjct: 308 QVEEVKLVVRLIPIWLSCIMFTVVQAQLHTYFLKQGGTLIHTLGSKFQFPPASLQGLVGV 367
Query: 381 SILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARE 429
+IL VP+ TGH +GIT+LQRIG GLF SILTM+V+ALVE KR+ A++
Sbjct: 368 TILFVVPIYDRVFVPLARKFTGHPNGITVLQRIGFGLFLSILTMVVSALVETKRINVAKK 427
Query: 430 NGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISII 489
+GLID AI+P+ IWWLLPQ+++ I D F IVGLQE+FYDQMP+ +RS+GAAAYISI+
Sbjct: 428 HGLIDDQSAILPMHIWWLLPQFMITGISDAFTIVGLQEIFYDQMPDGLRSLGAAAYISIV 487
Query: 490 GVGSFINTGVIEVVEAITHRS---WLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRF 546
GVGSF++ +IEV+EAI+ ++ WL DN+NRAHLD +YWV+A LSA+NL V+IWIAKRF
Sbjct: 488 GVGSFVSNIIIEVIEAISSKAGEKWLGDNINRAHLDDYYWVMAVLSAINLGVYIWIAKRF 547
Query: 547 VYKKVLEDESKEE 559
YKKV DE +
Sbjct: 548 EYKKVDGDERSNQ 560
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090334|emb|CBI40153.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/553 (62%), Positives = 428/553 (77%), Gaps = 19/553 (3%)
Query: 10 IATENGIEHTENKVSHHKISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEP 69
+ T++G++ E +S SKG W AAIFII VEMA+RFAYYG+AGNL YLTNVL E
Sbjct: 2 VITDDGLQ--ETAISSKTNPSKGRWRAAIFIIFVEMAERFAYYGVAGNLFTYLTNVLGEH 59
Query: 70 TATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH 129
TATAA++VN WVG+S+IFPLLG F+ADSYLGRF TI+ SS IY G++L++L+VSV L
Sbjct: 60 TATAAKNVNTWVGVSAIFPLLGGFIADSYLGRFKTIIASSVIYLAGLLLMTLSVSVQSLR 119
Query: 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189
+ +AVFFTALYIL++GEGGHKPCVQTFAADQFDE ++K KSSFFNWWY+GIV G++
Sbjct: 120 HHRAVFFTALYILSIGEGGHKPCVQTFAADQFDEDTVEEKKDKSSFFNWWYVGIVVGSTT 179
Query: 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATA 249
A+LV IY+QDNVGW +GFG++A A+A AL +FLIGI+ YR+Q PVGSP T V QV VATA
Sbjct: 180 AILVVIYVQDNVGWGLGFGMLAAAVAAALLLFLIGIRSYRRQRPVGSPLTRVMQVLVATA 239
Query: 250 RKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASR 309
RK RV+ET GRG+ E + DD + G+ R++A TNQ RFLDKA IID+ID +++
Sbjct: 240 RKLRVNETR-YGRGVC--LEDEGDDGVEEGGRRGRSLAPTNQFRFLDKATIIDDIDASTK 296
Query: 310 ERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQV 369
RN WRLC QVEEVKL+ L PIWLSCL F+ ++ Q+ T+FTKQGST+ RSIGS+F +
Sbjct: 297 VRNHWRLCPATQVEEVKLLFSLFPIWLSCLTFATVIAQMSTYFTKQGSTLERSIGSHFSI 356
Query: 370 PPASLQSLVGLSILVA--------VPV---ITGHRSGITMLQRIGIGLFTSILTMIVAAL 418
PPASLQ GL+ILV+ VPV TG SGITMLQRIG G+F S+LTM+VAAL
Sbjct: 357 PPASLQVCTGLTILVSVGLYDRVLVPVARKFTGLPSGITMLQRIGTGIFFSMLTMVVAAL 416
Query: 419 VEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMR 478
VE KR+ A ++GL DSP+ +P+ IWWLLPQY+L +CDVF IVG+QELFYDQMPE MR
Sbjct: 417 VETKRISVAIDHGLTDSPRTTLPMKIWWLLPQYMLTGMCDVFTIVGMQELFYDQMPEEMR 476
Query: 479 SIGAAAYISIIGVGSFINTGVIEVVEAITHRS---WLVDNLNRAHLDYFYWVLAGLSALN 535
SIGAA YIS +GVGS +++ I +V+AIT R+ WL DNLNRAHL+YFY VLAG SALN
Sbjct: 477 SIGAALYISTVGVGSLMSSAAISIVQAITSRAGGKWLGDNLNRAHLNYFYSVLAGCSALN 536
Query: 536 LCVFIWIAKRFVY 548
L V+IW+AKRFV+
Sbjct: 537 LIVYIWVAKRFVH 549
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186511048|ref|NP_974431.2| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75311782|sp|Q9M1I2.1|PTR46_ARATH RecName: Full=Probable peptide/nitrate transporter At3g54450 gi|7258348|emb|CAB77565.1| oligopeptide transporter-like protein [Arabidopsis thaliana] gi|332645712|gb|AEE79233.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/546 (57%), Positives = 423/546 (77%), Gaps = 21/546 (3%)
Query: 30 SKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPL 89
+KGGWNAA+FII+VE+A+RFA+YGLA NLI +LTN L + TATAA+++N W+G+S +FP+
Sbjct: 12 TKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMFPI 71
Query: 90 LGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGH 149
LGAF+ADS LGRF T+LL+SFIY +G+V+L L+V+V+ R+ VFF ALY++AVGEGGH
Sbjct: 72 LGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVVARRMREKVFFMALYVMAVGEGGH 131
Query: 150 KPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGV 209
KPCV TFAADQF E N ++K AK+SFFN+WY+ IV +S AVL I++Q+ V W++GF +
Sbjct: 132 KPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGFSI 191
Query: 210 MAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHE 269
+AG++ +A+ IFLIGI +YRKQ PVGSPFT VAQV VA +KWR+S T R Y
Sbjct: 192 IAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLSST----RHHYGLCY 247
Query: 270 LDDDDKRTDIGQSKRT--IARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKL 327
++D+ + + S + +ARTNQ RFLDKA IIDEID ++ RNPWRLC++NQVEEVKL
Sbjct: 248 EEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEID-HNKNRNPWRLCTVNQVEEVKL 306
Query: 328 VIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVP 387
++RLIPIW+S +MF L QL+TFF KQGS M R+IG++F +PPA+ QS+VG++IL+ +P
Sbjct: 307 ILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIP 366
Query: 388 V-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSP 436
+ IT H SGIT LQRIG+GLF + M++ LVEAKR++ AR++GLIDSP
Sbjct: 367 LYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLIDSP 426
Query: 437 KAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFIN 496
K +VP+S WLLPQY+LV I DVF IVG+QELFYDQMPE MRSIGAA +IS++GVGSF++
Sbjct: 427 KEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSFVS 486
Query: 497 TGVIEVVEAITH---RSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVLE 553
TG+I V+ I+ WLV+NLNRAHLDY+YW++A L+A++LC +++IA F+YKK+ +
Sbjct: 487 TGIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVSLCFYLFIANHFLYKKLQD 546
Query: 554 DESKEE 559
+ E
Sbjct: 547 KDDDVE 552
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816742|ref|XP_002876254.1| hypothetical protein ARALYDRAFT_348537 [Arabidopsis lyrata subsp. lyrata] gi|297322092|gb|EFH52513.1| hypothetical protein ARALYDRAFT_348537 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/546 (57%), Positives = 419/546 (76%), Gaps = 21/546 (3%)
Query: 30 SKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPL 89
+KGGWNAA+FII+VEMA+RFA+YGLA NLI +LTN L + TATAA+ +N W+G+S +FP+
Sbjct: 12 TKGGWNAAVFIIVVEMAERFAFYGLASNLITFLTNELGQSTATAAKHINTWIGVSCMFPI 71
Query: 90 LGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGH 149
LGAF+ADS LGRF T+LL+SF+Y +GMV+L L+V+V+ R+ V F ALY++AVGEGGH
Sbjct: 72 LGAFLADSILGRFKTVLLTSFVYLLGMVMLPLSVTVVAPRMREKVLFMALYVMAVGEGGH 131
Query: 150 KPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGV 209
KPCV TFAADQF E NP++K AK+SFFN+WY+ IV +S AVL I++Q+ V W++GF +
Sbjct: 132 KPCVMTFAADQFGEANPEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGFSI 191
Query: 210 MAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHE 269
+AG++ +A+ IFLIGI +YRKQ PVGSP T VAQV VA +KWR+S T R Y
Sbjct: 192 IAGSVVIAIVIFLIGIPKYRKQVPVGSPLTRVAQVIVAALKKWRLSST----RHHYGLCY 247
Query: 270 LDDDDKRTDIGQSKRT--IARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKL 327
++D+ +++ S + +ARTNQ RFLDKA IIDEID ++ RNPWRLC++NQVEEVKL
Sbjct: 248 EEEDEHKSESTNSNQIYLLARTNQFRFLDKATIIDEID-HNKNRNPWRLCTVNQVEEVKL 306
Query: 328 VIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVP 387
++RL+PIW+S +MF L QL+TFF KQGS M R+IG +F +PPA+ QS+VG++IL+ +P
Sbjct: 307 ILRLMPIWISLIMFCATLTQLNTFFLKQGSMMNRTIGDHFTIPPAAFQSIVGVTILILIP 366
Query: 388 V-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSP 436
+ IT H SGIT LQRIG+GLF + M++ LVEAKR+R A ++GLIDSP
Sbjct: 367 LYDRVFVPMIRKITNHHSGITSLQRIGVGLFVATFNMMICGLVEAKRLRVASDHGLIDSP 426
Query: 437 KAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFIN 496
K +VP+S WLLPQY+LV I DVF IVG+QELFYDQMPE MRSIGAA +I ++GVGSF++
Sbjct: 427 KEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFIGVVGVGSFVS 486
Query: 497 TGVIEVVEAITH---RSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVLE 553
TG+I V+ I+ WLV+NLN+AHLDY+YW++A L+A++LC +++IA FVYKK+ +
Sbjct: 487 TGIISTVQTISKSHGEEWLVNNLNKAHLDYYYWIIASLNAVSLCFYLFIANHFVYKKLQD 546
Query: 554 DESKEE 559
+ E
Sbjct: 547 KDDDVE 552
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| TAIR|locus:1006230253 | 555 | AT3G54450 [Arabidopsis thalian | 0.934 | 0.944 | 0.544 | 2.9e-158 | |
| TAIR|locus:2009487 | 557 | AT1G22540 [Arabidopsis thalian | 0.884 | 0.890 | 0.428 | 1.2e-111 | |
| TAIR|locus:4515102750 | 561 | AT1G72125 [Arabidopsis thalian | 0.918 | 0.918 | 0.403 | 4.9e-108 | |
| TAIR|locus:2009472 | 564 | AT1G22550 [Arabidopsis thalian | 0.885 | 0.881 | 0.404 | 2.2e-105 | |
| TAIR|locus:2009542 | 565 | AT1G22570 [Arabidopsis thalian | 0.901 | 0.895 | 0.417 | 2.5e-104 | |
| TAIR|locus:2030326 | 557 | AT1G72120 [Arabidopsis thalian | 0.910 | 0.917 | 0.391 | 5.3e-104 | |
| TAIR|locus:2065568 | 575 | AT2G37900 [Arabidopsis thalian | 0.893 | 0.871 | 0.394 | 2.7e-100 | |
| TAIR|locus:2206991 | 555 | AT1G72140 [Arabidopsis thalian | 0.413 | 0.418 | 0.473 | 1.1e-99 | |
| TAIR|locus:2030316 | 538 | AT1G72130 [Arabidopsis thalian | 0.404 | 0.421 | 0.417 | 1.6e-98 | |
| TAIR|locus:2161428 | 586 | AT5G46040 [Arabidopsis thalian | 0.720 | 0.689 | 0.368 | 7.8e-95 |
| TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1542 (547.9 bits), Expect = 2.9e-158, P = 2.9e-158
Identities = 296/544 (54%), Positives = 393/544 (72%)
Query: 30 SKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPL 89
+KGGWNAA+FII+VE+A+RFA+YGLA NLI +LTN L + TATAA+++N W+G+S +FP+
Sbjct: 12 TKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMFPI 71
Query: 90 LGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGH 149
LGAF+ADS LGRF T+LL+SFIY +G+V+L L+V+V+ R+ VFF ALY++AVGEGGH
Sbjct: 72 LGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVVARRMREKVFFMALYVMAVGEGGH 131
Query: 150 KPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWXXXXXX 209
KPCV TFAADQF E N ++K AK+SFFN+WY+ IV +S AVL I++Q+ V W
Sbjct: 132 KPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGFSI 191
Query: 210 XXXXXXXXXXXXXXXIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHE 269
I +YRKQ PVGSPFT VAQV VA +KWR+S T G+ + E
Sbjct: 192 IAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLSSTRHH-YGLCY--E 248
Query: 270 LDDDDKRTDIGQSK-RTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLV 328
+D+ K ++ +ARTNQ RFLDKA IIDEID ++ RNPWRLC++NQVEEVKL+
Sbjct: 249 EEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEID-HNKNRNPWRLCTVNQVEEVKLI 307
Query: 329 IRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPV 388
+RLIPIW+S +MF L QL+TFF KQGS M R+IG++F +PPA+ QS+VG++IL+ +P+
Sbjct: 308 LRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIPL 367
Query: 389 -----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPK 437
IT H SGIT LQRIG+GLF + M++ LVEAKR++ AR++GLIDSPK
Sbjct: 368 YDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLIDSPK 427
Query: 438 AIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRXXXXXXXXXXXXXXXFINT 497
+VP+S WLLPQY+LV I DVF IVG+QELFYDQMPE MR F++T
Sbjct: 428 EVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSFVST 487
Query: 498 GVIEVVEAIT--H-RSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVLED 554
G+I V+ I+ H WLV+NLNRAHLDY+YW++A L+A++LC +++IA F+YKK L+D
Sbjct: 488 GIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVSLCFYLFIANHFLYKK-LQD 546
Query: 555 ESKE 558
+ +
Sbjct: 547 KDDD 550
|
|
| TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
Identities = 237/553 (42%), Positives = 333/553 (60%)
Query: 29 SSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFP 88
SS GGW +A FII VE+A+RFAYYG++ NLI YLT L + TA AA +VN W G +S+ P
Sbjct: 29 SSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANVNAWSGTASLLP 88
Query: 89 LLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPL-------------HYRKAVF 135
LLGAFVADS+LGRF TIL +S +Y +G+ +L+L+ ++IP ++ F
Sbjct: 89 LLGAFVADSFLGRFRTILAASALYIVGLGVLTLS-AMIPSDCKVSNLLSSCSPRFQVITF 147
Query: 136 FTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195
F+ALY++A+ +GGHKPCVQ F ADQFDE+ P++ AKSSFFNWWY G+ FG + V
Sbjct: 148 FSALYLVALAQGGHKPCVQAFGADQFDEKEPEECKAKSSFFNWWYFGMCFGTLTTLWVLN 207
Query: 196 YLQDNVGWXXXXXXXXXXXXXXXXXXXXXIKRYRK--QAPVGSPFTTVAQVFVATARKWR 253
Y+QDN+ W YR + SPF + V+VA + W
Sbjct: 208 YIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFVRIGNVYVAAVKNWS 267
Query: 254 VSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNP 313
VS LD +G + + + Q FL+KA++ +N
Sbjct: 268 VSA-------------LDVAAAEERLGLV--SCSSSQQFSFLNKALVA---------KNG 303
Query: 314 WRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPAS 373
CS++++EE K V+RL PIWL+CL+++ + Q TFFTKQG+TM RSI +++ PA+
Sbjct: 304 --SCSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPAT 361
Query: 374 LQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAK 422
LQS + LSI++ +P+ T GITMLQRIG G+F S L M+VAALVE K
Sbjct: 362 LQSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMK 421
Query: 423 RVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRXXXX 482
R++TA + GL+DSP A VP+S+WWL+PQY+L I DVF +VGLQE FYDQ+P +R
Sbjct: 422 RLKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGL 481
Query: 483 XXXXXXXXXXXFINTGVIEVVEAITHRS----WLVDNLNRAHLDYFYWVLAGLSALNLCV 538
F+++ +I ++E T +S W +NLN+AHLDYFYW+LA LS + L
Sbjct: 482 ALYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGLAS 541
Query: 539 FIWIAKRFVYKKV 551
++++AK +V K++
Sbjct: 542 YLYVAKSYVSKRL 554
|
|
| TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
Identities = 229/567 (40%), Positives = 334/567 (58%)
Query: 17 EHTENKVSHHKISSK----GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT 72
E+ + V H S++ G W AA FII VE+A+RFA YG+ NLI YLT L + TA
Sbjct: 12 EYVIDAVDHRGFSARRSITGRWRAAWFIIGVEVAERFANYGIGSNLISYLTGPLGQSTAV 71
Query: 73 AAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH--- 129
AA +VN W GIS+I PLLGAFVAD++LGR+ TI+++SFIY +G+ L+L+ +IP +
Sbjct: 72 AAANVNAWSGISTILPLLGAFVADAFLGRYITIIIASFIYVLGLAFLTLSAFLIPNNTEV 131
Query: 130 ------YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGI 183
+ A+FF +LY++A+G+ GHKPCVQ F ADQFDE+NP++ +SSFFNWWYL +
Sbjct: 132 TSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFGADQFDEKNPQENSDRSSFFNWWYLSM 191
Query: 184 VFGASAAVLVAIYLQDNVGWXXXXXXXXXXXXXXXXXXXXXIKRYR----KQAPVGSPFT 239
G A+LV +Y+Q+NV W K YR +Q +PFT
Sbjct: 192 CAGIGLAILVVVYIQENVSWALGFGIPCVFMVISLVLFVLGRKSYRFSKTRQEEETNPFT 251
Query: 240 TVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAM 299
+ +VF + R++ + D + ++ ++ R+ +L FL+KA+
Sbjct: 252 RIGRVFFVAFKNQRLNSS---------------DLCKVELIEANRSQESPEELSFLNKAL 296
Query: 300 IIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTM 359
++ D E C VE+ ++RLIP+WL+ L ++ Q TFFTKQG TM
Sbjct: 297 LVPN-DSDEGEV----ACKSRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTM 351
Query: 360 RRSIGSNFQVPPASLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFT 408
R+I ++PPASLQ L+ +SI++ VP+ IT GIT L+RIG G+
Sbjct: 352 ERTIFPGVEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVL 411
Query: 409 SILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQEL 468
+ LTM+VAALVE+KR+ TA+E GLID PK +P+SIWWL PQY+L+ + DV +VG+QE
Sbjct: 412 ATLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEF 471
Query: 469 FYDQMPEAMRXXXXXXXXXXXXXXXFINTGVIEVVEAITH----RSWLVDNLNRAHLDYF 524
FY Q+P +R +++ +I +++ T SW NLNRAHLDYF
Sbjct: 472 FYSQVPTELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNLNRAHLDYF 531
Query: 525 YWVLAGLSALNLCVFIWIAKRFVYKKV 551
YW+LA +SA+ F++I+K ++Y++V
Sbjct: 532 YWLLAVVSAVGFFTFLFISKSYIYRRV 558
|
|
| TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 226/559 (40%), Positives = 328/559 (58%)
Query: 29 SSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFP 88
SS GGW +A +II VE+ +RFAY+G+ NLI YLT L + TATAA +VN W G +SI P
Sbjct: 29 SSTGGWRSAWYIIGVEVGERFAYFGIGSNLITYLTGPLGQSTATAAVNVNTWSGTASILP 88
Query: 89 LLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPL-------HYRKA-------- 133
+LGAF+AD+YLGR+ TI+++S IY +G+ LL+L+ +I + H R A
Sbjct: 89 VLGAFIADAYLGRYRTIVVASLIYILGLGLLTLSSILILMGLSEQRQHNRNASAKPFFWV 148
Query: 134 --VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191
+FF +LY++A+G+GGHKPCVQ F ADQFD +PK++ ++ SFFNWW+L + G + ++
Sbjct: 149 NILFFCSLYLVAIGQGGHKPCVQAFGADQFDVGDPKERISRGSFFNWWFLSLSAGITLSI 208
Query: 192 LVAIYLQDNVGWXXXXXXXXXXXXXXXXXXXXXIKRYR----KQAPVGSPFTTVAQVFVA 247
+V +Y+QDNV W K YR + + F + +VF+
Sbjct: 209 IVVVYVQDNVNWALGFGIPCLFMVMALALFLFGRKTYRYPRGDREGKNNAFARIGRVFLV 268
Query: 248 TARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLA 307
+ ++ TH G + ++G K+ QL FL KA++ E +
Sbjct: 269 AFKNRKLKLTHSG---------------QLEVGSYKKC---KGQLEFLAKALLPGEGGV- 309
Query: 308 SRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNF 367
P CS VE+ ++RLIPIW++ ++ + Q TFFTKQG T+ R I F
Sbjct: 310 ----EP---CSSRDVEDAMALVRLIPIWITSVVSTIPYAQYATFFTKQGVTVDRKILPGF 362
Query: 368 QVPPASLQSLVGLSILVAVP-----------VITGHRSGITMLQRIGIGLFTSILTMIVA 416
++PPAS Q+L+GLSI ++VP +IT SGITMLQRIG G+ S L M+VA
Sbjct: 363 EIPPASFQALIGLSIFISVPTYERVFLPLARLITKKPSGITMLQRIGAGMVLSSLNMVVA 422
Query: 417 ALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEA 476
ALVE KR+ TA+E+GL+D P A +P+SIWW +PQYLL+ + DVF +VG QE FYDQ+P
Sbjct: 423 ALVEMKRLETAKEHGLVDRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQEFFYDQVPTE 482
Query: 477 MRXXXXXXXXXXXXXXXFINTGVIEVVEAITHR----SWLVDNLNRAHLDYFYWVLAGLS 532
+R F++ +I V+ T + SW NLNRAH+DYFYW+LA +
Sbjct: 483 LRSIGLALSLSAMGLASFLSGFLITVINWATGKNGGDSWFNTNLNRAHVDYFYWLLAAFT 542
Query: 533 ALNLCVFIWIAKRFVYKKV 551
A+ F+ +++ +VY++V
Sbjct: 543 AIGFLAFLLLSRLYVYRRV 561
|
|
| TAIR|locus:2009542 AT1G22570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 230/551 (41%), Positives = 329/551 (59%)
Query: 29 SSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFP 88
SS GGW +A FII VE+A+RFAY+G+A NLI YLT L + TA AA +VN W G +SI P
Sbjct: 29 SSTGGWRSAWFIIGVEVAERFAYFGIACNLITYLTGPLGQSTAKAAVNVNTWSGTASILP 88
Query: 89 LLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVI--------------PLHYRKAV 134
+LGAFVAD+YLGR+ TI+++S IY +G+ LL+L+ S+I P + +
Sbjct: 89 ILGAFVADAYLGRYRTIVVASLIYILGLGLLTLSASLIIMGLSKQRNDASAKPSIWVNTL 148
Query: 135 FFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194
FF +LY++A+G+GGHKPCVQ F ADQFD +PK+ A+ SFFNWW+L + G S +++V
Sbjct: 149 FFCSLYLVAIGQGGHKPCVQAFGADQFDAEDPKEVIARGSFFNWWFLSLSAGISISIIVV 208
Query: 195 IYLQDNVGWXXXXXXXXXXXXXXXXXXXXXIKRYRKQAPVGS-PFTTVAQVFVATARKWR 253
Y+Q+NV W K YR P G + F R +
Sbjct: 209 AYVQENVNWAFGFGIPCLFMVMALAIFLLGRKIYRY--PKGHHEEVNSSNTFARIGRVFV 266
Query: 254 VSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRER-N 312
++ + R + H L+ D + GQS++ R ++L FL KAMI SRE
Sbjct: 267 IAFKNRKLR-LEHS-SLELDQGLLEDGQSEK---RKDRLNFLAKAMI-------SREGVE 314
Query: 313 PWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPA 372
P CS V++ K ++RLIPIW++ ++ + Q TFFTKQG T+ R I ++P A
Sbjct: 315 P---CSGRDVDDAKALVRLIPIWITYVVSTIPYAQYITFFTKQGVTVDRRILPGVEIPAA 371
Query: 373 SLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEA 421
SL S VG+SIL++VP+ IT GITMLQRIG G+ S+ M++AALVE+
Sbjct: 372 SLLSFVGVSILISVPLYERVFLPIARKITKKPFGITMLQRIGAGMVLSVFNMMLAALVES 431
Query: 422 KRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRXXX 481
KR++ ARE+GL+D P VP+SIWW +PQYLL+ + D+F +VG QE FYDQ+P +R
Sbjct: 432 KRLKIAREHGLVDKPDVTVPMSIWWFVPQYLLLGMIDLFSMVGTQEFFYDQVPTELRSIG 491
Query: 482 XXXXXXXXXXXXFINTGVIEVVEAITHRS-WLVDNLNRAHLDYFYWVLAGLSALNLCVFI 540
F++ +I +++ T + W NLNRAH+DYFYW+LA +A+ F+
Sbjct: 492 LSLSLSAMGLSSFLSGFLISLIDWATGKDGWFNSNLNRAHVDYFYWLLAAFTAIAFFAFL 551
Query: 541 WIAKRFVYKKV 551
+I+K +VY+++
Sbjct: 552 FISKMYVYRRL 562
|
|
| TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 222/567 (39%), Positives = 334/567 (58%)
Query: 17 EHTENKVSHHKISSK----GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT 72
E+ + V H ++++ G W AA+FII VE+A+RFAYYG+ NLI YLT L E TA
Sbjct: 12 EYVTDAVDHRGLAARRSNTGRWRAALFIIGVEVAERFAYYGIGSNLISYLTGPLGESTAV 71
Query: 73 AAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIP----- 127
AA +VN W GI+++ P+LGAFVAD++LGR+ TI++SS IY +G+ L+L+ +IP
Sbjct: 72 AAANVNAWSGIATLLPVLGAFVADAFLGRYRTIIISSLIYVLGLAFLTLSAFLIPNTTEV 131
Query: 128 ----LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGI 183
+ +FF +LY++A+G+ GHKPCVQ F ADQFDE++ ++K +SSFFNWWYL +
Sbjct: 132 TSSTSSFLNVLFFFSLYLVAIGQSGHKPCVQAFGADQFDEKDSQEKSDRSSFFNWWYLSL 191
Query: 184 VFGASAAVLVAIYLQDNVGWXXXXXX--XXXXXXXXXXXXXXXIKRY--RKQAPVGSPFT 239
G A+LV +Y+Q+ W I RY R+ +PFT
Sbjct: 192 SAGICFAILVVVYIQEEFSWAFGFGIPCVFMVISLVLFVSGRRIYRYSKRRHEEEINPFT 251
Query: 240 TVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAM 299
+ +VF + R+S + +L + + K++ F +KA+
Sbjct: 252 RIGRVFFVALKNQRLSSS-----------DLCKVELEANTSPEKQS--------FFNKAL 292
Query: 300 IIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTM 359
++ D +S+ N + + VE+ +IRLIP+W + L ++ Q TFFTKQG TM
Sbjct: 293 LVPN-D-SSQGENASKS---SDVEDATALIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTM 347
Query: 360 RRSIGSNFQVPPASLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFT 408
R+I ++PPASLQ +G+SI++ VP+ IT GIT L+RIG G+
Sbjct: 348 DRTILPGVKIPPASLQVFIGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRIGTGIVL 407
Query: 409 SILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQEL 468
S +TM++AALVE KR+ TA+E+GLID P+A +P+SIWWL+PQYLL+ + DV+ +VG+QE
Sbjct: 408 STITMVIAALVEFKRLETAKEHGLIDQPEATLPMSIWWLIPQYLLLGLADVYTLVGMQEF 467
Query: 469 FYDQMPEAMRXXXXXXXXXXXXXXXFINTGVIEVVEAITH----RSWLVDNLNRAHLDYF 524
FY Q+P +R +++ +I +++ T SW NLNRAHLDYF
Sbjct: 468 FYSQVPTELRSIGLALYLSALGVGSLLSSLLISLIDLATGGDAGNSWFNSNLNRAHLDYF 527
Query: 525 YWVLAGLSALNLCVFIWIAKRFVYKKV 551
YW+LA +SA+ F++I+K ++Y++V
Sbjct: 528 YWLLAIVSAVGFFTFLFISKSYIYRRV 554
|
|
| TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
Identities = 216/548 (39%), Positives = 316/548 (57%)
Query: 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLG 91
G W AA+FII +E ++R +Y+GLA NL+ YLT +LN+ A ++VN W G++++ PLLG
Sbjct: 40 GAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLG 99
Query: 92 AFVADSYLGRFNTILLSSFIYFMGMVLLSLA---VSVIPLHY------RKA---VFFTAL 139
F+AD+YLGR+ T+L+++ IY MG+VLL+++ + P H RKA FF A+
Sbjct: 100 GFIADAYLGRYATVLVATTIYLMGLVLLTMSWFIPGLKPCHQEVCVEPRKAHEVAFFIAI 159
Query: 140 YILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199
Y++++G GGHKP +++F ADQFD+ + +++ K SFFNWW + + G AV Y++D
Sbjct: 160 YLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGILTAVTAVAYIED 219
Query: 200 NVGWXXXXXXXXXXXXXXXXXXXXXIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHG 259
VGW YR + P GSP T + QVFVA K + +
Sbjct: 220 RVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVAAIAKRNLP--YP 277
Query: 260 GGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMII-DEIDLASRERNPWRLCS 318
+ H + +T+ S R + T L+FLDKA II D+ LA +++PWRL +
Sbjct: 278 SDPSLLH------EVSKTEF-TSGRLLCHTEHLKFLDKAAIIEDKNPLALEKQSPWRLLT 330
Query: 319 LNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLV 378
L +VEE KL+I +IPIW S L F Q TFF KQ TM R IG F VPPAS+ +L
Sbjct: 331 LTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGG-FTVPPASMFTLT 389
Query: 379 GLSILVA--------VPV---ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTA 427
L+++++ VP+ IT ++ GI +LQRIG G+ S++TMI+AALVE +R+
Sbjct: 390 ALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEKQRLDRT 449
Query: 428 RENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRXXXXXXXXX 487
N P+S+ WL PQ++++ D F +VGLQE FY Q+P++MR
Sbjct: 450 NNNK---------PMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLS 500
Query: 488 XXXXXXFINTGVIEVVEAITH----RSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIA 543
F+N +I V+ + +SW +LN + LD FYW LAG+ A N+CVF+ +A
Sbjct: 501 VIGAASFLNNLLITAVDTLAENFSGKSWFGKDLNSSRLDRFYWFLAGVIAANICVFVIVA 560
Query: 544 KRFVYKKV 551
KR YK V
Sbjct: 561 KRCPYKSV 568
|
|
| TAIR|locus:2206991 AT1G72140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 117/247 (47%), Positives = 161/247 (65%)
Query: 317 CSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQS 376
C +VEE K V+ LIPIWL L+F + Q TFFTKQGSTM RSI S QVP A+LQ
Sbjct: 305 CDSYEVEEAKAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTMDRSISSTLQVPAATLQC 364
Query: 377 LVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVR 425
+ L+ILV +P+ IT +GIT LQRI G+F SI++M++AALVE KR++
Sbjct: 365 FISLAILVFIPIYDRLFVPIARSITRKPAGITTLQRISTGIFLSIISMVIAALVEMKRLK 424
Query: 426 TARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRXXXXXXX 485
TAR++GL+DSPKA VP+S+ WL+PQY+L + DVF +VGLQE FY ++P +R
Sbjct: 425 TARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMGLALY 484
Query: 486 XXXXXXXXFINTGVIEVVEAITHRS----WLVDNLNRAHLDYFYWVLAGLSALNLCVFIW 541
F+++ ++ V+E T +S W +NLN+AHLDYFYW+LA LS+L ++
Sbjct: 485 LSIIGIGNFLSSFMVSVIEEATSQSGQVSWFSNNLNQAHLDYFYWLLACLSSLAFIFTVY 544
Query: 542 IAKRFVY 548
AK ++Y
Sbjct: 545 FAKSYLY 551
|
|
| TAIR|locus:2030316 AT1G72130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 104/249 (41%), Positives = 158/249 (63%)
Query: 317 CSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQS 376
C L ++EE K V+RLIPIW++ ++++ + Q TFFTKQG+TM RSI VP A+LQS
Sbjct: 293 CELAEIEEAKAVLRLIPIWITSVVYTIVHAQSPTFFTKQGATMDRSISPGLLVPAATLQS 352
Query: 377 LVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVR 425
+ LS++V +P+ T + SGIT LQRIG G+F SIL M++AALVE KR++
Sbjct: 353 FINLSVVVFIPIYDRLLVPFARSFTQNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQ 412
Query: 426 TARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRXXXXXXX 485
AR+ + +P+S+WWL+PQY++ + D+F +VGLQE FY Q+P +R
Sbjct: 413 AARD-------ELSIPMSVWWLIPQYVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALN 465
Query: 486 XXXXXXXXFINTGVIEVVEAITH----RSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIW 541
++++ +I V++ IT+ RSW ++L++AHLDYFYW+LA L + ++W
Sbjct: 466 LSIYGAGNYLSSFMISVIDKITNQYGQRSWFDNDLDQAHLDYFYWLLACLGFIGFAFYLW 525
Query: 542 IAKRFVYKK 550
AK +VY +
Sbjct: 526 FAKSYVYSR 534
|
|
| TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 7.8e-95, Sum P(2) = 7.8e-95
Identities = 159/431 (36%), Positives = 235/431 (54%)
Query: 133 AVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192
AVFF ALY LA+G GG KP + T ADQFDE +PKDK K SFFNWW I FG A
Sbjct: 147 AVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATT 206
Query: 193 VAIYLQDNVGWXXXXXXXXXXXXXXXXXXXXXIKRYRKQAPVGSPFTTVAQVFVATARKW 252
V +Y+QDNVGW + YR + P+GSPFT +A+V VA+ RK
Sbjct: 207 VLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKA 266
Query: 253 RVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERN 312
R + R Y ++ KR I T+ LRFL++A L + +
Sbjct: 267 REPMSSDSTR-FYELPPMEYASKRAF------PIHSTSSLRFLNRA------SLKTGSTH 313
Query: 313 PWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPA 372
WRLC++ +VEE K +++++P+ + S +L Q+ T F KQG+T+ R + +NF +PPA
Sbjct: 314 KWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPA 373
Query: 373 SLQSLVGLSILVAVPV-----------ITGHRSGITMLQRIGIGLFTSILTMIVAALVEA 421
SL S+LV++ + +TG+ GIT+LQR+GIG+ IL MI+A++ E
Sbjct: 374 SLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITER 433
Query: 422 KRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRXXX 481
R++ A E+GL +P+SI+ LLPQY+L+ + D F + E FYDQ PE+M+
Sbjct: 434 YRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLG 493
Query: 482 XXXXXXXXXXXXFINTGVIEVVEAITH---RSWLVDNLNRAHLDYFYWVLAGLSALNLCV 538
F+++ ++ V IT R W+ +NLN + LD +Y A L+ LN +
Sbjct: 494 TSYTSTSMAVGYFMSSILLSSVSQITKKQGRGWIQNNLNESRLDNYYMFFAVLNLLNFIL 553
Query: 539 FIWIAKRFVYK 549
F+ + + + Y+
Sbjct: 554 FLVVIRFYEYR 564
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M1I2 | PTR46_ARATH | No assigned EC number | 0.5769 | 0.9358 | 0.9459 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 561 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 9e-77 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 2e-30 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-27 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 1e-16 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 2e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-08 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 9e-08 | |
| PRK10207 | 489 | PRK10207, PRK10207, dipeptide/tripeptide permease | 4e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-06 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 9e-77
Identities = 131/400 (32%), Positives = 203/400 (50%), Gaps = 40/400 (10%)
Query: 102 FNTILLSSFIYFMGMVLLSLAVSVI---PLHYRKAVFFTALYILAVGEGGHKPCVQTFAA 158
F TILL S IY +G VLL+L P+ A+F+ LY++A+G GG KP V F A
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQV--ALFYIGLYLIALGTGGIKPNVSAFGA 58
Query: 159 DQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALAL 218
DQFDE + FF+W+Y I G+ A ++ YLQ NVG+ +GFG+ A + LAL
Sbjct: 59 DQFDET---QDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLAL 115
Query: 219 AIFLIGIKRYRKQAP-VGSPFTT-VAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKR 276
+FL+G +RY+K+AP GSPFT +A + A + R + +Y E
Sbjct: 116 LVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKN-RKLQLPKDSHWLYWALEK------ 168
Query: 277 TDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWL 336
+KR+I++T + + +I + + V ++ ++ ++PIW
Sbjct: 169 ----YNKRSISQT---KVHTRVAVIFIP--LPKFWALF--DQQGSVWLLQAILLMLPIWA 217
Query: 337 SCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVP----VITG- 391
++ + QL T +Q TM R I F++PPAS QS L++L+ +P ++
Sbjct: 218 FWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPL 277
Query: 392 --HRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLP 449
+ G+T+ QR G+G+F I+ +AA+VEAKR R A GL SP VP+ I W LP
Sbjct: 278 LRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLT-SPGWTVPLFILWSLP 336
Query: 450 QYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISII 489
+ + + G+ G E D +P +M S+ +
Sbjct: 337 ELFISGV----GLAGALEFAPDALPSSMMSLWTLLSAAAA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-30
Identities = 98/464 (21%), Positives = 174/464 (37%), Gaps = 74/464 (15%)
Query: 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIF-------P 88
I VE+ +RF+YYG+ LI YL + D + G+ S + P
Sbjct: 22 GLYLIFFVELWERFSYYGMRAILILYLYY---QLGDGLGFDETHATGLFSAYGSLVYLTP 78
Query: 89 LLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGG 148
++G ++AD LG TI+L + + +G ++L+ I + L ++ VG G
Sbjct: 79 IIGGWLADRVLGTRRTIVLGAILMAIGHLVLA-----ISSVSGPGGLYIGLALIIVGTGL 133
Query: 149 HKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFG 208
KP + + + + PKD + F +Y+GI G+ A ++ L N GW VGFG
Sbjct: 134 FKPNISSLLGELY----PKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFG 189
Query: 209 VMAGALALALAIFLIGIKRYRKQA----PVGSPFTTVAQVFVATARKWRVSETHGGGRGI 264
+ A + + L IFL+G + + P F + V
Sbjct: 190 LAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVM------------- 236
Query: 265 YHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEE 324
+ + N + + I + E +E
Sbjct: 237 -------------ILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF----DE 279
Query: 325 VKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILV 384
+ ++ IP++L ++F + Q+ + F+VPPA QSL I++
Sbjct: 280 RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIIL 339
Query: 385 AVPVI-------TGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPK 437
P++ + + +GL + L ++ L +GL
Sbjct: 340 FSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF---GGPSGL----- 391
Query: 438 AIVPISIWWLLPQYLLVSICDVF-GIVGLQELFYDQMPEAMRSI 480
+S+WWL+ Y+L S ++F VGL + P A++S
Sbjct: 392 ----VSVWWLVLSYVLQSFGELFISPVGL-SMVTKLAPPALKSF 430
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 111/403 (27%), Positives = 182/403 (45%), Gaps = 72/403 (17%)
Query: 49 FAYYGLAGNLIQYLTNVL--NEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTIL 106
F+YYG+ L+ YL N L NE TAT + + + PL+GA +ADS+LG+F TIL
Sbjct: 1 FSYYGMKTILVLYLLNFLGWNEDTATNIYHT--FTYLCYLTPLIGALIADSWLGKFKTIL 58
Query: 107 LSSFIYFMGMVLLSLA---VSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDE 163
S +Y +G L SL PLH A+ L ++A+G GG KPCV F DQF+E
Sbjct: 59 YLSLVYVVGHALASLGAVPSLGHPLH--DALSLVGLALIALGTGGIKPCVSAFGGDQFEE 116
Query: 164 RNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVG-------WAVGFGVMAGALAL 216
R + FF+++Y I G+ + ++ L+ +VG + + FGV + L
Sbjct: 117 RQ---LSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTL 173
Query: 217 ALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKR 276
AL +F +G K Y+K+ PVG+ + V + V +K R
Sbjct: 174 ALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR------FRTR---SEDWP------ 218
Query: 277 TDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWL 336
+L +LD A + R+ + K ++R++ +++
Sbjct: 219 --------------RLHWLDWA----------APKYLIRM-----IRSTKRLLRVLFLFI 249
Query: 337 SCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITG----- 391
MF + Q + +T Q + M +G F + P +Q++ L +L+ VP+
Sbjct: 250 PLPMFWALFDQQGSRWTLQATRMDGDVGL-FPIQPDQMQAVNPLLVLILVPIFDYVVYPA 308
Query: 392 -HRSGI--TMLQRIGIGLFTSILTMIVAALVEAKRVRTARENG 431
+ G T L+++ +G+ + L VAAL++ K T E
Sbjct: 309 LAKCGTRFTSLRKMAVGMLLAALAFAVAALLQNKINPTLPEEP 351
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 79/424 (18%), Positives = 145/424 (34%), Gaps = 52/424 (12%)
Query: 40 IIMVEMAQRFAYYGLAGNLIQYL--TNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADS 97
+ VE+ +RF+YYG+ G L YL L A + + + +G + D
Sbjct: 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74
Query: 98 YLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFA 157
G T++L + +G +L++++ + F L +AVG G K +
Sbjct: 75 VWGTKKTMVLGGIVLMLGHFMLAMSIYP-------DLIFYGLGTIAVGSGLFKANPSSMV 127
Query: 158 ADQFDE-RNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALAL 216
++ P+ G F +Y+ I G+ + L+A + +N G+ VGF + A + +
Sbjct: 128 GKLYERGDMPRRDGG----FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVI 183
Query: 217 ALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARK---WRVSETHGGGRGIYHGHELDDD 273
L F G R V P + + + H +
Sbjct: 184 GLLTFFAGRHMLRDIGSVPDPLSGQGK--TYGKLLLALLAALALVFFCAWLMHHVVI--- 238
Query: 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIP 333
L + + I R RL ++ + + I
Sbjct: 239 ------------------ANILLMTVTLAVIIFFFRLAFKPRLDAVAR----NKMYAYIV 276
Query: 334 IWLSCLMFSCILVQLHTFFTKQG-STMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGH 392
++L ++F + Q+ T + M + VP QSL ++V PV+
Sbjct: 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLG-MSVPVIWFQSLNPFWVVVGSPVLA-- 333
Query: 393 RSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYL 452
T L R G T + + A + A D+ S W+++ YL
Sbjct: 334 -MIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGG---LTSPWFMVLIYL 389
Query: 453 LVSI 456
++
Sbjct: 390 FQTL 393
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-12
Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 10/199 (5%)
Query: 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVA 95
A +++ +++ + F++YG+ LI YLTN L A + + + + + P+LG F+A
Sbjct: 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLA 69
Query: 96 DSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQT 155
D LG ++L + + +G V+L A + P + + +L I+ G G K V
Sbjct: 70 DKVLGNRMAVMLGALLMAIGHVVLG-ASEIHP-----SFLYLSLAIIVCGYGLFKSNVSC 123
Query: 156 FAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALA 215
+ ++ +P+ G F+ Y G+ A + Y Q+ WA+GFG+ A +
Sbjct: 124 LLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179
Query: 216 LALAIFLIGIKRYRKQAPV 234
L IFL G + + V
Sbjct: 180 AGLVIFLCGNRHFTHTRGV 198
|
Length = 493 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 17/191 (8%)
Query: 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNV-LNEPTATAAQDVNNWVGISSIFPLLGAFVAD 96
+ + + L+ L ++ L+ A + + LL +++D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYA--LGSLLAGYLSD 59
Query: 97 SYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTF 156
+ GR +LL ++ +G +LL+ A S+ + ++L +G G P
Sbjct: 60 RF-GRRRVLLLGLLLFALGSLLLAFASSL-------WLLLVGRFLLGLGGGALYPAAAAL 111
Query: 157 AADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALAL 216
A+ F + + + G GA L+ L +++GW F ++A L
Sbjct: 112 IAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165
Query: 217 ALAIFLIGIKR 227
+ L ++
Sbjct: 166 LALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 10/188 (5%)
Query: 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFV 94
A I +E+ +RF YYGL G + YL L A + +++ + +G ++
Sbjct: 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWL 80
Query: 95 ADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQ 154
D LG I+L + + +G L++ + + Y + +AVG G K
Sbjct: 81 GDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVY------MGMATIAVGNGLFKANPS 134
Query: 155 TFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGAL 214
+ + +++ +P+ GA F +Y+ I G+ ++L +L GW+V F + +
Sbjct: 135 SLLSTCYEKDDPRLDGA----FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM 190
Query: 215 ALALAIFL 222
+ + F
Sbjct: 191 LITVVNFA 198
|
Length = 500 |
| >gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYL 99
I VE+ +RF YYG+ G L + L A + + +G +V D L
Sbjct: 19 IFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL 78
Query: 100 GRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAAD 159
G TI+L + + +G + +++ + + F AL +AVG G K + +
Sbjct: 79 GTKRTIVLGAIVLAIGYFMTGMSL------LKPDLIFIALGTIAVGNGLFKANPASLLSK 132
Query: 160 QFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALA 219
+ ++P+ GA F +Y+ I G+ ++ +A + D G++V + + L +AL
Sbjct: 133 CYPPKDPRLDGA----FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALL 188
Query: 220 IFL 222
++
Sbjct: 189 VYF 191
|
Length = 489 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 10/207 (4%)
Query: 49 FAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLS 108
F L L L E + ++ + S+ L +A GR +
Sbjct: 6 FLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLA----GRLSDRFGR 61
Query: 109 SFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKD 168
+ +G++L +L + ++ + + +G G P AD F
Sbjct: 62 RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE--- 118
Query: 169 KGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRY 228
+ G GA+ L+ L GW F ++A LA + + + R
Sbjct: 119 ---RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175
Query: 229 RKQAPVGSPFTTVAQVFVATARKWRVS 255
++ P V +
Sbjct: 176 PPESKRPKPAEEAPAPLVPAWKLLLRD 202
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 13/186 (6%)
Query: 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADS 97
+ + + F YYGL L YL VL A A + + G+ I L +
Sbjct: 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGL-LLSLFGLGGILGALLGGLLSD 236
Query: 98 YLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFA 157
LGR +LL +G++L +L + ++ L A+ AL +L G G P + T A
Sbjct: 237 RLGRRRLLLL------IGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290
Query: 158 ADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALA 217
++ +G S FN + G + L+A L D G+ F ++A LA
Sbjct: 291 SELAPPEA---RGTASGLFNTFGS---LGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 218 LAIFLI 223
+ L+
Sbjct: 345 ALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.94 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.94 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.94 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.93 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.93 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.93 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.93 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.92 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.92 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.92 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.92 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.92 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.92 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.91 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.91 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.91 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.91 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.91 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.91 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.91 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.91 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.9 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.9 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.9 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.9 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.9 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.9 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.9 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.9 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.89 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.89 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.88 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.88 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.87 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.87 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.87 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.87 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.86 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.85 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.85 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.84 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.83 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.82 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.82 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.82 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.82 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.79 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.78 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.78 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.78 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.77 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.77 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.77 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.76 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.76 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.76 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.76 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.75 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.74 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.73 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.73 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.73 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.72 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.71 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.7 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.69 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.68 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.66 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.66 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.64 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.59 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.56 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.54 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.54 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.53 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.52 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.51 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.51 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.51 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.5 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.5 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.5 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.5 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.49 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.49 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.48 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.47 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.47 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.47 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.47 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.45 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.45 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.44 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.44 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.43 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.42 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.42 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.41 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.41 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.4 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.37 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.37 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.37 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.36 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.36 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.35 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.35 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.35 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.34 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.33 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.33 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.33 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.32 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.31 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.31 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.31 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.3 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.29 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.28 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.27 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.26 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.25 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.25 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.24 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.24 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.23 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.23 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.22 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.22 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.21 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.2 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.19 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.19 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.19 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.18 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.17 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.15 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.15 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.15 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.14 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.14 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.14 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.13 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.12 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.11 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.1 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.1 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.09 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.09 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.08 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.08 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.07 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.06 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.06 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.06 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.03 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.02 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.02 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.02 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.01 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.01 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.98 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.95 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.89 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.88 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.87 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.85 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.83 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.8 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.75 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.73 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.73 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.68 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.62 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.6 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.6 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.59 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.57 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.53 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.53 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.53 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.51 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.47 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.45 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.44 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.39 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.35 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.33 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.32 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.32 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.32 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.3 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.24 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.21 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.12 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.06 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.8 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.75 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.73 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.63 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.61 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.61 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.55 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.38 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.37 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.3 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.26 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.14 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.03 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.95 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.85 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.71 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.55 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.46 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.37 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.24 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.03 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.87 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.79 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 95.69 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.44 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.26 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.77 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.74 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.53 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 94.27 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.51 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 92.24 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 91.52 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 89.45 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 89.2 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 88.07 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 87.61 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 87.21 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 84.21 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 81.89 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.13 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 80.91 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=323.34 Aligned_cols=505 Identities=45% Similarity=0.759 Sum_probs=428.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHH
Q 008565 30 SKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSS 109 (561)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~ 109 (561)
....|+...+++..+.++..++|++...+..|+.+.+|.+...+.-.++.+.......++++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc---cc-------c---cc-----hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCcccc
Q 008565 110 FIYFMGMVLLSLAVSV---IP-------L---HY-----RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGA 171 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~---~~-------~---~~-----~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 171 (561)
++..+|..++.+.+.. .+ . .. ....++.++-+.++|.|+..|...++-+|++++..+.++..
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 9999998777666432 00 0 11 23466777788899999999999999999999776666666
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhh
Q 008565 172 KSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARK 251 (561)
Q Consensus 172 r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
+.+.+.+++...++|..++-.+..++.++.||...|-+..+..++++++++...+.++.++|.++++..+.+++....++
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k 271 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK 271 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999888888898889999999999999999999
Q ss_pred cccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhccccc-ccccCCCCcccchhhhHHHHHHHH
Q 008565 252 WRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDL-ASRERNPWRLCSLNQVEEVKLVIR 330 (561)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 330 (561)
++...+.+++ +...+. .. ......+++.+++|.+.+..+.+. .+....+|+.|+.+.+++.|.+++
T Consensus 272 ~~~~~~~~~~-------~~~~~~-~~-----~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr 338 (571)
T KOG1237|consen 272 RKAVVSLDPE-------ELYYDC-TD-----SVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLR 338 (571)
T ss_pred HhccCCCcch-------hccccc-cc-----cccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhh
Confidence 9877776543 110000 00 011122455677777766544321 122457899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhc-----------CCCCCCch
Q 008565 331 LIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITG-----------HRSGITML 399 (561)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 399 (561)
.++++....++++++.|..+++..|...+++++++.+.+|++.++.+..+..++..|+++| ..++.+.+
T Consensus 339 ~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~l 418 (571)
T KOG1237|consen 339 LLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPL 418 (571)
T ss_pred hhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChh
Confidence 9999999999999999999999999999999997339999999999999999999999333 22456888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHH
Q 008565 400 QRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRS 479 (561)
Q Consensus 400 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg 479 (561)
.++++|+.+..+++...+..|.+|...... +.+..++++.+|.+++|++.|++|.+.+++..++.++++|++||+
T Consensus 419 qrig~G~~~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS 493 (571)
T KOG1237|consen 419 QRIGIGLVLSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKS 493 (571)
T ss_pred heeeccchHHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHH
Confidence 999999999999999999999988877754 111235799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHhhhcccc--cCCccc-CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008565 480 IGAAAYISIIGVGSFINTGVIEVVEAIT--HRSWLV-DNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVL 552 (561)
Q Consensus 480 ~~~g~~~~~~~~g~~lg~~v~~~i~~~~--~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 552 (561)
.+++++.+..++|+.++.+++..+...+ ..+|++ +++|.++++++||+++.+..++.+.+..+.++++.++.+
T Consensus 494 ~~~al~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 494 VATALWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 9999999999999999999999888777 348999 999999999999999999999999988887776655543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=307.59 Aligned_cols=455 Identities=22% Similarity=0.349 Sum_probs=345.1
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchH
Q 008565 28 ISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLN----EPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFN 103 (561)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~ 103 (561)
++..+|||.++.++..+++++++||++...+..|+..+++ +|.+++.-+.+.+.......++++||++||++|+|+
T Consensus 14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 4556799999999999999999999999999999998888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHH
Q 008565 104 TILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGI 183 (561)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 183 (561)
++.+|.++.++|.+.+.... -.+...++++..++++|.|...|+..++++|++|+++++ |-.+++++|++.
T Consensus 94 tI~lGail~~iGh~~L~~~~-----~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~i 164 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISS-----VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGI 164 (498)
T ss_pred HHHHHHHHHHHHHHHHhccc-----cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEe
Confidence 99999999999999988871 025778899999999999999999999999999999876 888999999999
Q ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCC--CCch------hHHHHHHHHHHhhcccc
Q 008565 184 VFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPV--GSPF------TTVAQVFVATARKWRVS 255 (561)
Q Consensus 184 ~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~ 255 (561)
|+|+.++|.+.+++.++.||+..|..+++...++++..++.+++....... .++. +.....+......-
T Consensus 165 NiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 241 (498)
T COG3104 165 NIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL--- 241 (498)
T ss_pred ehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999988887765544321 1111 11111111111100
Q ss_pred cCCCCCCccccCCCCCCCcccccccccccccccccchhh-hhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHH
Q 008565 256 ETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRF-LDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPI 334 (561)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (561)
++ .. .+ . +..+. ............ -++...|. +.. ++||+++..+++
T Consensus 242 --------~~---~~-------------l~--~-~~~~~~~~~~~i~~~~~~-~~~~~~~~---~~~-~er~r~~~~~~L 289 (498)
T COG3104 242 --------LT---LL-------------LN--Q-NTFSGVLLVISILIAIIY-FAEAFRSP---KVF-DERRRLLAAIPL 289 (498)
T ss_pred --------HH---HH-------------HH--H-HHHHHHHHHHHHHHHHHH-HHHHhccC---ccH-HHHHHHHHHHHH
Confidence 00 00 00 0 00000 000000000000 00111111 122 788999999999
Q ss_pred HHHHHHHHHHHhhccchheeeccc-ccccCCCceeeccccccchhhHHHHHHHHH-------hhcCCCCCCchhHHHHHH
Q 008565 335 WLSCLMFSCILVQLHTFFTKQGST-MRRSIGSNFQVPPASLQSLVGLSILVAVPV-------ITGHRSGITMLQRIGIGL 406 (561)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~g~ 406 (561)
++..++||+++.|.++.+..+..+ .+++.. +++++++++|++|++.++++.|+ +.++.+.++++.++.+|+
T Consensus 290 fl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl 368 (498)
T COG3104 290 FLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGL 368 (498)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHH
Confidence 999999999999999888777643 344434 68999999999999999999999 233456688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 008565 407 FTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYI 486 (561)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~ 486 (561)
.++..+++++........+ .....+.+|+++.+++.++||.+.+|...+++.+.+|+++.+..+|++.
T Consensus 369 ~l~g~~fl~l~~~~~~~~~------------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wf 436 (498)
T COG3104 369 ILAGLGFLILLLAGIWFGG------------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWF 436 (498)
T ss_pred HHHHHHHHHHHHHHHhhcC------------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999988876422110 0235788999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 487 SIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 487 ~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
+....|+.++..+.+.... +. ...+......+|+..+...++.........++
T Consensus 437 Lt~a~~~~l~g~va~~~~~-~~-----~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~ 489 (498)
T COG3104 437 LTVAAGQTLGGQVAGLTAV-TD-----PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK 489 (498)
T ss_pred HHHHHHHHhhceecccccc-cc-----hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999998874321 00 00112233456777666666666555555544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=302.91 Aligned_cols=453 Identities=17% Similarity=0.251 Sum_probs=318.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHH
Q 008565 30 SKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSS 109 (561)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~ 109 (561)
..+|||.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+.....+..+++|+++||++||||+++++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999339999999999
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 110 FIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
++++++.+++.++. .....++++|.++++|.|...|+..++++|++|+++++ |.+++++++++.|+|..+
T Consensus 89 ~~~~~g~~~~~~~~------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~ 158 (489)
T PRK10207 89 IVLAIGYFMTGMSL------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLI 158 (489)
T ss_pred HHHHHHHHHHHHhc------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHH
Confidence 99999999988872 12334568899999999999999999999999887522 678999999999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchhHHHHHHH-------HHHhhcccccCCCC
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQ--APVGSPFTTVAQVFV-------ATARKWRVSETHGG 260 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 260 (561)
||.+++++.++.||++.|++..+..+++++.+...++..+++ +|++++.+ ..+... ......+. ..
T Consensus 159 g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l~~~~~~~~~~~~~~~--~~-- 233 (489)
T PRK10207 159 SLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMS-FSKLLLVLLGSVVMIFVCAWL--MH-- 233 (489)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchh-hhhHHHHHHHHHHHHHHHHHH--Hh--
Confidence 999999999999999999997766666665555554443332 22222221 111110 00000000 00
Q ss_pred CCccccCCCCCCCcccccccccccccccccchhh-hhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHH
Q 008565 261 GRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRF-LDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCL 339 (561)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (561)
....... .......... . -.++..+ .+..++++.+..+.++....
T Consensus 234 ---------------------------~~~~~~~~~~~~~~i~~~-----~-f~~~~~~-~~~~~r~r~~~~~~l~~~~~ 279 (489)
T PRK10207 234 ---------------------------NVEVANLVLIVLSIVVTI-----I-FFREAFK-LDKTGRNKMFVAFVLMLEAV 279 (489)
T ss_pred ---------------------------hhhHHHHHHHHHHHHHHH-----H-HHHHHhc-CCHHHHHHHHHHHHHHHHHH
Confidence 0000000 0000000000 0 0000000 11133455555666677788
Q ss_pred HHHHHHhhccchheeecc-cccccCCCceeeccccccchhhHHHHHHHHHh-------hcCCCCCCchhHHHHHHHHHHH
Q 008565 340 MFSCILVQLHTFFTKQGS-TMRRSIGSNFQVPPASLQSLVGLSILVAVPVI-------TGHRSGITMLQRIGIGLFTSIL 411 (561)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~g~~~~~~ 411 (561)
++|..+.|..+.+..+.+ ..+.... ++.+++..++.+|++.+++..|+. .++..++++..++.+|+++.++
T Consensus 280 ~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~ 358 (489)
T PRK10207 280 VFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSL 358 (489)
T ss_pred HHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 899999988766655544 3444554 788888999999999988888882 2234445777789999999998
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhh
Q 008565 412 TMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGV 491 (561)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~ 491 (561)
+++.+...... ....+ ...+.|++++.+++.++||.+.+|+.++++.+.+|++++|.++|++++...+
T Consensus 359 ~~~~~~~~~~~---~~~~~---------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~i 426 (489)
T PRK10207 359 GFLTAAAAGMW---FADAQ---------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAA 426 (489)
T ss_pred HHHHHHHHHHh---hcCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 88766543210 00000 1356788899999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 492 GSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRF 546 (561)
Q Consensus 492 g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 546 (561)
|+.+|..+...... ......+.. .+..+..+|...++.+++..++++++.+..
T Consensus 427 g~~lg~~l~~~~~~-~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~ 479 (489)
T PRK10207 427 AFLLGGYVATFTAV-PDNITDPLE-TLPVYTNVFGKIGLVTLGVAVVMALMVPWL 479 (489)
T ss_pred HHHHHHHHHHHhcc-ccccccchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998875531 000010100 012244567777777777777776665544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=302.40 Aligned_cols=443 Identities=18% Similarity=0.238 Sum_probs=321.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHH
Q 008565 31 KGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNV--LNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLS 108 (561)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~ 108 (561)
.++||.++.+++.++++++++|++.+++|.|++++ +|++..+++++.+.+.++..++++++|+++||++|||++++++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 46788899999999999999999999999999887 9999999999999999999999999999999933999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHH
Q 008565 109 SFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGAS 188 (561)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 188 (561)
.++.+++.+++.+. ++...+++++.+.|+|.|...|+..++++|++|++++++ |++++++++++.++|..
T Consensus 86 ~~~~~~g~~~~~~~-------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~---r~~~~~~~~~~~niG~~ 155 (475)
T TIGR00924 86 GIVLMLGHFMLAMS-------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR---RDGGFTLFYMSINIGSF 155 (475)
T ss_pred HHHHHHHHHHHHhc-------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc---ccceehhHHHHHHHHHH
Confidence 99999999888877 467778889999999999999999999999998765322 88899999999999999
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhH-----HHH------HHHHHHhhcccccC
Q 008565 189 AAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTT-----VAQ------VFVATARKWRVSET 257 (561)
Q Consensus 189 igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~ 257 (561)
+||.+++++.+..||++.|++.++..+++++.+...++..++.++++++.++ ..+ .+.......+.. .
T Consensus 156 ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 234 (475)
T TIGR00924 156 ISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLM-H 234 (475)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-h
Confidence 9999999999989999999998877666665555545444332222211110 000 000001110000 0
Q ss_pred CCCCCccccCCCCCCCcccccccccccccccccch-hhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHH
Q 008565 258 HGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQL-RFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWL 336 (561)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (561)
... ..+.. .....+....... ...++. ....++++....+.+++
T Consensus 235 ~~~---------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~l~l~~ 279 (475)
T TIGR00924 235 HVV---------------------------IANILLMTVTLAVIIFFFR---LAFKPR-----LDAVARNKMYAYIVLFL 279 (475)
T ss_pred ccH---------------------------HHHHHHHHHHHHHHHHHHH---HHHhcc-----CCHHHHhHHHHHHHHHH
Confidence 000 00000 0000000000000 000010 11123344455677888
Q ss_pred HHHHHHHHHhhccchheeec-ccccccCCCceeeccccccchhhHHHHHHHHHhh-------cCCCCCCchhHHHHHHHH
Q 008565 337 SCLMFSCILVQLHTFFTKQG-STMRRSIGSNFQVPPASLQSLVGLSILVAVPVIT-------GHRSGITMLQRIGIGLFT 408 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~g~~~ 408 (561)
...++|+.+.|..+.+..+. ..++..++ ++.+|++.++++|++.+++..|++. |+.++++...++.+|+++
T Consensus 280 ~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l 358 (475)
T TIGR00924 280 EAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLF 358 (475)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 89999999999887655433 34566665 7889999999999999999999833 222345666788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 008565 409 SILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISI 488 (561)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~ 488 (561)
.++++..+++... ... ...+.+.|++++.+++.++||.+..|..++++.+.+|+++||+++|++.+.
T Consensus 359 ~~~~~~~~~~~~~----~~~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~ 425 (475)
T TIGR00924 359 CGASFLTFAASIW----FAD---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLA 425 (475)
T ss_pred HHHHHHHHHHHHh----hcC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999988776421 000 012468899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 489 IGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 489 ~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
..+|+.+++.+.....+. .+...+|...++++++..++.++..+.
T Consensus 426 ~~~g~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 426 QAMGSLLGGYLATFGAVP------------QGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHHHHHHHHHHHHHhcc------------cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876441 122345666666666666666665544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=294.69 Aligned_cols=421 Identities=16% Similarity=0.235 Sum_probs=302.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
+|||.++.++..++++++++|++..++|.|+++++|++..+++.+.+.+.....++++++|+++||++||||+++++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999966999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.+++.+++.... .+...++++..+..+|.|...++..++++|++|++++. |.+++++.++..++|+.++|
T Consensus 86 ~~lg~lll~~~~------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap 155 (493)
T PRK15462 86 MAIGHVVLGASE------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAP 155 (493)
T ss_pred HHHHHHHHHHhh------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHH
Confidence 998877665431 12233445555667788888888899999999986322 88999999999999999999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCC-CCCchh--HHHHHHHHHHhhcccccCCCCCCccccCC
Q 008565 192 LVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAP-VGSPFT--TVAQVFVATARKWRVSETHGGGRGIYHGH 268 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (561)
.+.+++.+..||++.|.+.++..+++++.++..+++..+..+ ++++.+ ............-....+. +..
T Consensus 156 ~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--- 228 (493)
T PRK15462 156 IACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPA----LIT--- 228 (493)
T ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH----HHH---
Confidence 999999999999999999887777776666555544333211 111111 1000000000000000000 000
Q ss_pred CCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 269 ELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQL 348 (561)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (561)
.... .+ +.+........... ... .+-.....+.++|+++...+.+.+..++||+.+.|.
T Consensus 229 ---------------~~~~-~~---~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~ 287 (493)
T PRK15462 229 ---------------VLFW-KE---WSVYALIVATIIGL-GVL-AKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQG 287 (493)
T ss_pred ---------------HHHH-HH---HHHHHHHHHHHHHH-HHH-HHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 00 00000000000000 000 000000122357888888999999999999999999
Q ss_pred cchheeec-ccccccCCCceeeccccccchhhHHHHHHHHH----hhc---CCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008565 349 HTFFTKQG-STMRRSIGSNFQVPPASLQSLVGLSILVAVPV----ITG---HRSGITMLQRIGIGLFTSILTMIVAALVE 420 (561)
Q Consensus 349 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~i~~g~~~~~~~~~~~~~~~ 420 (561)
++.+..+. .+.|.++. ++.+|++++|++|++.+++..|+ +.+ +.+.++...++.+|+++.+++++++.+..
T Consensus 288 ~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~ 366 (493)
T PRK15462 288 GSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSA 366 (493)
T ss_pred hHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 97766555 45777777 89999999999999999999998 233 23457888899999999999999887754
Q ss_pred HHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh-hhhhhhhhHH
Q 008565 421 AKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISII-GVGSFINTGV 499 (561)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~-~~g~~lg~~v 499 (561)
.. .+.+| ..+.+|++..+++.++||.+.+|...+++.+.+|++.+|+.+|++.+.. .+|+.+++.+
T Consensus 367 ~~----~~~~~---------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~ 433 (493)
T PRK15462 367 RW----SAMYG---------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVI 433 (493)
T ss_pred hh----cCCCC---------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11111 2677889999999999999999999999999999999999999998754 7888888887
Q ss_pred Hhhhc
Q 008565 500 IEVVE 504 (561)
Q Consensus 500 ~~~i~ 504 (561)
.....
T Consensus 434 ~~~~~ 438 (493)
T PRK15462 434 ADQTS 438 (493)
T ss_pred HHHhc
Confidence 77664
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=295.60 Aligned_cols=451 Identities=17% Similarity=0.264 Sum_probs=318.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHH
Q 008565 31 KGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSF 110 (561)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~ 110 (561)
.+++|.++.++..++++++++|++..+++.|+++++|++.++++++.+.+........+++|+++||++|||++++++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 36778899999999999999999999999999999999999999988888777777778999999993399999999999
Q ss_pred HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHH
Q 008565 111 IYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAA 190 (561)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig 190 (561)
+.+++.+++.++. ++...++++++++++|.|...+...++++|++|+++.+ |.+++++++++.++|..+|
T Consensus 97 ~~~ig~~l~~~~~------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~g 166 (500)
T PRK09584 97 VLAIGYALVAWSG------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFS 166 (500)
T ss_pred HHHHHHHHHHHhc------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHH
Confidence 9999988887762 24556778889999999998999999999999876422 5568899999999999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchhHH------HHHHHHHHhhccc-ccCCCCC
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQ--APVGSPFTTV------AQVFVATARKWRV-SETHGGG 261 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~ 261 (561)
|.+++++.++.||++.|++.++..+++++.++..++..+++ +|++++.+.. ............. ..++..
T Consensus 167 p~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 245 (500)
T PRK09584 167 MLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIA- 245 (500)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHH-
Confidence 99999999999999999998876666665554444333332 2222222211 0111111111100 000000
Q ss_pred CccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHH
Q 008565 262 RGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMF 341 (561)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (561)
+ ............. .++...+.+..++++.+..+.+++..++|
T Consensus 246 ----------------------~-----~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~f 288 (500)
T PRK09584 246 ----------------------R-----MALGVVALGIVVI----------FGKEAFAMKGAARRKMIVAFILMLEAIIF 288 (500)
T ss_pred ----------------------H-----HHHHHHHHHHHHH----------HHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000000 00000001223455555566677888999
Q ss_pred HHHHhhccchheeeccc-ccccCCCceeeccccccchhhHHHHHHHHHh----hcCCCCCCchhHHHHHHHHHHHHHHHH
Q 008565 342 SCILVQLHTFFTKQGST-MRRSIGSNFQVPPASLQSLVGLSILVAVPVI----TGHRSGITMLQRIGIGLFTSILTMIVA 416 (561)
Q Consensus 342 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~g~~~~~~~~~~~ 416 (561)
|+.+.|.++.+..+..+ .+..+. ++.++++.++.+|++.+++..|++ .|..+|....+++.+|+++.+++++.+
T Consensus 289 ~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l 367 (500)
T PRK09584 289 FVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVL 367 (500)
T ss_pred HHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999887775533 444444 788899999999999999999985 666777788899999999999999887
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhh
Q 008565 417 ALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFIN 496 (561)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg 496 (561)
..... ..+++ ...+.+++++.+++.++||.+.+|...+++.+.+|+++||+++|++.+...+|+.++
T Consensus 368 ~~~~~----~~~~~---------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~ 434 (500)
T PRK09584 368 PLGAK----FANDA---------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA 434 (500)
T ss_pred HHHHH----hcCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 77531 11111 235677899999999999999999999999999999999999999999999999998
Q ss_pred hHHHhhhcccccCCcccCC-CccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 497 TGVIEVVEAITHRSWLVDN-LNRAHLDYFYWVLAGLSALNLCVFIWIAKRF 546 (561)
Q Consensus 497 ~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 546 (561)
+.+....... .-..+. ...+.+...|..+++++++..++.+...+..
T Consensus 435 g~~~~~~~~~---~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 482 (500)
T PRK09584 435 GYVANLMAVP---DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKL 482 (500)
T ss_pred HHHHHHhccc---cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887644210 000000 0012245567666766666665555555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=230.24 Aligned_cols=372 Identities=14% Similarity=0.099 Sum_probs=248.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.+..+....+...++.....+.+|.|+++++|.|..+.+++.+++.++..+++++.|+++||+ ||||++..+.+++++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCAL 93 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHH
Confidence 5666777888888888888999999999999999999999999999999999999999999997 999999999988887
Q ss_pred HHHHHHHhhhccc-ccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIP-LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+.+.+.+...... ...+...+++.|+++|++.+...+...+++.|.+|+++ |++++++.+.+.++|..+||.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l 167 (399)
T PRK05122 94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPL 167 (399)
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHH
Confidence 7665544311000 00145578899999999999988998999999999988 9999999999999999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
++++.+..||+..+++..+..++... ...+ .+++++++++
T Consensus 168 ~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~------------------------------------ 207 (399)
T PRK05122 168 GVLLYHWGGLAGLGLLIMLLALLGLL---LARP-RPAVPPVKGE------------------------------------ 207 (399)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHH---HHhc-CCCCCCCCcc------------------------------------
Confidence 99999999999888766554433322 1111 1111000000
Q ss_pred cccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHhhccchh
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRL-IPIWLSCLMFSCILVQLHTFF 352 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 352 (561)
..+++ +..+..... ....+....+.......+.++
T Consensus 208 -------------------------------------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (399)
T PRK05122 208 -------------------------------------RLPFR-------RVLGRVWPYGMGLALASIGFGTIATFITLYY 243 (399)
T ss_pred -------------------------------------chhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000111100 011111122222211111111
Q ss_pred eeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008565 353 TKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGL 432 (561)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (561)
..+ . .. ..........++.++..++..+..+|.++++.+..+..+..+++..+...
T Consensus 244 ~~~------~----~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------- 299 (399)
T PRK05122 244 AAR------G----WD-GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------------- 299 (399)
T ss_pred HHc------c----cc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 111 1 00 01111222333334444444444444555566666777777766555442
Q ss_pred CCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcc
Q 008565 433 IDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWL 512 (561)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~ 512 (561)
.+.+......++.|++.+...|.......+..|++.||+++|+++....+|..+++.+.+.+.+.
T Consensus 300 ---------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------ 364 (399)
T PRK05122 300 ---------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW------ 364 (399)
T ss_pred ---------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 13344556677889998888888888888999999999999999999999999999999988762
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008565 513 VDNLNRAHLDYFYWVLAGLSALNLCVFIWI 542 (561)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 542 (561)
.+++..+++.+++.+++++..+..
T Consensus 365 ------~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 365 ------FGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred ------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 134556777777777766555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=218.03 Aligned_cols=374 Identities=15% Similarity=0.152 Sum_probs=274.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
.+..++.+.+..|+....=+.....+|. +.+++|.|..++|++++.|.++..++.|+...++||+ .||++++..+.++
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lF 88 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALF 88 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 4456777888888888888888888876 4578999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
+++.+++.++ +|+..++++|++.|+..|.+++...++.+++.|+++ |+++.++...+..++..+|.+
T Consensus 89 i~~n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvP 155 (394)
T COG2814 89 IVSNLLSALA-------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVP 155 (394)
T ss_pred HHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhcc
Confidence 9999999999 799999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCC--CchhHHHHHHHHHHhhcccccCCCCCCccccCCCC
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVG--SPFTTVAQVFVATARKWRVSETHGGGRGIYHGHEL 270 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (561)
++.++.+.+|||..|+..++..+++++..+...| +++.++. .+..+..
T Consensus 156 LGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~---------------------------- 205 (394)
T COG2814 156 LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLL---------------------------- 205 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHH----------------------------
Confidence 9999999999999999999888888887777665 1111100 0000000
Q ss_pred CCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008565 271 DDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHT 350 (561)
Q Consensus 271 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (561)
+-.++.+.........+.....+..|++..+
T Consensus 206 -------------------------------------------------~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P 236 (394)
T COG2814 206 -------------------------------------------------RLLRRPGVLLGLLATFLFMTGHFALYTYIRP 236 (394)
T ss_pred -------------------------------------------------HHhcCchHHHHHHHHHHHHcchhhhHHhHHH
Confidence 0000112222222333344444555555555
Q ss_pred hheeecccccccCCCceee-ccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008565 351 FFTKQGSTMRRSIGSNFQV-PPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARE 429 (561)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~ 429 (561)
++.+... ++. ...+.....++..++...+-+|..+| ..++.+...+.+..+.++.+.+..
T Consensus 237 ~L~~v~g---------~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--------- 297 (394)
T COG2814 237 FLESVAG---------FSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG--------- 297 (394)
T ss_pred HHHHccC---------CCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc---------
Confidence 5444321 111 12233344455556666667777766 666777777777777777766642
Q ss_pred cCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccC
Q 008565 430 NGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHR 509 (561)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~ 509 (561)
.+.+..+...++.+++.....+.......+.. ++.++.+++++....++|..+|..+.+.+.+.
T Consensus 298 ------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~--- 361 (394)
T COG2814 298 ------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA--- 361 (394)
T ss_pred ------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 23344455555555555544455555555533 46799999999999999999999999999882
Q ss_pred CcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008565 510 SWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAK 544 (561)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 544 (561)
.++....|+.+.+.+++.++.+...+
T Consensus 362 ---------~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 362 ---------LGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred ---------hchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778878777777777665544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=231.44 Aligned_cols=346 Identities=13% Similarity=0.127 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMV 117 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~ 117 (561)
++++..+++...+.+.+.++++.|+++++|+|..+.|++.+...+...+..+++|+++||+ |||+++..+.++.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5566788899999999999999999999999999999999999999999999999999997 999999999999999998
Q ss_pred HHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008565 118 LLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l 197 (561)
.+.+. ++.+.+++.|++.|++.+...|...+++.|.+|+++ |++++++.+...++|..+||.+++++
T Consensus 92 ~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l 158 (400)
T PRK11646 92 TMAIA-------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWL 158 (400)
T ss_pred HHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877 678888999999999988888888999999999988 99999999999999999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccc
Q 008565 198 QDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRT 277 (561)
Q Consensus 198 ~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (561)
. .+||++.|++.++..++..+...+..++.+++ +..++.
T Consensus 159 ~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~--------------------------------------- 197 (400)
T PRK11646 159 L-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTPV--------------------------------------- 197 (400)
T ss_pred H-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchhh---------------------------------------
Confidence 8 67999999988766655544433333221100 000000
Q ss_pred cccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecc
Q 008565 278 DIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGS 357 (561)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (561)
.+ .++ ...++++.. ... .....++....+....+..+
T Consensus 198 -----------------~~----------------~~~----~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~p~~-- 234 (400)
T PRK11646 198 -----------------RE----------------GMT----RVLRDKRFV-TYV---LTLTGYYMLAVQVMLMLPIM-- 234 (400)
T ss_pred -----------------HH----------------HHH----HHHcCchHH-HHH---HHHHHHHHHHHHHHHhhhhh--
Confidence 00 000 000111111 111 11111111111111111111
Q ss_pred cccccCCCceeeccccccchhhHHHHHHHHHhhcC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 008565 358 TMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGH-RSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSP 436 (561)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (561)
..+. + ......+.......+...+......+. .+|....+.+..+.++..+++..+...+
T Consensus 235 -~~~~-~-~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------------- 295 (400)
T PRK11646 235 -VNDI-A-GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------------- 295 (400)
T ss_pred -HHhh-c-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------------
Confidence 1111 0 101112222233333333222223333 2223334456667777777666555432
Q ss_pred CCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhccc
Q 008565 437 KAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAI 506 (561)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~ 506 (561)
+.+.+....++.+++.+...|...+++.+.+|++.||+++|++++...+|..+|+.+.+.+.+.
T Consensus 296 ------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 296 ------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 2334444556778888888899999999999999999999999999999999999999999874
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=234.51 Aligned_cols=355 Identities=11% Similarity=0.095 Sum_probs=241.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
+.+|+.+.+.+..++..++.+...++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ |||++++++.+.
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3456788888899999999999999999999999999999999999999999999999999999997 999999999988
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
..++.+++.+. ++.+.+++.+.+.+.+.+...+...+...|.+|+++ |++++++.+...++|..+||
T Consensus 83 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp 149 (395)
T PRK10054 83 FASGFIAIPLV-------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGP 149 (395)
T ss_pred HHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHH
Confidence 88888887777 567777778888887777777888899999999888 99999999999999999999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCC
Q 008565 192 LVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELD 271 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (561)
.+++++.+ .||+..|++.++..++..+......++.+++++++ + .. .
T Consensus 150 ~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~-~~----------------------------~-- 196 (395)
T PRK10054 150 PLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-T-GS----------------------------V-- 196 (395)
T ss_pred HHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-h-hh----------------------------h--
Confidence 99999875 68999999888776666554443332211110000 0 00 0
Q ss_pred CCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008565 272 DDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTF 351 (561)
Q Consensus 272 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (561)
.+.. +..++++.........+....+.........+
T Consensus 197 -----------------------~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 232 (395)
T PRK10054 197 -----------------------WSPS---------------------VLLQDKALLWFTCSGFLASFVSGAFASCISQY 232 (395)
T ss_pred -----------------------hhhh---------------------hhccCceehHHHHHHHHHHHHHHHhhhhHHHH
Confidence 0000 00001111111111111111111111111111
Q ss_pred heeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008565 352 FTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENG 431 (561)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (561)
.... .+.... ....+.+...+........+...++.+|.++++.+..++.+..+++..+....
T Consensus 233 ~~~~---~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------- 295 (395)
T PRK10054 233 VMVV---ADSDFA---EKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----------- 295 (395)
T ss_pred HHHh---cccchH---HHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-----------
Confidence 1110 011100 00111222223333333334455666666667777778777777766554421
Q ss_pred CCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 432 LIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
.+.+.+.+..++.++|+....|..++.+.+.+|++.|+++.+..+ ...+|..+||.+.+.+.|
T Consensus 296 ----------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 296 ----------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 133344556678899998888999999999999999999988765 667899999999999988
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-25 Score=229.05 Aligned_cols=372 Identities=12% Similarity=0.105 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.++.+.+..++.....+...+.+|. +.+++|.+..+.++..+.+.++..+++++.|+++||+ ||||++..+..+.+++
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIAS 87 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence 3455555555544444444444554 5678999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.+.+.++ ++.+.+++.|+++|++.+...+...+++.|++|+++ |++++++.+.+.++|..++|.+++
T Consensus 88 ~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~ 154 (390)
T PRK03545 88 HVLSALA-------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGR 154 (390)
T ss_pred HHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHH
Confidence 9998888 689999999999999998888999999999999988 999999999999999999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcc
Q 008565 196 YLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDK 275 (561)
Q Consensus 196 ~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (561)
.+.+..|||+.|++.++..++..+..+...|+.++++ +++..+
T Consensus 155 ~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~----------------------------------- 197 (390)
T PRK03545 155 VIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH--SGSLKS----------------------------------- 197 (390)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cchHHH-----------------------------------
Confidence 9999899999999988766655544443322211100 000000
Q ss_pred cccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheee
Q 008565 276 RTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQ 355 (561)
Q Consensus 276 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (561)
.. +..++++...............+........++...
T Consensus 198 ---------------------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (390)
T PRK03545 198 ---------------------LP---------------------LLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV 235 (390)
T ss_pred ---------------------HH---------------------HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 000011111111111111111122222112222111
Q ss_pred cccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008565 356 GSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDS 435 (561)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (561)
...+. ...+.......+..++...+..+..+|..+ +.+..+..+..++........
T Consensus 236 -~g~s~-------~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~-~~~~~~~~~~~~~~~~l~~~~--------------- 291 (390)
T PRK03545 236 -AGLSE-------NFATLLLLLFGGAGIIGSVLFSRLGNRHPS-GFLLIAIALLLVCLLLLLPAA--------------- 291 (390)
T ss_pred -cCCCc-------cHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHHHh---------------
Confidence 01111 111223333344445555555555555443 344555555555443332211
Q ss_pred CCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCC
Q 008565 436 PKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDN 515 (561)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~ 515 (561)
.+.+.++...++.|++.....+.....+.+..| +.|++++|+++....+|..+|+.+.|.+.+.
T Consensus 292 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~--------- 355 (390)
T PRK03545 292 ------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH--------- 355 (390)
T ss_pred ------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 234455566677888887777888888888877 5789999999999999999999999999872
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008565 516 LNRAHLDYFYWVLAGLSALNLCVFIWIAK 544 (561)
Q Consensus 516 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 544 (561)
.++...|++.+.+.+++++.++...+
T Consensus 356 ---~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 356 ---LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ---cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 23456778888888888887766653
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=228.98 Aligned_cols=396 Identities=13% Similarity=0.001 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
...++...++..++.......+|.+.+ +++.++.+.|++.+...++..++.++.|+++||+ |||+++..+..+.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF 96 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence 334445566777777667777887765 5678999999999999999999999999999997 99999988877777666
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
+....... ...++.+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++.++..++|..+||.++++
T Consensus 97 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~ 168 (417)
T PRK10489 97 IGLALNAF--LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGL 168 (417)
T ss_pred HHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 55443210 011456778889999999988878888899999999988 9999999999999999999999999
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccc
Q 008565 197 LQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKR 276 (561)
Q Consensus 197 l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (561)
+.+..||++.|++.++..+++.+..+.. ++. ++++++ .+
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~---~~~~~~--------------------------------~~----- 207 (417)
T PRK10489 169 LIAAGGVAWNYGLAAAGTFITLLPLLRL-PAL---PPPPQP--------------------------------RE----- 207 (417)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCC---CCCCcc--------------------------------cc-----
Confidence 9988899999988776666555444332 211 110000 00
Q ss_pred ccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeec
Q 008565 277 TDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQG 356 (561)
Q Consensus 277 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (561)
+ ...+..+. + +...+.+.........++........... +.+....
T Consensus 208 -------~-----~~~~~~~~----------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 253 (417)
T PRK10489 208 -------H-----PLRSLLAG----------------F-----RFLLASPVVGGIALLGGLLTMASAVRVLY-PALADEV 253 (417)
T ss_pred -------c-----chHHHHHH----------------H-----HHHHcChHHHHHHHHHHHHHHHHhHHHhh-HHHHHhc
Confidence 0 00000000 0 00000011111111111111111111111 1111110
Q ss_pred ccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 008565 357 STMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSP 436 (561)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (561)
.+.+. ...+.......++.++...+..+..++.++.+.+..+.++..++++.+...
T Consensus 254 ~g~~~-------~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~----------------- 309 (417)
T PRK10489 254 WQMGA-------AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM----------------- 309 (417)
T ss_pred cCCCh-------hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----------------
Confidence 01110 112233344445555555554444444444445666666666665554432
Q ss_pred CCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCC
Q 008565 437 KAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNL 516 (561)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~ 516 (561)
.+.+......++.|++.+...+...+++.+..|++.||++.|+++....+|..+|+.+.|.+.+..
T Consensus 310 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~--------- 375 (417)
T PRK10489 310 -----PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM--------- 375 (417)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh---------
Confidence 133445566677788887777888889999999999999999999999999999999999998722
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q 008565 517 NRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVLEDESKE 558 (561)
Q Consensus 517 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (561)
+....++..+++.++..++.+...++.++++++|.|+..
T Consensus 376 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 376 ---TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred ---chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 122355556666666666666666777777777765543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=224.33 Aligned_cols=372 Identities=12% Similarity=0.085 Sum_probs=245.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.++.+.+..++..++.....+.+|.|+++++|.|..+.+++.+.+.++..++++++|+++||+ ||||+++.+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL 93 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence 3455666677777788888889999999999999999999999999999999999999999997 999999998887766
Q ss_pred HHHHHHHhhh-cccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVS-VIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~-~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+.+....... +.....+...+++.|+++|++.+...+...+++.|.+|+++ |++++++.+.+.++|..++|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~ 167 (392)
T PRK12382 94 AGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPL 167 (392)
T ss_pred HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHH
Confidence 5543322210 00011367788999999999999888888889999999988 9999999999999999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
++++.+..||+..+.+..+..++.. ... ++.++.+++++...
T Consensus 168 ~~~l~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~---------------------------------- 209 (392)
T PRK12382 168 GLLLHSHFGFAALALTTMVLPLLAW---AFN-GTVRKVPAHAGERP---------------------------------- 209 (392)
T ss_pred HHHHHhccChHHHHHHHHHHHHHHH---HHH-HhccCCCCCcccCc----------------------------------
Confidence 9999988999987665544332222 111 11111111000000
Q ss_pred cccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHhhccchh
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRL-IPIWLSCLMFSCILVQLHTFF 352 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 352 (561)
+.. +..|..... .........+.......+.++
T Consensus 210 -------------------~~~---------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 243 (392)
T PRK12382 210 -------------------SLW---------------------------SVVGLIWKPGLGLALQGVGFAVIGTFVSLYF 243 (392)
T ss_pred -------------------hHH---------------------------HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Confidence 000 000000000 001111111111111111111
Q ss_pred eeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008565 353 TKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGL 432 (561)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (561)
.. ... . ..........+..++..++..+..+|.++++.+..+..+..+++..+...+
T Consensus 244 ~~------~~~----~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------------ 300 (392)
T PRK12382 244 AS------KGW----A-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP------------ 300 (392)
T ss_pred Hh------cCC----c-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc------------
Confidence 11 011 0 011112223333444555555555555556667777777777766554421
Q ss_pred CCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcc
Q 008565 433 IDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWL 512 (561)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~ 512 (561)
+.+......++.+++.+...|...+...+..|++.||++.|++++...+|..+++.+.+.+.+..
T Consensus 301 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----- 365 (392)
T PRK12382 301 ----------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF----- 365 (392)
T ss_pred ----------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 23444556677888888888888888899999999999999999999999999999999998732
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008565 513 VDNLNRAHLDYFYWVLAGLSALNLCVFIWI 542 (561)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 542 (561)
++...|.+.+++.+++.++.+..
T Consensus 366 -------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 -------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHhh
Confidence 23556777777777777665544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=227.50 Aligned_cols=167 Identities=11% Similarity=0.076 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMV 117 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~ 117 (561)
+..++..++..+..+....++|.+. +++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~ 103 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINI 103 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHH
Confidence 3344555555555556667777665 46999999999999999999999999999999997 999999999999999988
Q ss_pred HHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008565 118 LLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l 197 (561)
++.+. ++.+.+++.|++.|++.|...+...+++.|++|+++ |++++++++.+.++|..++|.+++++
T Consensus 104 ~~~~~-------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 104 LFGFS-------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHHHH-------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887 678888899999999999888999999999999988 99999999999999999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHH
Q 008565 198 QDNVGWAVGFGVMAGALALALA 219 (561)
Q Consensus 198 ~~~~g~~~~f~~~~~~~~i~~~ 219 (561)
.+.+|||+.|++.++..++..+
T Consensus 171 ~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 171 ALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHcccHHHHHHHHHHHHHHHHH
Confidence 9999999999887766544433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=228.51 Aligned_cols=397 Identities=11% Similarity=0.074 Sum_probs=244.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.+..+++..++.....-.+...+|.. .+++|.+..+.+|+.+.+.++..++.+++|+++||+ |||++++++.+++.++
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 44445566666666665566666665 568999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhc-ccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQF-DERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
++++.++ ++.+.++++|+++|+|.+...+.....+.+.+ |+++ |+++++++....++|..+||.++
T Consensus 85 ~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 85 SLAAAFS-------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 78999999999999999988888888887776 5666 99999999999999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHH------HHHHhhcccccCCCCCCccccCC
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVF------VATARKWRVSETHGGGRGIYHGH 268 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 268 (561)
+++.++.|||+.|++.....++.+++.+...|+.++++.++.+........ ....... ..+..
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~----~~~~~------- 220 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTA----LKGFL------- 220 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhc----cccCC-------
Confidence 999999999999999887766666555555444222211111111111000 0000000 00000
Q ss_pred CCCCCcccccccccccccccc--cchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHH
Q 008565 269 ELDDDDKRTDIGQSKRTIART--NQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRL-IPIWLSCLMFSCIL 345 (561)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 345 (561)
+. ... ......+ -...+...+. ..+.|... .+-.++ |..... .........++...
T Consensus 221 ~~-----~~~----~~~~~~~~~~l~~f~~~e~---------~~~~p~~~--~~lf~~-~~~~~~~~~~~~~~~~~~~~~ 279 (495)
T PRK14995 221 SL-----WVT----SLTLLTGALLLGLFIRTQL---------AASRPMID--MRLFTH-RIILSGVVMAMTAMITLVGFE 279 (495)
T ss_pred ch-----HHH----HHHHHHHHHHHHHHHHHHh---------cCCCCCcC--HHHhCC-cccHHHHHHHHHHHHHHHHHH
Confidence 00 000 0000000 0000000000 00111100 000011 111111 11111111111111
Q ss_pred hhccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008565 346 VQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVR 425 (561)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~ 425 (561)
...+.+++. ....+ ....+.......+...+..++..+..+|.++++.+..|+.+..++.+.+....
T Consensus 280 ~~~~~~lq~-v~g~s-------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~----- 346 (495)
T PRK14995 280 LLMAQELQF-VHGLS-------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD----- 346 (495)
T ss_pred HHHHHHHHH-HcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc-----
Confidence 111111111 00001 01122222333444555556655544455555667778877777766554431
Q ss_pred HhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 426 TARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
...+.+......++.|+|.+...++....+.+..|++.++.+++++++.+.+|+.+|+.+.+.+.+
T Consensus 347 --------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 347 --------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred --------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112334455667888999999999999999999999999999999999999999999999998865
Q ss_pred c
Q 008565 506 I 506 (561)
Q Consensus 506 ~ 506 (561)
.
T Consensus 413 ~ 413 (495)
T PRK14995 413 R 413 (495)
T ss_pred H
Confidence 3
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-24 Score=226.55 Aligned_cols=401 Identities=11% Similarity=0.063 Sum_probs=248.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
.+.+|.+....++..+..+.+.+++|.|.+ ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 346777778888888888888899998875 5999999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++.+.+.+. ++.+.+++.|+++|++.+...|...+++.|.+|+++ |+++++..+...++|..+||.+
T Consensus 87 ~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~ 153 (471)
T PRK10504 87 LGSLFCALS-------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPAL 153 (471)
T ss_pred HHHHHHHHh-------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHH
Confidence 888877776 578889999999999999999999999999999888 9999999999999999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
++++.+..||++.|++..+...+..+......++.+.++.+ .+................. ..+...
T Consensus 154 ~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~-~~~~~~------------ 219 (471)
T PRK10504 154 GGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRR-FDLSGFLLLAVGMATLTLA-LDGSKG------------ 219 (471)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CChHHHHHHHHHHHHHHHH-HhcCCc------------
Confidence 99999999999999988776666655554444432222111 1111110000000000000 000000
Q ss_pred cccccccccccccccccchhhhhhh------hhhcccccccccCCCCcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHh
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKA------MIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIP-IWLSCLMFSCILV 346 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 346 (561)
............-.. ....+.. ...+. ...+..++ +.....+. .++....+ ....
T Consensus 220 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~l~~~-~~~~~~l~~~~~~~~~~-~~~~ 281 (471)
T PRK10504 220 ----------LGLSPLAIAGLVAVGVVALLLYLLHARN----NNRAL--FSLKLFRT-RTFSLGLAGSFAGRIGS-GMLP 281 (471)
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHHHHHhc----CCCCc--cCHHHhcc-cchHHHHHHHHHHHHHH-HHHH
Confidence 000000000000000 0000000 00000 00000011 11111111 11111111 1111
Q ss_pred hccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008565 347 QLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRT 426 (561)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~ 426 (561)
...+++..+....+. ...+.......+..++..++..+..+|.++++.+..+..+..++...+.+..
T Consensus 282 ~~~~~~~~~~~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------ 348 (471)
T PRK10504 282 FMTPVFLQIGLGFSP-------FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA------ 348 (471)
T ss_pred HHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc------
Confidence 111222211111111 1111222223333444445555555566666777777777766655544421
Q ss_pred hhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhccc
Q 008565 427 ARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAI 506 (561)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~ 506 (561)
...+.+......++.|++.+...+..+.+..+..|++.+|.++|++++.+.+|..+|+.+.+.+.+.
T Consensus 349 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 349 -------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred -------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112233344566778888888999999999999999999999999999999999999999988774
Q ss_pred c
Q 008565 507 T 507 (561)
Q Consensus 507 ~ 507 (561)
.
T Consensus 416 ~ 416 (471)
T PRK10504 416 F 416 (471)
T ss_pred h
Confidence 3
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-24 Score=221.73 Aligned_cols=383 Identities=13% Similarity=0.102 Sum_probs=242.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
++......+...++..+..+......|.. .+++|.++.+.+++.+...++..++.++.|+++||+ |||+++..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 90 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAPRM-AQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALF 90 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 33445555566666666666666666554 567999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++.+++.+. .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+....+|..+++.
T Consensus 91 ~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~ 157 (406)
T PRK11551 91 GLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASV 157 (406)
T ss_pred HHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777 688899999999999999888999999999999988 999999999999999999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCC
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDD 272 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (561)
+++.+.+..+|+..|++.++..++..+......++.++..+++. +.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------------------~~~- 204 (406)
T PRK11551 158 IGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG--------------------------------AGK- 204 (406)
T ss_pred HHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC--------------------------------cch-
Confidence 99999888999999988776555544444333332111000000 000
Q ss_pred CcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 008565 273 DDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFF 352 (561)
Q Consensus 273 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (561)
+.....+. .+ +....++..............++......+.++
T Consensus 205 -----------------~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 247 (406)
T PRK11551 205 -----------------QRAPVLRA---------------LF-----GEGRATATLLLWISYFFTLIVLYFLLNWLPSLL 247 (406)
T ss_pred -----------------hhhhhHHH---------------Hh-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00 000011111111111111122222222222222
Q ss_pred eeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008565 353 TKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGL 432 (561)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (561)
.. ...+. ...+.......++.++...+..+..+|.++++.+..+.+...++++.+...
T Consensus 248 ~~--~g~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------- 305 (406)
T PRK11551 248 VG--QGLSR-------SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA------------- 305 (406)
T ss_pred Hh--CCCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 11 11111 111222333333444444443333333444455555544444444433331
Q ss_pred CCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcc
Q 008565 433 IDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWL 512 (561)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~ 512 (561)
.+.+.+....++.+++.....+...++..|..|++.||++.|+.+....+|..+++.+.+.+.+..
T Consensus 306 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~----- 371 (406)
T PRK11551 306 ---------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG----- 371 (406)
T ss_pred ---------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-----
Confidence 123334455566777777777888899999999999999999999999999999999999987622
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008565 513 VDNLNRAHLDYFYWVLAGLSALNLCVFIWI 542 (561)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 542 (561)
+.....++..+...+++.+..+..
T Consensus 372 ------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 372 ------RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 222345555555555555554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-24 Score=222.02 Aligned_cols=382 Identities=18% Similarity=0.112 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh-----hhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT-----AAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSS 109 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-----~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~ 109 (561)
|....+....++..+++....+++|.|++ ++|.+..+ .+++.++..+...++.++.|+++||+ |||+.+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 34555666778888888888899999986 48888655 48889999999999999999999997 9999999998
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 110 FIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
.+..++.+++.+. ++.+.+++.|++.|++.+ ..+...+++.|.+|+++ |+++.++.+....+|..+
T Consensus 92 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~ 157 (408)
T PRK09874 92 LGMGIVMVLMGLA-------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALL 157 (408)
T ss_pred HHHHHHHHHHHHH-------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHH
Confidence 8888888777776 578889999999999865 45777888999999888 999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCC
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHE 269 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (561)
+|.+++.+.+..+|+..|++.++..++..+..+...++.....+++ +..+
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------------------------- 207 (408)
T PRK09874 158 GPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-EMLH----------------------------- 207 (408)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-hhhH-----------------------------
Confidence 9999999998899999998888776666555444433211100000 0000
Q ss_pred CCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008565 270 LDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLH 349 (561)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (561)
..+... .+ ++++........ ...+........
T Consensus 208 ------------------------~~~~~~-------------~~--------~~~~~~~~~~~~---~~~~~~~~~~~~ 239 (408)
T PRK09874 208 ------------------------MREVVT-------------SL--------KNPKLVLSLFVT---TLIIQVATGSIA 239 (408)
T ss_pred ------------------------HHHHHH-------------hC--------cCCchHHHHHHH---HHHHHHHHHHHH
Confidence 000000 00 001111111110 011111111111
Q ss_pred chheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008565 350 TFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARE 429 (561)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~ 429 (561)
+.+..+......... ......+.......+..++..+...+..+|.++++.+..+..+..++++.....
T Consensus 240 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------- 308 (408)
T PRK09874 240 PILTLYVRELAGNVS-NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV---------- 308 (408)
T ss_pred HHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh----------
Confidence 111111000000000 000011122233344555556665565666666666667766666555444332
Q ss_pred cCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccC
Q 008565 430 NGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHR 509 (561)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~ 509 (561)
.+.+.+....++.|++.+...|...+...+..|++.+|+..++++....+|..+|+.+.+.+.+.
T Consensus 309 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~--- 373 (408)
T PRK09874 309 ------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN--- 373 (408)
T ss_pred ------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---
Confidence 13344555667789999998999999999999999999999999999999999999999998762
Q ss_pred CcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 510 SWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
.++...|++.+++.+++.+..+...++
T Consensus 374 ---------~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 374 ---------YGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred ---------cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234567788888888877766555433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=217.43 Aligned_cols=358 Identities=11% Similarity=0.024 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008565 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLL 119 (561)
Q Consensus 40 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~ 119 (561)
++...++..++.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ ||||+++.+..+..++..+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 455667777777777788888876 4799999999999999999999999999999997 99999999988888877777
Q ss_pred HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 120 SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~ 199 (561)
.+... ....+.+.+++.|++.|++.+...+...++++|++|+++ |++.+++.+....+|..++|.+++++.+
T Consensus 82 ~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 82 PFVAL--LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred HHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66611 000178889999999999999999999999999999988 9999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccc
Q 008565 200 NVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDI 279 (561)
Q Consensus 200 ~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (561)
..||++.|++.++..+++.+..+..+.+.+++++ +++.++ +
T Consensus 154 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------------------------------~- 194 (365)
T TIGR00900 154 TLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQALSN-------------------------------------A- 194 (365)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-ccccch-------------------------------------h-
Confidence 8999999988877666555444433221110000 000000 0
Q ss_pred cccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHH-HHHHHHHHHHHHHhhccchheeeccc
Q 008565 280 GQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLI-PIWLSCLMFSCILVQLHTFFTKQGST 358 (561)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (561)
...+..+. ++ ...++ +...... ...+....+........+.+......
T Consensus 195 ----------~~~~~~~~----------------~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (365)
T TIGR00900 195 ----------VLRDTREG----------------IK----FVLKN-PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLG 243 (365)
T ss_pred ----------HHHHHHhH----------------HH----HHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence 00000000 00 00001 1111111 11111111111111111222211001
Q ss_pred ccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 008565 359 MRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKA 438 (561)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (561)
.+. ...+.......++.++..++..+..++.++++.+..+..+..++++...+..
T Consensus 244 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 298 (365)
T TIGR00900 244 RGS-------THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP------------------ 298 (365)
T ss_pred Cch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc------------------
Confidence 110 1122333334444455555544444445555556666666666655554421
Q ss_pred cccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 439 IVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 439 ~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
+ +.+...+..++.|++.+...+...++..|..|++.||++.|++++...++..+++.+.+.+.|
T Consensus 299 --~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 299 --P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred --h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 245566677888999999999999999999999999999999999999999999999998876
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=214.34 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=150.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
+.|+.+..+....++.....|...+.+|.+ .+++|.++.+.++..+...++..++.++.|+++||+ |||+++..+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~ 94 (394)
T PRK10213 17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVL 94 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHH
Confidence 356666666666666666666666777765 467999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.+++.+++.+. ++.+.+++.|++.|++.+...+...+++.|++|+++ |+++.++...+.++|..++|
T Consensus 95 ~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~ 161 (394)
T PRK10213 95 LTLSCLLVSFA-------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAA 161 (394)
T ss_pred HHHHHHHHHHH-------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHH
Confidence 99998888877 689999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHH
Q 008565 192 LVAIYLQDNVGWAVGFGVMAGALALALA 219 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~ 219 (561)
.+++++.+.+||++.|++.++..++..+
T Consensus 162 ~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 162 PLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888765554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=214.86 Aligned_cols=359 Identities=11% Similarity=0.040 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008565 47 QRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVI 126 (561)
Q Consensus 47 ~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~ 126 (561)
++.+.+...+.+|. +++++|+|.++.|++.+.+.+++.+++++.|+++||+ |||+++..++.....+.+.....
T Consensus 3 ~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~---- 76 (368)
T TIGR00903 3 SQAIWVTFSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP---- 76 (368)
T ss_pred hhHHHHHHHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh----
Confidence 34444455555655 4668999999999999999999999999999999997 99988765554444443322322
Q ss_pred cccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Q 008565 127 PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVG 206 (561)
Q Consensus 127 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~ 206 (561)
.+...+++.|++.|++.+. .+.....++|++|+++ |++++++.+.+..+|..+++.+++++.+.+|||+.
T Consensus 77 ---~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~ 146 (368)
T TIGR00903 77 ---FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLL 146 (368)
T ss_pred ---ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 4788999999999999986 4555666799999988 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccccccccccccc
Q 008565 207 FGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTI 286 (561)
Q Consensus 207 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 286 (561)
|++.++..++..+..+...|+.++++++..+..
T Consensus 147 f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~----------------------------------------------- 179 (368)
T TIGR00903 147 IIPIAAVAAAGIILVLAALPALPFQAAEGFGFK----------------------------------------------- 179 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchH-----------------------------------------------
Confidence 988777665555544444333111110000000
Q ss_pred ccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCc
Q 008565 287 ARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSN 366 (561)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (561)
+..+ +++ +-.+++...............++......++++... +
T Consensus 180 ------~~~~----------------~~~----~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~----------g 223 (368)
T TIGR00903 180 ------DAVK----------------EFG----ALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPA----------G 223 (368)
T ss_pred ------HHHH----------------HHH----HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------C
Confidence 0000 000 000111122222222333344444444444444221 1
Q ss_pred eeeccccccchhhHHHHHHHHHhhcCCCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhh
Q 008565 367 FQVPPASLQSLVGLSILVAVPVITGHRSGITMLQR-IGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIW 445 (561)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (561)
++...+....+..+...+......++.+|.+.++. +....++..+.+...... .+.+
T Consensus 224 ~s~~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~----------------------~~~~ 281 (368)
T TIGR00903 224 LEDIAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE----------------------LNRL 281 (368)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc----------------------cccH
Confidence 11111222333333333444444444333222222 222233333333222221 1122
Q ss_pred hHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHH
Q 008565 446 WLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFY 525 (561)
Q Consensus 446 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 525 (561)
..+....+.+++....++..+++..|..|++.||+++|+.+...++++.+++.+.+.+.. +....|
T Consensus 282 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--------------~~~~~f 347 (368)
T TIGR00903 282 ALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--------------SAEAYF 347 (368)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--------------CHHHHH
Confidence 333344555666666667788999999999999999999999999999999999887753 123467
Q ss_pred HHHHHHHHHHHHHHH
Q 008565 526 WVLAGLSALNLCVFI 540 (561)
Q Consensus 526 ~~~~~i~~~~~~~~~ 540 (561)
.++++..+++.+..+
T Consensus 348 ~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 348 TFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-23 Score=227.44 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHH
Q 008565 55 AGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAV 134 (561)
Q Consensus 55 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (561)
...+..++.+++|++..+.+++.+++.++.+++.+++|+++||+ |||+.+++++++.+++.+++.++ ++.+.
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa-------~s~~~ 257 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV-------QGYGF 257 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH-------hhHHH
Confidence 34444566778999999999999999999999999999999997 99999999999999988888887 68889
Q ss_pred HHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc-------------c
Q 008565 135 FFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN-------------V 201 (561)
Q Consensus 135 l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~-------------~ 201 (561)
++++|++.|++.|+..+...+++.|.+|++. |++.+++.++...+|.++++.++..+... .
T Consensus 258 llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~ 331 (742)
T TIGR01299 258 FLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFH 331 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccc
Confidence 9999999999999999999999999999998 99999999999999999999887665432 3
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 008565 202 GWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 202 g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
+||+.|++.++..+++++..++
T Consensus 332 gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 332 SWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888777665555544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=216.00 Aligned_cols=361 Identities=12% Similarity=0.043 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008565 51 YYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHY 130 (561)
Q Consensus 51 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (561)
++.+.+.+|. +++++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..++.+++++.+++.++ +
T Consensus 25 ~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a-------~ 95 (393)
T PRK09705 25 LTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY-------P 95 (393)
T ss_pred hhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC-------c
Confidence 3555566665 5678999999999999999999999999999999997 99999999999999999999998 6
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Q 008565 131 RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV-GWAVGFGV 209 (561)
Q Consensus 131 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~-g~~~~f~~ 209 (561)
++..+++.|+++|++.+...+....++.|++| ++ |+++++.+..+.++|..+++.+++++.++. +|+..+.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88899999999999999988888899999987 66 999999999999999999999999988775 79988866
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccc
Q 008565 210 MAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIART 289 (561)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 289 (561)
.++..++.....+...++ +|++++ +.+ .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~----~~~~~~-------------------------------~~~-----~~----------- 197 (393)
T PRK09705 169 WALPAVVALFAWWWQSAR----EVASSH-------------------------------KTT-----TT----------- 197 (393)
T ss_pred HHHHHHHHHHHHHHHhcC----CCcccc-------------------------------CCC-----cC-----------
Confidence 555444333322222111 111000 000 00
Q ss_pred cchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceee
Q 008565 290 NQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQV 369 (561)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (561)
....+ .+++..............++......+.++..+ ..+. .
T Consensus 198 --------------------~~~~l--------~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~--g~s~-------~ 240 (393)
T PRK09705 198 --------------------PVRVV--------FTPRAWTLGVYFGLINGGYASLIAWLPAFYIEI--GASA-------Q 240 (393)
T ss_pred --------------------Ccccc--------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCh-------h
Confidence 00000 011111111111122222223333333333221 1111 1
Q ss_pred ccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHh
Q 008565 370 PPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLP 449 (561)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (561)
..+.......+..++..++..+..+|.++++.+..++.+..++...+.... .+...+
T Consensus 241 ~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~---------------------~~~~~~-- 297 (393)
T PRK09705 241 YSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP---------------------LQLPVL-- 297 (393)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc---------------------chHHHH--
Confidence 122333344455555555555555556666666677777666665444321 111111
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhhc-chhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHH
Q 008565 450 QYLLVSICDVFGIVGLQELFYDQM-PEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVL 528 (561)
Q Consensus 450 ~~~l~g~g~~~~~~~~~~~~~~~~-p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (561)
..++.+++.+...|.......+.. |++.+|+..|+.+....++..++|.+.+++.+.+ +.+...+.+.
T Consensus 298 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-----------g~~~~~~~~~ 366 (393)
T PRK09705 298 WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-----------GNYLMDWAFH 366 (393)
T ss_pred HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCchHHHHHH
Confidence 234557777777787777777777 4688999999999999999999999999998843 2234456666
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 008565 529 AGLSALNLCVFIWIAKRFVYK 549 (561)
Q Consensus 529 ~~i~~~~~~~~~~~~~~~~~~ 549 (561)
+.++++..+..+...+|++.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 367 ALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHHHHHHHHhccccccc
Confidence 666666666666655554433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-23 Score=214.29 Aligned_cols=180 Identities=8% Similarity=0.047 Sum_probs=150.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+++..+.+++..+++......+.... ..+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++..++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 34445555555555555555554444 478899999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++.+++.++ ++...+++.|++.|++.+...|....++.|++|+++ |++++++++.+..+|..+++.
T Consensus 84 ~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~ 150 (412)
T TIGR02332 84 GIASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLI 150 (412)
T ss_pred HHHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 688999999999999999988988899999999998 999999999999999999999
Q ss_pred HHHHhhc------cccchHHHHHHHHHHHHHHHHHHHhccc
Q 008565 193 VAIYLQD------NVGWAVGFGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 193 l~g~l~~------~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (561)
+++++.+ ..|||+.|++.++..++..+..++..++
T Consensus 151 ~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 151 LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 9998863 3699999999877665554444444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=210.46 Aligned_cols=174 Identities=11% Similarity=0.138 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.++.+....+......+...+.+|.+ ++++|.+.++.++..+.+.++..+++++.|+++||+ |||+++..+..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 556777778888888888888888765 567999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
+.+++.++ ++.+.+++.|++.|++.+...+...+++.|++|+++ |++.++....+..+|..++|.++
T Consensus 81 ~~~l~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~ 147 (382)
T PRK10091 81 GNAMFTLS-------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLG 147 (382)
T ss_pred HHHHHHHh-------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHH
Confidence 99988888 689999999999999999888888889999999888 99999999999999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHH
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
+++.+..|||+.|++.++..++..+..+.
T Consensus 148 ~~l~~~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 148 TYLSQEFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999899999999888766555444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=211.65 Aligned_cols=344 Identities=13% Similarity=0.093 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008565 48 RFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIP 127 (561)
Q Consensus 48 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (561)
.+......+.+|. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||.+.++..+..++.+++.+.
T Consensus 26 ~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~----- 98 (406)
T PRK15402 26 YIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA----- 98 (406)
T ss_pred HhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH-----
Confidence 3344445555655 4568999999999999999999999999999999997 99999999999888888888777
Q ss_pred ccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHH
Q 008565 128 LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGF 207 (561)
Q Consensus 128 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f 207 (561)
++.+.+++.|++.|++.+...+...+++.|.+|+++ |.+..++.+....+|..++|.+++++.+..+|++.|
T Consensus 99 --~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~ 170 (406)
T PRK15402 99 --QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMF 170 (406)
T ss_pred --ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 678889999999999998888888999999999988 888999988888899999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccc
Q 008565 208 GVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIA 287 (561)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 287 (561)
++.++..++..+..+...|+.+.+++++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 202 (406)
T PRK15402 171 VLFAALAALSFFGLWRAMPETAGRVGEKLSLK------------------------------------------------ 202 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccccccccHH------------------------------------------------
Confidence 88877766655544433332111100000000
Q ss_pred cccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCce
Q 008565 288 RTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNF 367 (561)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (561)
+..+..+ +..++++......................+.++.. . ....
T Consensus 203 -----~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~----~g~~--- 249 (406)
T PRK15402 203 -----ELGRDYK--------------------LVLKNRRFVAGALALGLVSLPLLAWIALSPVILIS-G----EQLS--- 249 (406)
T ss_pred -----HHHHHHH--------------------HHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H----hCCC---
Confidence 0000000 00011111111111111111111111111111111 0 0110
Q ss_pred eeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhH
Q 008565 368 QVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWL 447 (561)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (561)
....+.......++.++..++..+..+|.++++.+.++..+..++...+..... ....+.++.
T Consensus 250 ~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~~~~ 312 (406)
T PRK15402 250 SYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATV-----------------ISSHAYLWL 312 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-----------------cccccHHHH
Confidence 001111222222334444555555555566666777787777777666555320 011244556
Q ss_pred HhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 448 LPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 448 ~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
....++.++|.+...+..+...... +++.||+..+++++.+.++..+|+.+.+.+.+
T Consensus 313 ~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 313 TAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6777888999988887777666444 45889999999999999999999999998876
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-23 Score=212.33 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=138.8
Q ss_pred HHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHH
Q 008565 57 NLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFF 136 (561)
Q Consensus 57 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (561)
....++++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..++.+. .+.+.++
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 86 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------GAYVSLY 86 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------cCHHHHH
Confidence 333457788999999999999999999999999999999997 99999999999999998888887 6889999
Q ss_pred HHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008565 137 TALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALAL 216 (561)
Q Consensus 137 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i 216 (561)
+.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+..+|++.|++.++..++
T Consensus 87 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 87 ILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160 (399)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999998 999999999999999999999999999889999999888776665
Q ss_pred HHHHHHHhcc
Q 008565 217 ALAIFLIGIK 226 (561)
Q Consensus 217 ~~~~~~~~~~ 226 (561)
..+..+...+
T Consensus 161 ~~~~~~~~~~ 170 (399)
T TIGR00893 161 WGVLWLKFIP 170 (399)
T ss_pred HHHHhhheec
Confidence 5554444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-23 Score=211.07 Aligned_cols=172 Identities=14% Similarity=0.091 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHH-HHHHHHHHHHHH
Q 008565 41 IMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILL-SSFIYFMGMVLL 119 (561)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~-~~~~~~~~~~~~ 119 (561)
++..++..++.....+.+|.|+++++|.|..+.+++.+.+.+...+..++.|+++||+ ||||.++. +..+..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3457778888888899999999999999999999999999999999999999999997 99887654 455555566666
Q ss_pred HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhh--HHHHHHHHHHHHHHHHHHHHHh
Q 008565 120 SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSF--FNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~lG~~igp~l~g~l 197 (561)
.++ ++++.+++.|++.+.+.+...|...++..|..|++. |.+. .+..+...++|..+||.+++++
T Consensus 82 ~~~-------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l 148 (375)
T TIGR00899 82 AWN-------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWL 148 (375)
T ss_pred Hhc-------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHH
Confidence 666 577778888888887777777888888888887665 5544 5777888899999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 198 QDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 198 ~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
.+..||++.|++.++..++..+..++..|
T Consensus 149 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 149 ALGFGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99899999999988776665555444333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-23 Score=221.27 Aligned_cols=402 Identities=13% Similarity=0.144 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
+..++...++..+........+|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++++.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTI-AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 3445555666666655555556554 567999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
+++.+. ++...+++.|+++|++.+...+...+++.|.+|+++ |++++++++....+|..+||.++++
T Consensus 82 ~~~~~~-------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 82 LLCGVA-------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred HHHhCc-------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhH
Confidence 988887 688999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccc
Q 008565 197 LQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKR 276 (561)
Q Consensus 197 l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (561)
+.++.||++.|++.++..++..+..++..++.++++ .++.+..................... +.
T Consensus 149 l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~--------~~------ 212 (485)
T TIGR00711 149 IIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEG--------PE------ 212 (485)
T ss_pred hccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhC--------CC------
Confidence 999999999999888776666555554444322211 11122111111000000000000000 00
Q ss_pred ccccccccccccccchhh--hhhhh-hhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhe
Q 008565 277 TDIGQSKRTIARTNQLRF--LDKAM-IIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFT 353 (561)
Q Consensus 277 ~~~g~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (561)
.+....+.... ..... ...-...+...+.|... .+..++++.....+........++......+.++.
T Consensus 213 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 283 (485)
T TIGR00711 213 -------RGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVD--LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQ 283 (485)
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccC--HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 00000 00000000000111100 00001111111111111112222221111111211
Q ss_pred eecccccccCCCcee-eccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008565 354 KQGSTMRRSIGSNFQ-VPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGL 432 (561)
Q Consensus 354 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (561)
. .. +++ ...+.......++.++..++..+..+|.++++.+..+..+..++..++.+..
T Consensus 284 ~-------~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~------------ 342 (485)
T TIGR00711 284 Q-------VL--GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF------------ 342 (485)
T ss_pred H-------hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC------------
Confidence 1 11 111 1122333444556666666665555666667777778887777776655210
Q ss_pred CCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 433 IDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
....+.+......++.|+|.+...++......+..|++.+|+++|++++.+.+|+.+|+.+.+.+.+
T Consensus 343 ------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 ------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123445556667888999998888888888899999999999999999999999999999998876
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=222.05 Aligned_cols=155 Identities=11% Similarity=0.038 Sum_probs=127.1
Q ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHH
Q 008565 60 QYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTAL 139 (561)
Q Consensus 60 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (561)
..+.+++|++.++.|++.+.+.+++.++++++|+++||+ |||+++..++++..++.+...+... ...++...+++.|
T Consensus 53 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r 129 (467)
T PRK09556 53 NDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG--SGSVSLGLMIALW 129 (467)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHHH
Confidence 456788999999999999999999999999999999997 9999998888777776665554200 0115788999999
Q ss_pred HHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHH
Q 008565 140 YILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV---GWAVGFGVMAGALAL 216 (561)
Q Consensus 140 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~---g~~~~f~~~~~~~~i 216 (561)
++.|++.+...|...++++|++|+++ |++++|+++.+.++|..+++.+..++.+.. +|+..|.+.++..++
T Consensus 130 ~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~ 203 (467)
T PRK09556 130 ALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALI 203 (467)
T ss_pred HHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHH
Confidence 99999999989999999999999999 999999999999999999999887776543 588888776665544
Q ss_pred HHHHHHH
Q 008565 217 ALAIFLI 223 (561)
Q Consensus 217 ~~~~~~~ 223 (561)
..+..+.
T Consensus 204 ~~i~~~~ 210 (467)
T PRK09556 204 IGFIGLR 210 (467)
T ss_pred HHHHHHH
Confidence 4333333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=213.71 Aligned_cols=169 Identities=20% Similarity=0.373 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008565 41 IMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLS 120 (561)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~ 120 (561)
++..++..+......+.+|.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4556677777777778888788889999999999999999999999999999999997 999999999999999866666
Q ss_pred HhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008565 121 LAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN 200 (561)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~ 200 (561)
++ ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+.
T Consensus 81 ~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 147 (352)
T PF07690_consen 81 FA-------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISY 147 (352)
T ss_dssp HH-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred hh-------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhc
Confidence 64 356689999999999999999999999999999988 99999999999999999999999999988
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 008565 201 VGWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 201 ~g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
.||++.|++.++..++..++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 148 FGWRWAFLISAILSLIAAILFIL 170 (352)
T ss_dssp CHHCCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccchhhhhhhhHhh
Confidence 99999999998887777664333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-23 Score=219.40 Aligned_cols=401 Identities=13% Similarity=0.118 Sum_probs=230.0
Q ss_pred CCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhc-----ccccchhHHHHHHHHH
Q 008565 67 NEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSV-----IPLHYRKAVFFTALYI 141 (561)
Q Consensus 67 g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~l 141 (561)
+.+..+.+++.+.+.++..++++++|+++||+ |||++++++..++.++.+...+.... .........+++.|++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 129 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence 88899999999999999999999999999997 99999999999988887776653110 0111235678899999
Q ss_pred HHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhh--------ccccchHHHHHHHHH
Q 008565 142 LAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQ--------DNVGWAVGFGVMAGA 213 (561)
Q Consensus 142 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~--------~~~g~~~~f~~~~~~ 213 (561)
+|++.|...+...++++|++|+++ |++++++.+.+..+|..+++.+++.+. +..|||+.|++.++.
T Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~ 203 (479)
T PRK10077 130 GGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIP 203 (479)
T ss_pred HhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHH
Confidence 999999999999999999999998 999999999999999999987766543 357899999988776
Q ss_pred HHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccc-cch
Q 008565 214 LALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIART-NQL 292 (561)
Q Consensus 214 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 292 (561)
.++..+..++ .++.++....+++.++..+.. + ..... +..
T Consensus 204 ~~~~~~~~~~-l~~s~~~l~~~~~~~~~~~~~----~----------------------------------~~~~~~~~~ 244 (479)
T PRK10077 204 ALLFLMLLYF-VPETPRYLMSRGKQEQAEGIL----R----------------------------------KIMGNTLAT 244 (479)
T ss_pred HHHHHHHHHc-CCCCcHHHHHcCCHHHHHHHH----H----------------------------------HHcCChhHH
Confidence 6665444333 332111000001111100000 0 00000 000
Q ss_pred hhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHH-HHHHHHHHHHHHHhhccch--heeecccccccCCCceee
Q 008565 293 RFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLI-PIWLSCLMFSCILVQLHTF--FTKQGSTMRRSIGSNFQV 369 (561)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 369 (561)
...+..+.... .+....+..+... ......... ..+.+.... ............ +...
T Consensus 245 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~i~~~~--g~~~ 305 (479)
T PRK10077 245 QALQEIKHSLD----------------HGRKTGGKLLMFGVGVIVIGVML-SVFQQFVGINVVLYYAPEIFKTL--GAST 305 (479)
T ss_pred HHHHHHHHHHH----------------HhhhhhhhhcchhHHHHHHHHHH-HHHHHHhChhHHHHHHHHHHHHc--CCCC
Confidence 00000000000 0000000000000 000100000 111111100 000000000011 1111
Q ss_pred c-cccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHH
Q 008565 370 P-PASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLL 448 (561)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (561)
. .........+..++..++..+..+|.++++.+..+..+..++++++..... .+....+..
T Consensus 306 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~------------------~~~~~~~~~ 367 (479)
T PRK10077 306 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------------TQAPGIVAL 367 (479)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh------------------cCcccHHHH
Confidence 1 112222223333334444333344455667777888888887776654320 011122233
Q ss_pred hHHHHHHHhhhhh-hhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHH
Q 008565 449 PQYLLVSICDVFG-IVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWV 527 (561)
Q Consensus 449 ~~~~l~g~g~~~~-~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 527 (561)
...++.+++.... .|..+.++.|..|++.|++++|+.+..+.+++.+++.+.+.+.+. +|..++. +....|++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~---~~~~~~~---~~~~~~~~ 441 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN---SWLVAHF---HNGFSYWI 441 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc---cchhhhc---cCccHHHH
Confidence 3344445544433 377889999999999999999999999999999999888876531 1222211 12345677
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccc
Q 008565 528 LAGLSALNLCVFIWIAKRFVYKKVLEDES 556 (561)
Q Consensus 528 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (561)
.+++++++.++.+.+.+|.++++.+|.++
T Consensus 442 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 470 (479)
T PRK10077 442 YGCMGVLAALFMWKFVPETKGKTLEEMEA 470 (479)
T ss_pred HHHHHHHHHHHHHhccccCCCCCHHHHHH
Confidence 77777777777777777777776665443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=212.76 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=125.9
Q ss_pred HHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHH
Q 008565 57 NLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFF 136 (561)
Q Consensus 57 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (561)
+...|+.++ |++..+.++..+.+.++..++++++|+++||+ |||++++++.++.+++.+++.+.. ....+...++
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~ 124 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVP---WATSSIAVMF 124 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhh---cccccHHHHH
Confidence 344567777 99999999999999999999999999999997 999999999998888887777651 0012567788
Q ss_pred HHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHH-HHHHHHHHhhccccchHHHHHHHHHHH
Q 008565 137 TALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGAS-AAVLVAIYLQDNVGWAVGFGVMAGALA 215 (561)
Q Consensus 137 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~-igp~l~g~l~~~~g~~~~f~~~~~~~~ 215 (561)
+.|++.|++.+...+.....+.|++|+++ |++++++++.+.++|.. .+|.++..+....||++.|++.++..+
T Consensus 125 ~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~ 198 (452)
T PRK11273 125 VLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAI 198 (452)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 89999999999888888888999999998 99999999999999874 456544334334589999998877655
Q ss_pred HHHHHHHHhcc
Q 008565 216 LALAIFLIGIK 226 (561)
Q Consensus 216 i~~~~~~~~~~ 226 (561)
+..+..++..+
T Consensus 199 ~~~~l~~~~~~ 209 (452)
T PRK11273 199 LVALFAFAMMR 209 (452)
T ss_pred HHHHHHHHHcc
Confidence 54444444333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-21 Score=207.63 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CChhhhhH---HHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 42 MVEMAQRFAYYGLAGNLIQYLTNVLN---EPTATAAQ---DVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~---~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
+..+++.+.... .+++..++.++++ .+..+.+. ..+...++..++++++|+++||+ ||||++.+++.++.++
T Consensus 29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 445555555544 5666677888874 45554333 34444555559999999999997 9999999999999999
Q ss_pred HHHHHHhhhc-ccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSV-IPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 116 ~~~~~~~~~~-~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+++.+.... .....++..+++.|+++|++.|...+...++++|++|+++ |++..+..+.+.+.|..+++.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~ 180 (432)
T PRK10406 107 SLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVV 180 (432)
T ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9988876100 0000123468899999999999999999999999999998 99999998888888888888766
Q ss_pred HHhh--------ccccchHHHHHHHHHHHHH
Q 008565 195 IYLQ--------DNVGWAVGFGVMAGALALA 217 (561)
Q Consensus 195 g~l~--------~~~g~~~~f~~~~~~~~i~ 217 (561)
..+. +.+|||..|++.++..++.
T Consensus 181 ~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 181 VVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 5543 2579999998876655443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-22 Score=205.01 Aligned_cols=348 Identities=16% Similarity=0.129 Sum_probs=220.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|..+.++...++..++.......++.. .+++|.+..+.+++.+.+.+...++.+++|+++||+ ||||+++++..+.++
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 345566777777777665555555554 467899999999999999999999999999999997 999999999999988
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
+.+.+.+. .+. ++.|+++|++.+...|...++++|++|+++ |++++++.+...++|..+||.++
T Consensus 81 ~~~~~~~~-------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lg 144 (393)
T PRK11195 81 GCLLMLFG-------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLG 144 (393)
T ss_pred HHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776665 232 678999999999999999999999999998 99999999999999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCC-CchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVG-SPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
|++.+. .|+..+.+.+...+++.+... ..++.+.++++. .+.....
T Consensus 145 G~l~~~-~~~~~~~i~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~------------------------------- 191 (393)
T PRK11195 145 GALADP-HAEAALAVCALIYLLAALFNL-FIPRLGARRPGQSWNPIALL------------------------------- 191 (393)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHh-cCCCCcccccccCCCHHHHH-------------------------------
Confidence 999885 377676665554444433222 222211111000 0000000
Q ss_pred cccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---c
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLH---T 350 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 350 (561)
.++.+..+. .| ++ +...... ....+++....... .
T Consensus 192 ------------------~~~~~~~~~------------l~--------~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK11195 192 ------------------RDFFHACRV------------LW--------RD-KLGRFSL---AGTTLFWGAGATLRFLVL 229 (393)
T ss_pred ------------------HHHHHHHHH------------HH--------hC-chhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 000000000 00 00 1110000 00111111111111 1
Q ss_pred hheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008565 351 FFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTAREN 430 (561)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (561)
.+.....+.+ ....+.......++.++..++..|..++...++.+..++.+ .+....+...
T Consensus 230 ~~~~~~lg~s-------~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~----------- 290 (393)
T PRK11195 230 AWAPVALGIT-------LNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQ----------- 290 (393)
T ss_pred HHHHHHcCCC-------hhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHH-----------
Confidence 1111111111 11123344455566666666666655555555555555433 3332222221
Q ss_pred CCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhH-HHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 431 GLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAM-RSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~-rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
.+.+......++.|++.+...++.++.+++..|++. +|++.++.++.+.++..++..+.+.+..
T Consensus 291 -----------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T PRK11195 291 -----------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK 355 (393)
T ss_pred -----------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 234445566677889888888888899998877765 7999999999999999999999886643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-22 Score=206.50 Aligned_cols=174 Identities=10% Similarity=0.089 Sum_probs=145.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
+++|..+...+..++.....+.....+|. +.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 34455666666666666666556666666 4578999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
..++.+++.+. ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++..+....+|+.++|
T Consensus 82 ~~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 82 MILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred HHHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHH
Confidence 98888888887 678889999999999999888888999999999888 99999998888899999999
Q ss_pred HHHHHhh-ccccchHHHHHHHHHHHHHHHH
Q 008565 192 LVAIYLQ-DNVGWAVGFGVMAGALALALAI 220 (561)
Q Consensus 192 ~l~g~l~-~~~g~~~~f~~~~~~~~i~~~~ 220 (561)
.+.+++. +..|||+.|.+.++..++..+.
T Consensus 149 ~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 149 IIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 9988875 4579999998877665554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-23 Score=210.86 Aligned_cols=358 Identities=12% Similarity=0.053 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008565 50 AYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH 129 (561)
Q Consensus 50 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (561)
..|...+. ..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.+.
T Consensus 18 ~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~------- 88 (377)
T TIGR00890 18 YVYTWTLL-APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA------- 88 (377)
T ss_pred HHhhhhhH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH-------
Confidence 34544444 4567788999999999999999999999999999999997 99999999999999999888888
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGV 209 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~ 209 (561)
++.+.+++.|++.|++.+...+.....+.+.+| ++ |+++.+..+.+.++|..+++.+.+.+.+..|||+.|++
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 688999999999999998877777888888886 45 89999999999999988877777777777899999998
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccc
Q 008565 210 MAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIART 289 (561)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 289 (561)
.++..++..+..+...++.++++.+++ . +.+ +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~--------~~~------~----------- 193 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGYPPGQLIKTN-----------------------I--------EVS------V----------- 193 (377)
T ss_pred HHHHHHHHHHHHHHheecCchhccccC-----------------------c--------ccc------h-----------
Confidence 887766655544443322111100000 0 000 0
Q ss_pred cchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceee
Q 008565 290 NQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQV 369 (561)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (561)
++.+.. +..++++................... ..+..+... .... ..
T Consensus 194 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~---~~ 240 (377)
T TIGR00890 194 KDYTVW------------------------EMLRTPQFWVLYLSFFLNAVSGLLLI----GLYKPYGQS--LGLS---DG 240 (377)
T ss_pred hhhhHH------------------------HHHcCccHHHHHHHHHHHhHHHHHHH----HHHHHHHHH--cCCC---HH
Confidence 000000 00001111111111111111111111 111111001 1110 01
Q ss_pred ccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHh
Q 008565 370 PPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLP 449 (561)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (561)
..........+...+..++..+..+|.++++.+..+..+..++.+.+.... ....+....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 300 (377)
T TIGR00890 241 FLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP--------------------MLNDVLFLA 300 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc--------------------cchhHHHHH
Confidence 112233344444444555544444445555566667777777665554421 111222333
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHH
Q 008565 450 QYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLA 529 (561)
Q Consensus 450 ~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (561)
..++.+++.+...+....+..|..|++.|+++.|+.+....+|..+++.+.+.+.+.. ++...|.+.+
T Consensus 301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------------g~~~~f~~~~ 368 (377)
T TIGR00890 301 TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI------------GFEYTFIVTG 368 (377)
T ss_pred HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh------------chhhHHHHHH
Confidence 3455566666666667788899999999999999999999999999999999987622 2344566656
Q ss_pred HHHHHHH
Q 008565 530 GLSALNL 536 (561)
Q Consensus 530 ~i~~~~~ 536 (561)
+++++++
T Consensus 369 ~~~~~~~ 375 (377)
T TIGR00890 369 AFALTSL 375 (377)
T ss_pred HHHHHhc
Confidence 5555543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=211.42 Aligned_cols=164 Identities=19% Similarity=0.177 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
++.........+...+..+.....+ .++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~ 94 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIM-YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 3444445555555556665554444 456788999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++.++..++ ++.+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++.+.+..+|.++++.+
T Consensus 95 ~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l 161 (426)
T PRK12307 95 VGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYF 161 (426)
T ss_pred HHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHH
Confidence 999888888 688899999999999999989999999999999998 9999999999999999999999
Q ss_pred HHHhhccccchHHHHHHHH
Q 008565 194 AIYLQDNVGWAVGFGVMAG 212 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~ 212 (561)
.+.+.+..||++.|++..+
T Consensus 162 ~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 162 MPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHcccCCHHHHHHHHHH
Confidence 9999988999999987543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=214.16 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhH
Q 008565 54 LAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKA 133 (561)
Q Consensus 54 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (561)
+..+++. +.+++|.+.++.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++++++.++ ++.+
T Consensus 38 ~~~~~~~-i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-------~~~~ 108 (455)
T TIGR00892 38 VTVFFKE-LQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS-------SNVI 108 (455)
T ss_pred hhhhHHH-HHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh-------hhHH
Confidence 3344544 4578999999999999999999999999999999997 99999999998888888888777 4666
Q ss_pred HHHH-HHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008565 134 VFFT-ALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAG 212 (561)
Q Consensus 134 ~l~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~ 212 (561)
.+++ .|++.|++.+...+...+++.+.++ ++ |+++.++.+.+..+|..++|.+++++.+.+|||+.|++.++
T Consensus 109 ~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~ 181 (455)
T TIGR00892 109 ELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGG 181 (455)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 6654 4688899988766777788889886 56 99999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhc
Q 008565 213 ALALALAIFLIGI 225 (561)
Q Consensus 213 ~~~i~~~~~~~~~ 225 (561)
..+++.+..++.+
T Consensus 182 ~~~~~~v~~~~~~ 194 (455)
T TIGR00892 182 LLLHCCVCGALMR 194 (455)
T ss_pred HHHHHHHHHHHhC
Confidence 7766655444443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=210.99 Aligned_cols=178 Identities=16% Similarity=0.110 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNV----LNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~----lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
.+..+.+..+........+....+..-.+. .+.+..+.+++.+...++..++.+++|+++||+ |||+++.+++++
T Consensus 17 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~ 95 (502)
T TIGR00887 17 AIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELII 95 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 333344444555444444444444432221 234566778999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
..++.++..++... ....+...++++|++.|++.|...+..+.+++|.+|+++ |+++.++.+....+|..+++
T Consensus 96 ~~v~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 96 MIIATVASGLSPGS-SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHccCc-ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHH
Confidence 99988887776200 000126789999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHhhc-----------------------cccchHHHHHHHHHHHHHHHHH
Q 008565 192 LVAIYLQD-----------------------NVGWAVGFGVMAGALALALAIF 221 (561)
Q Consensus 192 ~l~g~l~~-----------------------~~g~~~~f~~~~~~~~i~~~~~ 221 (561)
.++.++.. .++||+.|.+.++..++.++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 88775531 2479999977776655554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-22 Score=205.20 Aligned_cols=178 Identities=16% Similarity=0.193 Sum_probs=151.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+++..+.+....+....+.....+.+|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 34555555555566666666666666654 567999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++.+.+.+. ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++..+....+|..++|.
T Consensus 81 ~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~ 147 (385)
T TIGR00710 81 ALSSLGLALS-------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPL 147 (385)
T ss_pred HHHHHHHHHH-------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9888888887 688889999999999999999999999999999888 999999999999999999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
+++++.+..+|+..|++.++..++..+..++..
T Consensus 148 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 148 LGGYILVWLSWHAIFAFLSLAGILLSALIFFIL 180 (385)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999989999999888776666555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=204.04 Aligned_cols=345 Identities=18% Similarity=0.255 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008565 39 FIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVL 118 (561)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~ 118 (561)
.+....+...+..+...+..+.|.+ ++|.+..+.++..+...++..++.++.|+++||+ |||+.+..+..+..++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 4455677788888888888888875 5799999999999999999999999999999997 9999999999999999888
Q ss_pred HHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 119 LSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQ 198 (561)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~ 198 (561)
..+. ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++..+...++|..++|.+++.+.
T Consensus 81 ~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 147 (352)
T cd06174 81 LAFA-------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLA 147 (352)
T ss_pred HHHh-------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887 688899999999999999999999999999999988 999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccccc
Q 008565 199 DNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTD 278 (561)
Q Consensus 199 ~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (561)
+..+|++.|++.++..++..+......|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 175 (352)
T cd06174 148 ESLGWRWLFLILAILGLLLALLLLFLLR---------------------------------------------------- 175 (352)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 9889999998888776666555433210
Q ss_pred ccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeeccc
Q 008565 279 IGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGST 358 (561)
Q Consensus 279 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (561)
+..............+.......+.+.... .+
T Consensus 176 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 207 (352)
T cd06174 176 -----------------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEV-LG 207 (352)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cC
Confidence 000000000111111111111111111110 00
Q ss_pred ccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 008565 359 MRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQ-RIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPK 437 (561)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (561)
.+ ....+.......+...+..++..+..+|.++++ .+..+..+..++...+....
T Consensus 208 ~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------- 263 (352)
T cd06174 208 LS-------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP----------------- 263 (352)
T ss_pred CC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 01 111223344445555555555444444445555 67778888777777665532
Q ss_pred CcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCc
Q 008565 438 AIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLN 517 (561)
Q Consensus 438 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~ 517 (561)
+.+......++.+++.+...+...++..|..|++.|++.+|+.+....++..+++.+.+.+.+..
T Consensus 264 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~---------- 328 (352)
T cd06174 264 -----SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG---------- 328 (352)
T ss_pred -----cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 35566778888999999999999999999999999999999999999999999999999997622
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 008565 518 RAHLDYFYWVLAGLSALNLCVF 539 (561)
Q Consensus 518 ~~~~~~~~~~~~~i~~~~~~~~ 539 (561)
++...+++.+++.+++.+..
T Consensus 329 --~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 329 --GYGGVFLILAALALLAALLL 348 (352)
T ss_pred --CcchHHHHHHHHHHHHHHHh
Confidence 22446677777777766554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=219.81 Aligned_cols=330 Identities=30% Similarity=0.522 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcc-c
Q 008565 49 FAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVI-P 127 (561)
Q Consensus 49 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~-~ 127 (561)
++||++...+..|+.+.+|++.+++..+...+.....+.++++|+++|+++||++++.++.++..+|..++.+.+.+. .
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 468999999999999999999999999999999999999999999999999999999999999999988887753211 1
Q ss_pred ccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc-------
Q 008565 128 LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN------- 200 (561)
Q Consensus 128 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~------- 200 (561)
........+++..+.++|.|+..|+..++.+|+++++++ ..|.+.+.++++++|+|+.+++.+.+++.+.
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 112234466788899999999999999999999986542 2288899999999999999999999999744
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccccccc
Q 008565 201 VGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIG 280 (561)
Q Consensus 201 ~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 280 (561)
.+|..+|.+.++.++++++++...++++++++|+.++...+.+++....++++....+
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~---------------------- 215 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE---------------------- 215 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc----------------------
Confidence 3699999999999999988888777777777777776666666665555443211000
Q ss_pred ccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeeccccc
Q 008565 281 QSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMR 360 (561)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (561)
....++.|.+.... ..+.++++|++++.+.+++...+||..+.|..+.+..+...++
T Consensus 216 --------~~~~~~ld~a~~~~---------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~ 272 (654)
T TIGR00926 216 --------HWPLHWLDYAKDKH---------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMD 272 (654)
T ss_pred --------ccchhHHHHhcccc---------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhc
Confidence 00123333322111 1244577889999999999999999999999999888887777
Q ss_pred ccCCCceeeccccccchhhHHHHHHHHHhh--------cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008565 361 RSIGSNFQVPPASLQSLVGLSILVAVPVIT--------GHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTA 427 (561)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~ 427 (561)
.+++ ++.+++..++.+|++.++++.|++. |+..++++..++++|+++..+++.+....+.++..+.
T Consensus 273 ~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~ 346 (654)
T TIGR00926 273 GDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVNPTL 346 (654)
T ss_pred CccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7776 7888999999999999999988833 3445578899999999999999999999987775443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=211.72 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh-hhH-----HHHHHHHHHHHhhhHHHHHhhhccCchHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT-AAQ-----DVNNWVGISSIFPLLGAFVADSYLGRFNTILLS 108 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-~~~-----~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~ 108 (561)
+..+...+..+++.+-+.. ..+...++.++++.+..+ ..+ ..++..++..++++++|+++||+ |||+++.++
T Consensus 16 ~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~ 93 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 3444455666666655543 445556777777644322 122 24667788899999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccchhH--------HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHH
Q 008565 109 SFIYFMGMVLLSLAVSVIPLHYRKA--------VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWY 180 (561)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (561)
++++.++.+++.++ ++.. .+++.|+++|++.|+..+...++++|++|+++ |++..++..
T Consensus 94 ~~l~~i~~~~~a~~-------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~ 160 (490)
T PRK10642 94 IVIMSISTFCIGLI-------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLD 160 (490)
T ss_pred HHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHH
Confidence 99999999999988 4544 37899999999999999999999999999998 999999988
Q ss_pred HHHHHHHHHHHHHHHHhh--------ccccchHHHHHHHHHHHH
Q 008565 181 LGIVFGASAAVLVAIYLQ--------DNVGWAVGFGVMAGALAL 216 (561)
Q Consensus 181 ~~~~lG~~igp~l~g~l~--------~~~g~~~~f~~~~~~~~i 216 (561)
.+..+|..+|+.+...+. ..+|||+.|++.++..++
T Consensus 161 ~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 161 FGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 888888888876655442 257999999887654443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-21 Score=202.79 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008565 50 AYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH 129 (561)
Q Consensus 50 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (561)
......+.+|. +.+++|.+..+.++..+++.++..+++++.|+++||+ |||++++.+..++.++.+++.++
T Consensus 31 ~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------- 101 (413)
T PRK15403 31 TTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------- 101 (413)
T ss_pred HHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------
Confidence 33334444444 5678999999999999999999999999999999997 99999999999999999888887
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGV 209 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~ 209 (561)
++...+++.|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|..+||.+++++.+..||++.|++
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 688899999999999988766777788999999988 99999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHH
Q 008565 210 MAGALALALAIFLI 223 (561)
Q Consensus 210 ~~~~~~i~~~~~~~ 223 (561)
.++..+++.+..+.
T Consensus 176 ~~~~~~i~~~~~~~ 189 (413)
T PRK15403 176 IAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHH
Confidence 88776666554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-22 Score=204.61 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.+...+...+......+.....+ .++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 17 RAIILSFLIMLMDGYDLAAMGFAA-PAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH-HHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHH
Confidence 334444444555544454444444 455677999999999999999999999999999999997 999999999988888
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
+.+++.+. ++.+.+++.+++.|++.+...+...+++.|.+|+++ |++++++.+.+..+|..++|.++
T Consensus 95 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 95 FTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred HHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHH
Confidence 88887777 578888999999999999999999999999999988 99999999999999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
+++.+..||+..|++.++..++..+..+...
T Consensus 162 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred HHHhhcccceeehhhhhhHHHHHHHHHHHhC
Confidence 9999999999999888655444444444333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=214.75 Aligned_cols=145 Identities=17% Similarity=0.339 Sum_probs=124.1
Q ss_pred CChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhcc
Q 008565 68 EPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEG 147 (561)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g 147 (561)
.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.+.. ...+.+.+++.|++.|++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~l~G~~~~ 142 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAA----FALSVEMLIVGRVLLGIGVG 142 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhc----cccchHHHHHHHHHHHhhhh
Confidence 3389999999999999999999999999997 999999999999998888886652 11345588999999999999
Q ss_pred ccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH---HHhhccccchHHHHHHHHHHHHHHHHHHH
Q 008565 148 GHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA---IYLQDNVGWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~---g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
...+...++++|.+|+++ |++++++.+.+.++|..+++.++ +.+.+..+||+.|++.++..++.++..++
T Consensus 143 ~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 143 IASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998 99999999999999999999998 66667789999999866655555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-21 Score=203.51 Aligned_cols=167 Identities=12% Similarity=0.085 Sum_probs=128.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChhhhhHHH-----HHHHHHHHHhhhHHHHHhhhccCchHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVL--NEPTATAAQDV-----NNWVGISSIFPLLGAFVADSYLGRFNTIL 106 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~lsDr~~Grk~~~~ 106 (561)
+|..+...+..+++...........+.++.+++ +.++.+ +++. ++..++..++.++.|+++||+ |||+++.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~ 98 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHH
Confidence 344444555666666666554445555666554 666663 4443 234455678888899999997 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhH--------HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHH
Q 008565 107 LSSFIYFMGMVLLSLAVSVIPLHYRKA--------VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNW 178 (561)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (561)
++.+++.++++++.++ ++.. .+++.|+++|++.|...+....++.|++|+++ |+...+.
T Consensus 99 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~ 165 (438)
T PRK09952 99 LTVWMMGIATALIGLL-------PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSG 165 (438)
T ss_pred HHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHH
Confidence 9999999999999888 4544 58889999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------ccccchHHHHHHHHHHH
Q 008565 179 WYLGIVFGASAAVLVAIYLQ--------DNVGWAVGFGVMAGALA 215 (561)
Q Consensus 179 ~~~~~~lG~~igp~l~g~l~--------~~~g~~~~f~~~~~~~~ 215 (561)
.+.+..+|..++..+..++. +.+|||..|++.++..+
T Consensus 166 ~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 166 VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 88899999988887776654 25799999988766543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=202.11 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=140.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
.|.++.++...++..+....+.+.+|.|.. ++|.|..+.|++.+.+.++..+++++.|+++||+ |||+.+..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 356778888888888888888899999886 5899999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++...+.+. ++.+.+++.|++.|++.+...+...+.+.+..++++ |+++++.++.+.++|..+||.+
T Consensus 83 ~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~ 149 (381)
T PRK03633 83 AGCAGLGLM-------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLL 149 (381)
T ss_pred HHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 988888887 688899999999999999888888888888888887 9999999999999999999999
Q ss_pred HHHhhccccchHH
Q 008565 194 AIYLQDNVGWAVG 206 (561)
Q Consensus 194 ~g~l~~~~g~~~~ 206 (561)
++.+.+...+...
T Consensus 150 ~~~l~~~~~~~~~ 162 (381)
T PRK03633 150 VSKVSTELMSVLP 162 (381)
T ss_pred HhcccccccchHH
Confidence 9998765433333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=197.95 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLA---GNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
.-+.++...++...++|... .+..+++.++.++|.+|.|++.+.+.+.+.++..+.|.++||. +.|..+.+++++.
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLils 104 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHH
Confidence 34556677778888888665 4455688899999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
++..++++++ ++...+.+..++.|...|.-.|++...++.++|+++ ||+..++++.+-|+|+.+.|+
T Consensus 105 ai~nil~Gfs-------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~ 171 (448)
T COG2271 105 AIVNILFGFS-------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPL 171 (448)
T ss_pred HHHHHHHhhh-------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHH
Confidence 9999999999 688888899999999999999999999999999999 999999999999999999999
Q ss_pred HH--HHhhccccchHHHHHHHHHHHHHHHHHHHhccc
Q 008565 193 VA--IYLQDNVGWAVGFGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 193 l~--g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (561)
+. +++.++.+|+..|+++++++++..+..++..++
T Consensus 172 ~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 172 VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99 999988899999999998876665555554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=202.55 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=145.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
.+|.++.+....++..+......+.+|.+ .+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+.+..+..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 34555555555666666666566666655 467999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++.+++.+. ++.+.+++.|++.|++.+...+....+..|.+++++ |+++.+..+.+..+|..++|.
T Consensus 84 ~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 150 (394)
T PRK11652 84 ILGTLVALFA-------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPL 150 (394)
T ss_pred HHHHHHHHHH-------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777 678889999999999988877888888899998877 999999999999999999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHH
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALAIF 221 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (561)
+++++.+..||+..|++.++..++..+..
T Consensus 151 i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 151 IGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 99999988999999988776555444333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-21 Score=200.77 Aligned_cols=176 Identities=12% Similarity=0.084 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHH-HHHHhhhHHHHHhhhccCchHHHH-HHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVG-ISSIFPLLGAFVADSYLGRFNTIL-LSSFIYF 113 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grk~~~~-~~~~~~~ 113 (561)
..+.+++..++..++...+.+.++.|+.+++|.|.++.|++.+...+ +..++++++|+ +||+ ||||.++ .+.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence 35566667888999988899999999999999999999999877655 45555655565 9997 9988754 5555555
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccch--hhHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKS--SFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~lG~~igp 191 (561)
++..+..++ ++.+.+++.+.+.+...+...|...++..|..+++. |. ...+..+.+.++|.++||
T Consensus 94 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~ 160 (393)
T PRK15011 94 LACTLFAWN-------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGP 160 (393)
T ss_pred HHHHHHHHh-------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhh
Confidence 666666665 466665544444443334566777788888776554 43 344778889999999999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 192 LVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
.+++++.+++|||..|++.++..++..+..+...|
T Consensus 161 ~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 161 PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999899999998887766655554444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=208.58 Aligned_cols=393 Identities=10% Similarity=-0.004 Sum_probs=226.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+..|.+....++..++++...++++.|+++++|+++.+.|++.+...++..+++++.|+++||+ |||++++++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4577777788888888888999999999999999999999999999999999999999999997 999999887665554
Q ss_pred HHHHHHHhhhcccccchhH-HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKA-VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~-~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+......... ..... .......+.++..+...+.....+.++.++..+ .++..++..+...++|..++|.+
T Consensus 89 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~g~~~~~~~~g~~i~~~~ 160 (420)
T PRK09528 89 LFGPFFIYVF----APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSR----RSGFEYGRARMWGSLGWALCAFI 160 (420)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHh----hccccchhhHHhhhHHHHHHHHH
Confidence 4332211100 00000 011122222332222222222233333322111 16667888888899999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
++++.+ .+|+..|++.++..++..+..+..+++.++++...+ +.++
T Consensus 161 ~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~- 206 (420)
T PRK09528 161 AGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN--------------------------------ALGA- 206 (420)
T ss_pred HHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc--------------------------------chhc-
Confidence 999986 489999988877666665555443332111100000 0000
Q ss_pred cccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchh
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIW-LSCLMFSCILVQLHTFF 352 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 352 (561)
+ + +..+..+.... + ++ +.+....... .....+.....+.+.++
T Consensus 207 ~---~-----------~~~~~~~~~~~-------------l--------~~-~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 250 (420)
T PRK09528 207 N---A-----------SAVSLKDALAL-------------L--------KL-PKFWFLVLYVIGVACFYDVFDQQFPNFF 250 (420)
T ss_pred c---c-----------ccccHHHHHHH-------------c--------cC-CCeEeehHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000000000 0 00 1111111111 11111122222222222
Q ss_pred eeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008565 353 TKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGL 432 (561)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (561)
.... .+...+ ....+....++.+...+..++..+..+|.++++.+..+.++..++.+...+.+
T Consensus 251 ~~~~--~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~------------ 313 (420)
T PRK09528 251 ASFF--ATPEQG---TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT------------ 313 (420)
T ss_pred HHHH--hccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc------------
Confidence 2211 011110 00112333333444444455544444555555667777777777766655532
Q ss_pred CCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHH-HHHHhhhhhhhhhHHHhhhcccccCCc
Q 008565 433 IDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAA-YISIIGVGSFINTGVIEVVEAITHRSW 511 (561)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~g~~lg~~v~~~i~~~~~~~~ 511 (561)
+.+.+....++.+++.....+....++.+..|++.+++..+. +++...+|..+++.+.+.+.|..
T Consensus 314 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---- 379 (420)
T PRK09528 314 ----------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---- 379 (420)
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 344556667777888877778888899999999999988766 67788999999999999998732
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 512 LVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
++...|...+++.++..++.+...++
T Consensus 380 --------G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 380 --------GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred --------CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23456777777777766665555443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=208.94 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=144.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
.+++.+..+++..++..+..+.....+| ++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 3445555566666666666665555554 56678999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.+++.+++.+. ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+.+.++|..++|
T Consensus 95 ~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~ 161 (496)
T PRK03893 95 FSVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAA 161 (496)
T ss_pred HHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 99998888887 688899999999999999888999999999999998 99999999999999999999
Q ss_pred HHHHHhhccccchHHHHHHHH
Q 008565 192 LVAIYLQDNVGWAVGFGVMAG 212 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~~ 212 (561)
.+.+++.+..||++.|++.++
T Consensus 162 ~~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 162 QVYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999976544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=207.31 Aligned_cols=176 Identities=14% Similarity=0.029 Sum_probs=136.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+.+.+.......++.....+.+.+.+| ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 334444444555555566666655555 55778999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++.++..+. .+...+++.|++.|++.+... ....+++|++|+++ |++++++.+...++|..+++.
T Consensus 112 ~~~~~~~~~~-------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~ 177 (476)
T PLN00028 112 APAVFCMSLV-------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQL 177 (476)
T ss_pred HHHHHHHHHh-------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHH
Confidence 8888888877 578888899999999887653 45567899999998 999999988877888887776
Q ss_pred HHHHhh----c-----cccchHHHHHHHHHHHHHHHHHHHh
Q 008565 193 VAIYLQ----D-----NVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 193 l~g~l~----~-----~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+.+.+. + ..|||+.|++.+++.++..+..++.
T Consensus 178 ~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 178 LMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 665442 2 2589999998887766555444443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=203.53 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=148.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
.+++....+++..+...+..+......|. +++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~ 86 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVL 86 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 45566666777777888777777666664 5678999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.+++.+++.+. ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+.+..+|..+++
T Consensus 87 ~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~ 153 (405)
T TIGR00891 87 FSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAA 153 (405)
T ss_pred HHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHH
Confidence 98888888887 688889999999999999999999999999999988 99999999999999999999
Q ss_pred HHHHHhhcccc--chHHHHHHHHHHHHH
Q 008565 192 LVAIYLQDNVG--WAVGFGVMAGALALA 217 (561)
Q Consensus 192 ~l~g~l~~~~g--~~~~f~~~~~~~~i~ 217 (561)
.+++.+.+..+ |++.|++.++..++.
T Consensus 154 ~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 154 QVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999887666 999998765544443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-21 Score=201.70 Aligned_cols=359 Identities=12% Similarity=0.101 Sum_probs=247.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|.+..++..+++.+++......-++-++. ++.-|+...+++.....+...+..+++|.++||+ .|||+++.+-.+.++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 34555666777777777666665665554 4567889999999999999999999999999997 999999999887766
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
....+.+... ....+++.+++..++.|++.+...|+.++++.|++|+++ ...+.++.++..++...+||.++
T Consensus 88 ~~~~L~~l~~--~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalg 159 (524)
T PF05977_consen 88 VALLLAVLAF--FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALG 159 (524)
T ss_pred HHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHH
Confidence 5544433311 122467788888899999999999999999999999998 88999999999999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCc
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDD 274 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (561)
|.+...+|-...|.+.++..++.+..+...+++.++++.++++. .+
T Consensus 160 G~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~---~~------------------------------- 205 (524)
T PF05977_consen 160 GILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPRERF---FS------------------------------- 205 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchhhh---hh-------------------------------
Confidence 99998889999999998877776665554433221111111000 00
Q ss_pred ccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhee
Q 008565 275 KRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTK 354 (561)
Q Consensus 275 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (561)
+..+..+ ...+.+.+...+. ...++..........+..
T Consensus 206 ------------------~l~~G~r---------------------yv~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl 243 (524)
T PF05977_consen 206 ------------------ALREGLR---------------------YVRSSPPLRSVLL---RSFLFNLFASAVWALLPL 243 (524)
T ss_pred ------------------hHHHHHH---------------------HHhcchHHHHHHH---HHHHHHHhhhHHHHhhhH
Confidence 0000000 0000011111111 111111111111111111
Q ss_pred ecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008565 355 QGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLID 434 (561)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (561)
.. ...++ +-....+.+....+++.++...+..+..++.+..+.+..+.++.+++++.+++.
T Consensus 244 ~a---~~~l~-~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--------------- 304 (524)
T PF05977_consen 244 FA---RDVLG-GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--------------- 304 (524)
T ss_pred HH---HHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---------------
Confidence 11 11111 111223445566677777777777776666777777778888888777776664
Q ss_pred CCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 435 SPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
.+.+..++.+++.|++........++..++..|+++||++.+++++....+..+|..+.|.+.+
T Consensus 305 -------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 305 -------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456667778888999999999999999999999999999999999999999999999999987
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-21 Score=199.32 Aligned_cols=170 Identities=13% Similarity=0.074 Sum_probs=139.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
.-+|++.......++..++.+...++++.|+ +++|.+.++.++..+.+.++..++.+++|+++||+ ||||++..+..+
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 4456777777788888888887888899988 56899999999999999999999999999999997 999999999988
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHH-HHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGA-SAA 190 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~-~ig 190 (561)
..++.+++.... ....++..+++.|++.|++.+...+...+.+.+.+|+++ |++++|+.+.+.++|. .++
T Consensus 88 ~~~~~~~~~~~~---~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g 158 (402)
T TIGR00897 88 WCVGHAAFIVFG---LGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFG 158 (402)
T ss_pred HHHHHHHHHHHh---ccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 888766543210 001367778889999999988777777788899999988 9999999999999996 589
Q ss_pred HHHHHHhhccccchHHHHHHHH
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAG 212 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~ 212 (561)
|.+++++.+..||+..++....
T Consensus 159 ~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 159 SYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHhcccccchHHHHHHHHH
Confidence 9999999888887666554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-21 Score=197.25 Aligned_cols=365 Identities=10% Similarity=-0.039 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH-HHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI-YFMGM 116 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~-~~~~~ 116 (561)
+.+....++...++....+++|.|++ ++|+|.++.|++.+.+.+...+++++.|.++||+ ||++.....+.. ..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 34555566666666677899999995 5899999999999999999999999999999997 985433221111 11111
Q ss_pred -HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 117 -VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
...... ++.+.+++.|++++.+.+...|...++..+. +++ |++.++......++|.+++|.+++
T Consensus 85 ~~~~~~~-------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG~~~g~~l~g 149 (382)
T TIGR00902 85 AAFSAGA-------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAAFIIGSALFG 149 (382)
T ss_pred HHHHHhh-------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHHHHHHHHHHH
Confidence 122233 5788888999999988888888888877653 344 888899999999999999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcc
Q 008565 196 YLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDK 275 (561)
Q Consensus 196 ~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (561)
++.+.+||+..|++..+..++.+ ..+...++. +++++. + ++
T Consensus 150 ~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~-------------------------------~-~~--- 190 (382)
T TIGR00902 150 GLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAI-------------------------------P-ED--- 190 (382)
T ss_pred HHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCccc-------------------------------c-cc---
Confidence 99999999999887655433222 222222211 110000 0 00
Q ss_pred cccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheee
Q 008565 276 RTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQ 355 (561)
Q Consensus 276 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (561)
... ..+.+ .+-.++++.........+........+...+.++..
T Consensus 191 ~~~-------------------------------~~~~~----~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~- 234 (382)
T TIGR00902 191 ESQ-------------------------------GDSAF----IALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA- 234 (382)
T ss_pred ccc-------------------------------cchhH----HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000 00000 000011111111111112222222222222112211
Q ss_pred cccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008565 356 GSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDS 435 (561)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (561)
.+ ......+.......+..++..++.+|..+|.+.++.+.++.++..+....+.+.+
T Consensus 235 -------~g-~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--------------- 291 (382)
T TIGR00902 235 -------AG-ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--------------- 291 (382)
T ss_pred -------CC-CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh---------------
Confidence 11 0011122333445555555556666777788888888899999998887776542
Q ss_pred CCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHH-HHhhhhhhhhhHHHhhhcccccCCcccC
Q 008565 436 PKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYI-SIIGVGSFINTGVIEVVEAITHRSWLVD 514 (561)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~g~~lg~~v~~~i~~~~~~~~~~~ 514 (561)
+.+.++...++.+++.+...+....++.+. |++.|++++++++ ....+|..+++.+.|.+.|..
T Consensus 292 -------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~------- 356 (382)
T TIGR00902 292 -------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL------- 356 (382)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 456667778999999999999999999988 9999999999987 467899999999999998821
Q ss_pred CCccchhHHHHHHHHHHHHHHHHH
Q 008565 515 NLNRAHLDYFYWVLAGLSALNLCV 538 (561)
Q Consensus 515 ~~~~~~~~~~~~~~~~i~~~~~~~ 538 (561)
+ ...|+..++++++++++
T Consensus 357 ----g--~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 ----G--AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred ----c--HHHHHHHHHHHHHHHHH
Confidence 1 24577777777765543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=197.60 Aligned_cols=163 Identities=15% Similarity=0.228 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHH--HHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008565 47 QRFAYYGLAGNLIQY--LTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVS 124 (561)
Q Consensus 47 ~~~~~~~~~~~l~~y--l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~ 124 (561)
...++++...++|.+ +++++|.++.+.++..+++.++..++.+++|+++||+ |||+.+..+.++..++.+.+.+.
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~-- 91 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV-- 91 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh--
Confidence 334444444555544 5678999999999999999999999999999999997 99999999998888888888777
Q ss_pred cccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 008565 125 VIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWA 204 (561)
Q Consensus 125 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~ 204 (561)
++.+.+++.|++.|++.+...+...+++.|.+|+++ +.+.++..+....+|..++|.+++++.+..||+
T Consensus 92 -----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 160 (401)
T PRK11043 92 -----ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ 160 (401)
T ss_pred -----cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 688889999999999988777778889999999887 888889888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008565 205 VGFGVMAGALALALAIFLI 223 (561)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~ 223 (561)
..|++.++..++..+..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 161 AIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998887766665554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=196.20 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008565 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLL 119 (561)
Q Consensus 40 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~ 119 (561)
.+...+....+.....+.+|.+ .+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++.+.....++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHH
Confidence 3445555666666666667665 467999999999999999999999999999999997 99999999999988888888
Q ss_pred HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 120 SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~ 199 (561)
... ++...+++.|++.|++.+...+...+++.|.+|+++ |+++.+..+...++|..++|.+++.+.+
T Consensus 86 ~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 86 SLA-------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred HHh-------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777 577888899999999999888889999999999998 9999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHh
Q 008565 200 NVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 200 ~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
..||++.|++.++..++..+..+..
T Consensus 153 ~~g~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 153 KFPWQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999988877665555544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=211.34 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=129.4
Q ss_pred HHHHhcCCC---hhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHH
Q 008565 61 YLTNVLNEP---TATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFT 137 (561)
Q Consensus 61 yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (561)
.+.++++++ ..+.++..+++.++..++.++.|+++||+ |||++++++.++..++.++..++ ++++.+++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~ 185 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS-------PNYTVFLV 185 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc-------ccHHHHHH
Confidence 356788998 89999999999999999999999999997 99999999999999988888887 68999999
Q ss_pred HHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008565 138 ALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALA 217 (561)
Q Consensus 138 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~ 217 (561)
.|++.|++.+...+...+++.|.+|+++ |+.+.++...+..+|.+++|.++..+.+ ||+.|++.++..++.
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~ 256 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLF 256 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 9999999999999999999988776654 999998888766665
Q ss_pred HHHHHH
Q 008565 218 LAIFLI 223 (561)
Q Consensus 218 ~~~~~~ 223 (561)
.+..++
T Consensus 257 ~~~~~~ 262 (505)
T TIGR00898 257 FLLSWF 262 (505)
T ss_pred HHHHHh
Confidence 555433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=204.39 Aligned_cols=157 Identities=10% Similarity=0.067 Sum_probs=128.2
Q ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHH
Q 008565 59 IQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTA 138 (561)
Q Consensus 59 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (561)
..++++ .|.++++.+++.+.+.++..++.++.|+++||+ |||+.+..+.++.+++.+++.... ....+...+++.
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ 124 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVP---WATSSIAIMFVL 124 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccc---cccchHHHHHHH
Confidence 346665 599999999999999999999999999999997 999999999888888877765531 001356677788
Q ss_pred HHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhh-ccccchHHHHHHHHHHHHH
Q 008565 139 LYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQ-DNVGWAVGFGVMAGALALA 217 (561)
Q Consensus 139 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~-~~~g~~~~f~~~~~~~~i~ 217 (561)
|++.|++.+...+.....+.|.+|+++ |++++++++.+.++|..++|.+.+.+. +..+||..|++.++..++.
T Consensus 125 ~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~ 198 (438)
T TIGR00712 125 LFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIV 198 (438)
T ss_pred HHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999888888899999999998 999999999999999999988877644 4568999999988776665
Q ss_pred HHHHHHhcc
Q 008565 218 LAIFLIGIK 226 (561)
Q Consensus 218 ~~~~~~~~~ 226 (561)
.+..++..+
T Consensus 199 ~~~~~~~~~ 207 (438)
T TIGR00712 199 ALFAFAMMR 207 (438)
T ss_pred HHHHHHhcc
Confidence 544444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=197.06 Aligned_cols=383 Identities=12% Similarity=0.002 Sum_probs=231.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTN-VLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
|.++... ..+...+..+.+.+.+...+.+ ++|+|.+|.+++.+++.+...++.++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~-~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISV-SCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 4444444 4455555555555555555544 7999999999999999999999999999999998 99999999999988
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+.++...++.. +..+++..+++.|++.|++ +...+.....+++++|+++ |++++|+.....++|..+++.+
T Consensus 112 i~~~~~~~a~~--~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 112 IPCVWLGIAVQ--NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHHc--ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHH
Confidence 88887776410 1114788999999999998 6677889999999999999 9999999876667777665555
Q ss_pred HHHhh-----c-------------cccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccc
Q 008565 194 AIYLQ-----D-------------NVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVS 255 (561)
Q Consensus 194 ~g~l~-----~-------------~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (561)
...+. + ..+|+.++++..+..+++.+..++..++.++ ++....+...+
T Consensus 183 ~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~~~~~~v----------- 248 (462)
T PRK15034 183 APLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASIADQLPV----------- 248 (462)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCHHHHHHH-----------
Confidence 44322 2 2336666666666555555444443222111 01011110000
Q ss_pred cCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHH
Q 008565 256 ETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIW 335 (561)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (561)
. ++ ++......++
T Consensus 249 ------------------------------------------------------l------------k~-~~~Wllslly 261 (462)
T PRK15034 249 ------------------------------------------------------L------------QR-LHLWLLSLLY 261 (462)
T ss_pred ------------------------------------------------------h------------CC-CchhHHHHHH
Confidence 0 00 1111222223
Q ss_pred HHHHHHHHHHhhccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHH
Q 008565 336 LSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIV 415 (561)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~ 415 (561)
++....+..+..+.+.+... ... . ........+..+...+..|+-....+|.+..+.+.++.+.+.++...
T Consensus 262 ~~tFG~fvg~s~~lp~~~~~------~~~-~--~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~ 332 (462)
T PRK15034 262 LATFGSFIGFSAGFAMLAKT------QFP-D--VNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL 332 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HcC-h--HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333333333222222111 110 0 11111122334555566677655666677777777777666665433
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcch--------------------
Q 008565 416 AALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPE-------------------- 475 (561)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~-------------------- 475 (561)
...... . ....+.+.....++...++.++.....+-++.+..|+
T Consensus 333 ~~l~lp-------~---------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
T PRK15034 333 LFLTLP-------G---------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREA 396 (462)
T ss_pred HHHHhc-------c---------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence 222210 0 0012334444444444455555555566666666653
Q ss_pred -hHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 476 -AMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 476 -~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
+..|.++|+......+|+++-|.+.+...+.+ +++...|+.+.+..+++.++.|.+..|
T Consensus 397 ~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 397 VTETAAALGFISAIGAVGGFFIPQAFGMSLNMT-----------GSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 25788899999999999999998888887633 334556777788888888887777543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=201.75 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=130.5
Q ss_pred hcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHH
Q 008565 65 VLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAV 144 (561)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 144 (561)
+++++..+.|++.+.+.+++.++++++|+++||+ |||+++..+.++..++.+++.+... .+...+++.|+++|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHH
Confidence 6889999999999999999999999999999997 9999999999888888777655421 356778899999999
Q ss_pred hccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHH
Q 008565 145 GEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV-GWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 145 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~-g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
+.+...|....+++|++|+++ |++++++.+.+.++|..++|.+++++.+.. ||+..|++.++..++..+..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred hcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999884 9999999988766555554444
Q ss_pred hc
Q 008565 224 GI 225 (561)
Q Consensus 224 ~~ 225 (561)
..
T Consensus 218 ~~ 219 (465)
T TIGR00894 218 FP 219 (465)
T ss_pred Hh
Confidence 43
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=202.22 Aligned_cols=160 Identities=11% Similarity=0.094 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008565 50 AYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH 129 (561)
Q Consensus 50 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (561)
........+ .++++++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.+++.+.
T Consensus 10 ~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------- 80 (379)
T TIGR00881 10 VRKNFALAM-PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS------- 80 (379)
T ss_pred hHHhhhhhh-HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh-------
Confidence 333333444 467788999999999999999999999999999999997 99999999999999999888888
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH-HHHHHhhccccchHHHH
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV-LVAIYLQDNVGWAVGFG 208 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp-~l~g~l~~~~g~~~~f~ 208 (561)
++.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++| .+++.+.+..+|++.|+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 688899999999999999999999999999999988 99999999999999999999 57777777889999998
Q ss_pred HHHHHHHHHHHHHHHh
Q 008565 209 VMAGALALALAIFLIG 224 (561)
Q Consensus 209 ~~~~~~~i~~~~~~~~ 224 (561)
+.++..++..+..+..
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 155 VPGIIAIIVSLICFLL 170 (379)
T ss_pred HHHHHHHHHHHHHhee
Confidence 8776665544444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=194.61 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008565 50 AYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH 129 (561)
Q Consensus 50 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (561)
+.....+.+|.+.+ ++|+++.+.+++.+.+.++..++.+++|+++||+ |||+.+..+.++.+++..++.+.
T Consensus 6 ~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~------- 76 (377)
T PRK11102 6 AIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA------- 76 (377)
T ss_pred HHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-------
Confidence 34445677877764 6899999999999999999999999999999997 99999999999999998888887
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGV 209 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~ 209 (561)
++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+....+|..++|.+++++.+..||++.|++
T Consensus 77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 150 (377)
T PRK11102 77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV 150 (377)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 678889999999999999888999999999999988 99999999999999999999999999998999999988
Q ss_pred HHHHHHHHHHHHHHh
Q 008565 210 MAGALALALAIFLIG 224 (561)
Q Consensus 210 ~~~~~~i~~~~~~~~ 224 (561)
.++..++..+.....
T Consensus 151 ~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 151 LALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHh
Confidence 877666655544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=195.70 Aligned_cols=387 Identities=10% Similarity=-0.016 Sum_probs=230.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|.+|.+....++...++....+++|.|+++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+.++.++...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4577788888899999999999999999999999999999999999999999999999999997 999999887666655
Q ss_pred HHHHHHHhhh-cccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVS-VIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~-~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+......... +..........++.+++.+++.+...+....+..|..+ + ++..++......++|..+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~~~~g~~~g~~~ 152 (396)
T TIGR00882 81 LFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMFGCVGWALCASI 152 (396)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhhcccHHHHHHHH
Confidence 4433221100 00000122334566778888888777777777666422 2 3345677777889999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
++.+.+ .+|+..|++.++..++..+..+...++. ++++...+ ..+.
T Consensus 153 ~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------------------------~~~~- 198 (396)
T TIGR00882 153 AGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVAN----------------------------ALGA- 198 (396)
T ss_pred Hhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhhc----------------------------cccc-
Confidence 998876 5899999888776666554444332221 11000000 0000
Q ss_pred cccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHH-HHHHHHHHHhhccchh
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWL-SCLMFSCILVQLHTFF 352 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 352 (561)
++. ..+. .+.. +..++++ ........+ ....+.....+.+.++
T Consensus 199 ~~~-----------~~~~---~~~~---------------------~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~y~ 242 (396)
T TIGR00882 199 NAS-----------AFSL---KLAL---------------------ELFRQRK-FWMFVLYVVGVACVYDVFDQQFANFF 242 (396)
T ss_pred ccC-----------CCCH---HHHH---------------------HHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 0000 0001111 111111111 1111111111222222
Q ss_pred eeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008565 353 TKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGL 432 (561)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (561)
..... .... + ....+.......+...+......+..+|.++++.+.++..+.+++.......
T Consensus 243 ~~~~~--~~~~--~-~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------- 304 (396)
T TIGR00882 243 TSFFA--TPQQ--G-TRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------- 304 (396)
T ss_pred HHhcc--cccc--c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------------
Confidence 21110 0110 0 0011222333334444444444455555566666777777777766554432
Q ss_pred CCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHH-HHHHhhhhhhhhhHHHhhhcccccCCc
Q 008565 433 IDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAA-YISIIGVGSFINTGVIEVVEAITHRSW 511 (561)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~g~~lg~~v~~~i~~~~~~~~ 511 (561)
.+.+.+....++.+++..........+..+..|++.+++..+. ++....+|+.+++.+.+.+.+..
T Consensus 305 ---------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---- 371 (396)
T TIGR00882 305 ---------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---- 371 (396)
T ss_pred ---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc----
Confidence 2344455566777888766666677778888888888887766 67889999999999999998722
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHH
Q 008565 512 LVDNLNRAHLDYFYWVLAGLSALNLCVF 539 (561)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 539 (561)
++...|.+.+++.++..+..
T Consensus 372 --------G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 372 --------GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred --------ccHHHHHHHHHHHHHHHHHH
Confidence 33556776666666665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-20 Score=194.12 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHH-HHHH-----HHHHHhhhHHHHHhhhccCchHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDV-NNWV-----GISSIFPLLGAFVADSYLGRFNTILLSS 109 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~-~~~~-----~~~~~~~~~~G~lsDr~~Grk~~~~~~~ 109 (561)
....+++..+++.+-...+....| .+.++++.++.+.+... +... +...+++++.|+++||+ |||+.++.+.
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~ 93 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYAT-AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHH
Confidence 344455666676666665555554 66778898877754433 2222 22246789999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhcccccchhH--------HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHH
Q 008565 110 FIYFMGMVLLSLAVSVIPLHYRKA--------VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYL 181 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (561)
.+..++.+++.++ ++.. .+++.|+++|++.+...+....+++|++|+++ |++..++.+.
T Consensus 94 ~~~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~ 160 (434)
T PRK15075 94 SIMASGTLLIAFV-------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSA 160 (434)
T ss_pred HHHHHHHHHHHhC-------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHH
Confidence 9999999998887 3443 46889999999999988988999999999999 9999999888
Q ss_pred HHHHHHHHHHHHHHHhh--------ccccchHHHHHHHH
Q 008565 182 GIVFGASAAVLVAIYLQ--------DNVGWAVGFGVMAG 212 (561)
Q Consensus 182 ~~~lG~~igp~l~g~l~--------~~~g~~~~f~~~~~ 212 (561)
..++|..+++.+++.+. +.+|||+.|++..+
T Consensus 161 ~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 161 SQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 88888888887777652 46899999987543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=191.05 Aligned_cols=394 Identities=12% Similarity=0.073 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCc-hHHHHHHHHHHHHHHHH
Q 008565 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGR-FNTILLSSFIYFMGMVL 118 (561)
Q Consensus 40 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr-k~~~~~~~~~~~~~~~~ 118 (561)
+....++...++-...++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 44455566666666779999999999999999999999999999999999999999997 65 77888777777777777
Q ss_pred HHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCC--CCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 119 LSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERN--PKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
..+. ++.+.+++.|++.+++.+...+...++..+...++. ..+.-+|.+.+| .+|.++||.+++.
T Consensus 86 ~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~ 152 (418)
T TIGR00889 86 AAQV-------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSL 152 (418)
T ss_pred HHHh-------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHH
Confidence 6666 567778888888888776666655554332221000 000001444544 4788899999888
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccc
Q 008565 197 LQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKR 276 (561)
Q Consensus 197 l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (561)
+.....|. +|++.++..++..+.. +..++.++++.+++ .+.
T Consensus 153 l~~~~~~~-~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~--~~~----------------------------------- 193 (418)
T TIGR00889 153 LDIELSNI-QLYITAGSSALLGVFA-LTLPDIPVAKSTAK--MSI----------------------------------- 193 (418)
T ss_pred hcccchhH-HHHHHHHHHHHHHHHH-hcCCCCCCCccccc--cCH-----------------------------------
Confidence 84333343 4555555554444332 22232111000000 000
Q ss_pred ccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeec
Q 008565 277 TDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQG 356 (561)
Q Consensus 277 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (561)
+ +.. ..+.. +-.++++........++........+...+.+....
T Consensus 194 -~-----------~~~-~~~~~---------------------~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (418)
T TIGR00889 194 -K-----------VML-GLDAF---------------------ILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF- 238 (418)
T ss_pred -H-----------HHh-hhhHH---------------------HHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh-
Confidence 0 000 00000 000000111111111111111111111111111110
Q ss_pred ccccccCCCcee-eccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008565 357 STMRRSIGSNFQ-VPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDS 435 (561)
Q Consensus 357 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (561)
. .+.....++. ...+....+..+..++...+..+..+|.++++.+..+.++..+++..+.....
T Consensus 239 g-~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~-------------- 303 (418)
T TIGR00889 239 G-RNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP-------------- 303 (418)
T ss_pred c-ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc--------------
Confidence 0 0000000000 11123333344444444555555566677777888888888777655544210
Q ss_pred CCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHH-HHhhhhhhhhhHHHhhhcccccCCcccC
Q 008565 436 PKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYI-SIIGVGSFINTGVIEVVEAITHRSWLVD 514 (561)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~g~~lg~~v~~~i~~~~~~~~~~~ 514 (561)
.....+.+....++.+++.+...+....++.|..|++.|++++|+.+ ....+|..+||.+.|.+.+..+.
T Consensus 304 ----~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~----- 374 (418)
T TIGR00889 304 ----EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA----- 374 (418)
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-----
Confidence 01123345556778899988888998999999999999999999997 56889999999999999873310
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 515 NLNRAHLDYFYWVLAGLSALNLCVFIWIAKRF 546 (561)
Q Consensus 515 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 546 (561)
.+..+++..|.+.+++.+++++..+++.++.
T Consensus 375 -~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 375 -YGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred -ccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 0001245577777888888888777777654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-19 Score=189.14 Aligned_cols=152 Identities=18% Similarity=0.104 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
..++.+....+...+........+|.+ ++++|.|+.+.++..+.+.++..+++++.|+++||+ |||+++..++.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYAL 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 344445555555666666666666665 889999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
+.+++.... ..+++..+++.|+++|+|.|...+..++++.|..|+++ |...++..+....+|..+||.++
T Consensus 104 ~~~l~~~~~----~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 104 GAALFWPAA----EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 987763210 01578899999999999999999999999999766665 66678888999999999999888
Q ss_pred HHhh
Q 008565 195 IYLQ 198 (561)
Q Consensus 195 g~l~ 198 (561)
+.+.
T Consensus 174 ~~l~ 177 (438)
T PRK10133 174 QSLI 177 (438)
T ss_pred HHHH
Confidence 7643
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=192.95 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
..+..+...+......+...+++|.++++++|+|..+.+++.+.+.++..++.+++|+++||+ |||+.++++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 355666677777788888888898889999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhcccccc-hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHY-RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+++.+. + +.+.+++.|+++|++.+. .+...++++|.+|+++ |+++.++.....++|..+++.++
T Consensus 81 ~~~~~~~-------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 81 CLWAGLA-------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHHHHH-------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHH
Confidence 9888887 5 788899999999999664 4667889999999988 99999998888888888888777
Q ss_pred HHhhc----------cccchHHHHH
Q 008565 195 IYLQD----------NVGWAVGFGV 209 (561)
Q Consensus 195 g~l~~----------~~g~~~~f~~ 209 (561)
+.+.. ..+|++.|++
T Consensus 147 ~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 147 PPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHhcccccccccccchhHH
Confidence 66553 3479999844
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-20 Score=218.23 Aligned_cols=340 Identities=14% Similarity=0.066 Sum_probs=198.4
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHH---HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhcc
Q 008565 71 ATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSF---IYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEG 147 (561)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g 147 (561)
...++..+++.+...++++++|+++||+ |||+++..... +.++..+..... .+++.+++.|+++|++.+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~~~~l~gi~~a 123 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-------NSVPLLFAALFLMGIHSA 123 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999997 99997643222 222222222222 478899999999999999
Q ss_pred ccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhccc
Q 008565 148 GHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (561)
...|+..+++.|++|+++ |++++|+.+++.++|.++||.++|++.+..||++.|+..++..++++++.+.. ++
T Consensus 124 ~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 196 (1140)
T PRK06814 124 LFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFI-PK 196 (1140)
T ss_pred hhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC-CC
Confidence 999999999999999998 99999999999999999999999999999999988844444444443333322 21
Q ss_pred ccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccc
Q 008565 228 YRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLA 307 (561)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (561)
.+..++..+..... ..+..+.
T Consensus 197 ~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~---------- 217 (1140)
T PRK06814 197 TGNAAPDLKIDRNI-------------------------------------------------IRSTITL---------- 217 (1140)
T ss_pred CCCCCCCCeeccch-------------------------------------------------HHHHHHH----------
Confidence 11110000000000 0000000
Q ss_pred cccCCCCcccchhhhHHHHHHHH-HHHHHHHHHHHHHHHhhccchheeecccccccCCCceeeccccccchhhHHHHHHH
Q 008565 308 SRERNPWRLCSLNQVEEVKLVIR-LIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAV 386 (561)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (561)
+ +.....+.++. .+...+....+.......+.++.. .++ .-....+.+.....++.++..
T Consensus 218 ------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~g-~~~~~~g~~~~~~~~g~~ig~ 278 (1140)
T PRK06814 218 ------L-----KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE-------TLG-GDENVATLFLAVFSVGVAVGS 278 (1140)
T ss_pred ------H-----HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HcC-CchHHHHHHHHHHHHHHHHHH
Confidence 0 00000011111 111111122222222222222211 111 001112334445556666666
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhH
Q 008565 387 PVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQ 466 (561)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 466 (561)
.+..+..++....+.+..+.++..++.+.+.+... ........+..--......+.+.+.+..++.|++.+...+...
T Consensus 279 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (1140)
T PRK06814 279 FLASKLSEGRITLLYVPIGALLMGLFGLDLAFASS--SVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF 356 (1140)
T ss_pred HHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccc--ccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH
Confidence 66555543333333444444444443333332100 0000000000000000012345566777888999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 467 ELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 467 ~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
+++++.+|++.||+++|++++...++..+++.+.+.+.+
T Consensus 357 ~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 357 AALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988864
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=186.74 Aligned_cols=336 Identities=11% Similarity=-0.009 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCch----HHHHHHHHHHHHHHHHH
Q 008565 44 EMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRF----NTILLSSFIYFMGMVLL 119 (561)
Q Consensus 44 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk----~~~~~~~~~~~~~~~~~ 119 (561)
.++-.+++....+++|.|++ ++|.|..+.|++.+++.+...+++++.|+++||+ ||+ +.+.+...+ ......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~--~~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLL--FAVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHH--HHHHHH
Confidence 44455666778899999995 5799999999999999999999999999999997 984 332222111 111222
Q ss_pred HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 120 SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~ 199 (561)
... ++.+.+++.|++.+++.+...|...+++.+. +++ |++.++..+...++|..+||.+++++.+
T Consensus 89 ~~~-------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 89 FGA-------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred Hhc-------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 222 4688888899999999888888888887776 334 6777888888889999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccc
Q 008565 200 NVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDI 279 (561)
Q Consensus 200 ~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (561)
++||+..|++.++..++..+.. ...++ .+|+++ +.++ .++
T Consensus 154 ~~g~~~~f~~~~~~~~~~~~~~-~~~~~---~~~~~~--------------------------------~~~~---~~~- 193 (382)
T PRK11128 154 WFGEQAILWILTAGVASMLLGQ-LLRPT---IMPQGE--------------------------------SRQQ---ESA- 193 (382)
T ss_pred HcChhHHHHHHHHHHHHHHHHH-HccCC---CCCccc--------------------------------cccc---ccc-
Confidence 9999999987775444443322 22221 111100 0000 000
Q ss_pred cccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHhhccchheeeccc
Q 008565 280 GQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIP-IWLSCLMFSCILVQLHTFFTKQGST 358 (561)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (561)
..+.+ +...+.|....... ..+....+...+...+.+. .
T Consensus 194 ------------------------------~~~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---- 233 (382)
T PRK11128 194 ------------------------------GWPAW-----KALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-Q---- 233 (382)
T ss_pred ------------------------------ccchH-----HHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-H----
Confidence 00000 00001111111111 1111111111222111111 1
Q ss_pred ccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 008565 359 MRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKA 438 (561)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (561)
+... .....+.+..++.+..++...+.++..+|.+.++.+..+.++..++++.+...+
T Consensus 234 -~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~------------------ 291 (382)
T PRK11128 234 -AAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT------------------ 291 (382)
T ss_pred -HCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh------------------
Confidence 1111 011122333444555555555566777777777777788887777766555432
Q ss_pred cccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHH-HHhhhhhhhhhHHHhhhcc
Q 008565 439 IVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYI-SIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 439 ~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~g~~lg~~v~~~i~~ 505 (561)
+.+.+++..++.|++.+...+....+..+. |++.+++.+++++ ....+|..+|+.+.|.+.|
T Consensus 292 ----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 292 ----ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888999999889999988887 5555789999887 5567788999999999988
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-20 Score=216.09 Aligned_cols=360 Identities=12% Similarity=0.070 Sum_probs=218.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--hhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPT--ATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+.++.+++..++.++...+....+..++...++.+. ...+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 345555566666666655555556566666666544 3468889999999999999999999997 9999999888766
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
+++.++..+... .++++.+++.|++.|++.+...+...++++|++|+++ |++++++.+++.++|.++||.
T Consensus 88 ~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~ 157 (1146)
T PRK08633 88 VGLTLLIVLAYY----LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTA 157 (1146)
T ss_pred HHHHHHHHHHHH----HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHH
Confidence 655544433210 1468889999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHhhcc--------cc-chHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCc
Q 008565 193 VAIYLQDN--------VG-WAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRG 263 (561)
Q Consensus 193 l~g~l~~~--------~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (561)
+++++.+. ++ |.+.+.+..+..++..+.+.+..++.+...+...
T Consensus 158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 210 (1146)
T PRK08633 158 LFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF--------------------------- 210 (1146)
T ss_pred HHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc---------------------------
Confidence 99998765 22 3333333332222222222222222111100000
Q ss_pred cccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHH-HHHHHHHHHHH
Q 008565 264 IYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRL-IPIWLSCLMFS 342 (561)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 342 (561)
+. .. .....+..+. + +.....+.+... +...+.....+
T Consensus 211 -----~~-----~~----------~~~~~~~~~~----------------~-----~~l~~~~~~~~~~~~~~~~~~~~~ 249 (1146)
T PRK08633 211 -----DK-----KK----------YLFPKLLWRN----------------L-----KLLRSDRVLWLAIIGLSYFWFISQ 249 (1146)
T ss_pred -----cc-----cc----------cccHHHHHHH----------------H-----HHHhcCcHHHHHHHHHHHHHHHHH
Confidence 00 00 0000000000 0 000000111111 11111111111
Q ss_pred HHHhhccchheeecccccccCCCceee--ccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008565 343 CILVQLHTFFTKQGSTMRRSIGSNFQV--PPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVE 420 (561)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~ 420 (561)
.....++.++.. .+ +.+. ..+.+.....++.++...+..+..++....+.+.++.++..++++.+.+.
T Consensus 250 ~~~~~~~~~~~~-------~~--g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~- 319 (1146)
T PRK08633 250 LAQANFPAYAKE-------VL--GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA- 319 (1146)
T ss_pred HHHHhhHHHHHH-------Hh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-
Confidence 111111111111 11 1111 12334444555555566666555555555556667777776666655543
Q ss_pred HHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHH
Q 008565 421 AKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVI 500 (561)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~ 500 (561)
.+.+.+++..++.|++.+...+...+++.+..|++.||+++|++++...+|..+++.+.
T Consensus 320 ---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~ 378 (1146)
T PRK08633 320 ---------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT 378 (1146)
T ss_pred ---------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 14455666778888998888899999999999999999999999999999998887776
Q ss_pred hhhc
Q 008565 501 EVVE 504 (561)
Q Consensus 501 ~~i~ 504 (561)
+.+.
T Consensus 379 ~~l~ 382 (1146)
T PRK08633 379 TLFS 382 (1146)
T ss_pred HHHH
Confidence 6553
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-20 Score=181.27 Aligned_cols=391 Identities=14% Similarity=0.077 Sum_probs=268.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
.++|+++.- ...+..++.-+.+.+.+..++.+++|+|+.|.+++.++..+...+..++.|.+.||+ |.|+...++.++
T Consensus 11 ~~~~~L~~S-~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l 88 (417)
T COG2223 11 IARRNLWLS-TLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLL 88 (417)
T ss_pred chhHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHH
Confidence 455656544 345555666667778888888999999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.++-++...++ .++.+.+.+++.+++.|++. +..+...+++++.||+++ +|.++|+.. +.|+|..+..
T Consensus 89 ~~IP~~~~~~a----~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q 156 (417)
T COG2223 89 LLIPCLGLAFA----VTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQ 156 (417)
T ss_pred HHHHHHHHHHH----ccCCchHHHHHHHHHHhccc-ceehcccccccccCChhh------hhHHHHHhc-cccccHHHHH
Confidence 88888888887 33345568889999999984 467888999999999999 999999998 9999999999
Q ss_pred HHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCC
Q 008565 192 LVAIYLQDNVG---WAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGH 268 (561)
Q Consensus 192 ~l~g~l~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (561)
.++..+....| |+.+..+..+..++..+..++..++.++.++..++...
T Consensus 157 ~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------------------- 208 (417)
T COG2223 157 LVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------------------- 208 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch----------------------------
Confidence 99999888888 88888888877777777666655443332111110000
Q ss_pred CCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 269 ELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQL 348 (561)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (561)
+ ..+.+...++...+..++..+..-++.+..+
T Consensus 209 ---------------------------~---------------------~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~ 240 (417)
T COG2223 209 ---------------------------A---------------------QLKAVFSNKDTWLLSLLYFATFGGFVGFSAY 240 (417)
T ss_pred ---------------------------h---------------------HHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011111233333444444444444444333
Q ss_pred cchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 349 HTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTAR 428 (561)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~ 428 (561)
.+.+.. .+++ --....+.+....++...+.-|+=....+|....+.....+..++++.....+...
T Consensus 241 l~~~~~------~~fg-~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~------- 306 (417)
T COG2223 241 LPMYLV------TQFG-LSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT------- 306 (417)
T ss_pred HHHHHH------HhcC-CChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc-------
Confidence 332222 2221 01122234444555555666666555677788878888888888887776665320
Q ss_pred hcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhccccc
Q 008565 429 ENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITH 508 (561)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~ 508 (561)
.++ ...+.+..+..++..++..+......+.++..+.|+ +-|.+.|+...++.+|++.-|...+...+.+
T Consensus 307 ~~~--------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t- 376 (417)
T COG2223 307 GFG--------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT- 376 (417)
T ss_pred ccc--------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc-
Confidence 000 012333344444444555555555566666667765 6789999999999999999999999998854
Q ss_pred CCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 509 RSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRF 546 (561)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 546 (561)
+.+...|+++..+.+++.+..+....++
T Consensus 377 ----------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 377 ----------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345678888999999998887776554
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=196.64 Aligned_cols=362 Identities=15% Similarity=0.197 Sum_probs=233.8
Q ss_pred hcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHH
Q 008565 65 VLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAV 144 (561)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 144 (561)
+++++..+.+++.+.+..++.++++++|+++||+ |-|+++..+.++.++++++.+.++. .+.+.+++.|+++|+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-----~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-----IGFYLLLVLRFLQGL 140 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHHHhHH
Confidence 5789999999999999999999999999999998 9999999999999999999988852 345578999999999
Q ss_pred hccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHH
Q 008565 145 GEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN-VGWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 145 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~-~g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
+.|...|+...+.+++.|+++ |++..++...+..+|.+++-+++|++.+. +||+++|++.++..++..+++++
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999998 99999999999887777666666
Q ss_pred hcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcc
Q 008565 224 GIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDE 303 (561)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 303 (561)
+..+.+.++|.-+. . |.+.++..+....
T Consensus 215 ~~~d~P~~h~~is~-~---------------------------------------------------El~~I~~~k~~~~ 242 (466)
T KOG2532|consen 215 FYSDSPSKHPNISE-K---------------------------------------------------ELKYIEKGKSEAH 242 (466)
T ss_pred HhcCCcccCCCCCH-H---------------------------------------------------HHHHHHhcccccc
Confidence 54432322221110 0 0111111100000
Q ss_pred cccccccCCCCcccchhhhHHHHHHHHHHHHHH-------HHHHHHHHHhhccchheeecccccccCCCceee-cccccc
Q 008565 304 IDLASRERNPWRLCSLNQVEEVKLVIRLIPIWL-------SCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQV-PPASLQ 375 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 375 (561)
.. .....||+ .+++..+++. ....++....+.++++.. -+ ++++ .++.+.
T Consensus 243 ~~--~~~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-------VL--~f~v~~~G~~s 300 (466)
T KOG2532|consen 243 VK--KKPPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKE-------VL--GFDVRETGFLS 300 (466)
T ss_pred cC--CCCCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------Hh--CCChhhhhHHH
Confidence 00 00234553 3333222222 222333333333333332 11 2222 344555
Q ss_pred chhhHHHHHHHHH----hhcCCC---CCCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhh
Q 008565 376 SLVGLSILVAVPV----ITGHRS---GITMLQRIG--IGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWW 446 (561)
Q Consensus 376 ~~~~~~~~~~~~~----~~~~~~---~~~~~~~i~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (561)
.++.+...+...+ -++... .....+++. ++....+++++++++.. ..+. +
T Consensus 301 alP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~--------------------~~~~-~ 359 (466)
T KOG2532|consen 301 ALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS--------------------DEHR-L 359 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC--------------------CCcc-h
Confidence 5555555544333 333211 122233343 45555555555555431 1111 1
Q ss_pred HHhHHHHHHHhhhhhhhhhHHHHhhh-cchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHH
Q 008565 447 LLPQYLLVSICDVFGIVGLQELFYDQ-MPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFY 525 (561)
Q Consensus 447 ~~~~~~l~g~g~~~~~~~~~~~~~~~-~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 525 (561)
.....+..+.+........+...... + ++.-+..+|+.+....++.+++|.+++.+.... +.......|
T Consensus 360 ~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~---------t~~eW~~VF 429 (466)
T KOG2532|consen 360 LAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDN---------TREEWRIVF 429 (466)
T ss_pred HHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCC---------CHHHHHHHH
Confidence 22222222333333333333333333 5 467899999999999999999999999987411 112336789
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008565 526 WVLAGLSALNLCVFIWIA 543 (561)
Q Consensus 526 ~~~~~i~~~~~~~~~~~~ 543 (561)
++.+++.+++.+++.++.
T Consensus 430 ~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 430 LIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHhchheeEee
Confidence 999999999887776664
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=192.67 Aligned_cols=393 Identities=14% Similarity=0.099 Sum_probs=232.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhh
Q 008565 74 AQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCV 153 (561)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~ 153 (561)
+.+++++.++.++|+.++|+++||+ |||+.++++.++..++.++..++.. .++..+++++|++.|+..|......
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~----~~~~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKS----APSFEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 6778889999999999999999998 9999999999888888777766621 2678899999999999999999999
Q ss_pred hhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH--HhhccccchHHHHHHHHHHHHHHHHHHHhccccccc
Q 008565 154 QTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI--YLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQ 231 (561)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g--~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 231 (561)
+.++.|..|++. ||..-...+++.++|..++..++. .+.+.-.|++.+.+..+.+++.++.+.++.
T Consensus 138 pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P------ 205 (485)
T KOG0569|consen 138 PMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP------ 205 (485)
T ss_pred HHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC------
Confidence 999999999999 999999999999999999966653 233445598888887777666666554432
Q ss_pred CCCCCchhHHHHHHHHHHhhcccccCCCCCCccc-cCCCCCCCccccc-ccccccccccccchhhhhhhhhhcccccccc
Q 008565 232 APVGSPFTTVAQVFVATARKWRVSETHGGGRGIY-HGHELDDDDKRTD-IGQSKRTIARTNQLRFLDKAMIIDEIDLASR 309 (561)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (561)
|+|++++- ++++.++.++.+. -| +++. ..+.++..+..+...... .
T Consensus 206 --------------------------ESPk~Ll~~k~~~~~A~~sl~~y~G--~~~~-~~~~e~~~~e~~~~~~~~---~ 253 (485)
T KOG0569|consen 206 --------------------------ESPKYLLIKKGDEEEARKALKFYRG--KEDV-EAEIEEMLREIEEEELEK---K 253 (485)
T ss_pred --------------------------CCcchHHHHcCCHHHHHHHHHHHhC--CCcc-hhHHHHHHHHHHHhcccc---c
Confidence 22222221 1111100000000 00 0000 000000000000000000 0
Q ss_pred cCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceeeccc-----cccchhhHHHHH
Q 008565 310 ERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPA-----SLQSLVGLSILV 384 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 384 (561)
+...++...+++ ..|+.+...+.+.+++. +....... .+...+-... |++...+ ....++....++
T Consensus 254 ~~~sl~~~~~~~-~lR~~~~i~~~v~~~qq-----~sGi~ai~-~Yst~i~~~a--G~~~~~a~~an~~~g~v~~~~t~~ 324 (485)
T KOG0569|consen 254 KQISLRQLLKNP-TLRRPLLIGIVVSFAQQ-----FSGINAIF-FYSTSIFKTA--GFTPEEAQYANLGIGIVNLLSTLV 324 (485)
T ss_pred cCCcHHHHhcCc-chhHHHHHHHHHHHHHH-----hcCcceeH-HHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 001111000011 11122111111111111 11111111 1111111111 2222222 222333344444
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhh-hh
Q 008565 385 AVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFG-IV 463 (561)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~-~~ 463 (561)
...+++|.+| ++.+++++.++.+..+.+.......... .++-.+..+...+++.+..... .|
T Consensus 325 ~~~lid~~gR----RpLll~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~y~~i~~~~~~~~~f~~G~gp 387 (485)
T KOG0569|consen 325 SPFLIDRLGR----RPLLLISLSLMAVALLLMSIALFLSNSF-------------GSWLSYLCIAAIFLFIISFAIGPGP 387 (485)
T ss_pred HHHHHHhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHhhhcCCCc
Confidence 4444555543 4567777777766666655543211000 0011122344445555555555 58
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008565 464 GLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIA 543 (561)
Q Consensus 464 ~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 543 (561)
..+-+..|.+|++.|..++++...++++.+++-....+.+.+.. + ++.|..+.+.+++..+..+...
T Consensus 388 i~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-----------g--~~~filF~i~~~~~~i~~~~~l 454 (485)
T KOG0569|consen 388 IPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-----------G--PYVFILFVIPLAIFLIYLYRYL 454 (485)
T ss_pred hhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------c--chhhHHHHHHHHHHHHHHHHhC
Confidence 88899999999999999999999999999999999999887732 2 2578888999999999999999
Q ss_pred hhccccccccc
Q 008565 544 KRFVYKKVLED 554 (561)
Q Consensus 544 ~~~~~~~~~~~ 554 (561)
+|+|+|+..|.
T Consensus 455 PETkgr~~~eI 465 (485)
T KOG0569|consen 455 PETKGRTPYEI 465 (485)
T ss_pred cccCCCCHHHH
Confidence 99999887654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-18 Score=187.18 Aligned_cols=175 Identities=15% Similarity=0.195 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc----cCchHH-HHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY----LGRFNT-ILLSS 109 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~----~Grk~~-~~~~~ 109 (561)
|+.+.++...+.+....+...+.+|.|+++ .|.|.++.+.. +...... ++.+++|+++||+ +||||. ++++.
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~ 88 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQ 88 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHH
Confidence 456667777788888888888999999865 59999999886 3333332 6899999999994 188886 55666
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 110 FIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
+..+++...+.+. ....+.+.+.+.+++.+++.+...+...++..|++|+++ |+++.++...+..+|..+
T Consensus 89 i~~~~~~~~~a~~----~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~ll 158 (491)
T PRK11010 89 LLLLVAIAAMGFL----EPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLV 158 (491)
T ss_pred HHHHHHHHHHHHc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHH
Confidence 6666666666664 122467778888999999988888999999999999988 999999999999999999
Q ss_pred HHHHHHHhhc-cccchHHHHHHHHHHHHHHHHHH
Q 008565 190 AVLVAIYLQD-NVGWAVGFGVMAGALALALAIFL 222 (561)
Q Consensus 190 gp~l~g~l~~-~~g~~~~f~~~~~~~~i~~~~~~ 222 (561)
++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 159 g~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 159 SGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 57999999998877666544433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=190.78 Aligned_cols=354 Identities=13% Similarity=0.120 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc---cCchH-HHHHHHHHHHHHHHHH
Q 008565 44 EMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY---LGRFN-TILLSSFIYFMGMVLL 119 (561)
Q Consensus 44 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grk~-~~~~~~~~~~~~~~~~ 119 (561)
.+..++....+.++++.|+.+++|+++.++|.+.++..+...+..|+.|+++||. +|||| .++++....+++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 3445566667778899999999999999999999999999999999999999983 37755 5666777777777766
Q ss_pred HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcc-cCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 120 SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFD-ERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQ 198 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~ 198 (561)
..... .........+++.+++.+++.+....+..++.+|..+ +++ |++..++.+...++|..+++.+.+.+.
T Consensus 88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~~~g~~l~~~~~~~l~ 160 (437)
T TIGR00792 88 FTTPD-FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGATLGGLLVAVIVLPLV 160 (437)
T ss_pred HhCCC-CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65410 0000123455666777888888777777888899874 455 999999988888888887776665543
Q ss_pred -------ccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCC
Q 008565 199 -------DNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELD 271 (561)
Q Consensus 199 -------~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (561)
+..||+..+.+.++..++..+..+...++.+++.+.+ .+
T Consensus 161 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~----------------------------------~~ 206 (437)
T TIGR00792 161 SYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN----------------------------------IE 206 (437)
T ss_pred HHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc----------------------------------cc
Confidence 2467998888777766655544444333211100000 00
Q ss_pred CCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Q 008565 272 DDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPI-WLSCLMFSCILVQLHT 350 (561)
Q Consensus 272 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 350 (561)
+.....+..+ ...++ |........ .+....+.. ......
T Consensus 207 ------------------~~~~~~~~~~--------------------~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 246 (437)
T TIGR00792 207 ------------------KKLSLKQIFK--------------------ALFKN-DQLLILCLAYLFYNLAFNI-KNGVQV 246 (437)
T ss_pred ------------------cCCCHHHHHH--------------------HHhCC-HHHHHHHHHHHHHHHHHHH-Hcchhh
Confidence 0000000000 00011 111111111 111111111 111112
Q ss_pred hheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008565 351 FFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTAREN 430 (561)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (561)
++..+.. . . ....+.+..+..+..++..++..+..+|.++++.+..+..+..++++.+.+..
T Consensus 247 ~~~~~~~--~-~-----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------- 308 (437)
T TIGR00792 247 YYFTYVL--G-D-----PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG---------- 308 (437)
T ss_pred eeEeeec--C-C-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc----------
Confidence 2221111 0 0 01112233344555666666666655566667777778877777766654421
Q ss_pred CCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcc-------hhHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 008565 431 GLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMP-------EAMRSIGAAAYISIIGVGSFINTGVIEVV 503 (561)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~~g~~~~~~~~g~~lg~~v~~~i 503 (561)
.+.+......++.+++.+...+..+++..|..| ++.+|.+.|++++...+|..+++.+.+.+
T Consensus 309 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 309 -----------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444556677888888888888888888765 56689999999999999999999999999
Q ss_pred cccc
Q 008565 504 EAIT 507 (561)
Q Consensus 504 ~~~~ 507 (561)
.+..
T Consensus 378 l~~~ 381 (437)
T TIGR00792 378 LGII 381 (437)
T ss_pred HHHc
Confidence 8754
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=192.31 Aligned_cols=399 Identities=13% Similarity=0.108 Sum_probs=233.0
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccch
Q 008565 72 TAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKP 151 (561)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~ 151 (561)
+.+++.+...++..++.+++|+++|++ |||++++++.+.+.++.+++.++ .+...++++|++.|+|.|+...
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-------~~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-------PSWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhccchhhhhh
Confidence 448999999999999999999999997 99999999999999999999999 7999999999999999999999
Q ss_pred hhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHHHhccccc
Q 008565 152 CVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN--VGWAVGFGVMAGALALALAIFLIGIKRYR 229 (561)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~--~g~~~~f~~~~~~~~i~~~~~~~~~~~~~ 229 (561)
..+.+++|..|++. |+...+..+...++|..++.. .++..++ .+||..+.+..+..++..+.+ +..|+-+
T Consensus 162 ~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~-~~~pesp 233 (513)
T KOG0254|consen 162 LAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC-INYGTSKVYAGWRIPLGLALIPAVILALGM-LFLPESP 233 (513)
T ss_pred cchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHHH-HhCCCCh
Confidence 99999999999999 999999999999999999954 4444443 489988888777766666663 3333211
Q ss_pred ccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccc
Q 008565 230 KQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASR 309 (561)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (561)
..--+..+..+..+.+......+ ++ +...+...+........... .
T Consensus 234 ~~L~~~g~~~~a~~~l~~l~g~~----~~----------------------------~~~~~~~~~~~~~~~~~~~~--~ 279 (513)
T KOG0254|consen 234 RWLIEKGRLEEAKRSLKRLRGLS----PE----------------------------DVEVELELLKIKLLVEAEVA--E 279 (513)
T ss_pred HHHHHcCChHHHHHHHHHHhCCC----Cc----------------------------chHHHHHHHHHHHHHhhhcc--c
Confidence 10000111111111111110000 00 00000000000000000000 0
Q ss_pred cCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceeec----cccccchhhHHHHHH
Q 008565 310 ERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVP----PASLQSLVGLSILVA 385 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 385 (561)
....|+.... + ..+|+......+..++. +.... ....+....-... +...+ .-....++.++.++.
T Consensus 280 ~~~~~~~l~~-~-~~~~~~~i~~~l~~fqq-----~tG~~-~~~~Y~~~if~~~--g~~~~~~~~~~~~~~v~~~~t~~~ 349 (513)
T KOG0254|consen 280 GKASWGELFS-P-KVRKRLIIGLLLQLFQQ-----LTGIN-YVFYYSTTIFKSA--GLKSDTFLASIILGVVNFLGTLVA 349 (513)
T ss_pred ccccHHHhcC-c-chHHHHHHHHHHHHHHH-----HhCCc-eEEeehHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHH
Confidence 0001111111 0 11122211111111111 11111 1111111111111 11111 112223333443444
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHH-HHhhhhhhhh
Q 008565 386 VPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLV-SICDVFGIVG 464 (561)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-g~g~~~~~~~ 464 (561)
.-+++|. ++++.++.|...+.+++++++.......... .......+..+...++. ........|.
T Consensus 350 ~~lvd~~----gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~f~~g~g~v 415 (513)
T KOG0254|consen 350 TYLVDRF----GRRKLLLFGAAGMSICLVILAVVGVFALYYP----------NSSKGAGWLAIVFLCLFIFSFAIGWGPV 415 (513)
T ss_pred HHHHHHh----ccHHHHHHhHHHHHHHHHHHHHHHHHhccCC----------CcccchhHHHHHHHHHHHHHHhcccccc
Confidence 3334444 5567788888888888887776532110000 00111223333333333 3333334577
Q ss_pred hHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHH-HHHHHH
Q 008565 465 LQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLC-VFIWIA 543 (561)
Q Consensus 465 ~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~ 543 (561)
.+.+..|..|.+.|+++.++...++++.+++-........+ +. .....|+.+++++.+... +.+++.
T Consensus 416 ~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~-----~~-------~~~~~f~~f~~~~~~~~~~fv~~~~ 483 (513)
T KOG0254|consen 416 PWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE-----AL-------GIGGTFGYFGGICLLSLIIFVFFFV 483 (513)
T ss_pred hhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hc-------cccchHHHHHHHHHHHHHHHheEEc
Confidence 77888999999999999999999999999887776666654 11 012456667777777777 788889
Q ss_pred hhccccccccccc
Q 008565 544 KRFVYKKVLEDES 556 (561)
Q Consensus 544 ~~~~~~~~~~~~~ 556 (561)
+|+++++.+|.++
T Consensus 484 pETkg~sleei~~ 496 (513)
T KOG0254|consen 484 PETKGLTLEEINE 496 (513)
T ss_pred ccCCCCcHHHHHH
Confidence 9999999887654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-19 Score=182.89 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=113.3
Q ss_pred HHHHHHHhcC--CChhhhhHHHHHH-----HHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008565 58 LIQYLTNVLN--EPTATAAQDVNNW-----VGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHY 130 (561)
Q Consensus 58 l~~yl~~~lg--~s~~~~~~~~~~~-----~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (561)
...++.++.. .++++.+...+.. .+...++.++.|+++||+ |||+++..+.++..++.+++.+. +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-------~ 86 (394)
T TIGR00883 15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLL-------P 86 (394)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhC-------C
Confidence 3344444443 3445555544432 233346889999999997 99999999999999998888877 3
Q ss_pred hh--------HHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhh----
Q 008565 131 RK--------AVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQ---- 198 (561)
Q Consensus 131 ~~--------~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~---- 198 (561)
+. ..+++.|+++|++.+...+...+++.|.+|+++ |++..+..+.+..+|..+++.+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 87 SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33 357889999999999999999999999999998 999999999999999999998876653
Q ss_pred ----ccccchHHHHHHHHHHHHHH
Q 008565 199 ----DNVGWAVGFGVMAGALALAL 218 (561)
Q Consensus 199 ----~~~g~~~~f~~~~~~~~i~~ 218 (561)
+.++|++.|++.++..+++.
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 161 DDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHhhccchHHHHHHHHHHHHHHH
Confidence 35789999987766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-17 Score=174.30 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc----cCchH-HHHHHHHHHHHH
Q 008565 41 IMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY----LGRFN-TILLSSFIYFMG 115 (561)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~----~Grk~-~~~~~~~~~~~~ 115 (561)
+...+.+...+.....-+|.|+++ .|+|.++.|++..+... .+..+++|+++||+ +|||| .+.++.+..+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 345566777777788899999986 59999999999776665 68899999999995 16765 677777777777
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
...+.+. ....+.+.+++..++.++..+...+...+++.|++|+++ |+++.++..++..+|..+++.+++
T Consensus 82 ~~~l~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~ 151 (402)
T PRK11902 82 IAAMAFC----PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLAL 151 (402)
T ss_pred HHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHH
Confidence 7666655 112346666666667788888888999999999999998 999999999999999999999999
Q ss_pred Hhhcc-ccchHHHHHHHHHHHHHHH
Q 008565 196 YLQDN-VGWAVGFGVMAGALALALA 219 (561)
Q Consensus 196 ~l~~~-~g~~~~f~~~~~~~~i~~~ 219 (561)
++.+. .||+..|++.++..++..+
T Consensus 152 ~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 152 WLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHhcccCHHHHHHHHHHHHHHHHH
Confidence 98885 5999999988876655444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=176.84 Aligned_cols=145 Identities=14% Similarity=0.177 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhH
Q 008565 54 LAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKA 133 (561)
Q Consensus 54 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (561)
..+.+|. +.+++|.+.++.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.. .. ++.+
T Consensus 19 ~~~~lp~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-------~~~~ 88 (355)
T TIGR00896 19 VGPLLPQ-IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-------PGTA 88 (355)
T ss_pred CcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------ccHH
Confidence 3455554 5668999999999999999999999999999999997 99999999988877777666 44 4778
Q ss_pred HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHH
Q 008565 134 VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV--GWAVGFGVMA 211 (561)
Q Consensus 134 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~--g~~~~f~~~~ 211 (561)
.+++.|++.|++.+...+..+.++.|.+| ++ |++++++.+.+.++|..+++.+++.+.+.. +|+..|.+.+
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~ 161 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWA 161 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 88899999999998877788888888886 46 999999999999999999999999887664 3888887665
Q ss_pred HHHH
Q 008565 212 GALA 215 (561)
Q Consensus 212 ~~~~ 215 (561)
+..+
T Consensus 162 ~~~~ 165 (355)
T TIGR00896 162 LPAL 165 (355)
T ss_pred HHHH
Confidence 5433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=172.50 Aligned_cols=171 Identities=17% Similarity=0.115 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
++.+....+...+......+.+| .+++++|.+..+.+++.+.+.++..++.++.|++.||+ |||+++.+++.+++++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~-~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVP-QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 33444444444444433345554 55889999999999999999999999999999999997 99999999999999988
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
+++.... ..++++.+++.|++.|+|.|...+...+++.+..|+++ |++..++.+...++|..+||.+++.
T Consensus 83 ~l~~~~~----~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 83 FLFWPAA----EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred HHHHHHH----hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765441 11467888999999999999999999999999999888 8899999999999999999999887
Q ss_pred hhcc--------------------------ccchHHHHHHHHHHHHHHH
Q 008565 197 LQDN--------------------------VGWAVGFGVMAGALALALA 219 (561)
Q Consensus 197 l~~~--------------------------~g~~~~f~~~~~~~~i~~~ 219 (561)
+... .+||.+|++.++..++..+
T Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 153 LILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred HHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7422 3599999877765554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-18 Score=164.87 Aligned_cols=343 Identities=15% Similarity=0.107 Sum_probs=204.0
Q ss_pred HhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHH
Q 008565 64 NVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILA 143 (561)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 143 (561)
+..+.+...+|.+-+.+++.+++.++..|.+|||+ |||++++.|++..++...+.+.+ .++..+.+.|++.|
T Consensus 61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-------~~F~afv~aR~l~G 132 (451)
T KOG2615|consen 61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-------RNFAAFVLARFLGG 132 (451)
T ss_pred CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhh
Confidence 33445667789999999999999999999999998 99999999999999987777777 67767777799999
Q ss_pred HhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc---cccchHHHHHHH-HHHHHH--
Q 008565 144 VGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD---NVGWAVGFGVMA-GALALA-- 217 (561)
Q Consensus 144 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~---~~g~~~~f~~~~-~~~~i~-- 217 (561)
+..|- .....++++|.+++++ |+.+++..+.+..+|.++||.++|++.. ..| .++|.... ...+++
T Consensus 133 i~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~ 204 (451)
T KOG2615|consen 133 IFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAG 204 (451)
T ss_pred hccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHH
Confidence 99886 4777899999999998 9999999999999999999999999987 233 12232221 111222
Q ss_pred -HHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhh
Q 008565 218 -LAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLD 296 (561)
Q Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 296 (561)
...+.++.+|.-..+... .++.. +. +..+++ . .....++.+
T Consensus 205 ~v~~~~~~lpETL~~rk~~---------------------~~~~~--~~---~~~~~~-~-----------~~~~~~~~~ 246 (451)
T KOG2615|consen 205 DVTFFPWFLPETLPLRKRN---------------------DEHST--LQ---EAADDR-L-----------ALLKFARIF 246 (451)
T ss_pred HHHHHHHhCCccccchhhc---------------------ccccc--hh---hhhhhh-h-----------hhcchhhhh
Confidence 222333333321111000 00000 00 000000 0 000000111
Q ss_pred hhhhhcccccccccCCCCcccchhhhHHH-HHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceeecccccc
Q 008565 297 KAMIIDEIDLASRERNPWRLCSLNQVEEV-KLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQ 375 (561)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (561)
..... ...| ..++ ..+.+.....+.....+..+..+...+.. ..++ .-....+.+.
T Consensus 247 ~v~~l--------rn~p--------~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~------~rfg-~ss~~~G~vl 303 (451)
T KOG2615|consen 247 KVAAL--------RNPP--------LLDFISVLRIFGLHYFLYLELFSGLENTVLFLTH------GRFG-YSSMQQGKVL 303 (451)
T ss_pred hhhhh--------cCcc--------ccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc------CccC-CChhhheeee
Confidence 10000 0001 0110 11111111111111112222222222211 1111 1112233334
Q ss_pred chhhHHHHHHHHHhhcCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHH
Q 008565 376 SLVGLSILVAVPVITGHRSGIT--MLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLL 453 (561)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 453 (561)
...++.+.+.+..+.++..+.. ........+.++.-.++..... -...++.....+
T Consensus 304 ~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~----------------------~~~~~l~~~s~l 361 (451)
T KOG2615|consen 304 STTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA----------------------RTPVVLYLGSTL 361 (451)
T ss_pred ehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc----------------------ccchhhhHHHHH
Confidence 4455555555555444433222 2223334444444444444332 123456777788
Q ss_pred HHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 454 VSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 454 ~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
..+......|....++....|.+.||+..|+..+...++.++||.+.|.+..
T Consensus 362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 8999999999999999999999999999999999999999999999999987
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-20 Score=184.00 Aligned_cols=180 Identities=16% Similarity=0.236 Sum_probs=163.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
..+.+..++++++++++--|.+...+ .-+++.+|++++..|++...+.+...++.|++|+++||+ .||+++.+|..++
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW 108 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIW 108 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHH
Confidence 33456677888999999999887755 456788999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++.+...++ .+++++.+.|.+.|+|.+.+.|.++++++|.||+++ |++.++++|++..+|.++|.+
T Consensus 109 ~~Av~~~~fs-------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~v 175 (493)
T KOG1330|consen 109 TLAVFASGFS-------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYV 175 (493)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEE
Confidence 9999999999 689999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhhcccc-chHHHHHHHHHHHHHHHHHHHhccc
Q 008565 193 VAIYLQDNVG-WAVGFGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 193 l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (561)
.+..+.+..+ ||+.|...+++.++..++.+++.++
T Consensus 176 vgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 176 VGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred eeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999888766 9999999999888877777766554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=171.92 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc----cCchHHH-HHHHHHHHHHHHHHHHhhhccccc
Q 008565 55 AGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY----LGRFNTI-LLSSFIYFMGMVLLSLAVSVIPLH 129 (561)
Q Consensus 55 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~----~Grk~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 129 (561)
...+|.++ +++|+|.++.++.... .+...+ .+++|+++||+ +||||.+ +.+.+..++....+.+. ...
T Consensus 8 ~~~~~~~~-~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~----~~~ 80 (356)
T TIGR00901 8 GNTLPYWL-RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL----VPS 80 (356)
T ss_pred HhHHHHHH-HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC----Ccc
Confidence 34555655 4679999999999655 444444 88999999996 3898874 55666666665555554 112
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc-------
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVG------- 202 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g------- 202 (561)
.+.+.+....++.+++.+...++..++++|++|+++ |+++.++...+.++|.++++.+++++.+..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 345556666667788888888999999999999988 9999999999999999999999999988888
Q ss_pred -chHHHHHHHHHHHHHHHHHHHhcc
Q 008565 203 -WAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 203 -~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
||..|++.++..+++.+..++..+
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~~~~~ 179 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTLFLAK 179 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999888876665554443333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=185.72 Aligned_cols=356 Identities=36% Similarity=0.613 Sum_probs=218.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc--cccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHH
Q 008565 102 FNTILLSSFIYFMGMVLLSLAVSVI--PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWW 179 (561)
Q Consensus 102 k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (561)
.|+++++.++.++|.+++.+++.+. ....+...+++++.++++|.|+..|+..++.+|+++++++.+ |.+.++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~---~~~~F~~f 77 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR---RDSFFNWF 77 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH---HHHHHHHH
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh---hhhhHHHH
Confidence 3788899999999999987775431 122345688999999999999999999999999999874332 88999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCchhH-HHHHHHHHHhhcccccC
Q 008565 180 YLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQ-APVGSPFTT-VAQVFVATARKWRVSET 257 (561)
Q Consensus 180 ~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 257 (561)
|++.|+|+.+++.+.+++.++.||...|.++.+..+++++.++..+++++.+ ++.+++..+ ...+.....+++....|
T Consensus 78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (372)
T PF00854_consen 78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVP 157 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-
T ss_pred HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999988888888777 666666666 33344444443333222
Q ss_pred CCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcc-cchhhhHHHHHHHHHHHHHH
Q 008565 258 HGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRL-CSLNQVEEVKLVIRLIPIWL 336 (561)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 336 (561)
.... .++ ....+... .... .............. ....|+. ++..++++.+.+.+.++.+.
T Consensus 158 ~~~~-~~~---~~~~~~~~-------~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 218 (372)
T PF00854_consen 158 KGSS-WLD---WALFQYSE-------RSIF--GIIVFIRAAVIFFP------EIFFWALFCQVQRVEELKALIRFLPIFL 218 (372)
T ss_dssp HHHH-HHH---HHHHHHCC-------CCCC--CCCCHHHHHHHHCC------CHHHHTTTSSTTTHHHCCHHHCHHHCCC
T ss_pred cchH-HHH---Hhhhhhhh-------hhhh--hhhhhccchhhhhh------hhhhcccCCccceeeeeeeeeeccccCe
Confidence 1000 000 00000000 0000 00000000000000 0000110 11233344455555666666
Q ss_pred HHHHHHHHHhhccchheeecccccccCCCc-eeeccccccchhhHHHHHHHHHhhc-------CCCCCCchhHHHHHHHH
Q 008565 337 SCLMFSCILVQLHTFFTKQGSTMRRSIGSN-FQVPPASLQSLVGLSILVAVPVITG-------HRSGITMLQRIGIGLFT 408 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~g~~~ 408 (561)
..+.++..+.+...+...+...++..+. + +.+|+..++.+|.+.++++.|++++ +.++++...++.+|+++
T Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~~~k~~~G~~~ 297 (372)
T PF00854_consen 219 FWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSPPQKFGIGMVF 297 (372)
T ss_dssp HHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------HHHHHHH-HH
T ss_pred EEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchhhhhhhHHHHH
Confidence 6677777777777777777767766666 6 8899999999999999999999443 44567888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 008565 409 SILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISI 488 (561)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~ 488 (561)
..+++++....+.+|......++ ..+.++.+..+++..+++.+..+...+...|.+|++..+..+|+++..
T Consensus 298 ~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~ 368 (372)
T PF00854_consen 298 AILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFAL 368 (372)
T ss_dssp HHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 99999988888765555544444 233366679999999999999999999777777777666666666554
Q ss_pred h
Q 008565 489 I 489 (561)
Q Consensus 489 ~ 489 (561)
.
T Consensus 369 ~ 369 (372)
T PF00854_consen 369 S 369 (372)
T ss_dssp H
T ss_pred h
Confidence 3
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-16 Score=160.97 Aligned_cols=155 Identities=11% Similarity=0.047 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCCChhh-hhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchh
Q 008565 54 LAGNLIQYLTNVLNEPTAT-AAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRK 132 (561)
Q Consensus 54 ~~~~l~~yl~~~lg~s~~~-~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (561)
..+++..|+.+++|++.++ .|.+.+++..++.++.+++|+++||+ |.|+++.++.+...+..++..++ .+.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa-------~Sl 115 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG-------TSV 115 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 4466777899999999999 99999999999999999999999997 99999999999999999999998 689
Q ss_pred HHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHH---HH
Q 008565 133 AVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGF---GV 209 (561)
Q Consensus 133 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f---~~ 209 (561)
..+.+.|++.|++.|... +...++..++|+++ |+++.|+.+.+..+|.++++++++++. .+||+.-+ ++
T Consensus 116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~I 187 (511)
T TIGR00806 116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNII 187 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHH
Confidence 999999999999999988 99999999999999 999999999999999999999999954 57888644 44
Q ss_pred HHHHHHHHHHHHHHh
Q 008565 210 MAGALALALAIFLIG 224 (561)
Q Consensus 210 ~~~~~~i~~~~~~~~ 224 (561)
......+++++.+++
T Consensus 188 sl~s~~~a~~~a~~L 202 (511)
T TIGR00806 188 SLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHHHHHHhC
Confidence 445555665555554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-16 Score=164.49 Aligned_cols=430 Identities=13% Similarity=0.032 Sum_probs=238.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhh----hccCchHHHHHH-H
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVAD----SYLGRFNTILLS-S 109 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grk~~~~~~-~ 109 (561)
.+++.+....+..++.+-...++++.|+ +++|.+..+.+.+..+..+...+.+|+.|+++| |+ ||||.++++ .
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~ 81 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHH
Confidence 3455666667777888888888898887 469999999999999999999999999999999 57 999998875 5
Q ss_pred HHHHHHHHHHHHhhhcc----c---ccc-h--hHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHH
Q 008565 110 FIYFMGMVLLSLAVSVI----P---LHY-R--KAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWW 179 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~~----~---~~~-~--~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (561)
...+++.+++.++.... . ... . ....+++..+..++.....++..++++|.+|+++++ ++.++++.
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~ 157 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYF 157 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHH
Confidence 55555666666542100 0 000 0 122334444555677777788899999999988611 35788999
Q ss_pred HHHHHHHHHHHHHHHHHh--hccc-------------cchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHH
Q 008565 180 YLGIVFGASAAVLVAIYL--QDNV-------------GWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQV 244 (561)
Q Consensus 180 ~~~~~lG~~igp~l~g~l--~~~~-------------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (561)
+.+.++|.++|+.++++. .+.+ +.+..|++.++..++..+...+..+|.+..++++. ..+
T Consensus 158 ~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-~~~---- 232 (477)
T TIGR01301 158 SFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-INS---- 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-hhh----
Confidence 999999999999998865 2211 56788988888777777766665555332111100 000
Q ss_pred HHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHH
Q 008565 245 FVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEE 324 (561)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (561)
+.++ ..+ ..++..+.+..+.. +..|
T Consensus 233 ------------------------~~~~---~~~---------~~~~~~~~~i~~~~--------~~mP----------- 257 (477)
T TIGR01301 233 ------------------------EAAP---PSK---------HGEEAFFGELFGAF--------KYLP----------- 257 (477)
T ss_pred ------------------------hccc---ccc---------cchhhhHHHHHHHH--------HHCC-----------
Confidence 0000 000 00000001100000 0001
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhhccchheeeccc-ccccCCCceeec---cccccchhhHHHHHHHHHhhcCCCCCC
Q 008565 325 VKLVIRLIPIWLSCLMFSC---ILVQLHTFFTKQGST-MRRSIGSNFQVP---PASLQSLVGLSILVAVPVITGHRSGIT 397 (561)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (561)
+.+.+++ ..+.+-|. .+..+.+-+.-+..+ -+..-...+... ..+...++.+...+...++.+..++.+
T Consensus 258 -~~m~~l~---~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g 333 (477)
T TIGR01301 258 -RPVWILL---LVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWG 333 (477)
T ss_pred -HHHHHHH---HHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111 11111111 111122211111000 000000000000 011112222222232222333223343
Q ss_pred chhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccch-hhhHHhHHHHHHHhhhhhhhhhHHHHhhhcch
Q 008565 398 MLQRI-GIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPIS-IWWLLPQYLLVSICDVFGIVGLQELFYDQMPE 475 (561)
Q Consensus 398 ~~~~i-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~ 475 (561)
.+++. .++.++.++++....+......+....++-. +....+.. .+..+..+.+.|+.........++++.+..|+
T Consensus 334 ~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~ 411 (477)
T TIGR01301 334 AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDG--ESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN 411 (477)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccc--cccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence 32333 6777788888777665531000000000000 00001111 35667777888999999999999999999995
Q ss_pred --hHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 476 --AMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRF 546 (561)
Q Consensus 476 --~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 546 (561)
+.+|..+|+.|++..+...+.....+.+.+ ++. ++....+.+.++.++++.+..++..++.
T Consensus 412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~-----~~g-----~~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQ-----LFG-----GGNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH-----HcC-----CCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 455999999999999999998888877554 221 1122356666666677777776665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-16 Score=165.27 Aligned_cols=358 Identities=11% Similarity=0.047 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc---cCchHHH-HHHHHHHHH
Q 008565 39 FIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY---LGRFNTI-LLSSFIYFM 114 (561)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grk~~~-~~~~~~~~~ 114 (561)
......+..++.+....++++.|+++.+|++..++|.+.+...+...+..|+.|+++||. +||||.. +++.+...+
T Consensus 12 ~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~ 91 (448)
T PRK09848 12 GYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI 91 (448)
T ss_pred hhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence 334466677777777888999999999999999999999999999999999999999994 3667655 455444444
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHH-----HHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLG-----IVFGASA 189 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-----~~lG~~i 189 (561)
...++................+...++.+++.+...++..++..+...+.++ |.+..+...++ ..++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r~~~~~~~~~~~~~~~ 166 (448)
T PRK09848 92 FSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAARGIAASLTFVCLAFLI 166 (448)
T ss_pred HHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322110000111223334445567777887787777887777655331 77766655443 3455556
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCC
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHE 269 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (561)
+|.+.+.........+..+. .+..+++.+..+......+++.+++.+...
T Consensus 167 ~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~----------------------------- 216 (448)
T PRK09848 167 GPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPS----------------------------- 216 (448)
T ss_pred HHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCC-----------------------------
Confidence 66665543211111111111 122222222222221111111100000000
Q ss_pred CCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008565 270 LDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLH 349 (561)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (561)
..+. ++ .-.++ |.... ..+...+.+..+....
T Consensus 217 ------------------------~~~~----------------~~----~l~~n-~~f~~---~~~~~~~~~~~~~~~~ 248 (448)
T PRK09848 217 ------------------------LKIS----------------LQ----TLKRN-RPLFM---LCIGALCVLISTFAVS 248 (448)
T ss_pred ------------------------HHHH----------------HH----HHhCC-chHHH---HHHHHHHHHHHHHHHh
Confidence 0000 00 00011 11111 1111122222222221
Q ss_pred ---chheeecccccccCCCceeeccccccchh-hHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008565 350 ---TFFTKQGSTMRRSIGSNFQVPPASLQSLV-GLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVR 425 (561)
Q Consensus 350 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~ 425 (561)
.++.......+ .....+...+ .+..++..++..+..+|.+.++.+.+|..+..++.+.+.+..
T Consensus 249 ~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~----- 315 (448)
T PRK09848 249 ASSLFYVRYVLNDT--------GLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS----- 315 (448)
T ss_pred hhheeeEeeecCCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 22222111110 0011111222 344555667766666667777888888888877766655421
Q ss_pred HhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchh-------HHHHHHHHHHHHhhhhhhhhhH
Q 008565 426 TARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEA-------MRSIGAAAYISIIGVGSFINTG 498 (561)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~-------~rg~~~g~~~~~~~~g~~lg~~ 498 (561)
..+.+......++.++|++...+...++..|..|.+ .+|...|++++.+.+|..+|+.
T Consensus 316 ---------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~ 380 (448)
T PRK09848 316 ---------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS 380 (448)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence 123455556677889999999999999999988764 4699999999999999999999
Q ss_pred HHhhhcccc
Q 008565 499 VIEVVEAIT 507 (561)
Q Consensus 499 v~~~i~~~~ 507 (561)
+.+.+.+..
T Consensus 381 i~g~~l~~~ 389 (448)
T PRK09848 381 IPAFILGLS 389 (448)
T ss_pred HHHHHHHHc
Confidence 999887644
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-18 Score=165.16 Aligned_cols=148 Identities=19% Similarity=0.160 Sum_probs=136.8
Q ss_pred hcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHH
Q 008565 65 VLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAV 144 (561)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 144 (561)
.++-+.++.|++.+...+.+.+..|+.|.+.||+ |+|-.+++|+.+....++++.+. ++.+.++++|.++|+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGV 171 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhh
Confidence 4566778899999999999999999999999997 99999999999999999999999 789999999999999
Q ss_pred hccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 145 GEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 145 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
|.++...+..++++|.||+++. |++++|+.-....+|-.+||.++|.+.+..|++.+|.+.++..++...+.++.
T Consensus 172 gsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999874 89999999999999999999999999999999999999998887776665554
Q ss_pred c
Q 008565 225 I 225 (561)
Q Consensus 225 ~ 225 (561)
.
T Consensus 247 i 247 (464)
T KOG3764|consen 247 I 247 (464)
T ss_pred e
Confidence 4
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-15 Score=158.47 Aligned_cols=383 Identities=13% Similarity=0.090 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008565 39 FIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVL 118 (561)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~ 118 (561)
.+....++..+.+-...++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||...+||.+.+..++.++....
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555666667777788999999975 68999999999999999999999999999999734677777766666665555
Q ss_pred HHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH-HHHh
Q 008565 119 LSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV-AIYL 197 (561)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l-~g~l 197 (561)
.... .+.+.+++..++..+......|...++.-+...+ +..-+|-....+++|.+++... ++++
T Consensus 85 ~~~~-------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf~~~~~~~~~~~ 149 (400)
T PF03825_consen 85 LAFS-------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGFIVAALAFGGLL 149 (400)
T ss_pred HHHh-------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHHHHHHHHHHHHH
Confidence 5544 4566666666777777777777777777776653 2233455555666666666433 2333
Q ss_pred hcccc---chHHHHHHHHHHHHHHHHHHHhcccccc-cCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 198 QDNVG---WAVGFGVMAGALALALAIFLIGIKRYRK-QAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 198 ~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
....+ ....+++.+...++.....+. .|+.+. ++.++ +.+
T Consensus 150 ~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~---------------------------------~~~-- 193 (400)
T PF03825_consen 150 GGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKE---------------------------------SVK-- 193 (400)
T ss_pred HhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCC---------------------------------Ccc--
Confidence 33222 223455554433332222222 222110 00000 000
Q ss_pred cccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhe
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFT 353 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (561)
.+ ...|. + +-.++++.+.-.+...+........+.....++.
T Consensus 194 ---~~--------------~~~~~----------------~-----~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~ 235 (400)
T PF03825_consen 194 ---KL--------------LGLDA----------------L-----KLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQ 235 (400)
T ss_pred ---cc--------------cchHH----------------H-----HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 0 0001111211111111222222222222111211
Q ss_pred eecccccccCCCceee-ccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008565 354 KQGSTMRRSIGSNFQV-PPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGL 432 (561)
Q Consensus 354 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (561)
.. + ++.. ..+....++.+.=+....+.+|..+|.+.++.+.++.+...+-...+++.+
T Consensus 236 ~~--------g-g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------------ 294 (400)
T PF03825_consen 236 EL--------G-GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------------ 294 (400)
T ss_pred Hc--------c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 11 1 1111 111111222222222222355556678888889999999998888877752
Q ss_pred CCCCCCcccchh--hhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHH-hhhhhhhhhHHHhhhcccccC
Q 008565 433 IDSPKAIVPISI--WWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISI-IGVGSFINTGVIEVVEAITHR 509 (561)
Q Consensus 433 ~~~~~~~~~~~~--~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~-~~~g~~lg~~v~~~i~~~~~~ 509 (561)
.+.+. .......++.|+..++...+...++.+.+|++.|++++++++.. .++|..+|..+.|++.|..+.
T Consensus 295 -------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 295 -------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred -------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 11111 11223345789999999999999999999999999999998864 789999999999999883211
Q ss_pred CcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 510 SWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
.. ...+..++.+.+++.++..+++++..|+
T Consensus 368 ~~------~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 368 RG------MFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hh------hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 00 0112234455555566666665555443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-16 Score=166.90 Aligned_cols=356 Identities=10% Similarity=0.063 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc---cCchHH-HHHHHHHHHHHH
Q 008565 41 IMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY---LGRFNT-ILLSSFIYFMGM 116 (561)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grk~~-~~~~~~~~~~~~ 116 (561)
.+..+..++.+..+..+++.|+.+.+|+++.++|.+.++..+...+..|+.|+++||. +||||. ++.+.+..++..
T Consensus 15 g~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~ 94 (444)
T PRK09669 15 GLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC 94 (444)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH
Confidence 3444556666677788999999999999999999999999999999999999999993 277555 555656666665
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhccc-CCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDE-RNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
+++..... .........+++..++.+.+..+...+..++.+|+.++ ++ |.+..+......++|..+++.+..
T Consensus 95 ~l~f~~p~-~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l~~~r~~~~~~G~~i~~~~~~ 167 (444)
T PRK09669 95 LLTFYTPD-FGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSLQSWRFALSFIGGLIVSVIAL 167 (444)
T ss_pred HHHHhCCC-CCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443310 00112234445555556666666667777899998844 44 888888888888888877776544
Q ss_pred Hhhc-------cccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCC
Q 008565 196 YLQD-------NVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGH 268 (561)
Q Consensus 196 ~l~~-------~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (561)
.+.. ..||+..+.+.+++.++..+..+...++..+ ++++++ .+
T Consensus 168 pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~-~~~~~~-~~---------------------------- 217 (444)
T PRK09669 168 PLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYT-PEVDNS-SS---------------------------- 217 (444)
T ss_pred HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecC-CCCcCC-CC----------------------------
Confidence 3332 2356766666665554444333332222111 100000 00
Q ss_pred CCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 269 ELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQL 348 (561)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (561)
..+..+ ...++ |.........+............
T Consensus 218 -------------------------~~~~~~--------------------~~~~n-~~~~~l~~~~~~~~~~~~~~~~~ 251 (444)
T PRK09669 218 -------------------------VWKDLK--------------------LLLGN-SQWRIMFIFNVVLLTAVVTRGGA 251 (444)
T ss_pred -------------------------HHHHHH--------------------HHhCC-chHHHHHHHHHHHHHHHHHHhhh
Confidence 000000 00001 11111111111111111111111
Q ss_pred cchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 349 HTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTAR 428 (561)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~ 428 (561)
..++..+.. ... .....+.....+..++..++..+..+|.++++....+.++..+....+.+..
T Consensus 252 ~~y~~~~~~--~~~------~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------- 315 (444)
T PRK09669 252 TLYYVNYVL--LRP------DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-------- 315 (444)
T ss_pred hheeeeeec--CCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 122222111 000 0011222223344445555554544445555666666655544333222221
Q ss_pred hcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcc-------hhHHHHHHHHHHHHhhhhhhhhhHHHh
Q 008565 429 ENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMP-------EAMRSIGAAAYISIIGVGSFINTGVIE 501 (561)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~~g~~~~~~~~g~~lg~~v~~ 501 (561)
+.+.+.+.+..++.+++.+...+..++++.|..+ .+..|...|++++...+|..+|+.+.+
T Consensus 316 ------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 316 ------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445666678899999999999999998875 344677889999999999999999999
Q ss_pred hhcccc
Q 008565 502 VVEAIT 507 (561)
Q Consensus 502 ~i~~~~ 507 (561)
.+.+..
T Consensus 384 ~ll~~~ 389 (444)
T PRK09669 384 WILAWV 389 (444)
T ss_pred HHHHHc
Confidence 988754
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-16 Score=166.12 Aligned_cols=149 Identities=13% Similarity=0.212 Sum_probs=122.1
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHH
Q 008565 58 LIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFT 137 (561)
Q Consensus 58 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (561)
...++..++|-+ ....|+.....++..+..++.|+++|.+ |||..++.+.++..+|.+.+..+ ++...+++
T Consensus 66 ~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA-------~~~~~~ia 136 (599)
T PF06609_consen 66 ILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA-------QNMNTFIA 136 (599)
T ss_pred HHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------CcHHHHHH
Confidence 335777888854 6678899999999999999999999997 99999999999999999999998 79999999
Q ss_pred HHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008565 138 ALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALA 217 (561)
Q Consensus 138 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~ 217 (561)
+..+.|+|.|... .....++|..|.+. |..+..+.....-.....+|.++..+..+.+|||.|++.++...++
T Consensus 137 g~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 137 GMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIA 209 (599)
T ss_pred HHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHH
Confidence 9999999977654 55667899999887 8777766665555555567777776666678999999998877666
Q ss_pred HHHHH
Q 008565 218 LAIFL 222 (561)
Q Consensus 218 ~~~~~ 222 (561)
++..+
T Consensus 210 ~vl~~ 214 (599)
T PF06609_consen 210 LVLIF 214 (599)
T ss_pred HHHHH
Confidence 55443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-22 Score=216.38 Aligned_cols=393 Identities=13% Similarity=0.100 Sum_probs=225.4
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccch
Q 008565 72 TAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKP 151 (561)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~ 151 (561)
..++..+...++..+|.+++|+++||+ |||++++++..+..++.++..++. ...+...+.++|++.|++.|...+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~R~~~G~~~g~~~~ 121 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAP----SYNNFWMLLIGRFLIGFGIGGAYV 121 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccc----cccccccccccccccccccccccc
Confidence 467899999999999999999999997 999999999999999999999881 011889999999999999999999
Q ss_pred hhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc---ccchHHHHHHHHHHHHHHHHHHHhcccc
Q 008565 152 CVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN---VGWAVGFGVMAGALALALAIFLIGIKRY 228 (561)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~---~g~~~~f~~~~~~~~i~~~~~~~~~~~~ 228 (561)
..+.++.|..|++. |+...++.+....+|..++..++..+.+. .+||..+.+..+..++.++...+
T Consensus 122 ~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~----- 190 (451)
T PF00083_consen 122 VSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFF----- 190 (451)
T ss_pred cccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence 99999999999999 99999999999999998887666544332 34998887777665544333322
Q ss_pred cccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhccccccc
Q 008565 229 RKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLAS 308 (561)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (561)
.||+|+|+..+++..++++..++ .++.+. .+.+..+.........
T Consensus 191 ---------------------------~pESP~wL~~~~~~~~A~~~l~~----~~~~~~-~~~~~~~~~~~~~~~~--- 235 (451)
T PF00083_consen 191 ---------------------------LPESPRWLLSKGRDEEAEKVLRK----LRGKEI-EDEEIEEIKAEKKESQ--- 235 (451)
T ss_pred ---------------------------cccccceeccccccccccccccc----cccccc-cccccccccccccccc---
Confidence 33444444443322222111111 000000 0000000000000000
Q ss_pred ccCCCCcccchhhhHHHHHHHHHHHHHHHHHH-HHHHHhhccchheeecccccccCCCceeec---cccccchhhHHHHH
Q 008565 309 RERNPWRLCSLNQVEEVKLVIRLIPIWLSCLM-FSCILVQLHTFFTKQGSTMRRSIGSNFQVP---PASLQSLVGLSILV 384 (561)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 384 (561)
.....|+....++. .+++....+.+...... .......+.+.+. ... +.... .........++.++
T Consensus 236 ~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~-------~~~--~~~~~~~~~~~~~~~~~~~~~~ 305 (451)
T PF00083_consen 236 ESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIF-------ENA--GISNSFLATLILGLVNFLGTLL 305 (451)
T ss_pred ccceeeeecccccc-ccccccccccccccccccccccccccccccc-------ccc--cccccccccccccccccccccc
Confidence 00011221111111 11222211111111110 0000011111111 111 01111 11111112222222
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHH-hhhh
Q 008565 385 AVPVITGHRSGITMLQRIGIGLFTSILTMIVAA---LVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSI-CDVF 460 (561)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-g~~~ 460 (561)
...+.+| .++++....+..+..++.+.++ .... +. ...... ..+...++..+ ....
T Consensus 306 ~~~~~~~----~GRr~~~i~~~~~~~~~~~~~~~~~~~~~--------~~-------~~~~~~-~~i~~~~l~~~~~~~g 365 (451)
T PF00083_consen 306 AIFLIDR----FGRRKLLIIGLLLMAICSLILGIIFFLGV--------SS-------SSWWSI-LSIVFLALFFAFFSLG 365 (451)
T ss_pred ccccccc----ccccccccccccccccccccccccccccc--------cc-------cccccc-ccceeeeecccccccc
Confidence 2222333 3344555566666666555543 1100 00 000111 22222222222 2224
Q ss_pred hhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHH
Q 008565 461 GIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFI 540 (561)
Q Consensus 461 ~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 540 (561)
..+..+.+..|..|.+.|+++.++....+.+++.+++.+.+.+.+.. +....+++.++++++..++.+
T Consensus 366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~------------~~~~~~~i~~~~~~i~~i~~~ 433 (451)
T PF00083_consen 366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL------------GGWGVFLIFAGVCLIAIIFVY 433 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc------------cccccchhhHHHHHHHHhhee
Confidence 45777788899999999999999999999999999999988877622 112357777888888888888
Q ss_pred HHHhhcccccccccccc
Q 008565 541 WIAKRFVYKKVLEDESK 557 (561)
Q Consensus 541 ~~~~~~~~~~~~~~~~~ 557 (561)
++.+|+++++.+|.++.
T Consensus 434 ~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 434 FFLPETKGKTLEEIQEM 450 (451)
T ss_pred EEEeeCCCCCHHHHHhh
Confidence 88999999998887653
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=163.30 Aligned_cols=384 Identities=11% Similarity=0.058 Sum_probs=221.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+..|.+....++-.+++-...++++.++++..|+|.++.|.+.++..+...+.+|+.|.++||+ |.||-+++.+....+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4566666667777777667789999999988999999999999999999999999999999997 966655444333222
Q ss_pred --HHHHH-HHhhhcccccchhHHHHHHHHHHHHhcc----ccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHH
Q 008565 115 --GMVLL-SLAVSVIPLHYRKAVFFTALYILAVGEG----GHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGA 187 (561)
Q Consensus 115 --~~~~~-~~~~~~~~~~~~~~~l~~~~~l~g~g~g----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 187 (561)
+-... .+.. ... .| .+++.++.++..+ ...|..-+++-+..-. .+-=+|-..+.+++|.
T Consensus 86 l~~pff~~v~~p--ll~-~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--------~~feYG~~R~wGSig~ 151 (412)
T PF01306_consen 86 LFGPFFIYVFGP--LLQ-SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--------NGFEYGRARMWGSIGF 151 (412)
T ss_dssp TCHHHHHHTHHH--HHH-TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--------HSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHH-HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--------hcCCcchHHHHhhHHH
Confidence 22222 1110 000 11 2223223333333 3333333333332111 2223455677899999
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccC
Q 008565 188 SAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHG 267 (561)
Q Consensus 188 ~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (561)
+++..++|++.+ .+-+..|++.....++..++.+..+++..++.+..
T Consensus 152 ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-------------------------------- 198 (412)
T PF01306_consen 152 AIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-------------------------------- 198 (412)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS--------------------------------
T ss_pred HHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh--------------------------------
Confidence 999999999986 45567788766655555444444332211111000
Q ss_pred CCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHH-HHHHHHHh
Q 008565 268 HELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSC-LMFSCILV 346 (561)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 346 (561)
+.+. .+. ++.+..|-. +..++ |+.+.+..+.... ..+....+
T Consensus 199 -~~~~--~~~------------~~~~~~~~~---------------------~l~k~-~~fw~~~l~v~g~~~~Y~vfdq 241 (412)
T PF01306_consen 199 -DALG--AKK------------DKVSLKDVL---------------------SLFKM-RNFWFFVLFVIGVAAIYDVFDQ 241 (412)
T ss_dssp -TTSS--S------------------HHHHH---------------------HHTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccc--cCC------------CCCcHHHHH---------------------HHhcc-hhHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 000000000 00011 2223333333333 33344444
Q ss_pred hccchheeecccccccCCCceeeccccccchhhHHHHHHHHH---hhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008565 347 QLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPV---ITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKR 423 (561)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~ 423 (561)
|++.++..+-.. .. ..+..+...+.+.+++-.++ ..+..+|.++++.+.++..++.+-....++.+
T Consensus 242 qf~~y~~~~f~~--~~------~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--- 310 (412)
T PF01306_consen 242 QFPIYFASFFQS--AG------QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--- 310 (412)
T ss_dssp HHHHHHHHTSSS--HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHhcc--cc------cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc---
Confidence 444444432111 11 11222333333333322222 33334457788888888888888877777653
Q ss_pred HHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHH-HHHhhhhhhhhhHHHhh
Q 008565 424 VRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAY-ISIIGVGSFINTGVIEV 502 (561)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~~~g~~lg~~v~~~ 502 (561)
+++++.+.-.+.++-..+...+..-++.+..|++..++...+. ++..++|..+.+.+.|.
T Consensus 311 -------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ 371 (412)
T PF01306_consen 311 -------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY 371 (412)
T ss_dssp -------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 5667888889999999999999999999999999999999985 68899999999999999
Q ss_pred hcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 503 VEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 503 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
+.|. -+.+..|++++++.+...++..+..++
T Consensus 372 lyd~------------~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 372 LYDR------------IGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hHhh------------cCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 9882 233457888888887777776666544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-16 Score=164.12 Aligned_cols=364 Identities=12% Similarity=0.039 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhh----hccCchH-HHHHHHHHHHH
Q 008565 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVAD----SYLGRFN-TILLSSFIYFM 114 (561)
Q Consensus 40 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grk~-~~~~~~~~~~~ 114 (561)
..+..+..++.+..+.++++.|+++.+|+++..+|.+..+.-+..++..|+.|+++| |+ |||| -++++...+++
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i 89 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSV 89 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHH
Confidence 344566677777788899999999999999999999999999999999999999999 65 8855 55556666666
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcc-cCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFD-ERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+..++..... .........+++..++..++..+...+..++.+|+.+ +++ |.+..++.....++|+.+.+.+
T Consensus 90 ~~~llf~~p~-~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 90 VLFLLFSAHL-FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHcCCC-CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6555544310 0000112334444556677777777888899999984 555 9999888777777776666555
Q ss_pred HHHhhcc-------ccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCcccc
Q 008565 194 AIYLQDN-------VGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYH 266 (561)
Q Consensus 194 ~g~l~~~-------~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (561)
...+.+. .+|+....+.++..++..+..++..++... ++..++
T Consensus 163 ~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~----------------------------- 212 (473)
T PRK10429 163 TLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVS----------------------------- 212 (473)
T ss_pred HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-cccccc-----------------------------
Confidence 4433221 234444444444433333333322222100 000000
Q ss_pred CCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008565 267 GHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILV 346 (561)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (561)
+.+ +...+.|..+ ...++ |.....+...+..........
T Consensus 213 --~~~------------------~~~~~~~~~~--------------------~~~~n-~~~~~ll~~~~~~~~~~~~~~ 251 (473)
T PRK10429 213 --AEG------------------SHLTLKDIVA--------------------LIYKN-DQLSCLLGMALAYNIASNIIN 251 (473)
T ss_pred --ccc------------------cCCCHHHHHH--------------------HHhcC-HHHHHHHHHHHHHHHHHHHHh
Confidence 000 0000000000 00011 222222111111111112222
Q ss_pred hccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008565 347 QLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRT 426 (561)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~ 426 (561)
....++..+... +. .....+.....+..++..++..+..+|.++++.+.++..+..++.+.+.+..
T Consensus 252 ~~~~y~~~y~~~-~~-------~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~------ 317 (473)
T PRK10429 252 GFAIYYFTYVIG-DA-------DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG------ 317 (473)
T ss_pred hheeeEEEEECC-CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh------
Confidence 222222222111 00 0112233344455666667766666667777777777766565554433210
Q ss_pred hhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcc-------hhHHHHHHHHHHHHhhhhhhhhhHH
Q 008565 427 ARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMP-------EAMRSIGAAAYISIIGVGSFINTGV 499 (561)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~~g~~~~~~~~g~~lg~~v 499 (561)
+. .+.+.+.+++..++.+++.+...+...++..|..+ .+..|...|..++...+|..+++.+
T Consensus 318 -----~~------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 318 -----LA------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred -----cc------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 00 11233445556677888988888888899998866 4456778999999999999999999
Q ss_pred Hhhhcccc
Q 008565 500 IEVVEAIT 507 (561)
Q Consensus 500 ~~~i~~~~ 507 (561)
.+.+.+..
T Consensus 387 ~g~~l~~~ 394 (473)
T PRK10429 387 IGVVLGLI 394 (473)
T ss_pred HHHHHHHc
Confidence 99998754
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-15 Score=162.39 Aligned_cols=377 Identities=14% Similarity=0.090 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccC-----chHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLG-----RFNTILLSSFI 111 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-----rk~~~~~~~~~ 111 (561)
...+....+.+.+. +.+...++.++.+++|++.++.+.+.+...+...+-.+ +|.++||+ + ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 34445577888888 78888899999999999999999999999998887554 99999997 7 67767776555
Q ss_pred HH-HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHH
Q 008565 112 YF-MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAA 190 (561)
Q Consensus 112 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig 190 (561)
.. +....+... .+......+.+++.+++.+....+..++..|..+ ++++. ++...+..+...++|..+|
T Consensus 105 ~~~~~~~~l~~~------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~---~~~~~s~~~~~~~~G~~vg 174 (468)
T TIGR00788 105 GSAILYGLLPGK------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA---GPSLVSWMWGASATGGLIS 174 (468)
T ss_pred HHHHHHHhcccc------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc---CCCeeeHHHHHHHHHHHHH
Confidence 42 222222211 1223334447788999999888999999999998 44221 3344556666677999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccc-cCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCC
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRK-QAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHE 269 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (561)
+.++|.+.+..+|+..|++.++..++..+...+. ++.++ ..|+..+... . +
T Consensus 175 ~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~~~~~~~~~~-~----------------------~---- 226 (468)
T TIGR00788 175 SLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERRAFVRPRIGTYLE-M----------------------N---- 226 (468)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-ccccccccccccccch-h----------------------h----
Confidence 9999999999999999998887776664333333 32210 1111000000 0 0
Q ss_pred CCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 008565 270 LDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLM-FSCILVQL 348 (561)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 348 (561)
.. .. .....+..+.. ....| .....+.+...+ ....+ +.......
T Consensus 227 ~~-------------~~----~~~~~~~~~~~--------~~~l~------~~l~~~~i~~~l---~fifl~~~~~~~~~ 272 (468)
T TIGR00788 227 MA-------------LL----TLGVLANVKVQ--------ILGLR------GAIQLLEIAKPL---IFIFLSYANLPGAS 272 (468)
T ss_pred hh-------------hh----hhhHHHHHHHH--------HHHHH------HHHhcHHHHHHH---HHHHHHHhhcCCCC
Confidence 00 00 00000000000 00000 000001111111 11111 11111111
Q ss_pred cchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 349 HTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTAR 428 (561)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~ 428 (561)
.+.+..+. ..++ .-....+.......+..++...+..+..++.+.++.+.++.++..++.+...+.. .+...
T Consensus 273 ~~~f~~~~----~~lG-~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~-~~~~~-- 344 (468)
T TIGR00788 273 GSVFCATT----QCLP-GGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILV-KRWNL-- 344 (468)
T ss_pred ceeEEEEc----ccCC-CCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeee-ecccc--
Confidence 11111111 1121 1112223344445566666666677766677777777888887777664432110 00000
Q ss_pred hcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 429 ENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
.-| ....+++....++.+++.++...+...++.+.+|++.+|+..|+.++..++|..+++.+++.+.+
T Consensus 345 ~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 345 AFG---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred ccC---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01123455666788888888898899999999999999999999999999999999999888877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-15 Score=158.81 Aligned_cols=177 Identities=15% Similarity=0.049 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHH--HHHHHHHHHHhhhHH-HHHhhhccCchHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQD--VNNWVGISSIFPLLG-AFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~--~~~~~~~~~~~~~~~-G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
...+....+.+.+.+....+.+|.|+++ .|.|.++.|.+ .+.......+..|+. ++.+||+ ||||..++.+.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 4456667788888888888999999975 59999999997 466777787777777 5579996 99998765543322
Q ss_pred H-HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 114 M-GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 114 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
. ....+.... ........+.....+.++..+...+...++..|..++++ ++...+....+..+|..+|+.
T Consensus 81 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~g~~ 151 (390)
T TIGR02718 81 SACLASLALVG---PDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFGGGA 151 (390)
T ss_pred HHHHHHHHcCC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHHHHH
Confidence 2 122222110 000112233333444555556666666777777777666 777777787888999999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
..+++.+..||+..|++.++..++..+..+..
T Consensus 152 ~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 152 GTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999887776655554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=151.72 Aligned_cols=137 Identities=21% Similarity=0.149 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccch
Q 008565 52 YGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYR 131 (561)
Q Consensus 52 ~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (561)
......+.+.+++.++++..|++.+...+..++.++++++|++.+|+ |+|+.+++|+.++++++.+++-++ +..+
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa----~~~~ 103 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAA----SSKS 103 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhh----hhhh
Confidence 34555666778899999999999999999999999999999999997 999999999999999998886542 2257
Q ss_pred hHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 132 KAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199 (561)
Q Consensus 132 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~ 199 (561)
+..++.+.++.+.|.+......+++++...++++ ...-+++.+....+|++++|++++++..
T Consensus 104 y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 104 YGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999887 6667889999999999999999998876
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-16 Score=164.70 Aligned_cols=421 Identities=14% Similarity=0.142 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGN---LIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~---l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
-|.+++..|+.+...+++... +-..++++++.+..+.+|+.++......+..|+.+.+.||+ |.|++.+.|.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence 466666777777776665532 33456788999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHH-HHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTAL-YILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
++.++..++ .+.+.+++.. ++.|+|.|....+...++..+|+++ |+.+.|+...+..+|..+=|.
T Consensus 123 ~g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~GsG~G~~~~~~ 188 (509)
T KOG2504|consen 123 LGLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGTGVGTVVFPP 188 (509)
T ss_pred HHHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccCCcceeeHHH
Confidence 999999999 5676666544 6789999998888888888777654 999999999999999999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCC
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDD 272 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (561)
+..++.+..|||..+++.+.+.+-........+|.....++. ...+... .....+.... +.+.
T Consensus 189 l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~~~~~~~~~~-------~~~~ 251 (509)
T KOG2504|consen 189 LLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------SAASVESTPK-------PVEL 251 (509)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------cccccccccc-------cccc
Confidence 999999999999999888877765555555555432222221 0000000 0000000000 0000
Q ss_pred CcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhH---HHHHH--HHHHHHHHHHHHHHHHHhh
Q 008565 273 DDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVE---EVKLV--IRLIPIWLSCLMFSCILVQ 347 (561)
Q Consensus 273 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~ 347 (561)
+....+.+ .......++....+ ....|+....+... |...+ ...+.+.....+....+..
T Consensus 252 ~~~~~~~~--~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~ 316 (509)
T KOG2504|consen 252 RISERDSG--LKKLSLSNLATLKR-------------GPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV 316 (509)
T ss_pred ccccCCCC--CCcccccchhhhhh-------------CCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 00000000 00000000000000 01111100000000 01110 0111111111111111111
Q ss_pred ccchheeecccccccCCCceee-ccccccchhhHHHHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008565 348 LHTFFTKQGSTMRRSIGSNFQV-PPASLQSLVGLSILVAVPVITGHRSG--ITMLQRIGIGLFTSILTMIVAALVEAKRV 424 (561)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 424 (561)
...++..+. . .. ++.. ..+.+..+....-++.-++.....++ ........+++++.+++.+++...
T Consensus 317 p~~~l~~~~---~-~~--g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~----- 385 (509)
T KOG2504|consen 317 PFVYLPSYA---K-SL--GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA----- 385 (509)
T ss_pred HHHHHHHHH---h-hc--CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 111122111 1 11 1111 12223333333334444443332222 234444556666666666555443
Q ss_pred HHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhc
Q 008565 425 RTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVE 504 (561)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~ 504 (561)
.+++.+....+++|++.+...........+..+.+.-..+.|+..++..++..+||-+.+.+.
T Consensus 386 -----------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 386 -----------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence 355667777788999999988888889999999999999999999999999999999999888
Q ss_pred ccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008565 505 AITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIA 543 (561)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 543 (561)
|.+ +.++..|.+.+...+++.++.++..
T Consensus 449 d~t-----------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 449 DIT-----------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ecc-----------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 854 2345556666666666665555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-16 Score=165.11 Aligned_cols=356 Identities=13% Similarity=0.116 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhh----hccCchHHH-HHHHHHHHHHHHH
Q 008565 44 EMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVAD----SYLGRFNTI-LLSSFIYFMGMVL 118 (561)
Q Consensus 44 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----r~~Grk~~~-~~~~~~~~~~~~~ 118 (561)
.+..++.......++..|+.+.+|+++...|.+..+..+..++..|+.|+++| |+ ||||.. +++....+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 35556666667778999999999999999999999999999999999999999 76 977764 4566777777666
Q ss_pred HHHh-hhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008565 119 LSLA-VSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 119 ~~~~-~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l 197 (561)
+... ............+.+..++..++......+..++.+|..+++++ |.+..+.......+|..+...+.+.+
T Consensus 89 lf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l 163 (428)
T PF13347_consen 89 LFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPIL 163 (428)
T ss_pred hhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6644 10001111223345666667888888888889999999985432 99999998888888887666666655
Q ss_pred hccc-------cchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCC
Q 008565 198 QDNV-------GWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHEL 270 (561)
Q Consensus 198 ~~~~-------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (561)
.+.. +|+...++.++..++..+..+...||.+.+.+++++
T Consensus 164 ~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~--------------------------------- 210 (428)
T PF13347_consen 164 VSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK--------------------------------- 210 (428)
T ss_pred hhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc---------------------------------
Confidence 4322 577777666666665555555544441111000000
Q ss_pred CCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008565 271 DDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHT 350 (561)
Q Consensus 271 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (561)
.. . .++.++... ++ |.........++....+........
T Consensus 211 -----~~---------------~----------------~~~~~~~~~----~n-r~~~~l~~~~~~~~~~~~~~~~~~~ 249 (428)
T PF13347_consen 211 -----KI---------------S----------------LRDSLRSLF----RN-RPFRILLLAFFLQWLAFALMNTFLP 249 (428)
T ss_pred -----cc---------------c----------------cccchhhhc----cc-chHHHHHHHHHHHHhhhhhhhhHHH
Confidence 00 0 000010000 11 1111111111111111111111112
Q ss_pred hheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008565 351 FFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTAREN 430 (561)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (561)
++..+....+. ..+.+.....+..++..|++.+..+|.++++.+..+.++..++.+++.+..
T Consensus 250 y~~~~vl~~~~--------~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---------- 311 (428)
T PF13347_consen 250 YYFTYVLGNEG--------LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG---------- 311 (428)
T ss_pred HHHHHHhcCch--------hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH----------
Confidence 22222111111 122333345566666777776666667777888889999888888776652
Q ss_pred CCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcch-------hHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 008565 431 GLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPE-------AMRSIGAAAYISIIGVGSFINTGVIEVV 503 (561)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~-------~~rg~~~g~~~~~~~~g~~lg~~v~~~i 503 (561)
..+.+...+..++.|++.+...+..+++..|..+. +..|...|++++...++..+++.+.+.+
T Consensus 312 ----------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 ----------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ----------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 13567788888999999999999999999888863 4579999999999999999999999988
Q ss_pred cccc
Q 008565 504 EAIT 507 (561)
Q Consensus 504 ~~~~ 507 (561)
.+..
T Consensus 382 l~~~ 385 (428)
T PF13347_consen 382 LALV 385 (428)
T ss_pred HHHh
Confidence 8744
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-16 Score=169.80 Aligned_cols=187 Identities=15% Similarity=0.171 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
.+++.+++.+....+......+.......-++++++++.++.|++.+.+.+++.++.++.|+++||+ ||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 3344443434434444444455666666677889999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhccc------------------------c--------------------cchhHHHHHHHHHHHHhcc
Q 008565 112 YFMGMVLLSLAVSVIP------------------------L--------------------HYRKAVFFTALYILAVGEG 147 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~------------------------~--------------------~~~~~~l~~~~~l~g~g~g 147 (561)
++++.+++.+.-+... . +..+..++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 9999988876621100 0 0124567799999999999
Q ss_pred ccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc----------------------cchH
Q 008565 148 GHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV----------------------GWAV 205 (561)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~----------------------g~~~ 205 (561)
...+...+++.|.+|+++ |+..+++++.+..+|..+|+.+++++.+.+ +|+.
T Consensus 188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl 261 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI 261 (633)
T ss_pred cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence 999999999999999999 999999999999999999999999887532 2777
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 008565 206 GFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 206 ~f~~~~~~~~i~~~~~~~~~ 225 (561)
.|++.+++.++..+.++.+.
T Consensus 262 ~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 262 GFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 78877766666554444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=158.98 Aligned_cols=141 Identities=14% Similarity=0.124 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-------CChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 44 EMAQRFAYYGLAGNLIQYLTNVLN-------EPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 44 ~~~~~~~~~~~~~~l~~yl~~~lg-------~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
-|....-.+.+....+.+-.-..| +++...+.+.++-.++.++++++.|+++||+ |||+++...+++.++++
T Consensus 50 fftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t 128 (538)
T KOG0252|consen 50 FFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICS 128 (538)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHH
Confidence 333444444555555544332222 5566778889999999999999999999997 99999999999999999
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
+++.++........-...++..|+++|+|.|+-+|...+..+|..-++. |+...+...++..+|...|.
T Consensus 129 ~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ 197 (538)
T KOG0252|consen 129 ALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGG 197 (538)
T ss_pred HHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhcc
Confidence 8666652111111345678899999999999999999999999888877 77766654444444444333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=162.76 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=127.2
Q ss_pred HhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHH
Q 008565 64 NVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILA 143 (561)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 143 (561)
+..+.+........+++.++..+|+++.|+++||+ |||+++++++.+.+++.++..++ ++++.+++.|++.|
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G 182 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSG 182 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHH
Confidence 55677788899999999999999999999999996 99999999999999999999999 79999999999999
Q ss_pred HhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 008565 144 VGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAI 220 (561)
Q Consensus 144 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 220 (561)
++.+........+++|.++++. |+.+..+ ......++.++|.+++++.. +||+.+++..+..++.++.
T Consensus 183 ~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 183 FFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999 77888888889999999887 7999999888776666555
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-15 Score=142.33 Aligned_cols=199 Identities=14% Similarity=0.042 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008565 45 MAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVS 124 (561)
Q Consensus 45 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~ 124 (561)
.............+..-++...|.+..+..++......+..+++..+|.++|++ |||+.+.+...+..+.-++-..+
T Consensus 87 wmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-- 163 (528)
T KOG0253|consen 87 WMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-- 163 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC--
Confidence 334444445555555666777888999999999999999999999999999997 99999998888877777777766
Q ss_pred cccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 008565 125 VIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWA 204 (561)
Q Consensus 125 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~ 204 (561)
+|+..+++.|.+.|+|.|+ .|...++-.|.-|... |....-.. ..+.+|.++...+.-.+..++|||
T Consensus 164 -----pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr 230 (528)
T KOG0253|consen 164 -----PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR 230 (528)
T ss_pred -----CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 7999999999999999998 7888899999999887 77766555 778899999888877777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCC
Q 008565 205 VGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGG 260 (561)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (561)
|..........++..+.++.....+..-.++++. .....+...++.+..++|...
T Consensus 231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~-kAletL~kiArmNg~qlplgv 285 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDY-KALETLHKIARMNGKQLPLGV 285 (528)
T ss_pred HHHHHHHhHHHHHHHHHhhcccCcchhhhcCChH-HHHHHHHHHHHhcCCCCCcce
Confidence 8887776554444444444332222222222222 223334445666666666543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-14 Score=138.57 Aligned_cols=334 Identities=16% Similarity=0.177 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008565 48 RFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIP 127 (561)
Q Consensus 48 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (561)
+...-++-+.+ .-+.+++|.|.+.+|.+.++..++..+..+++.+++.|+ |.++.+..++++.++|.++=...
T Consensus 25 R~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~----- 97 (395)
T COG2807 25 RPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG----- 97 (395)
T ss_pred chhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-----
Confidence 44444455555 446788999999999999999999999999999999997 99999999999998888776655
Q ss_pred ccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc-cchHH
Q 008565 128 LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV-GWAVG 206 (561)
Q Consensus 128 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~-g~~~~ 206 (561)
+...++.+-.+.|.|.+..+...++.+.+.||++ -+..+++|.+..++|+.+++.+...+.++. ||+..
T Consensus 98 ---~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~a 167 (395)
T COG2807 98 ---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGA 167 (395)
T ss_pred ---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHH
Confidence 5778888999999999999999999999999976 567889999999999999999998888776 79988
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccccccccccccc
Q 008565 207 FGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTI 286 (561)
Q Consensus 207 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 286 (561)
..+=+...+++++..+.-.. +++.+..+. + ..+
T Consensus 168 L~~WAl~allAl~~WlPq~~--r~~~~~~~~-------------------~-----------~~~--------------- 200 (395)
T COG2807 168 LGFWALLALLALLIWLPQAL--REQAASIAT-------------------K-----------LVS--------------- 200 (395)
T ss_pred HHHHHHHHHHHHHHHhhhcc--ccccccccc-------------------c-----------ccc---------------
Confidence 87777766666655443211 111110000 0 000
Q ss_pred ccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCc
Q 008565 287 ARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSN 366 (561)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (561)
..+.||. ++.....+-+-+.+..+|+.....+..+..+. ++.... +
T Consensus 201 -----------------------~~~vw~~--------~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G--~sa~~a-G 246 (395)
T COG2807 201 -----------------------VRKVWRS--------PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG--LSAAEA-G 246 (395)
T ss_pred -----------------------ccccccC--------chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CCHHHh-h
Confidence 1223321 11111122234566777777777777766643 222111 1
Q ss_pred eeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhh
Q 008565 367 FQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWW 446 (561)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (561)
... .+.++..+...+..|++.++. ...++......+++.++++.+.+... ...++|
T Consensus 247 ~ll---sl~~l~~~~~~ll~P~la~R~--~n~r~~~~~~~~~~l~G~~G~~~~P~-------------------~~~~lw 302 (395)
T COG2807 247 SLL---SLMQLAQLPTALLIPLLARRS--KNQRPLVVLALLLMLVGLVGLLLAPG-------------------QLPILW 302 (395)
T ss_pred hHH---HHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHHHHHhhh-------------------hHHHHH
Confidence 110 122333444455677766653 33345566677777777776666421 112222
Q ss_pred HHhHHHHHHHhhhhhhhhhHHHHhhhc-chhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccc
Q 008565 447 LLPQYLLVSICDVFGIVGLQELFYDQM-PEAMRSIGAAAYISIIGVGSFINTGVIEVVEAIT 507 (561)
Q Consensus 447 ~~~~~~l~g~g~~~~~~~~~~~~~~~~-p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~ 507 (561)
.++.|+|.+..+|....++.... .++..+.-+|+.+..+.+=..+||.++|++.|.+
T Consensus 303 ----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 303 ----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred ----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 47889999999998888886544 5567777888888888888999999999999855
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-14 Score=147.90 Aligned_cols=173 Identities=12% Similarity=0.139 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc---cCchHHHH-HHHHHHHHHH
Q 008565 41 IMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY---LGRFNTIL-LSSFIYFMGM 116 (561)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grk~~~~-~~~~~~~~~~ 116 (561)
....+..++.+..+..++..|+.+.+|+++..+|.+..+.-+.-++.-|+.|+++||. +||||..+ ++.+..+++.
T Consensus 15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence 3455566677777788999999999999999999999999999999999999999973 48877655 4556666666
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
++++.... .+.......+.+.-++..++..+...+..++.+|+.++.++ |.+..+....+.++|..+++.+...
T Consensus 95 ~llf~~p~-~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r~~~~~iG~~~~~~~~~p 168 (460)
T PRK11462 95 VLAYSTPD-LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWRFVLATAGGMLSTVLMMP 168 (460)
T ss_pred HHHHhCCC-CCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654410 01111133344455566777777778888999999875432 9999999999999988888777654
Q ss_pred hhccc-------cchHHHHHHHHHHHHHHH
Q 008565 197 LQDNV-------GWAVGFGVMAGALALALA 219 (561)
Q Consensus 197 l~~~~-------g~~~~f~~~~~~~~i~~~ 219 (561)
+.... ||+....+.++..++...
T Consensus 169 lv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 169 LVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 44332 455555444444444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-16 Score=153.59 Aligned_cols=181 Identities=20% Similarity=0.184 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhcc-CchHHHH-HHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYL-GRFNTIL-LSSFIY 112 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grk~~~~-~~~~~~ 112 (561)
|.+|.+++..++..+..|++..|.|.|+.|..|+|...+++..+.+..+...+++++||+|||++ |||...- +.++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999987 7776544 444444
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH-HHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF-GASAAV 191 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~igp 191 (561)
.++.+...... ..+.....+..+++|+...+.+-.......|..|++. -|++.|.......+ |+.++.
T Consensus 332 ~~~~~~~w~~~-----~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~~a~ 400 (448)
T COG2271 332 TASLVLYWLAP-----NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAALAG 400 (448)
T ss_pred HHHHHHHHcCC-----CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHHhcC
Confidence 45555555552 1356777777788888777666666778899999998 88899998888888 899999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 192 LVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
...|++.|.+||...|++..+.++++.+++....+
T Consensus 401 ~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 401 LPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred CcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888888777776665544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-13 Score=140.35 Aligned_cols=365 Identities=13% Similarity=0.092 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc---cCchHH-HHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY---LGRFNT-ILLSSFIY 112 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grk~~-~~~~~~~~ 112 (561)
-+-.....+..++.+..+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.++||. +||+|. ++++.+-+
T Consensus 14 ki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~ 93 (467)
T COG2211 14 KIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF 93 (467)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence 33444566777788888889999999999999999999999999999999999999999985 476665 55565667
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
++.+.+++.+.- ..........++.-++.+++......+..++.+|+.++.++ |.+..+......++|..+...
T Consensus 94 ~i~~~l~F~~p~-~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~l~s~R~~~~~~g~~l~~~ 167 (467)
T COG2211 94 AIVAVLLFITPD-FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RASLTSWRMVFASLGGLLVAV 167 (467)
T ss_pred HHHHHHHHcCCC-cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 777777766620 01123445556666788899888888889999999866543 999999999999999777666
Q ss_pred HHHHhhc-------cccchHHHHHHHHHHHHHHHHHHHhcccccc-cCCCCCchhHHHHHHHHHHhhcccccCCCCCCcc
Q 008565 193 VAIYLQD-------NVGWAVGFGVMAGALALALAIFLIGIKRYRK-QAPVGSPFTTVAQVFVATARKWRVSETHGGGRGI 264 (561)
Q Consensus 193 l~g~l~~-------~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (561)
+.+.+.. ..||+..-.+.+++.++++++.+...+|... ..+.++
T Consensus 168 ~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~---------------------------- 219 (467)
T COG2211 168 LFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT---------------------------- 219 (467)
T ss_pred HHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc----------------------------
Confidence 6655543 2355555544444444444433332222111 100000
Q ss_pred ccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008565 265 YHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCI 344 (561)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (561)
+...++.+.... . ...|..+..+...++......+
T Consensus 220 ------------------------~~~~~~~~~~~~--------------------~-~~Nrp~~~~l~~~l~~~~~~~i 254 (467)
T COG2211 220 ------------------------GVKLKLKDSFLL--------------------I-FKNRPLLLLLLMNLLLFIAFNI 254 (467)
T ss_pred ------------------------cccccHHHHHHH--------------------H-HccchHHHHHHHHHHHHHHHHH
Confidence 000000000000 0 0112222222222333322222
Q ss_pred HhhccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008565 345 LVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRV 424 (561)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 424 (561)
......++..+....++ ..............+.+.+++.+..++.++++...++.++..++.+.+.+..
T Consensus 255 ~~s~~~yy~~y~lg~~~-------l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~---- 323 (467)
T COG2211 255 RGSIMVYYVTYVLGDPE-------LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP---- 323 (467)
T ss_pred HhhhhheeEEEEcCChH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc----
Confidence 22222333332211111 1122222223333333355555555557777888889888888888777642
Q ss_pred HHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhc-------chhHHHHHHHHHHHHhhhhhhhhh
Q 008565 425 RTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQM-------PEAMRSIGAAAYISIIGVGSFINT 497 (561)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~-------p~~~rg~~~g~~~~~~~~g~~lg~ 497 (561)
+.+.+..+...++.++|.+...+..+++..|.. ..+..|...|.+.+.+-+|.+++.
T Consensus 324 ----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~ 387 (467)
T COG2211 324 ----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387 (467)
T ss_pred ----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 234556667778889999999999999888775 345678899999999999999999
Q ss_pred HHHhhhcccc
Q 008565 498 GVIEVVEAIT 507 (561)
Q Consensus 498 ~v~~~i~~~~ 507 (561)
++.+++++..
T Consensus 388 ~~~g~~L~~~ 397 (467)
T COG2211 388 FIPGWILGAI 397 (467)
T ss_pred HHHHHHHHHc
Confidence 9999998754
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-14 Score=147.37 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=125.9
Q ss_pred HHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHH
Q 008565 63 TNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYIL 142 (561)
Q Consensus 63 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 142 (561)
.++++....+.+.+.+++.++++++.+++|+|.||+ .-.+.+....++..+..++.... .+.+.+++.|++.
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------~s~~~~ialr~ll 144 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------HSFPGLIALRFLL 144 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHH
Confidence 367888889999999999999999999999999997 86666666655555544444444 6899999999999
Q ss_pred HHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhh------ccccchHHHHHHHHHHHH
Q 008565 143 AVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQ------DNVGWAVGFGVMAGALAL 216 (561)
Q Consensus 143 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~------~~~g~~~~f~~~~~~~~i 216 (561)
|+..+...|....+++.+|.+++ |+..+++++....+|.++|..++..+. ...|||+.|++.+++.++
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999988763 347899999999977766
Q ss_pred HHHHHHHhcc
Q 008565 217 ALAIFLIGIK 226 (561)
Q Consensus 217 ~~~~~~~~~~ 226 (561)
..++.++..|
T Consensus 219 ~gi~~f~~lp 228 (495)
T KOG2533|consen 219 LGIVVFFFLP 228 (495)
T ss_pred HHheEEEEec
Confidence 6555555444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-12 Score=139.78 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008565 51 YYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHY 130 (561)
Q Consensus 51 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (561)
.|++.. ....+++++|++..+.+++.++.. ....+.+++|+++||+ |||++++++.+++.++.++++++... ....
T Consensus 43 ~y~fsv-~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~-~i~~ 118 (591)
T PTZ00207 43 MYAFNL-ISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQE-VIEG 118 (591)
T ss_pred HHHHHH-HHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcc-cccC
Confidence 344443 344678899999999999887744 3446677889999997 99999999999999999988886210 0013
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH-HHHHHHHhhccccchHHHHH
Q 008565 131 RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA-AVLVAIYLQDNVGWAVGFGV 209 (561)
Q Consensus 131 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i-gp~l~g~l~~~~g~~~~f~~ 209 (561)
+.+.+++.|++.|+|.+...+.....+.++|| ++ |+++.|+......+|+.+ +++..+++. .+|+..|++
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~ 189 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFF 189 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHH
Confidence 68888999999999998888888889999997 55 999999999999999975 555555554 357777777
Q ss_pred HHHHHHHHHHHHH
Q 008565 210 MAGALALALAIFL 222 (561)
Q Consensus 210 ~~~~~~i~~~~~~ 222 (561)
.++..++..++.+
T Consensus 190 l~vl~~vv~ll~~ 202 (591)
T PTZ00207 190 LMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHHH
Confidence 6665544433333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-12 Score=133.03 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=72.1
Q ss_pred hhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhH
Q 008565 443 SIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLD 522 (561)
Q Consensus 443 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~ 522 (561)
+.+...+.-++.|+..+...+..-++..|+.|++..+...|++.+....++++||.+.+.+.+.++ +..
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-----------~~r 447 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-----------SQR 447 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------Cch
Confidence 344455566788999999999999999999999999999999999999999999999999988542 223
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008565 523 YFYWVLAGLSALNLCVFIWI 542 (561)
Q Consensus 523 ~~~~~~~~i~~~~~~~~~~~ 542 (561)
..+..+..+.++++++++.+
T Consensus 448 ~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 448 YGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred hHHHHHHHHHHHHHHHHhhc
Confidence 45666677777777776444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-13 Score=140.33 Aligned_cols=175 Identities=12% Similarity=0.009 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+..+..+...+.....++....++|.|+++++|+++.+.+.+.+...++..++.+++|+++||+ |||+.+..+.....+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC 294 (393)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3333343344444445555667899999999999999999988888888888999999999997 999988777655554
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
........ ++...+++.+++.+++.|...+..+++..|.+|+ + |+++.+.++...++|..++|.++
T Consensus 295 ~~~~~~~~-------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~~lg~~~g~~l~ 360 (393)
T PRK15011 295 FYAGMLMA-------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTSRVGWIIAGSLA 360 (393)
T ss_pred HHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHHHHHHHHHHHHH
Confidence 44433333 3556666777777777776667777788898874 4 88899998888999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
|++.+.+||+..|++..+..+++++..+..
T Consensus 361 G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 361 GIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988877777766655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=144.97 Aligned_cols=178 Identities=12% Similarity=0.042 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.+|.+.+..++....+++...|+|.|+++.+|++..++++..+...++..++.+++|+++||+ |||+.+........+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 4577778888888888889999999999999999999999999999999999999999999997 998877665444433
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH-HHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF-GASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~igp~l 193 (561)
+..++.+.. ..+.....+.+++.|++.............|.+|++. |+++.|+.+...++ |..++|.+
T Consensus 337 ~~~~~~~~~-----~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g~l~g~~~~~~~ 405 (467)
T PRK09556 337 IFTLGVYQH-----ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFAYLFGDSFAKVG 405 (467)
T ss_pred HHHHHHHHh-----cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHHHHHhHHHHhhh
Confidence 332222220 0244455566666775433333333456779999998 99999999998886 77999999
Q ss_pred HHHhhc------------cccchHHHHHHHHHHHHHHHHHHHh
Q 008565 194 AIYLQD------------NVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 194 ~g~l~~------------~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
.|++.| ..||+..|++..+..+++.+..+..
T Consensus 406 ~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 406 LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 5789999988877777766655544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=140.98 Aligned_cols=189 Identities=15% Similarity=0.155 Sum_probs=145.5
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCc-hHHH
Q 008565 28 ISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTN-VLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGR-FNTI 105 (561)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr-k~~~ 105 (561)
+..+.+||.+++..+.+++..+.+....+..-.|+++ +.+.+.+..|++++...++..++.+..|+.+.|. ++ |+.+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3345788999998899999888887777777788875 4678888899999999999999999999999997 75 7788
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccc-hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHH
Q 008565 106 LLSSFIYFMGMVLLSLAVSVIPLHY-RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIV 184 (561)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (561)
+.+.+..+++.++..... ...+ ..+.++++|++.|+|.+. ....-+++++....++ |.++++....+..
T Consensus 106 i~s~ii~~~g~llY~~l~---~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d------R~rA~a~~~~~~v 175 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALA---YVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED------RPRAFAATSGGFV 175 (488)
T ss_pred HHHHHHHHHHHHHHHHHH---hcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc------hHHHHHHhhhHHH
Confidence 888899998887773331 1113 678899999999999775 4777889999877777 9999988877777
Q ss_pred HHHHHHHHHHHHhhc----c---------ccchHHHHHHHHHHHHHHHHHHHhccc
Q 008565 185 FGASAAVLVAIYLQD----N---------VGWAVGFGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 185 lG~~igp~l~g~l~~----~---------~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (561)
+|.++||.+...+.. . .-|..+-|+.+++.++.++.+....+|
T Consensus 176 lg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 176 LGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 777777766654321 1 114556677777777777766665554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-13 Score=141.22 Aligned_cols=184 Identities=15% Similarity=0.092 Sum_probs=133.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHH
Q 008565 31 KGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSF 110 (561)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~ 110 (561)
.++++.........++..+.+|....++|.|+++.+|++......+.........++.++.|+++||+ ||||.+..+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~ 324 (438)
T PRK09952 246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGAL 324 (438)
T ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence 34444444444566777888899999999999999999987766666666777788899999999997 99999888766
Q ss_pred HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHH-HHHHHHHHHH
Q 008565 111 IYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWW-YLGIVFGASA 189 (561)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lG~~i 189 (561)
+.+++.+.+.... ...++...+++..++.+++.+...+..+++++|.+|.+. |+++.++. +.+..+|+.+
T Consensus 325 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~~~~~lgg~~ 395 (438)
T PRK09952 325 IGTLSAFPFFMAL---EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQVASVVGGGF 395 (438)
T ss_pred HHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHHHHHHHHHHH
Confidence 6555443332221 001223344445566677777777888899999999988 99999884 4455689999
Q ss_pred HHHHHHHhhccc--cchHHHHHHHHHHHHHHHHHHHh
Q 008565 190 AVLVAIYLQDNV--GWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 190 gp~l~g~l~~~~--g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+|.+.+++.+.. +|...+.+.++..+++.+..+..
T Consensus 396 ~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 396 TPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 999999997743 47887877777666666655443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-12 Score=140.13 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=132.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+++.....+...++..+.+|++..++|.|+++.+|++..+.++......++..++.+++|+++||+ |||+.+..+.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 344444444445667788999999999999988999988888888888888999999999999997 9999988877654
Q ss_pred HHHHHH-HHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVL-LSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 113 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.++.+. +.... ..+...+++++++.+++.+...+...++++|.+|++. |+++++..+....+++.++|
T Consensus 327 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~~g~~~p 395 (490)
T PRK10642 327 FVLAIPAFILIN-----SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVLVAGLTP 395 (490)
T ss_pred HHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHHHHHHHH
Confidence 443333 22221 1345667778888888777666777888999999999 99999985555666678899
Q ss_pred HHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHh
Q 008565 192 LVAIYLQDNVG-WAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 192 ~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
.+.+++.+..+ |+..+++..+..+++++..++.
T Consensus 396 ~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 396 TLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999887644 6666655555555555444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=137.37 Aligned_cols=171 Identities=11% Similarity=0.096 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.++.+.+..++.....+++..|+|.|+++.+|++..+.+.+.+.+.++..++.+++|+++||+ +||+.+.......++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 3455556666677777888899999999999999999999999999999999999999999997 999988877666555
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
...+.... ++...+.+..++.|++.+...+...+...|..|+ + +++..+......++|..++|.+.
T Consensus 284 ~~~~~~~~-------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~i~p~~~ 349 (394)
T PRK03699 284 LMYLFVNT-------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A------SPKLVNFILTCGTIGTMLTFVVT 349 (394)
T ss_pred HHHHHHHc-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C------CHHHHHHHHHhhhHHHHHHHHHH
Confidence 55444444 3455555566778887777777777777776653 3 55667888888899999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHH
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAI 220 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~ 220 (561)
|++.+..|++..+++.++..+++.+.
T Consensus 350 G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 350 SPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 99999999999998877766666543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=140.20 Aligned_cols=170 Identities=17% Similarity=0.090 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+..+......++....++....++|.|+++++|.+..+.+...+...++..++.++.|+++||+ |||+.+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3466666777778888888899999999888999999999999999999999999999999997 999987755444433
Q ss_pred HH-HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHH-HHHHHHHHHHHHHH
Q 008565 115 GM-VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNW-WYLGIVFGASAAVL 192 (561)
Q Consensus 115 ~~-~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~igp~ 192 (561)
.. ...... ....+...++...++.+++.+...+...+++.|.+|+++ |++++++ ++....+|..++|.
T Consensus 298 ~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~g~~~~p~ 367 (394)
T TIGR00883 298 LAVPLLMAL----LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGAIFGGFAPY 367 (394)
T ss_pred HHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHHHHhhHHHH
Confidence 32 222111 001245556666777888888888889999999999988 8889888 55667789999999
Q ss_pred HHHHhhcccc-chHHHHHHHHHHH
Q 008565 193 VAIYLQDNVG-WAVGFGVMAGALA 215 (561)
Q Consensus 193 l~g~l~~~~g-~~~~f~~~~~~~~ 215 (561)
++|++.++.| |+..++...+..+
T Consensus 368 ~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 368 IAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHcCcchhHHHHHHHHHH
Confidence 9999999888 8777666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-13 Score=140.45 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------hhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEP--------TATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLS 108 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~ 108 (561)
++.+++..++..........+++.|+++ .|.+ ....+...++..+...++.++.|+++||+ |||+++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~ 287 (418)
T TIGR00889 210 MAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLS 287 (418)
T ss_pred eeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence 3444445555555555566778888864 4544 35679999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHH-HHHHHHH
Q 008565 109 SFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWY-LGIVFGA 187 (561)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~ 187 (561)
.++..++..++.... ....+...+++..++.|++.+...+....++.|.+|++. |++++++.+ ....+|.
T Consensus 288 ~~~~~v~~~l~~~~~---~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~ 358 (418)
T TIGR00889 288 LVAWALRFGFFAYGD---PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGS 358 (418)
T ss_pred HHHHHHHHHHHHHcC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHH
Confidence 988887766665531 000124556678889999988888888899999999998 999999987 5678999
Q ss_pred HHHHHHHHHhhcc------ccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 188 SAAVLVAIYLQDN------VGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 188 ~igp~l~g~l~~~------~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
.+||.++|++.++ +||+..|.+.++..+++.+.++.+.+
T Consensus 359 ~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 359 LLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999887 46999998887776666655555544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-13 Score=137.29 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
..+.+....++..+.......+.+.|. +++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 283 (377)
T TIGR00890 206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG 283 (377)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence 344444445555555555666677776 46899998999999999999999999999999997 9999999888888887
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.++..+... .+...++...++.+++.+...+..++++.|.+|+++ |++.+++.+....+|..++|.+.|
T Consensus 284 ~~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~~~g 352 (377)
T TIGR00890 284 MAAMLFIPM-----LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGLIAS 352 (377)
T ss_pred HHHHHHccc-----chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHHHHH
Confidence 776665510 122234455667788888777888889999999998 999999999999999999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHH
Q 008565 196 YLQDNVGWAVGFGVMAGALALAL 218 (561)
Q Consensus 196 ~l~~~~g~~~~f~~~~~~~~i~~ 218 (561)
++.+..||++.|.+.++..++++
T Consensus 353 ~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 353 HALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999988877665543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=134.70 Aligned_cols=181 Identities=14% Similarity=0.013 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+..|.+....++...+++++..++|.|+++ +|.+..+.+...+.+.++..++.++.|+++||+ |||+.+..+..+.++
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 345556666667778888999999999986 799999999999999999999999999999997 999998888777777
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcc-cCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFD-ERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+..++.... .+...+ ...+.|++.+...+.......+.++ +++ |++.++..+...+++..++|.+
T Consensus 283 ~~~~~~~~~------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~~~~gp~~ 348 (393)
T PRK09705 283 GFCGFIWLP------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQGIGFIIAGLAPWF 348 (393)
T ss_pred HHHHHHHcc------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 665544331 122222 2245677777777877777777775 455 8999999999999999999999
Q ss_pred HHHhhcccc-chHHHHHHHHHHHHHHHHHHHhccccccc
Q 008565 194 AIYLQDNVG-WAVGFGVMAGALALALAIFLIGIKRYRKQ 231 (561)
Q Consensus 194 ~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 231 (561)
.|++.|..| |...|++.++..++.++..+...++.+++
T Consensus 349 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 349 SGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999876 78888888877777777766666554443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=136.53 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008565 45 MAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVS 124 (561)
Q Consensus 45 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~ 124 (561)
.+..+.++....+++.|+.+ .|. .+.++..+.+.++..++.++.|+++||+ ||||.+..+..+..++..+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-- 299 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh--
Confidence 34455666777888888864 465 3456677788888889999999999997 99999988888777777666665
Q ss_pred cccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 008565 125 VIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWA 204 (561)
Q Consensus 125 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~ 204 (561)
++.+.+++..++.|++.+...+.....+.|.+|+++ |++++++++...++|..++|.+.|++.+..||+
T Consensus 300 -----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 368 (399)
T PRK05122 300 -----PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYP 368 (399)
T ss_pred -----ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 466667778889999988888887888889999888 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Q 008565 205 VGFGVMAGALALALAIFLIGIKRYR 229 (561)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~~~~~~~ 229 (561)
..|++.++..+++.+..+..+++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 369 SIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999888877777766666554433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.3e-11 Score=117.91 Aligned_cols=335 Identities=15% Similarity=0.133 Sum_probs=197.4
Q ss_pred HHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccC-----chHH-HHHHHHHHHHHHHHHHHhhhcccc-------c
Q 008565 63 TNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLG-----RFNT-ILLSSFIYFMGMVLLSLAVSVIPL-------H 129 (561)
Q Consensus 63 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-----rk~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~ 129 (561)
..+++++..-.+.+++...+.+. ..+..|+.||+. + ||.. +..|..++..+..+..++...+.. +
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 35688888888888888888666 588889999997 6 5655 444666666666666665433222 1
Q ss_pred chhH--HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHH
Q 008565 130 YRKA--VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGF 207 (561)
Q Consensus 130 ~~~~--~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f 207 (561)
...+ ...+...+.|+|.+....+..++++|..|+++ |+++.++.+.+.-+|.+++..+.+.+.+.++..-..
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~ 158 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI 158 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence 2222 23344456788888888888999999999999 999999999999999999999999887766533222
Q ss_pred HHHH----HHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccc
Q 008565 208 GVMA----GALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSK 283 (561)
Q Consensus 208 ~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 283 (561)
-+.- +...+.++..+-..++.++..+.. +
T Consensus 159 ~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~---------------------------------~-------------- 191 (403)
T PF03209_consen 159 QVIQGVALIALLLNLIALWGQEPRRSRRAAAA---------------------------------E-------------- 191 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccccCC---------------------------------C--------------
Confidence 2222 222222222222222111111000 0
Q ss_pred cccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccC
Q 008565 284 RTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSI 363 (561)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (561)
.++..+.+..... ..+ .+.|+.+ ..+.+....+++...-..+| .. +
T Consensus 192 -----~~~~~f~~a~~~~----------------~~~--~~a~~f~--~fl~l~t~a~~~QD~iLEPy----gg----~- 237 (403)
T PF03209_consen 192 -----RPRPPFREAWRQV----------------WAS--PQARRFF--VFLFLGTLAFFMQDVILEPY----GG----E- 237 (403)
T ss_pred -----CCCccHHHHHHHH----------------HhC--CChhHHH--HHHHHHHHHHHhhHHHcCCc----hh----H-
Confidence 0000111111100 000 0112211 11222223322322211111 10 0
Q ss_pred CCceeecc---ccccchhhHHHHHHHHHhhcC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 008565 364 GSNFQVPP---ASLQSLVGLSILVAVPVITGH-RSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAI 439 (561)
Q Consensus 364 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (561)
-+.++. ..+......+.++...+..+. .++..+.+...+|.....+++..+....
T Consensus 238 --Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~------------------- 296 (403)
T PF03209_consen 238 --VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG------------------- 296 (403)
T ss_pred --HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 111221 123333334444433332221 1234444555667777777766555432
Q ss_pred ccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccc
Q 008565 440 VPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAIT 507 (561)
Q Consensus 440 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~ 507 (561)
...+.+.+....++.|++.+.......+...++.+++..|+.+|.+...+.++..++.+..+.+.|..
T Consensus 297 ~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 297 PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11245677888899999999999999999999999999999999999999999999999999888754
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=134.65 Aligned_cols=166 Identities=14% Similarity=0.029 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 008565 43 VEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLA 122 (561)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~ 122 (561)
..++.....+....++|.|+++++|.++.+.+++.+.......++.+++|+++||+ |||+.+.++.....+........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 285 (375)
T TIGR00899 207 ACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD 285 (375)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH
Confidence 33344444445567789999889999999999988888777788899999999997 99999888766655554444444
Q ss_pred hhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008565 123 VSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVG 202 (561)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g 202 (561)
++.+.+++.+++.+++.+...+....+..|..|+ + +++++++++...++|..++|.++|++.+..|
T Consensus 286 -------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g 351 (375)
T TIGR00899 286 -------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGSVGGILAERWS 351 (375)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566666777888888887778888888898875 3 6689999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 008565 203 WAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 203 ~~~~f~~~~~~~~i~~~~~~~ 223 (561)
|+..|++.++..+++.+....
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 352 YHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred chhHHHHHHHHHHHHHHHHhe
Confidence 999998888877776665443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=134.49 Aligned_cols=169 Identities=11% Similarity=-0.032 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|.++......++...+.+...++.|.|+++ +|.++.+.|.+.+...++..++.++.|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 456666667777778888888999999975 899999999999999999999999999999997 999999999999998
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHH-HHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWY-LGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~igp~l 193 (561)
...+..+. ++.+.+++..++.|++.+...+....++.+. |+++ |+++.++++ ....+|..++|.+
T Consensus 283 ~~~~~~~~-------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 283 RWAIIGAI-------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred HHHHHHhH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777 6888888899999999999999999999987 8777 888889876 4678999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHH
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAI 220 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~ 220 (561)
+|++.|+.|+ ..|++.++..+++++.
T Consensus 349 ~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 349 AGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999986 6677777666655444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=136.24 Aligned_cols=173 Identities=14% Similarity=-0.021 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
.+.+....++.....+....++|.|+++ .|++..+.+...+...++..++.++.|+++||+ |||+.+..+.....++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL 299 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 3334444455556677788889999875 799999999999999999999999999999997 99999888766666665
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
+.+... .+...+.+..++.|++.+...+...+++.|.+|+++ |+++.++.+....+|..+||.+.|+
T Consensus 300 ~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~ 366 (406)
T PRK11551 300 AALAAA-------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAGPLLAGQ 366 (406)
T ss_pred HHHHhc-------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHHhhhHhh
Confidence 555544 355555566677788777777888899999999998 9999999999999999999999999
Q ss_pred hhcccc-chHHHHHHHHHHHHHHHHHHHh
Q 008565 197 LQDNVG-WAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 197 l~~~~g-~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+.+..+ |...++......+++.+..+..
T Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 367 LLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 988654 5555655555555555544443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=135.76 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh---hhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTA---TAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 40 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
++...++.......+.++++.|..+..+.... ..+.+.++..++..++.+..|+++||+ |||+.+..+..+..++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 302 (408)
T PRK09874 224 LFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLL 302 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHH
Confidence 33333444455556677888888765442221 245666677788888999999999997 99999998888777766
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
+...+. ++.+.+++.+++.|++.+...+...+++.+..|+++ |++.++.++....+|..+||.++|+
T Consensus 303 ~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~gp~~~G~ 369 (408)
T PRK09874 303 IPMSFV-------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNVTGPLMGAA 369 (408)
T ss_pred HHHHHh-------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHHhhHHHHHH
Confidence 666555 466677788889999999888998899999888888 9999999999999999999999999
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 197 LQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 197 l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+.+..||+..|++.+++.+++.+..+..
T Consensus 370 l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 370 ISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877776655543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-13 Score=138.89 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 008565 45 MAQRFAYYGLAGNLIQYLTNVL---NEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSL 121 (561)
Q Consensus 45 ~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~ 121 (561)
++....+.....++|.|+.+.+ +.+..+.+.+.++..++..++.+++|+++||+ |||+.+..+..+..++.+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 233 IGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHh
Confidence 3333444445556777776543 56667789999999999999999999999997 9999999888888887777777
Q ss_pred hhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHH-HHHHHHHHHHHHHHHHHHhhcc
Q 008565 122 AVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNW-WYLGIVFGASAAVLVAIYLQDN 200 (561)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~igp~l~g~l~~~ 200 (561)
. ++++.+++.+++.+++.+...+....++.|.+|++. |++..+. ++....+|.+++|.+.|++.|.
T Consensus 312 ~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~ 378 (420)
T PRK09528 312 A-------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDS 378 (420)
T ss_pred c-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 577777888888998887777777788999999887 7777665 6778899999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 008565 201 VGWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 201 ~g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
.||+..|.+.++..++..+..+.
T Consensus 379 ~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 379 IGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred hCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999877766655544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=137.79 Aligned_cols=163 Identities=12% Similarity=-0.027 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008565 51 YYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHY 130 (561)
Q Consensus 51 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (561)
..+...++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+..+.+++.+++.+. +
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~-------~ 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM-------P 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc-------c
Confidence 346677899999888999999999999999999999999999999996 88888888877777776666555 4
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Q 008565 131 RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVM 210 (561)
Q Consensus 131 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~ 210 (561)
+.....+..++.|++.+...+...+++.|.+|++. |++++++++...++|..+||.+.|++.+..|++..+++.
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~ 384 (417)
T PRK10489 311 MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASAS 384 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHH
Confidence 56666677778888887766777889999999988 999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHhccc
Q 008565 211 AGALALALAIFLIGIKR 227 (561)
Q Consensus 211 ~~~~~i~~~~~~~~~~~ 227 (561)
++..++..++.....++
T Consensus 385 ~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 385 GFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 76655544444444343
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-12 Score=142.39 Aligned_cols=135 Identities=12% Similarity=0.019 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhh
Q 008565 75 QDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQ 154 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~ 154 (561)
....+..++..++.+++|+++||+ |||+++++++++.+++++++.+. .+...+++.+++.+++.+...+...
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~-------~s~~~ll~~~~l~g~~~~~~~~~~~ 670 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG-------NSESAMIALLCLFGGLSIAAWNALD 670 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566688899999999999997 99999999999988888887777 4555666777777877777788899
Q ss_pred hHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 155 TFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
++++|++|++. |++++|+.+....+|+++||.+++.+.+. +...+|++.++..+++.++..++
T Consensus 671 a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 671 VLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999 99999999999999999999999988764 45667777777666665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-12 Score=130.15 Aligned_cols=172 Identities=26% Similarity=0.331 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchH-HHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFN-TILLSSFIYFMG 115 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~-~~~~~~~~~~~~ 115 (561)
.+......++..........+.+.|..+.+|.+..+.++..+...++..++.++.|+++||+ |||+ .+..+..+..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence 34444556666677777888999999888899999999999999999999999999999997 9999 999998888888
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.+..... ++.....+..++.+++.+...+...+++.|.+|+++ |++.++..+...++|..++|.+.+
T Consensus 256 ~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~i~g 322 (352)
T cd06174 256 LLLLALA-------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTFGSLGGALGPLLAG 322 (352)
T ss_pred HHHHHHh-------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777 467778888999999999999999999999999988 999999999999999999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHH
Q 008565 196 YLQDNVGWAVGFGVMAGALALALAIFL 222 (561)
Q Consensus 196 ~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (561)
.+.+..+|+..|++.++..+++.+..+
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 323 LLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999989999999988887777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-12 Score=135.40 Aligned_cols=180 Identities=13% Similarity=0.020 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccC--chHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLG--RFNTILLSSFIY 112 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G--rk~~~~~~~~~~ 112 (561)
+.+|.+....++....++++..++|.|+.+++|++..+.+...+.+.++..++.+++|+++||+.+ |++......+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 346666666667777777888999999988899999999999999999999999999999999622 222222211111
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.+....+.... . .+.....+..+..|++.............|.+|+++ |+++.|+.+...++|..++|.
T Consensus 323 ~~~~~~~~~~~----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~p~ 391 (434)
T PRK11663 323 LLSVGSLWLMP----F-ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGLFAYLGAALSGY 391 (434)
T ss_pred HHHHHHHHHcc----c-ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHHHHHHHHHHhcc
Confidence 11211111110 0 122223233333443322222233456789898888 999999999999999999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
+.|++.+..||+..|++.+++.+++.+..+...
T Consensus 392 ~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 392 PLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred cHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888877766655554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=132.68 Aligned_cols=177 Identities=12% Similarity=-0.015 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHH-HHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNT-ILLSSFIYF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~-~~~~~~~~~ 113 (561)
|..+..+...++.....+....++|.|+++.+|.+..+.+++.+...++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 4566677777888888888999999999999999999999999999999999999999999997 98861 111111111
Q ss_pred HH---HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHH
Q 008565 114 MG---MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAA 190 (561)
Q Consensus 114 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig 190 (561)
++ ........ ....+.........+.+.+.+ ..+...+++.|.+|+++ |++++++.+...++|..++
T Consensus 294 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~~ 363 (399)
T TIGR00893 294 IAGLVLSLLMFAT---NYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLINSLGNLGGIVG 363 (399)
T ss_pred HHHHHHHHHHHHh---ccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHHHHHHHHhhhhh
Confidence 11 11111110 001123333333333344444 67888999999999998 9999999999999999999
Q ss_pred HHHHHHhhcccc-chHHHHHHHHHHHHHHHHHH
Q 008565 191 VLVAIYLQDNVG-WAVGFGVMAGALALALAIFL 222 (561)
Q Consensus 191 p~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~ 222 (561)
|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus 364 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 364 PIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999988 99999888777666655543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-12 Score=131.61 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHH-HHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTIL-LSSFIYF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~-~~~~~~~ 113 (561)
|.++...+..++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 34666666777888888999999999985 5899999999999999999999999999999997 9888764 3333333
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++.+.+..... ...++.+..++..++.|++.+...+ ..+.+.|..| ++ |++++|+.+...++|..++|.+
T Consensus 300 ~~~~~l~~~~~--~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g~~~g~~~~~~~lg~~~gp~i 369 (402)
T TIGR00897 300 IFTLALYYIPQ--HFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KGAAMSVLNLSAGLSAFLAPAI 369 (402)
T ss_pred HHHHHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222100 0012445555667777887776544 3456666544 56 9999999999999999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+|.+.+..||...|++.++..+++.+...+.
T Consensus 370 ~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 370 AVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888777766655443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-12 Score=135.13 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhcc-CchHHH-HHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYL-GRFNTI-LLSSFIY 112 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~-Grk~~~-~~~~~~~ 112 (561)
+.+|...+..++.....++...++|.|+++..|++..+++.....+.++..++.+++|+++||+. |||+.. .....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 45666777777777888889999999999989999999999999999999999999999999961 334332 2222223
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH-HH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA-AV 191 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i-gp 191 (561)
.++.+.+.+.. ..+.....+..++.|.+..........+..|.+|++. |++++|+.+...++|+.+ +|
T Consensus 333 ~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~~g~ 401 (452)
T PRK11273 333 TIATIVYWLNP-----AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAAS 401 (452)
T ss_pred HHHHHHHHHhc-----ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHHHHHHHHHHHhhh
Confidence 33333222220 0233333344444444332222333456789999998 999999998888888654 89
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 192 LVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
.+.|++.|..||+..|++.++..+++++.....
T Consensus 402 ~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 402 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887776666555543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.1e-12 Score=133.74 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHH-HH
Q 008565 41 IMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMV-LL 119 (561)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~-~~ 119 (561)
+...++....++.+..++|.|+++.+|++..+.++......++..++.+++|+++||+ |||+.+..+..+.++..+ ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 4445556677888899999999988999999999998899999999999999999997 999988776544332221 11
Q ss_pred HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHH-HHHHHHHHHHHHHHHhh
Q 008565 120 SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYL-GIVFGASAAVLVAIYLQ 198 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~lG~~igp~l~g~l~ 198 (561)
.... ..++........++.+++.+...+...+++.|.+|++. |++++++.+. +..+++.++|.+.|++.
T Consensus 323 ~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g~~~p~~~g~i~ 392 (434)
T PRK15075 323 SWLV----AAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFGGFTPAISTWLI 392 (434)
T ss_pred HHHH----cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence 1110 01233333344455566666666777788999999998 9999998544 44456778999999999
Q ss_pred ccccch
Q 008565 199 DNVGWA 204 (561)
Q Consensus 199 ~~~g~~ 204 (561)
+..|+.
T Consensus 393 ~~~g~~ 398 (434)
T PRK15075 393 HVTGDK 398 (434)
T ss_pred HhcCCc
Confidence 988864
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-11 Score=126.97 Aligned_cols=173 Identities=10% Similarity=-0.024 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
.+......++.....++...+++.|+++..|.+..+.+++.+...++..++.++.|+++||+ |||+.. .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence 33344444555566666778888999888999999999999999999999999999999997 987654 4444433333
Q ss_pred HHH-HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLL-SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 117 ~~~-~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
... ... ++...+++..++.|++.+...+...+.+.+..| ++ |+++++.++....+|..+||.++|
T Consensus 285 ~~l~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~G~~~~G 350 (390)
T PRK03545 285 LLLLPAA-------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIFNIGIGAGALLGN 350 (390)
T ss_pred HHHHHHh-------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 333 356666777788888887777777788888766 45 889999999999999999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 196 YLQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 196 ~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
++.+..|++..|++.+.+.+++.+......
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 351 QVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999888877777665544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-12 Score=130.27 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008565 45 MAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVS 124 (561)
Q Consensus 45 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~ 124 (561)
++....+..+..+.+.|+++ .|++ +.+...+.+.++..++.++.|++.||+ ||||.+..+..+..++.++..+.
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-- 299 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA-- 299 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc--
Confidence 33445666677888888865 4655 356666777778889999999999997 99999998888887777766665
Q ss_pred cccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 008565 125 VIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWA 204 (561)
Q Consensus 125 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~ 204 (561)
++....++..++.|++.+...+...+.+.|.+|+++ |++++++++....+|..++|.+.|++.+..||+
T Consensus 300 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~ 368 (392)
T PRK12382 300 -----PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYP 368 (392)
T ss_pred -----ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 456666778888999988878888888999999988 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008565 205 VGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~~ 224 (561)
..|.+.++..+++.+..+..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 369 SVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999888777776665543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-11 Score=121.47 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=110.8
Q ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhH--HHH
Q 008565 59 IQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKA--VFF 136 (561)
Q Consensus 59 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 136 (561)
..|..+.+| +...+-|...+|++.+......+-|+.||+ |-|.+.+++..+..+|..+=..+..+.. .+..+ ...
T Consensus 68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~p~v-~~~f~~~l~~ 144 (480)
T KOG2563|consen 68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSLPFV-PPLFRRPLTH 144 (480)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccCccc-cccchhhhhH
Confidence 356666677 777788999999999999999999999997 9999999999999999988777643200 01222 455
Q ss_pred HHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc------ccchH--HHH
Q 008565 137 TALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN------VGWAV--GFG 208 (561)
Q Consensus 137 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~------~g~~~--~f~ 208 (561)
.+..+.+.+.-.......-+.+-+|++++ |+.+..+-.++..+|..+|.++...+..+ ..|.. .|+
T Consensus 145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~ 218 (480)
T KOG2563|consen 145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFL 218 (480)
T ss_pred HhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHH
Confidence 66666666665555555567788899999 99999887777777777777666655433 33544 344
Q ss_pred HHHHHHHHHHHHHHHhc
Q 008565 209 VMAGALALALAIFLIGI 225 (561)
Q Consensus 209 ~~~~~~~i~~~~~~~~~ 225 (561)
...+...+.+......+
T Consensus 219 ~~~~l~~l~l~l~~~~~ 235 (480)
T KOG2563|consen 219 GVECLAALLLALVLFVF 235 (480)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44444444443333333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=113.12 Aligned_cols=134 Identities=17% Similarity=0.282 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhH
Q 008565 77 VNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTF 156 (561)
Q Consensus 77 ~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~ 156 (561)
.+.+.++..++.++.|+++||+ |||+.+..+.....++.+..... .+.+.+.+.+++.|++.+...+...++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~ 75 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAAL 75 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455677888999999999997 99999999988888888777776 577788888999999999888999999
Q ss_pred hhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 157 AADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+.|.+|+++ |++..+..+....+|..++|.+.+++.+..+|++.|++..+..++..+..+..
T Consensus 76 ~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 76 IADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999998 99999999999999999999999999998899999988877666665555444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-11 Score=129.06 Aligned_cols=171 Identities=15% Similarity=0.071 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 008565 43 VEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLA 122 (561)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~ 122 (561)
..++....+|++..|+|.|+++++|.+..+.+...++..++..++.++.|+++||+ |||+.+.++.++.++..+.....
T Consensus 251 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 251 FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 33445778889999999999988999999999988888888889999999999997 99998877655443333222211
Q ss_pred hhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHH-HHHHHHHHHHHHhhccc
Q 008565 123 VSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIV-FGASAAVLVAIYLQDNV 201 (561)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-lG~~igp~l~g~l~~~~ 201 (561)
. ....+....+....+..++.+...+...++.+|.+|++. |++++|+.+...+ +++...|.+.+++.+ .
T Consensus 330 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~ 399 (432)
T PRK10406 330 L---QNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGSAEYVALSLKS-I 399 (432)
T ss_pred H---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhHHHHHHHHHHH-h
Confidence 0 000122222222222223333334556788999999999 9999999776554 335558888886644 4
Q ss_pred c-chHHHHHHHHHHHHHHHHHHHh
Q 008565 202 G-WAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 202 g-~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
| |...+++.++..+++.+..++.
T Consensus 400 g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 400 GMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 5 5556666555555555554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=129.39 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008565 41 IMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLS 120 (561)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~ 120 (561)
+...++.+...+....++|.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+.....+..+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 322 (405)
T TIGR00891 244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVF 322 (405)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHH
Confidence 3334444555556778899999999999999999999999999999999999999997 999998887665533322222
Q ss_pred HhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008565 121 LAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN 200 (561)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~ 200 (561)
... .+...+.+..++.+++.+...+..++++.|.+|+++ |++++|+.+...++|..++|.+.|++.++
T Consensus 323 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 323 AIG------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred HhC------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 344555555566666666667788899999999998 99999999999999999999999999999
Q ss_pred cc-chHHHHH
Q 008565 201 VG-WAVGFGV 209 (561)
Q Consensus 201 ~g-~~~~f~~ 209 (561)
.| |+..+..
T Consensus 391 ~g~~~~~~~~ 400 (405)
T TIGR00891 391 LDEYGTALAS 400 (405)
T ss_pred ccccchhHHh
Confidence 88 8766644
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=128.75 Aligned_cols=185 Identities=13% Similarity=0.092 Sum_probs=153.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCch--HHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRF--NTILLSSF 110 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk--~~~~~~~~ 110 (561)
+.|.+...++..++-+-+...+......|.++++|++..+...+..+..+.++++..++|++.||+ |.| ++++.+++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 345676777788888888889999999999999999999999999999999999999999999997 988 88888877
Q ss_pred HHHHHHHHHHHhhhc-ccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 111 IYFMGMVLLSLAVSV-IPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 111 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
+..+..+...+...+ .....+.+.+++.-++.|+..|..++..-++.+|+.|+++ .+..+|++.+.....+.+
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~l 431 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWL 431 (477)
T ss_pred HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHH
Confidence 775443333330000 0111466778888889999999999999999999999998 889999999999999999
Q ss_pred HHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHh
Q 008565 190 AVLVAIYLQDNVG-WAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 190 gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
||.+.|.+.+..| .|+.+....++.++++++++..
T Consensus 432 GPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 432 GPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999998877 8888888888777777776554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=128.68 Aligned_cols=180 Identities=16% Similarity=0.123 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.+|.+....++.....+++..++|.|+++..|+++.+.++....+.++..++.+++|+++||+ ++++....+.....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence 4566666667777778888999999999998899999999999999999999999999999997 754322223222221
Q ss_pred H---HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHH-HHH
Q 008565 115 G---MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGA-SAA 190 (561)
Q Consensus 115 ~---~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~-~ig 190 (561)
. .+.+... ...+........++.|++.............|.+|++. |+++.|+.+...++|+ .++
T Consensus 330 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~gg~~~g 398 (438)
T TIGR00712 330 VTIAVIVYWMN-----PAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAA 398 (438)
T ss_pred HHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhchHHHhhhhhhc
Confidence 1 1111111 01223333333444444432222222346779999888 9999999988888764 689
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
|.+.|++.+..||...|++.++..+++.+..+...+
T Consensus 399 p~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 399 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred chhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998887777666666555444
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-11 Score=124.19 Aligned_cols=168 Identities=11% Similarity=-0.030 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|.++.+....++....+.....+++.|+. +.|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+..++.+..+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 34555555566666666677788899996 5899999999999988888999999999999997 999999998888888
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHH-HHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWY-LGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~igp~l 193 (561)
+.+++... ++.+.+++..++.|++.+...+....++.+. ++++ +++..+..+ ....+|..+||.+
T Consensus 283 ~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 283 RWGLMGST-------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred HHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666 5777788888999999888778777777775 4444 677788765 5567788999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHH
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALA 219 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~ 219 (561)
+|++.|..|+ ..|+..++..+++++
T Consensus 349 ~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 349 SGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 9999999887 466655555554443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=121.35 Aligned_cols=139 Identities=14% Similarity=0.196 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhH
Q 008565 54 LAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKA 133 (561)
Q Consensus 54 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (561)
-..-+..+...+.++..++..++.+.++..+.+.+.++|++.||.+|-|...++-+.+..+|-+++... .-.+..+
T Consensus 62 ~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~G----gi~~aFw 137 (459)
T KOG4686|consen 62 APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAG----GISHAFW 137 (459)
T ss_pred CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhc----hHHHHHH
Confidence 344567778888888888899999999999999999999999998887766555555556666655543 1126788
Q ss_pred HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008565 134 VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVG 202 (561)
Q Consensus 134 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g 202 (561)
.+.++|++.|+|.--...+...++..+|..++ .+..+|+......+|+..--.+.+++.+..+
T Consensus 138 ~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 138 TMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred HHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 99999999999976666777889999999988 8899999999999999887778888877543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-11 Score=119.97 Aligned_cols=177 Identities=15% Similarity=0.123 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.++......++...+.|...+|+.+++++..|+|....+++...+.++..++..++|+++|| +.|+++.....+.++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 357777788888889999999999999999999999999999999999999999999999998 788888877777777
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
....+.+.. .+.+...+..++.|++........+.-.++.. ++. +..+.+++....|+|..+|..++
T Consensus 289 ~~l~l~~~~------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl~~aa~nlgia~GA~lG 355 (394)
T COG2814 289 ALLALTFTG------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSLNVAAFNLGIALGAALG 355 (394)
T ss_pred HHHHHHHhc------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666552 35555556666666665543333334444422 344 88899999999999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
|.+.|++|+....++.++..++++.+.+...+
T Consensus 356 G~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 356 GLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998888887766554
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-11 Score=123.35 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008565 47 QRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVI 126 (561)
Q Consensus 47 ~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~ 126 (561)
....+.....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+..+..++..... .
T Consensus 212 ~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~---- 284 (381)
T PRK03633 212 SGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S---- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h----
Confidence 334444555778999875 699999999999999999999999999999997 999998888777666554332 1
Q ss_pred cccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Q 008565 127 PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVG 206 (561)
Q Consensus 127 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~ 206 (561)
.. .......+.+++.+...|...+.+.|..|+++ ++...+..+...++|..+||.++|++.|+.||++.
T Consensus 285 ----~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~ 353 (381)
T PRK03633 285 ----QA-AMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL 353 (381)
T ss_pred ----hH-HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 11 22345566677666677888888999998876 77778888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008565 207 FGVMAGALALALAIFL 222 (561)
Q Consensus 207 f~~~~~~~~i~~~~~~ 222 (561)
|.+.+...++..+..+
T Consensus 354 f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 354 FIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9887776665544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-11 Score=129.55 Aligned_cols=150 Identities=14% Similarity=0.094 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchh
Q 008565 53 GLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRK 132 (561)
Q Consensus 53 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (561)
....++|.|+++++|.+..+.+++.+...++..++.+++|+++||+ |||+.+..+..+..++.++..... ..+.
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 366 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG-----GANV 366 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc-----ccHH
Confidence 4567899999889999999999999999999999999999999997 999998887666555544333321 1233
Q ss_pred HHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008565 133 AVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAG 212 (561)
Q Consensus 133 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~ 212 (561)
....+..++.+.......+..++++.|.+|+++ |++.+++.+...++|..+||.++|++.+.+||+..+.+.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 333333344333333345667788999999988 99999999999999999999999999999999888765554
Q ss_pred HH
Q 008565 213 AL 214 (561)
Q Consensus 213 ~~ 214 (561)
..
T Consensus 441 ~~ 442 (496)
T PRK03893 441 SL 442 (496)
T ss_pred HH
Confidence 33
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=128.43 Aligned_cols=172 Identities=11% Similarity=-0.024 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc-cCchHHHHHHH--HH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY-LGRFNTILLSS--FI 111 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~-~Grk~~~~~~~--~~ 111 (561)
|.++..+...++..+.++....+++.|+++ +|++..+.+++.++..++..++.+++|+++||. .++|+...++. ++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 446666667777778888888999999865 799999999999999999999999999999983 13444343332 22
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
..++.+++... ++.+.+++.+++.|++.+...+...+++.|.+|+++ +++.+++++...++|..+||
T Consensus 320 ~~l~~ll~~~~-------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~lg~~igp 386 (455)
T TIGR00892 320 NGLTHLLCALA-------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECCAVLIGP 386 (455)
T ss_pred HHHHHHHHHHh-------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHHHHHccc
Confidence 23333333344 467777788889999999888999999999999988 99999999999999999999
Q ss_pred HHHHHhhccc-cchHHHHHHHHHHHHHHHH
Q 008565 192 LVAIYLQDNV-GWAVGFGVMAGALALALAI 220 (561)
Q Consensus 192 ~l~g~l~~~~-g~~~~f~~~~~~~~i~~~~ 220 (561)
.++|++.+.. +|+..|++.++..+++.+.
T Consensus 387 ~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 387 PLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred cceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999877 4999998888766665543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=125.37 Aligned_cols=179 Identities=9% Similarity=0.037 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHH-HHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVN-NWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~-~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
|.+....++.....+....+.+.|+.+++|++..+.+++.. ...++..++.+++|+++||+ |||+.+.++.++.++..
T Consensus 225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 33333344555666666778888988889999999999875 55678999999999999997 99998777665555444
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
+.+.... ...++...+.+..++..++.|...+...++..+..+++. +++.+++.+...++|..+++.+.|+
T Consensus 304 l~~~~l~---~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~~~~~~~~G~ 374 (491)
T PRK11010 304 AGYWLLS---ITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVGRVYVGPVAGW 374 (491)
T ss_pred HHHHHHH---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211 001233344445555555555556777888999999988 8889999999999999989899999
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 197 LQDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 197 l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
+.+..||+..|.+.+++.+++++.....++
T Consensus 375 l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 375 FVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998888888887776665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=121.74 Aligned_cols=340 Identities=15% Similarity=0.134 Sum_probs=208.4
Q ss_pred HHHHHHHHHhcCCChhh-hhHHHHHH----HHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008565 56 GNLIQYLTNVLNEPTAT-AAQDVNNW----VGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHY 130 (561)
Q Consensus 56 ~~l~~yl~~~lg~s~~~-~~~~~~~~----~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (561)
.....+.....+.+... .+...... .+...+..++-|.++||+ |||..+.+.++.+.+..+...+.
T Consensus 42 ~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~-------- 112 (463)
T KOG2816|consen 42 TNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ-------- 112 (463)
T ss_pred hhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH--------
Confidence 44555555555443333 23333333 567788899999999997 99999999999888888887776
Q ss_pred hhHHHHHHHHHHHHh--ccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Q 008565 131 RKAVFFTALYILAVG--EGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFG 208 (561)
Q Consensus 131 ~~~~l~~~~~l~g~g--~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~ 208 (561)
.++.+. +.++. .+...+...++++|...+++ |...+++.+.....+..++|.+++.+.+..|....|.
T Consensus 113 ~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ 182 (463)
T KOG2816|consen 113 GYWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFL 182 (463)
T ss_pred HHHHhh----hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHH
Confidence 333332 33322 23455777889999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccccccccccccccc
Q 008565 209 VMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIAR 288 (561)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 288 (561)
+..+..+++.+......|+...++.++. + +....+.... ..
T Consensus 183 ia~~~~~~~~~y~~~~l~Esl~~~~~~~---------------------~----------~~~~~~~~~~--------~~ 223 (463)
T KOG2816|consen 183 IAAASGILSLLYMLLFLPESLQEKERSD---------------------A----------TLRELTPGSL--------DS 223 (463)
T ss_pred HHHHHHHHHHHHHhhccccccCcccccc---------------------c----------cccccCCCcc--------cc
Confidence 9999888888777766665333322110 0 0000000000 00
Q ss_pred ccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCcee
Q 008565 289 TNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQ 368 (561)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (561)
.+ ..++++...+ ....|..+.+... ......--......... .+.+..+ +++
T Consensus 224 ---~~----------------~~~~~~~~~~--~~~~r~~l~l~l~--~~~~~~~~~~~~~~~~~---~yl~~~f--~w~ 275 (463)
T KOG2816|consen 224 ---SH----------------VADAFQSLTK--VGPDRLLLLLLLV--AFLSSLPEAGGASDVLL---LYLKAKF--GWN 275 (463)
T ss_pred ---hh----------------hhhhhhhhcc--cCCCccchHHHHH--HHHHHHHHhcCceeEEE---EEEeeec--CcC
Confidence 00 0001110011 1112222211111 01111111111110111 1112222 111
Q ss_pred e-----ccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccch
Q 008565 369 V-----PPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPIS 443 (561)
Q Consensus 369 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (561)
. -....+.......++..|.+.+. ....+.+..|+....+..++.++.+ .
T Consensus 276 ~~~~s~~~~~~~~~~~i~~l~~~~~l~~~---l~~~~~i~lGl~~~~~~~~~~af~~----------------------~ 330 (463)
T KOG2816|consen 276 KKEFSDLLSLVSILGIISQLLLLPLLSSI---LGEKRLISLGLLSEFLQLLLFAFAT----------------------E 330 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHhhHHHHHHHHHHHHHHHhc----------------------c
Confidence 1 12233344556666677776665 2223378889999999999988863 3
Q ss_pred hhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccc
Q 008565 444 IWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAIT 507 (561)
Q Consensus 444 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~ 507 (561)
.|.+... ...........|...+++....+++.||++.++......+.+.+++.+.+.+...+
T Consensus 331 ~w~~~~~-~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 331 TWMMFAA-GVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred chhhhHH-HHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3333333 33344455778999999999999999999999999999999999999998887644
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=120.48 Aligned_cols=187 Identities=17% Similarity=0.077 Sum_probs=148.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
.+..|.+....+...-++-++..++|.|++++++.++.+++.+...+.+...+..+++|+||||+ |.+|+++......+
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 35688899889888888889999999999999999999999999999999999999999999998 98888888877777
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++............+..+....+...+..++..|.-......+++..+|++ -+...|+..+.+++|+..-|..
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga~G~lGGf~lp~~ 368 (417)
T COG2223 296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGAIGGLGGFFLPLA 368 (417)
T ss_pred HHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHHhccccccchhHH
Confidence 777666655210001123333444444455666666667788888888764 6778899999999999999999
Q ss_pred HHHhhcccc-chHHHHHHHHHHHHHHHHHHHhcccc
Q 008565 194 AIYLQDNVG-WAVGFGVMAGALALALAIFLIGIKRY 228 (561)
Q Consensus 194 ~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~ 228 (561)
.+...+..| +...|++.....+++.+..+..+.+.
T Consensus 369 ~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 369 FGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988887 88999999888888888777765543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=124.22 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLA-GNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~-~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
|.++.++...++....++... .+.|.|.++.+|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 345555555566666666665 7888888877999999999999999999999999999999997 99999888777666
Q ss_pred HHHHHHHHhhhcccccc-hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHY-RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
++.....+. . +.+.+++..++.|++.+...+...+++.|.+|+++ |++..++.+...++|..++|.
T Consensus 289 ~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~g~~ 355 (365)
T TIGR00900 289 LAILVVGLT-------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSLSHAAWPLGLI 355 (365)
T ss_pred HHHHHHHhh-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 666666655 3 36667778888999999888999999999999998 999999999999999999999
Q ss_pred HHHHhhcccc
Q 008565 193 VAIYLQDNVG 202 (561)
Q Consensus 193 l~g~l~~~~g 202 (561)
++|++.|.+|
T Consensus 356 ~~g~l~~~~g 365 (365)
T TIGR00900 356 LAGPLADHLG 365 (365)
T ss_pred HHHHHHHHcC
Confidence 9999988654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=116.83 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNV--LNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+..+...+..|+....-.++..|++.|+.+. +|+++.+.+...+.+..+..++..++++++||+ |+||.+.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 3444444455554445667888999999854 799999999999999999999999999999997 9999988887777
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
+++.++.... ++... .....+.|++.+...|...+...+.+|++. +.+.++. ....+|+.++|.
T Consensus 219 ~~~~~l~~~~-------~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~-~~~~~Gg~i~P~ 282 (310)
T TIGR01272 219 VLLSIGAALT-------HGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL-CLAIVGGAIVPL 282 (310)
T ss_pred HHHHHHHHHc-------CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH-HHHHhcchHHHH
Confidence 7766555444 22222 235557889999999999999989887653 2333443 567799999999
Q ss_pred HHHHhhccccchHHHHHHHHHH
Q 008565 193 VAIYLQDNVGWAVGFGVMAGAL 214 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~ 214 (561)
+.|.+.|..|.+.+|++..++.
T Consensus 283 l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 283 LQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred HHHHHHHhccchHHHHHHHHHH
Confidence 9999999999888887555443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=123.80 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHH--HHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSS--FIY 112 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~--~~~ 112 (561)
+.++.+.+..++.....+.+..++|.|+++.+|.+..+.+...+...++..++.++.|+++||+.+||+...... ...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 346666667777777778888999999999999999999999999999999999999999998523443322211 111
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++....... ...+.....+..++.|+......+....+..|.+|+++ |+++.++.+...++|..++|.
T Consensus 296 ~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~ 364 (379)
T TIGR00881 296 IVSLLVYWLN-----PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGFFAYLGGILAGL 364 (379)
T ss_pred HHHHHHHhcC-----cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHHhhhhhhhhhhh
Confidence 1222222211 01233444455556666555555666778899999998 999999999999999999999
Q ss_pred HHHHhhccccchHHH
Q 008565 193 VAIYLQDNVGWAVGF 207 (561)
Q Consensus 193 l~g~l~~~~g~~~~f 207 (561)
+.|.+.+..||+..|
T Consensus 365 ~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 365 PLGYLADGFGWAGAF 379 (379)
T ss_pred hHHHHHHhhcccccC
Confidence 999999999998654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-11 Score=122.66 Aligned_cols=169 Identities=11% Similarity=0.103 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVL---NEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
++.+....++....+.....+.+.|+.+.+ +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++.+
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~ 295 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS 295 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence 444444444545555556667888887665 45666778888888888999999999999997 99999999888877
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHH-HHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNW-WYLGIVFGASAAVL 192 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~igp~ 192 (561)
++..+.... ++.+.+++..++.|++..........+..+..+++. +++..+. ++....+|..++|.
T Consensus 296 l~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~~lg~~~~~~ 362 (396)
T TIGR00882 296 VRIIGSSFA-------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAKQLAMIFLST 362 (396)
T ss_pred HHHHHHHhc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHHHHHHHHHHH
Confidence 777665655 567777778888888865554455556667677666 7776666 67889999999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHH
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALA 219 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~ 219 (561)
++|++.+..||+..|.+.++..++..+
T Consensus 363 l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 363 LAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999999999999999888776655443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=111.49 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=133.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHH
Q 008565 31 KGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSF 110 (561)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~ 110 (561)
....+.+|.+.++-++-..+.+=....-|.+.++++|+|+.+++.+.+.....+.+.+|+.|.++||+ ||+-..+.+..
T Consensus 260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~ 338 (459)
T KOG4686|consen 260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASAC 338 (459)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHH
Confidence 34446688887777777777766777788999999999999999999999999999999999999998 99877665533
Q ss_pred -HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 111 -IYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
.+.++-..+.+. .+.-+.+..++|+.......+..+.++...|+++ .+++++..+...|+|-.+
T Consensus 339 ~~tl~~H~~l~Ft---------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 339 ILTLLGHSGLFFT---------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred HHHHHHhhhHHhh---------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhH
Confidence 344444444443 2234566677888887777778899999999999 999999999999999999
Q ss_pred HHHHHHHhhcccc---chHHHHHHHHHHHHH
Q 008565 190 AVLVAIYLQDNVG---WAVGFGVMAGALALA 217 (561)
Q Consensus 190 gp~l~g~l~~~~g---~~~~f~~~~~~~~i~ 217 (561)
.|+++|.+.|.-| |-.+|++......+.
T Consensus 404 i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~ 434 (459)
T KOG4686|consen 404 IPIIAGFIADGDGSYDNLEAFFLIIGLMALT 434 (459)
T ss_pred HhhhhheeecCCCchhhHHHHHHHHHHHHHH
Confidence 9999999988654 445665555444333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-10 Score=111.44 Aligned_cols=83 Identities=19% Similarity=0.100 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc---------
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN--------- 200 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~--------- 200 (561)
.+...++++.++.|.|.+...+..+++++++.|+++ +++.+++.+....+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 467888999999999999999999999999999988 99999999999999999999999987632
Q ss_pred -------ccchHHHHHHHHHHHHHH
Q 008565 201 -------VGWAVGFGVMAGALALAL 218 (561)
Q Consensus 201 -------~g~~~~f~~~~~~~~i~~ 218 (561)
.+|+++|++.+....+..
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~ 106 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLA 106 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 368888886655544433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=124.23 Aligned_cols=169 Identities=11% Similarity=0.050 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccccc-
Q 008565 51 YYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH- 129 (561)
Q Consensus 51 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (561)
...+..+.|.++ +++|++..+.++......++..++.+++|+++||+ |||+.+.+++++.+++.+++.+........
T Consensus 300 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
T TIGR00879 300 INAIMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTGS 377 (481)
T ss_pred CeehHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 334445555554 56899998889999999999999999999999997 999999988887777766665321100110
Q ss_pred ---chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Q 008565 130 ---YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVG 206 (561)
Q Consensus 130 ---~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~ 206 (561)
.+...+....++.+.......+....++.|.+|++. |+++.++.+...++|.+++|.+.+++.++.+|++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~ 451 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV 451 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccce
Confidence 022222222222222222334666778899999998 99999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 008565 207 FGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 207 f~~~~~~~~i~~~~~~~~~~~ 227 (561)
|++.+++.+++.+..+...++
T Consensus 452 f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 452 FIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred ehhHHHHHHHHHHHHheeccc
Confidence 988887777666665554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=119.45 Aligned_cols=174 Identities=16% Similarity=0.004 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHH-HHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVG-ISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.+..+...++...+......+.+.|+.| .|+++++.+++...... ...++.+++|++.||+ |+|+.+..+..+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 4444445556666666677788899976 79999999999888765 5667789999999997 9999988876655333
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhccc-CCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDE-RNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+........ ....+...++....+.+++.+...+...+.+.+..++ +. +++.++..+...++|..+||.++
T Consensus 288 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lg~~~g~~~~ 360 (390)
T TIGR02718 288 ALLWFAQAAF-WLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQSTRDLGELIASSIA 360 (390)
T ss_pred HHHHHHHHHc-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211100 0001223333444455666676667777777777765 66 89999999999999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHH
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALA 219 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~ 219 (561)
|++.+..||+..|.+.++..++++.
T Consensus 361 G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 361 GYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999887776666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-11 Score=124.70 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|.++.++...++.....+....+.+.|.+..++ ++.+.+++.....++..++.++.|+++||+ |||+++.++..+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 445556666777777776666666666665556 556677788888899999999999999997 999999999888887
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCC-ccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPK-DKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+.+...+.. ++...+++..++.+++.+...+...++++|..|.++.+ ....++..+|+.++...+|..+++.+
T Consensus 300 ~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 300 GYLIFFFAG------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred HHHHHHHcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 776665541 24455666677888888888889999999987643211 01117888999999999999999999
Q ss_pred HHHhhccccch
Q 008565 194 AIYLQDNVGWA 204 (561)
Q Consensus 194 ~g~l~~~~g~~ 204 (561)
.|++.+..||.
T Consensus 374 ~g~ll~~~G~~ 384 (437)
T TIGR00792 374 VGLILGIIGYV 384 (437)
T ss_pred HHHHHHHcCCC
Confidence 99998877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=117.81 Aligned_cols=172 Identities=9% Similarity=-0.133 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.++......++.....+....+.|.|+.+++|+++.+.++......++..++.++.|+++||+ |+|+.+.++.++.+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 355555555555566666677788998888999999999888888888889999999999997 9999998888877777
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
..+...... ....+...+++..++.|++.+...+......... ++++ |++..+.+++...+|..+|+.+.+
T Consensus 295 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~~~~~~~~g~~~~~ 365 (406)
T PRK15402 295 LLLAALATV--ISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGMLSMLIFTVGIELSK 365 (406)
T ss_pred HHHHHHHHH--cccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655310 0112455566777788888887666655554433 3355 999999999999999999999999
Q ss_pred HhhccccchHHHHHHHHHHHHH
Q 008565 196 YLQDNVGWAVGFGVMAGALALA 217 (561)
Q Consensus 196 ~l~~~~g~~~~f~~~~~~~~i~ 217 (561)
++.+..++....+...+..++.
T Consensus 366 ~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 366 HAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred hcccCCchHHHHHHHHHHHHHH
Confidence 9988877665444444333333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-10 Score=120.85 Aligned_cols=157 Identities=14% Similarity=0.001 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
..+..+...++..+++.....+.|.|++..+|.++.+.++......++..++.++.|+++||+ |||+++..+..+..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 344555666676777666667788888888999999999999888888888889999999997 9999999888877776
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
..++.+.. ...+...+.+..++.|++.+...+....++.+.+|++. ++.++++.+....+|..+|+.++|
T Consensus 341 ~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ig~~i~g 410 (471)
T PRK10504 341 SLLFMLVA----LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIMQLSMSIGVTIAG 410 (471)
T ss_pred HHHHHhcc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 66555431 11233334455667788888888888899999999988 999999999999999999999999
Q ss_pred Hhhccccc
Q 008565 196 YLQDNVGW 203 (561)
Q Consensus 196 ~l~~~~g~ 203 (561)
.+.+..|+
T Consensus 411 ~ll~~~g~ 418 (471)
T PRK10504 411 LLLGLFGQ 418 (471)
T ss_pred HHHHHhhh
Confidence 88776665
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=121.89 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.+..++...++.++....+...+|.+..+.+|.++...|++.+.+.++..++.++.+++.+|+ ++++.+..+.++++++
T Consensus 219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~ 297 (524)
T PF05977_consen 219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALA 297 (524)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHH
Confidence 343344444444454455667789999999999999999999999999999999999999997 9999888888888888
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.+.+.+. .+.+..++..++.|++.....+...+.+-+..|++. ||+.++++++....+..+|..+.|
T Consensus 298 ~~~lal~-------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g~~~lGsll~G 364 (524)
T PF05977_consen 298 LLLLALS-------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFGGMPLGSLLWG 364 (524)
T ss_pred HHHHhcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877 577777888888999988888888899999999999 999999999999999999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHH
Q 008565 196 YLQDNVGWAVGFGVMAGALALALAIFL 222 (561)
Q Consensus 196 ~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (561)
.+.+..|-+..+.+.++..+++.++..
T Consensus 365 ~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 365 FLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877766555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-10 Score=115.36 Aligned_cols=173 Identities=10% Similarity=0.005 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
.+......++.....+....+++.|+.+.+|+++.+.+.+.+...++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 44444444555556666667788898888999999999999999999999999999999997 99999988887777776
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhh-hhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAA-DQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
++..... ++.+...+..++.+++.+...+....... +..+++. ++.+ ..+....+|..+||.++|
T Consensus 280 ~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~g~~~Gp~~~G 345 (382)
T PRK10091 280 LMLFFFG------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAFNLGSAIGAYCGG 345 (382)
T ss_pred HHHHHHH------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHHHHHHHHHHHHhH
Confidence 5554321 23334444445555554444443343333 3333333 4333 346678899999999999
Q ss_pred Hhhcc-ccchHHHHHHHHHHHHHHHHHHHh
Q 008565 196 YLQDN-VGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 196 ~l~~~-~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
++.|. .+|+..+.+.++..++.+..+...
T Consensus 346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 346 MMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 99885 689999988877666555544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=121.11 Aligned_cols=166 Identities=10% Similarity=-0.003 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHH-HHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTN-VLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNT-ILLSSFIY 112 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~-~~~~~~~~ 112 (561)
+.+|......++....++++..++|.|+++ ..|.+..+++.+.+...++..++.+++|+++||+ +||+. ......+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 346666777788888899999999999977 3477888999999999999999999999999997 87764 33333333
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++..+.... .+.........+.++|.....+.......|.+|+++ |++++|+.+...++|.+++|.
T Consensus 321 ~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~~~~~g~~~~p~ 387 (412)
T TIGR02332 321 AAGWLLASAT-------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINATGNIGSALSPF 387 (412)
T ss_pred HHHHHHHHhc-------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHHhhhhhhhhhhh
Confidence 3332222111 122222222223333332223333445567788888 999999999999999999999
Q ss_pred HHHHhhcccc-chHHHHHHHHHH
Q 008565 193 VAIYLQDNVG-WAVGFGVMAGAL 214 (561)
Q Consensus 193 l~g~l~~~~g-~~~~f~~~~~~~ 214 (561)
+.|.+.+..| |+..|++.++..
T Consensus 388 ~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 388 LIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred hcccccccCCCCchhHHHHHHHH
Confidence 9999999875 999887766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=120.93 Aligned_cols=178 Identities=16% Similarity=0.025 Sum_probs=122.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHH--------H
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNT--------I 105 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~--------~ 105 (561)
.+.+|.+.+..++....++.+..|+|.|+++.+|.+..+.++..++..++..++.+++|+++||+ ++|+. +
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 34577788888899999999999999999999999999999999999999999999999999996 64421 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH
Q 008565 106 LLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF 185 (561)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 185 (561)
..+......+..++... ....+....++...+.+.+.+...+.......|..|. . ++...++.+...++
T Consensus 339 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~l 407 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALP----YLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LGFIKGITGLPGFI 407 (465)
T ss_pred HHHHHHHHHHHHHHHHH----HcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HHHHHHHHHHHHHH
Confidence 11111111111111111 0002233333333444444444444444455565554 5 89999999999999
Q ss_pred HHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHHHHHHH
Q 008565 186 GASAAVLVAIYLQDNV---GWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 186 G~~igp~l~g~l~~~~---g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
|+.++|.+.|++.+.. +|+..|++.++..+++.++...
T Consensus 408 ~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 408 GGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 9999999999987643 3888888887777776655443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-10 Score=116.96 Aligned_cols=157 Identities=10% Similarity=0.037 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCCChhhhhHHHHHHH-HHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHH
Q 008565 56 GNLIQYLTNVLNEPTATAAQDVNNWV-GISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAV 134 (561)
Q Consensus 56 ~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (561)
.+.+.|+.+++|+++.+.+++.+... .+..++.+++|+++||+ |||+.+..+..+..+..+.+..... ..++.+.
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~---~~~~~~~ 305 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAV---TPKHLWT 305 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHh---cCCcHHH
Confidence 44556677789999999999887654 45789999999999997 9999887776665555443322110 0123344
Q ss_pred HHHHHH----HHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Q 008565 135 FFTALY----ILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVM 210 (561)
Q Consensus 135 l~~~~~----l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~ 210 (561)
+.+..+ ..+++.+...+....++.+.+|.++ .+..+...++|..+++.++|++.|.+||+..|.+.
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~ 375 (402)
T PRK11902 306 MALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----------YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMT 375 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 444443 3444445445555556666655433 45555556777776677899999999999999998
Q ss_pred HHHHHHHHHHHHHhcc
Q 008565 211 AGALALALAIFLIGIK 226 (561)
Q Consensus 211 ~~~~~i~~~~~~~~~~ 226 (561)
+++.+++.++.+...+
T Consensus 376 ~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 376 VVIALPGLALLWLMRG 391 (402)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8887777666555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=118.79 Aligned_cols=147 Identities=16% Similarity=0.072 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
..+.+....++....++....++| ++.+++|.+..+.+...+...++..++.++.|+++||+ |||+.........+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 328 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA 328 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence 344455556667777778888888 66677899999999999999999999999999999997 9985544433333322
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.++.... .+....++..++.|++.+...+...+++.|.+|+++ |++++|+.+....+|..+||.++|
T Consensus 329 ~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~g~~~~G 395 (398)
T TIGR00895 329 VLVGSTL-------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGRLGAIIGPILAG 395 (398)
T ss_pred HHHHHHh-------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2222222 355566677788899988888999999999999998 999999999999999999999998
Q ss_pred Hh
Q 008565 196 YL 197 (561)
Q Consensus 196 ~l 197 (561)
++
T Consensus 396 ~l 397 (398)
T TIGR00895 396 YL 397 (398)
T ss_pred hc
Confidence 75
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=118.81 Aligned_cols=173 Identities=14% Similarity=0.048 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTN--VLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
.++......++..+.+.....+.+.|+.. +.+.+....+.+............++.|++.||+ ++|+.+..++.+..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence 34444455566555555555667777653 3455666677888887777777788999999997 99999988887777
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++...+.+.. ++.+.+.+..++.++|.+...|...+++.+..|++. |++.++..+ ...+|..+||.+
T Consensus 286 ~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~-~~~~G~~~Gp~~ 352 (395)
T PRK10054 286 IGLVGFIFSG------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS-LGWLGAAINPLV 352 (395)
T ss_pred HHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-HHHHHHHHHHHH
Confidence 7776665531 355556667788999988777888889999999887 888888654 566899999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHH
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFL 222 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (561)
+|++.|+.|....|++.++..+++++...
T Consensus 353 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 353 SGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 99999999998888887777766666655
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-09 Score=109.81 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=115.1
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc--cC--chHHHHHHHHHHHHHHHHHHHhhhcccccchhH
Q 008565 58 LIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY--LG--RFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKA 133 (561)
Q Consensus 58 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~--~G--rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (561)
...|+++++|+++++...+.+...+.-. ..++.|.++|-+ .| ||+-++++.++..++...+.... ....+..
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~~~~s~~ 87 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---ASESSAA 87 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---cccchhh
Confidence 3467889999999998887777666544 467779999996 24 34445555555544444444431 1112445
Q ss_pred HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008565 134 VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGA 213 (561)
Q Consensus 134 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~ 213 (561)
...+..++..+|.+......-++..|....+... |+..-+..+....+|.+++..++|.+.+..+++..|.+.++.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL 163 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence 5556667788888888899999999987554322 677788888889999999999999999999999999888777
Q ss_pred HHHHHHHHHHhccc
Q 008565 214 LALALAIFLIGIKR 227 (561)
Q Consensus 214 ~~i~~~~~~~~~~~ 227 (561)
..+..+..+...++
T Consensus 164 ~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 164 PLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHhhhh
Confidence 66665554444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=115.50 Aligned_cols=151 Identities=15% Similarity=0.070 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008565 48 RFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIP 127 (561)
Q Consensus 48 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (561)
....+.+..++|.|+++ .|.++.+.+...+...++..++.++.|+++||+ |||+.+..+.++.++..++.....
T Consensus 244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---- 317 (426)
T PRK12307 244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---- 317 (426)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc----
Confidence 33444567889999876 699999999999999999999999999999997 999998888776665544443331
Q ss_pred ccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHH
Q 008565 128 LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGF 207 (561)
Q Consensus 128 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f 207 (561)
..+...+....+..+.+..+..+..+.++.|.+|++. |++++|+.+....+|+.++|.+.|++.+..|+....
T Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~ 390 (426)
T PRK12307 318 -QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAAL 390 (426)
T ss_pred -cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHH
Confidence 0122212122222222223334566778899999998 999999999999999999999999999988876544
Q ss_pred HHHH
Q 008565 208 GVMA 211 (561)
Q Consensus 208 ~~~~ 211 (561)
++..
T Consensus 391 ~~~~ 394 (426)
T PRK12307 391 TFIV 394 (426)
T ss_pred HHHH
Confidence 3333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=120.33 Aligned_cols=173 Identities=9% Similarity=-0.030 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchH-------HHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFN-------TILLSS 109 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~-------~~~~~~ 109 (561)
.|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+++.++..++.+++|+++||+ |||+ ...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 45555555555566667788899999988999999999999999999999999999999997 8752 222222
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 110 FIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
.+..+..++.... .+.....+..++.+++.+...+...+++.+..| +. |+...|+.+.+.++|+.+
T Consensus 333 ~l~~i~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~g~lg~~i 398 (476)
T PLN00028 333 TLGGVFCIWLGRA-------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISGLTGAGGNVGAVL 398 (476)
T ss_pred HHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhhhhhccccHHHHH
Confidence 2222222222222 233444444455555554444555566666544 45 888999987777787777
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
+|.+.+ ..+..+|+..|++.++..+++.++.++.+
T Consensus 399 ~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 399 TQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 776654 23345699999998888777776666554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.2e-10 Score=116.45 Aligned_cols=165 Identities=12% Similarity=0.099 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYL-TNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
+......++.....++...|++.|+ ++.+|.++.+.++....+.++..++.+++|++.||+ |||+++..+..+.+++.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~ 339 (438)
T PRK10133 261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALC 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 3344445566666677778889896 567899999999999999999999999999999997 99999888877766655
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
.+..+. .+. ..+....+.|++.+...|...+...+.+|++. +.+.++..+ ..+|+.++|.+.|.
T Consensus 340 ~~~~~~-------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~~-~~~g~~~~~~i~G~ 403 (438)
T PRK10133 340 LISAFA-------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIVM-TIIGGGIVTPVMGF 403 (438)
T ss_pred HHHHHc-------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHhH-HhccchHHHHHHHH
Confidence 554444 222 22455677899999999999999999887642 334444433 44678888899999
Q ss_pred hhcccc-chHHHHHHHHHHHHHHH
Q 008565 197 LQDNVG-WAVGFGVMAGALALALA 219 (561)
Q Consensus 197 l~~~~g-~~~~f~~~~~~~~i~~~ 219 (561)
+.+..| -+..|++..+..+....
T Consensus 404 l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 404 VSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 999887 78888766655544443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.3e-10 Score=112.22 Aligned_cols=173 Identities=10% Similarity=0.126 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.+...+++.++-+=+.-++......|..+++|++..+...+.....+.++++.+++|+|.||+ |-|+++..+++...+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 555555666666666667888888999999999999999999999999999999999999997 9999999999988887
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
++...+. .....+++.-++.|+..|..++.+-++.++.+|+++ -++.+|++++....+..+||.+.+
T Consensus 332 ~~~~~~~-------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~ 398 (438)
T COG2270 332 ALYLIFL-------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVA 398 (438)
T ss_pred HHHHHHc-------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHH
Confidence 7777766 345556666678999999999999999999999999 888999999999999999999999
Q ss_pred Hhhcccc-chHHHHHHHHHHHHHHHHHH
Q 008565 196 YLQDNVG-WAVGFGVMAGALALALAIFL 222 (561)
Q Consensus 196 ~l~~~~g-~~~~f~~~~~~~~i~~~~~~ 222 (561)
.+.+..| -|..+....++..++++.++
T Consensus 399 v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 399 VITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred HHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 9988765 56666555555555554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=113.28 Aligned_cols=162 Identities=9% Similarity=0.083 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
.+...+...+....++....+.|.|+++++|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44444445555666677778889999889999999999999999999999999999999997 99999888877777766
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH-HHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF-GASAAVLVAI 195 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~igp~l~g 195 (561)
+++..... ........++...++.|++.+...+.......|..| ++ |+++.++.+..... |.+.+| +.+
T Consensus 287 ~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~i~~~-~~~ 356 (385)
T TIGR00710 287 VLLEITAI--LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLRLVLGAIVGY-LVS 356 (385)
T ss_pred HHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHHHHHHHHHHH-HHH
Confidence 65554311 000123344555667888888888888888888776 45 88899987776654 555555 455
Q ss_pred HhhccccchHHHHH
Q 008565 196 YLQDNVGWAVGFGV 209 (561)
Q Consensus 196 ~l~~~~g~~~~f~~ 209 (561)
.+.+..+|...++.
T Consensus 357 ~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 357 LIHGNTAWPMSLSC 370 (385)
T ss_pred hccccChHHHHHHH
Confidence 55555455444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=111.40 Aligned_cols=153 Identities=18% Similarity=0.105 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+..+.+....++....++....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+-+||+.+..+..+.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 345555556666777888888999999975 7999999999999999999999999999999962456666677777777
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhccc-CCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDE-RNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+.+.+.+. .+.... ...++.|++.+...+...+.+.+..++ ++ ++..+++.+...++|..++|.+
T Consensus 276 ~~~~~~~~-------~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~gp~~ 341 (355)
T TIGR00896 276 GLCGLLFA-------PMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AAALSAMAQSIGYLLAALGPLF 341 (355)
T ss_pred HHHHHHHh-------hhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 76666554 121111 234578899888888877777665543 44 7788888888889999999999
Q ss_pred HHHhhcccc
Q 008565 194 AIYLQDNVG 202 (561)
Q Consensus 194 ~g~l~~~~g 202 (561)
.|++.|+.|
T Consensus 342 ~G~l~~~~g 350 (355)
T TIGR00896 342 VGVLHDISG 350 (355)
T ss_pred HHHHHHHhc
Confidence 999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.3e-10 Score=119.10 Aligned_cols=174 Identities=15% Similarity=0.094 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhH------------HHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHH
Q 008565 42 MVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQ------------DVNNWVGISSIFPLLGAFVADSYLGRFNTILLSS 109 (561)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~------------~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~ 109 (561)
...++..+.+|++..+.|.+++ +.|++..+.+. ......++..++.+++++++||+ |||++++++.
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~ 372 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGF 372 (502)
T ss_pred HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHH
Confidence 3445566788888888888885 57877543221 12233445566788899999997 9999998887
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 110 FIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
.+..++..++.+... .......+....+...++.....+....+.+|.+|++. |+++.++.+....+|+++
T Consensus 373 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~~~~~~~~~~~~ 443 (502)
T TIGR00887 373 FILTVLFFVLGFAYN---HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHGISAASGKAGAII 443 (502)
T ss_pred HHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHHHHHHHhhhHHHH
Confidence 777766655554310 00011111111112222222344666778899999999 999999999999999999
Q ss_pred HHHHHHHhhcc----------ccchHHHHHHHHHHHHHHHHHHHhccc
Q 008565 190 AVLVAIYLQDN----------VGWAVGFGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 190 gp~l~g~l~~~----------~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (561)
+|.+.+++.+. .++...|++.++..+++.+.. ++.|+
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpE 490 (502)
T TIGR00887 444 GQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPE 490 (502)
T ss_pred HHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEecc
Confidence 99999998873 344556766666655554433 33344
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-09 Score=109.13 Aligned_cols=167 Identities=10% Similarity=0.013 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH-
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF- 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~- 113 (561)
|.++......++.....++...+++.++.+++|+++.+.+.+...+.++..++.++.|++.||. +|+ .++.+..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHH
Confidence 3455544445555566666667764444567899999999999999999999999999999995 544 4333433333
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
...++.... ++.+.+.+..++.|++.+...+..++++.+..|+ + +++..+......++|..+||.+
T Consensus 294 ~~~~l~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~lg~~~G~~l 359 (394)
T PRK10213 294 SALVLTLWG-------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSIQVAVIQLANTCGAAI 359 (394)
T ss_pred HHHHHHHHh-------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 3556666777889999988888888888888874 3 5566677777889999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHH
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALA 217 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~ 217 (561)
+|++.|..|++..++..++..++.
T Consensus 360 ~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 360 GGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHhccChhhHHHHHHHHHHHH
Confidence 999999999988887776554333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=112.79 Aligned_cols=186 Identities=10% Similarity=0.001 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
..|.+.+..++..-++.+...++|.|+++.+. .........+..+...+..|++|+++||+ |+||++.++.+..+++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence 47888888888777777788899999987653 33333334455677889999999999997 9999999988877776
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCC---------------ccccchhhHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPK---------------DKGAKSSFFNWWY 180 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~---------------~~~~r~~~~~~~~ 180 (561)
........ +.....+...+.+..+...++.|.-..+...++++.+|+++.. .+..-+...|+..
T Consensus 330 ~~~~~l~l-p~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~ 408 (462)
T PRK15034 330 SALLFLTL-PGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFIS 408 (462)
T ss_pred HHHHHHHh-ccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHH
Confidence 64433321 1011124455555555555666666777788888888751000 0012567778888
Q ss_pred HHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHhc
Q 008565 181 LGIVFGASAAVLVAIYLQDNVG-WAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 181 ~~~~lG~~igp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
....+|+.+-|.+.|...+..| +...|+...+..++..++.+...
T Consensus 409 a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 409 AIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999988787766544 88888888888777777666543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=102.74 Aligned_cols=117 Identities=11% Similarity=-0.038 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCC---Ch----hhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHH-HHHHHHHHHHHHHHHHhhhcc
Q 008565 55 AGNLIQYLTNVLNE---PT----ATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTI-LLSSFIYFMGMVLLSLAVSVI 126 (561)
Q Consensus 55 ~~~l~~yl~~~lg~---s~----~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~-~~~~~~~~~~~~~~~~~~~~~ 126 (561)
..++|+|+++..+. ++ +..+...++..+..++..|+-|.++|+. |+||.. -....+..+...++++..
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~--- 110 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP--- 110 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC---
Confidence 45678888876654 33 3356777888888888999999999996 866554 444444445556666652
Q ss_pred cccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhH
Q 008565 127 PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFF 176 (561)
Q Consensus 127 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (561)
....++...+..++..++..+......+++.+..++++.+..++++-+.
T Consensus 111 -~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~ 159 (438)
T COG2270 111 -PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWAL 159 (438)
T ss_pred -CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCccccccccc
Confidence 1124555666667788888888889999999999998855444443333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=117.22 Aligned_cols=153 Identities=8% Similarity=-0.029 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.........++....+++...++|.|+++.+|.++.+++.......++..++.++.|++.||+ |||+.+..+..+.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 344455666677777888888999999999999999999999999999999999999999997 9999988888887777
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.+++.... ...+.+......++.|+|.|...+.....+.+..|+++ ++.+.++++...++|..+|+.+.|
T Consensus 339 ~~~l~~~~----~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lG~~~G~ai~g 408 (495)
T PRK14995 339 FYGLAMTD----FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYELGAGLGIAIFG 408 (495)
T ss_pred HHHHHHhc----CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 76655431 11234455667788999999888888888889999988 999999999999999999999999
Q ss_pred Hhhc
Q 008565 196 YLQD 199 (561)
Q Consensus 196 ~l~~ 199 (561)
.+.+
T Consensus 409 ~i~~ 412 (495)
T PRK14995 409 LLLS 412 (495)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.2e-09 Score=112.87 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008565 51 YYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHY 130 (561)
Q Consensus 51 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (561)
++.+..+.|.+. ++.|.+..+..+......+...++.+++|+++||+ |||+.++.+.++.+++.+++..... .+.
T Consensus 287 ~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~---~~~ 361 (479)
T PRK10077 287 INVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY---TQA 361 (479)
T ss_pred hhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh---cCc
Confidence 334445555554 56898887778877788888999999999999997 9999999999888888777654311 001
Q ss_pred hhHHHHHHHHHHHHhccc-cchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH------hhccccc
Q 008565 131 RKAVFFTALYILAVGEGG-HKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY------LQDNVGW 203 (561)
Q Consensus 131 ~~~~l~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~------l~~~~g~ 203 (561)
..........+.+.+.+. ..|...++++|.+|+++ |++++++.+...++|.++++.+.+. +.+..+|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 435 (479)
T PRK10077 362 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHN 435 (479)
T ss_pred ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccC
Confidence 111222333344444332 34677899999999988 9999999999999999888666554 4457788
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 008565 204 AVGFGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 204 ~~~f~~~~~~~~i~~~~~~~~~~~ 227 (561)
+..|++.++..+++.+..+...++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~e 459 (479)
T PRK10077 436 GFSYWIYGCMGVLAALFMWKFVPE 459 (479)
T ss_pred ccHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877666666655554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-08 Score=96.25 Aligned_cols=153 Identities=19% Similarity=0.141 Sum_probs=110.0
Q ss_pred HhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHH
Q 008565 64 NVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILA 143 (561)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 143 (561)
+++|++..+++.+.......+.+..++.|.++||+ |||+..+...+++.++++.--. ++...++++|++.|
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~--------~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS--------SNYPVLLLGRVLGG 132 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc--------cccHHHHHHHHHHH
Confidence 57899999999999999999999999999999997 9999999888888887765444 48999999999999
Q ss_pred Hhccccchhhhh-HhhhhcccCCCCccccchhhHHHHH-HHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHHH
Q 008565 144 VGEGGHKPCVQT-FAADQFDERNPKDKGAKSSFFNWWY-LGIVFGASAAVLVAIYLQDNVGW--AVGFGVMAGALALALA 219 (561)
Q Consensus 144 ~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~igp~l~g~l~~~~g~--~~~f~~~~~~~~i~~~ 219 (561)
++.....++--+ ++.|+-..+.+.+- .+.-++... ....+-++.+-.++-++.+..+. ..+|....+..+++.+
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 999988887776 56776433322111 233333322 22233344444455566665554 6788888877777777
Q ss_pred HHHHhccc
Q 008565 220 IFLIGIKR 227 (561)
Q Consensus 220 ~~~~~~~~ 227 (561)
++...+++
T Consensus 211 ~I~~~W~E 218 (354)
T PF05631_consen 211 LILKTWPE 218 (354)
T ss_pred HHHhcccc
Confidence 66555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=116.28 Aligned_cols=155 Identities=12% Similarity=0.042 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
..+......++..+.+++...++|.|+++.+|.++.+.++......++..++.+++|++.||+ |||+.+.++..+.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 344556666777788888889999999999999999999999999999999999999999997 9999999888888777
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
..++.+.. ....+...+....++.|++.+...+.......+..|+++ |+++.++.+...++|..+|+.+.+
T Consensus 335 ~~~~~~~~---~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 335 FYWRAFTF---TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTRQLGGSIGTALIT 405 (485)
T ss_pred HHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665321 111244555666778899988877777777788889888 999999999999999999999999
Q ss_pred Hhhcc
Q 008565 196 YLQDN 200 (561)
Q Consensus 196 ~l~~~ 200 (561)
.+.++
T Consensus 406 ~~~~~ 410 (485)
T TIGR00711 406 TILTN 410 (485)
T ss_pred HHHHH
Confidence 88764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-09 Score=111.10 Aligned_cols=155 Identities=13% Similarity=0.120 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchh
Q 008565 53 GLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRK 132 (561)
Q Consensus 53 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (561)
....++|.|+++..+ ++.+.+++.+...++...+....+++.||.++.++.+..+..+..++..++... ++.
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------~~~ 297 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------SNL 297 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------hhH
Confidence 345678899877655 677888888887776665555556666653366777777777777776666655 455
Q ss_pred HHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc---c-chHHHH
Q 008565 133 AVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV---G-WAVGFG 208 (561)
Q Consensus 133 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~---g-~~~~f~ 208 (561)
..+.+...+.+++.+...|...+++.|..|+++ |++.+|.++....+|..+||.++|++.|.. + ....|+
T Consensus 298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~ 371 (400)
T PRK11646 298 QQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWM 371 (400)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHH
Confidence 556666677888888778888999999999998 999999999999999999999999998764 2 345555
Q ss_pred HHHHHHHHHHHHH
Q 008565 209 VMAGALALALAIF 221 (561)
Q Consensus 209 ~~~~~~~i~~~~~ 221 (561)
+.++..++..+.+
T Consensus 372 ~~~~~~~~~~~~~ 384 (400)
T PRK11646 372 MLGIIGLITLLAL 384 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=106.51 Aligned_cols=175 Identities=13% Similarity=0.081 Sum_probs=118.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-----------------CChhhhhHHHHHHHHHHHHhhhHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVL--N-----------------EPTATAAQDVNNWVGISSIFPLLGAFV 94 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l--g-----------------~s~~~~~~~~~~~~~~~~~~~~~~G~l 94 (561)
+|..+.+..+-|.+.+.||+.+.......+... + .+...--.=.-+..+..+.|.++.+++
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence 344566777788889999988766544433211 1 111112222334456677899999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchh
Q 008565 95 ADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSS 174 (561)
Q Consensus 95 sDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (561)
.||+ |||+++.++++++.+..+++.... ..+.-...++.+|+++..+ +...+.|..|.+|... |+.
T Consensus 405 verl-GRKkTMal~l~~f~iflfll~~c~---~rn~~tvllf~arafisg~----fqvaYvYtPEVyPTav------Rat 470 (528)
T KOG0253|consen 405 VERL-GRKKTMALSLILFGIFLFLLTTCK---TRNAYTVLLFTARAFISGA----FQVAYVYTPEVYPTAV------RAT 470 (528)
T ss_pred HHHh-cchhHHHHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHhch----heEEEEecCcccchhh------hhc
Confidence 9996 999999999999998888877762 1112233456677666554 4455889999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 175 FFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 175 ~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+.|....+..+|+++.|.++ ...+ ..-..+..+.....+++.+...++
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheee
Confidence 99999999999999999888 3333 333334444444555555554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.7e-09 Score=107.18 Aligned_cols=167 Identities=14% Similarity=0.009 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCch---HHHHH-HHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRF---NTILL-SSF 110 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk---~~~~~-~~~ 110 (561)
|.+|.+....++....+|++..|+|.|+++ .|++.. .+...++..+...++ .++++||. .|| +.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence 557888888999999999999999999965 678764 565555555554444 57888885 543 33222 333
Q ss_pred HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHH
Q 008565 111 IYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAA 190 (561)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig 190 (561)
+.++......+. .+....++...+.+++.....+...++.+|.+|++. |+++.|+.+...++|+..+
T Consensus 266 ~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~~~~~g~~~~~~~ 332 (368)
T TIGR00903 266 LIAAFFLALAFE-------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGAIGFTSRAISVAL 332 (368)
T ss_pred HHHHHHHHHHHc-------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccchhhHHHHHHHHHH
Confidence 333333333333 223333344445566666666777889999999999 9999999999999999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAGALALALAIFL 222 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (561)
|.+.+.+.. |.+..|.+.++..+++.+...
T Consensus 333 ~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 333 ALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 999987773 667778777776666665554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-10 Score=115.01 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEP-TATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
+|.++...++..+.++....++|.|+.+.+|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+...+......++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 286 (352)
T PF07690_consen 208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG 286 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence 343444555555677778899999999999999 89999999999999999999999999997 9888777776666666
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.+.+..... .++....+...++.|++.+...+...+++.|.+|+++ |+++.++.+...++|..+||
T Consensus 287 ~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 287 ALGLLLLPF----SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHCCSHH----HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHCC
Confidence 555544411 1344566667778999999889999999999999998 99999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-09 Score=111.99 Aligned_cols=163 Identities=16% Similarity=0.145 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|....+++..++..++........+.|.+..+|.+ ...+.+.....++..++.++.++++||+ |||+++..+..+.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 44666777788888888877888888888888877 5677888888999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCc-cccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKD-KGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+.++..+... .+.+.+++..++.|++.+...+...++++|..+.++.+. +...+..+|.++....+|..+++.+
T Consensus 303 ~~~~~~~~~~-----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 303 GFLLLFFLGP-----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred HHHHHHHHHh-----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 8888877721 378888889999999999999999999999998654321 1225777788999999999999999
Q ss_pred HHHhhccccch
Q 008565 194 AIYLQDNVGWA 204 (561)
Q Consensus 194 ~g~l~~~~g~~ 204 (561)
.+.+.+..|+.
T Consensus 378 ~g~~l~~~Gy~ 388 (428)
T PF13347_consen 378 VGLLLALVGYD 388 (428)
T ss_pred HHHHHHHhCcC
Confidence 99887655543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-09 Score=109.16 Aligned_cols=162 Identities=10% Similarity=-0.090 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008565 48 RFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIP 127 (561)
Q Consensus 48 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (561)
..........++.|+++.+|.++.+.|.+.+...++..++.++.+++.||+ ++|+.+..++. ..+..+.+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~----- 290 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ----- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH-----
Confidence 344445556677888888999999999999999999999999999999997 98888777743 33333333333
Q ss_pred ccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHH
Q 008565 128 LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGF 207 (561)
Q Consensus 128 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f 207 (561)
++.+...+..++.|++.+...+...+.+.+..|++. + ++++.++.+...++|..++..+.+.+ +..|-+..+
T Consensus 291 --~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-~----~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 362 (393)
T PRK11195 291 --HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-G----AGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVA 362 (393)
T ss_pred --hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-c----chhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHH
Confidence 355555666778899888877777888877644432 1 68899999999999999999998866 457777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008565 208 GVMAGALALALAIFLIG 224 (561)
Q Consensus 208 ~~~~~~~~i~~~~~~~~ 224 (561)
++..+..++.......+
T Consensus 363 ~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 363 VIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76665555554444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=114.63 Aligned_cols=162 Identities=13% Similarity=0.162 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.++......++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++..+.+++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 355556666677777777777788888888888776666655555677788999999999997 9999999998888888
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCcc-ccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDK-GAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+.+.+.. ..+.+.+++..++.++|.+...+...++.+|..|.++.+.. ..++..+|.+++...+|..+|+.+.
T Consensus 308 ~~~~~~~~-----~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 308 YLLFFWVS-----VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHcC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77666541 12455566667788999999999999999998876542111 1157788999999999999999999
Q ss_pred HHhhccccc
Q 008565 195 IYLQDNVGW 203 (561)
Q Consensus 195 g~l~~~~g~ 203 (561)
+.+.+..||
T Consensus 383 g~~l~~~G~ 391 (448)
T PRK09848 383 AFILGLSGY 391 (448)
T ss_pred HHHHHHcCC
Confidence 988766665
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-09 Score=109.19 Aligned_cols=193 Identities=16% Similarity=0.096 Sum_probs=134.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
..++..+..+...+.+.+.-.....+-...+-++-|++..++.++.......+.+..+++.++.||+ |||+.++.+..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~ 344 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL 344 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 3344455555566665554333333333444567899999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhH--HHHHHHHHHH--HhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKA--VFFTALYILA--VGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGA 187 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 187 (561)
+.+..+++...........++. ..++..++.. ++.| ..|...-+.+|++|++. |..++++......+..
T Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~------R~aa~s~~~~~~w~~~ 417 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSA------RSAAQSVATAVNWLSN 417 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccc------hHHHHHHHHHHHHHHH
Confidence 8888777665532111111111 1223333333 3333 35788889999999998 9999999888877777
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 008565 188 SAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAP 233 (561)
Q Consensus 188 ~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 233 (561)
.+-......+.+.+|- +.|++..+..++..+..+...||.+.+++
T Consensus 418 fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 418 FIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTP 462 (485)
T ss_pred HHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 7766676777777765 67777777777777777777777665543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-09 Score=124.37 Aligned_cols=165 Identities=12% Similarity=0.011 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-hhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTA-TAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
+.++..++..++..+..+....++|.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++.+.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence 3444444455555566667778899999999999999 999999999999999999999999997 99998888888777
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++.+++.+. .+.+.+++..++.|++.+...+...+++.+.+|++. |++++++.++..++|..+++.+
T Consensus 311 ~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~~lg~~~~~~~ 377 (1146)
T PRK08633 311 LSLFLLPTA-------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQNVGMLLFLAL 377 (1146)
T ss_pred HHHHHHHHh-------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHHHHHHHHHHHH
Confidence 777776665 466677777888999988888888999999999998 9999999999999999888877
Q ss_pred HHHhhc-cccchHHHHHHHHH
Q 008565 194 AIYLQD-NVGWAVGFGVMAGA 213 (561)
Q Consensus 194 ~g~l~~-~~g~~~~f~~~~~~ 213 (561)
++.+.. ..++...|++.+..
T Consensus 378 ~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 378 TTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHhccCHHHHHHHHHHH
Confidence 776654 23454555554433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-08 Score=99.61 Aligned_cols=174 Identities=19% Similarity=0.155 Sum_probs=136.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+.+..|.+.+..-+++..+|.++.|+|.++.| .|+|..++|.+.+...+.+....+..-.+++|.-.+|+..+....++
T Consensus 206 ~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~ 284 (395)
T COG2807 206 RSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM 284 (395)
T ss_pred cCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 33567888888889999999999999999975 69999999999999999999999999999998656788888888888
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++.+.+.+.. .+...+. .+++|+|.|..+|....++.+..++.+. -++..++.+-.+.+=+.+||.
T Consensus 285 l~G~~G~~~~P------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 285 LVGLVGLLLAP------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred HHHHHHHHHhh------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHHhhhhhHHHHhhhhh
Confidence 88888877662 1222222 4789999999999999999998765541 444555566666666778999
Q ss_pred HHHHhhcccc-chHHHHHHHHHHHHHHHH
Q 008565 193 VAIYLQDNVG-WAVGFGVMAGALALALAI 220 (561)
Q Consensus 193 l~g~l~~~~g-~~~~f~~~~~~~~i~~~~ 220 (561)
+.|++-|..| |+..++..+...++..+.
T Consensus 352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 352 LFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred hHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999998765 887776665544444333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=110.47 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHH-HHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWV-GISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
..+.+.+..++..+.++....++|.|+++ +|+++.+.+.+.+... ++..++.+++|+++||+ |||+.+..+.++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35566666677788888899999999987 8999999998888766 56789999999999997 999998888877776
Q ss_pred HHHHHHHhhhccc----ccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIP----LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIV 184 (561)
Q Consensus 115 ~~~~~~~~~~~~~----~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (561)
+..+..+...... ...+.+.+....++.+++.+...+...+++.|.+|+++ |++.+++.+...+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 288 TNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence 6554443310000 00134556667778899999999999999999999999 9999999877654
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-08 Score=103.88 Aligned_cols=182 Identities=14% Similarity=0.212 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008565 41 IMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLS 120 (561)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~ 120 (561)
....+.+.+.. +.......-+.+.++++..+.|++.+.+.+++.+...+..|..-|. -|-+.+-+|.++.+++.++..
T Consensus 103 ~~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~a 180 (735)
T KOG3626|consen 103 SLAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFA 180 (735)
T ss_pred HHHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHh
Confidence 34444444444 6667777778899999999999999999999999999999999996 777788888899988888887
Q ss_pred Hhhhc----------------cc---------------------------ccc--hhHHHHHHHHHHHHhccccchhhhh
Q 008565 121 LAVSV----------------IP---------------------------LHY--RKAVFFTALYILAVGEGGHKPCVQT 155 (561)
Q Consensus 121 ~~~~~----------------~~---------------------------~~~--~~~~l~~~~~l~g~g~g~~~~~~~~ 155 (561)
+.-+. .. ..+ -+..++.+.++.|+|.-..++...+
T Consensus 181 lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGis 260 (735)
T KOG3626|consen 181 LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGIS 260 (735)
T ss_pred ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCc
Confidence 65220 00 001 1335678889999999999999999
Q ss_pred HhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc------------------ccc-chHHHHHHHHHHHH
Q 008565 156 FAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD------------------NVG-WAVGFGVMAGALAL 216 (561)
Q Consensus 156 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~------------------~~g-~~~~f~~~~~~~~i 216 (561)
|+=|...+++ -...+|+.+.+..+|.++|.++++++.. +.| |+..|++.+.+.++
T Consensus 261 YiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 261 YIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred cccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999888777 7778899999999999999999887531 123 88888888888888
Q ss_pred HHHHHHHhcccccc
Q 008565 217 ALAIFLIGIKRYRK 230 (561)
Q Consensus 217 ~~~~~~~~~~~~~~ 230 (561)
..+-++.+.++.++
T Consensus 335 ~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 335 SAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHhCcccCcc
Confidence 87777776655443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=105.36 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008565 50 AYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLH 129 (561)
Q Consensus 50 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (561)
.......+.|.|+++++|+++.+.+.+.+...++..++.++.|++.||+ |||+.+.++..+..++.+++.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~------- 289 (392)
T PRK10473 218 VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS------- 289 (392)
T ss_pred HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3334456667888888999999999999999999999999999999997 99999999888888777776665
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGV 209 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~ 209 (561)
.+....+....+.+.|.+...+. ....+..|.++ |+ +..+....++..+++.+++++.+..|+.....+
T Consensus 290 ~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~------~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~ 358 (392)
T PRK10473 290 PSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSL------RA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNML 358 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcc------cc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 23333333333334433322222 33344445443 43 222234456677777777788777777654444
Q ss_pred HHH
Q 008565 210 MAG 212 (561)
Q Consensus 210 ~~~ 212 (561)
.+.
T Consensus 359 ~~~ 361 (392)
T PRK10473 359 IGI 361 (392)
T ss_pred HHH
Confidence 433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.7e-09 Score=122.83 Aligned_cols=172 Identities=10% Similarity=-0.079 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
+.++.+++..++..+..+++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++|++ ++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 4566666666677777778888999999999999999999999999999999999999999986 766665555555444
Q ss_pred HHHHHHHhhhc-------------ccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHH
Q 008565 115 GMVLLSLAVSV-------------IPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYL 181 (561)
Q Consensus 115 ~~~~~~~~~~~-------------~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (561)
+.+.+.+.... .....+.+.+++..++.|++.+...+...+++.+.+|++. |++++|..++
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~ 377 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNV 377 (1140)
T ss_pred HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHH
Confidence 44333321000 0001345566677788899999888899999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-cccchHHHHHHHHH
Q 008565 182 GIVFGASAAVLVAIYLQD-NVGWAVGFGVMAGA 213 (561)
Q Consensus 182 ~~~lG~~igp~l~g~l~~-~~g~~~~f~~~~~~ 213 (561)
...+|..+++.+++.+.+ ..++...|++.++.
T Consensus 378 ~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 378 LNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999998874 45566666554443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-09 Score=109.75 Aligned_cols=176 Identities=15% Similarity=0.107 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCc--------hHHH-
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGR--------FNTI- 105 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr--------k~~~- 105 (561)
+.+|.+.+..++.+.+++.+..++|.|+.+.+|++..+.|++.++..+...+..+++|+++||. -+ ||.+
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999999997 33 2222
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccc-hhhhhHhhhhcccCCCCccccchhhHHHHHHHHH
Q 008565 106 LLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHK-PCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIV 184 (561)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (561)
.++....++..+.+.+. .. .+. ...+..+..+.+..+.. +....-..|.. ++. -+..+++.+...+
T Consensus 337 ~i~~~~~ai~l~~l~~~----~~-~~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~------a~~l~g~~~~~~~ 403 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAFT----SD-EHR-LLAVILLTIAIGLSGFNISGFYKNHQDIA-PQH------AGFVMGIINFVGA 403 (466)
T ss_pred hHHHHHHHHHHHeeeec----CC-Ccc-hHHHHHHHHHHHHcccchhhhHhhhhhcc-chH------HHHHHHHHHHHHH
Confidence 12222222233333333 11 112 11112222222222222 22222223323 344 6788999999999
Q ss_pred HHHHHHHHHHHHhhc---cccchHHHHHHHHHHHHHHHHHHHh
Q 008565 185 FGASAAVLVAIYLQD---NVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 185 lG~~igp~l~g~l~~---~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+.++++|.+.+.+.. ...|+.+|++.++..+++-+.+.++
T Consensus 404 ~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 404 LAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999999999999983 2369999999998887777555444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-08 Score=103.58 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=133.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHH
Q 008565 30 SKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSS 109 (561)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~ 109 (561)
..++++.. ..++..++.....-....+.+.|+++.-|.+....+.+.++..+.-.+.-.+.+++-.|+ |-|+++.++.
T Consensus 203 llk~~~~~-~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~ 280 (400)
T PF03825_consen 203 LLKNPRFL-VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLAL 280 (400)
T ss_pred HhcCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 34455444 344455566666666778889999764447778888888888888888889999999997 9999999998
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHH----HHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHH-HH
Q 008565 110 FIYFMGMVLLSLAVSVIPLHYRKAVF----FTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLG-IV 184 (561)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~ 184 (561)
+..++=..+..... ++.+.. .....++|+..+....+...++.+..|++. |+++-++++.. ..
T Consensus 281 ~~~~vR~~l~a~~~------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~G 348 (400)
T PF03825_consen 281 VAYAVRWLLYAYFS------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFG 348 (400)
T ss_pred HHHHHHHHHHHHhc------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhh
Confidence 88877666665551 232322 233457999999999999999999999999 99999997764 57
Q ss_pred HHHHHHHHHHHHhhccccch------HHHHHHHHHHHHHHHHHHHh
Q 008565 185 FGASAAVLVAIYLQDNVGWA------VGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 185 lG~~igp~l~g~l~~~~g~~------~~f~~~~~~~~i~~~~~~~~ 224 (561)
+|..+|..++|++.|++|-+ ..+.+.++..++..+.++..
T Consensus 349 lg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 349 LGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999987644 34444555444444444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.1e-09 Score=112.47 Aligned_cols=133 Identities=13% Similarity=0.015 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhH
Q 008565 77 VNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTF 156 (561)
Q Consensus 77 ~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~ 156 (561)
.....+...++.++.++++||+ |||+.+.++.++.+++.+++.+.. . .......+..++.+++.+...+..+++
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP----V-DLYFLRTALAVLGKFGITSAFQMVYLY 434 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC----C-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778889999999997 999999998888887777666651 0 112333444455566666667788899
Q ss_pred hhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Q 008565 157 AADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLI 223 (561)
Q Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (561)
.+|.+|++. |++++|+.+....+|++++|.+.+ +.+ .++...+++.++..+++.+..++
T Consensus 435 ~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 435 TAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGILTLF 493 (505)
T ss_pred hcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHHc
Confidence 999999999 999999999999999999999988 443 45666776666665555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=102.66 Aligned_cols=149 Identities=7% Similarity=-0.008 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
..+..++..++.....+....+.|.++.+.+|+++.+.+.+.+...++..++.++.|+++||+ |||+.+.++..+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 344444455555566666777778888888999999999999999999999999999999997 9999998887665443
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHH-HHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLG-IVFGASAAVLVA 194 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~lG~~igp~l~ 194 (561)
.+.+..... .+.+.+...+...+.+.+.+...+.....+.|..| ++ +++..+..+.. ..+|..+++.++
T Consensus 274 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 274 GIWLVVSAL---LDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222100 00123333334334444444444555566677666 55 77888875543 456677776554
Q ss_pred H
Q 008565 195 I 195 (561)
Q Consensus 195 g 195 (561)
+
T Consensus 344 ~ 344 (377)
T PRK11102 344 L 344 (377)
T ss_pred h
Confidence 4
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=109.07 Aligned_cols=176 Identities=16% Similarity=0.101 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccC--chHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLG--RFNTILLSSFIY 112 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G--rk~~~~~~~~~~ 112 (561)
+.++.+.+...+..++++....++|.|.. ..+.+..++..++++..+...++.++.|+++|+. . ++.+..++++..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 45677777888888999999999999987 7899999999999999999999999999999996 6 444566667767
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.++...+.+. ++...++..-++.|++.|...+.....+.|..+.++ -..++|+......++..+||.
T Consensus 376 gl~~~~~p~~-------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~gpP 442 (509)
T KOG2504|consen 376 GLARLFLPFA-------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALVGPP 442 (509)
T ss_pred HHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHcCcc
Confidence 7777677777 678888888889999999888888889999999998 889999999999999999999
Q ss_pred HHHHhhcccc-chHHHHHHHHHHHHHHHHHHHhc
Q 008565 193 VAIYLQDNVG-WAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 193 l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
++|++.|..| |...|+..++..+++....+...
T Consensus 443 iag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 443 IAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999888 99999999988877776655544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-08 Score=100.79 Aligned_cols=154 Identities=12% Similarity=-0.018 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 008565 43 VEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLA 122 (561)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~ 122 (561)
...+....++....+.|.|++ +.|++..+.++......++..++..+.+++.||+ |+|+.........+++.+.+...
T Consensus 211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556667778888876 4799999999888888888889999999999997 99987766655555444333222
Q ss_pred hhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008565 123 VSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVG 202 (561)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g 202 (561)
.. ...++....++...+.+++.+...+...+...|..| ++ |+++.++.+.....++..++.+.|.+.+...
T Consensus 289 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 289 SL--LSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HH--hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 10 001234444555667788888888887777777765 45 8999999998888888889889998877544
Q ss_pred chHHH
Q 008565 203 WAVGF 207 (561)
Q Consensus 203 ~~~~f 207 (561)
....+
T Consensus 360 ~~~~~ 364 (401)
T PRK11043 360 LTTGS 364 (401)
T ss_pred hHHHH
Confidence 44333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-08 Score=99.85 Aligned_cols=176 Identities=13% Similarity=0.136 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLN---EPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
|++|.+.+........|+....-.+.|....++ .+....|.+.+...+..++.-.+..++.+|+ |.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 567777666666666777777778888875443 3445578888888999999999999999997 999999999888
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHH-HHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNW-WYLGIVFGASAA 190 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ig 190 (561)
..+=.+.+++. ++++.+.+...+.++-.+.......-++++.+|++. .++...+ .+.+..+|..+.
T Consensus 299 ~~iRi~~~~~~-------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 299 MAIRIIGSGFA-------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp HHHHHHHHHT---------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHH
Confidence 88777888888 688999999999999999988999999999999987 7788877 578889999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+.++|++.|+.|++..|++.+.+++...+...+.
T Consensus 366 s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 366 SPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence 9999999999999999988877665554444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=105.52 Aligned_cols=165 Identities=15% Similarity=0.034 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|.++.+++..++.++..+....+.+.|.+..++ +....+.+.+...++..++.++.++++||+ |||+.+.++..+.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 556666677777777777666666655444333 555667777777788889999999999997 999999988877666
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCc-cccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKD-KGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+.+....... ....+.+.+++..++.+++.+...+...++++|..+.++.+. +...+..+|...+...+|..+++.+
T Consensus 309 ~~~~~~~~~~--~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 309 SCGVLLLMGL--AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHHHhc--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6555433210 011345556666677888888888899999999977543111 1114557788889999999999999
Q ss_pred HHHhhccccc
Q 008565 194 AIYLQDNVGW 203 (561)
Q Consensus 194 ~g~l~~~~g~ 203 (561)
.|++.+..||
T Consensus 387 ~g~~l~~~Gy 396 (473)
T PRK10429 387 IGVVLGLIGY 396 (473)
T ss_pred HHHHHHHcCC
Confidence 9998876666
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.5e-08 Score=100.58 Aligned_cols=164 Identities=11% Similarity=-0.007 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVL-NEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l-g~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.+......++......+..++++.|+.+.. +.+....+...+.+..+..++.+++|+++||+ ++|+++.++.++.++.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 344444555554555567789999986532 45555556677777788889999999999997 9999988888877777
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.++.... ++... .....+.+++.+.++|...+...+..+++. +..+..+. + ..+|+.+.|.+.|
T Consensus 313 ~ll~~~~-------~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~l~-~-~~~Gga~~p~l~G 376 (410)
T TIGR00885 313 CLGSIFA-------GGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAGLV-M-AIIGGGIVPPLQG 376 (410)
T ss_pred HHHHHHc-------CChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHHHH-H-HHhccchHHHHHH
Confidence 7777665 23333 455567778888888999999999988765 33233332 2 3499999999999
Q ss_pred Hhhccc------cchHHHHHHHHHHHHH
Q 008565 196 YLQDNV------GWAVGFGVMAGALALA 217 (561)
Q Consensus 196 ~l~~~~------g~~~~f~~~~~~~~i~ 217 (561)
++.|.. +.+..|++..++.+..
T Consensus 377 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 377 FIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHHHhcccccCccchHHHHHHHHHHHH
Confidence 999953 4778888766554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-08 Score=104.54 Aligned_cols=160 Identities=12% Similarity=0.077 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
.+.++...++...+........+.|.+..++ ++...+.+.....+...++.+++++++||+ |||+.+..+.++.++..
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 4444445555444443333333333333333 233344556666777788899999999997 99999988876665444
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCcc-ccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDK-GAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
+...+.. .++.+.+++..++.|++.+...+...++++|..+.++.+.. ...+..++.++....+|..+|+.++|
T Consensus 309 ~~~~~~~-----~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 309 ALIFFIP-----PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred HHHHHhC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333321 13566667777889999999999999999999875432111 11455678888999999999999999
Q ss_pred Hhhccccc
Q 008565 196 YLQDNVGW 203 (561)
Q Consensus 196 ~l~~~~g~ 203 (561)
++.+..||
T Consensus 384 ~ll~~~Gy 391 (444)
T PRK09669 384 WILAWVDY 391 (444)
T ss_pred HHHHHcCC
Confidence 98887776
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-10 Score=121.48 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008565 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLL 119 (561)
Q Consensus 40 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~ 119 (561)
+++..+.+ ....+.......-++++++++.+++|++.+.+.++..+..++..|..+|. -|-|-+-.|.++.+++++++
T Consensus 8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHH
Confidence 34444455 55556666666678899999999999999999999999999999999995 67777888888888888887
Q ss_pred HHhhhcc---------------------c----------------------ccchhHHHHHHHHHHHHhccccchhhhhH
Q 008565 120 SLAVSVI---------------------P----------------------LHYRKAVFFTALYILAVGEGGHKPCVQTF 156 (561)
Q Consensus 120 ~~~~~~~---------------------~----------------------~~~~~~~l~~~~~l~g~g~g~~~~~~~~~ 156 (561)
.+.-+.. - .+.-...++++.++.|+|....++...+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 6653310 0 00013567788899999999999999999
Q ss_pred hhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc---------------------ccc-chHHHHHHHHHH
Q 008565 157 AADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD---------------------NVG-WAVGFGVMAGAL 214 (561)
Q Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~---------------------~~g-~~~~f~~~~~~~ 214 (561)
+=|..++++ -+...|+.+.+..+|.++|..+++.... +.| |+..|++.+++.
T Consensus 166 iDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 166 IDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999988 7788999999999999999988886531 123 778887777776
Q ss_pred HHHHHHHHHhccccccc
Q 008565 215 ALALAIFLIGIKRYRKQ 231 (561)
Q Consensus 215 ~i~~~~~~~~~~~~~~~ 231 (561)
++..+-++.+.|+.++.
T Consensus 240 ~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp -----------------
T ss_pred HHHHHHHHcCCccCCCc
Confidence 66666666655554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-07 Score=96.99 Aligned_cols=145 Identities=10% Similarity=-0.054 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008565 49 FAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPL 128 (561)
Q Consensus 49 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (561)
..........+.|+++.+|.++.+.+++......+..++.++.+++.||+ +|+... +.....++.+....... ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~--~~ 295 (394)
T PRK11652 221 AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGW--FG 295 (394)
T ss_pred HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHH--hc
Confidence 33434455667788888999999999998888888889999999999997 743322 22222222222211100 00
Q ss_pred cchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchH
Q 008565 129 HYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAV 205 (561)
Q Consensus 129 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~ 205 (561)
..+.+.+.....+.+++.+...|...++..|.+| ++ +++..++.+...++|..+++.+++.+.+...+..
T Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 365 (394)
T PRK11652 296 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSL 365 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence 0234556667788888888888999999989887 45 8888899998999999999999998876544443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-06 Score=87.31 Aligned_cols=105 Identities=5% Similarity=-0.037 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhH
Q 008565 77 VNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTF 156 (561)
Q Consensus 77 ~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~ 156 (561)
.++......+..++++.+.|+. |.|..+.++...+..--+.+.+. |.+.++..-.+.|+|.+..+.....+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~--------N~y~~yfssallG~Gaallw~GqG~y 126 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP--------NSYYLYFSSALLGFGAALLWTGQGGY 126 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc--------chHHHHHHHHHhhhhHHheeccccee
Confidence 7777777889999999999996 99999999988887777777666 67788888899999999999999999
Q ss_pred hhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 157 AADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
++|..+++. +.+..++.......+.++|..+...
T Consensus 127 lt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 127 LTSNSTRET------IERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred hhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhhee
Confidence 999999888 8888988888888888777655443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-08 Score=100.93 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
.+.+....++.....+.+..++|.|+++.+|.++.+.+.+.+...+...++.+++|+++||+ |||+.+..+....+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 45555555666666778889999999999999999999999999999999999999999997 99988877776666665
Q ss_pred HHHHHhhhcccccc-hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHY-RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFG 186 (561)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 186 (561)
.++.+.. .++ +.....+...+.+++.|...+...+++++.+| ++ +++..|+.+...++|
T Consensus 306 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 306 FLVVLGL----VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHhcC----CCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHHHHhccCC
Confidence 5554431 111 44444455555666666666777888888887 45 889999888777665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-07 Score=91.72 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008565 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLL 119 (561)
Q Consensus 40 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~ 119 (561)
.+...++..+++.+--..+-+|-.+.+|++..|...+......+..++-...|++..|-.++++...+++...+++..+.
T Consensus 213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI 292 (403)
T ss_pred HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 33444556677777778899999999999999999999999999999999999998855588888888988888887776
Q ss_pred HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 120 SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~ 199 (561)
.++.. ..+.+.+....++.|++.|.......+.+.|..++++ .+..+|.+..+..+...+|..++|.+.|
T Consensus 293 i~a~~----~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 293 ILAGP----LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHHh----cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66632 2567888899999999999999999999999998888 8899999999999999999999987654
Q ss_pred c----------ccchHHHHHHHHHHHHHHHHHH
Q 008565 200 N----------VGWAVGFGVMAGALALALAIFL 222 (561)
Q Consensus 200 ~----------~g~~~~f~~~~~~~~i~~~~~~ 222 (561)
- .+|..+|.+-++..++++.+..
T Consensus 363 ~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 363 LVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3466666666666655555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-08 Score=98.23 Aligned_cols=181 Identities=12% Similarity=-0.003 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccC--chHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLG--RFNTILLSSFIYFM 114 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G--rk~~~~~~~~~~~~ 114 (561)
++...+.--..+......-+.++++..|.+..+..+.|....-..+.+.++..+.|.++||+ + |......+++...+
T Consensus 272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~ 350 (464)
T KOG3764|consen 272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGV 350 (464)
T ss_pred HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence 44444333344555556678889999999885556899998889999999999999999998 8 76666677776666
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+....+. +++..+++-+...+++.+...++......++.+.++...-.-.+..+++...+..+|..+||.++
T Consensus 351 ~~~~iP~~-------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~g 423 (464)
T KOG3764|consen 351 SSGPIPFA-------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFG 423 (464)
T ss_pred HhchhHhh-------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcccccc
Confidence 66777777 68888988888888888888888888888888777654222378899999999999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 195 IYLQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
|.+.+.+|++|.-.+.++..++-.-++.+.+
T Consensus 424 g~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 424 GSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred chheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777776655544444443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.6e-07 Score=93.49 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=100.3
Q ss_pred cccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHH
Q 008565 373 SLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYL 452 (561)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (561)
.....+-.+=+...++..|..++.+....+..|+.+..+-++.+.+++ ++|.+++.-+
T Consensus 410 v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~----------------------n~W~vLPiei 467 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ----------------------NPWMVLPIEI 467 (618)
T ss_pred ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc----------------------CchheeeHHH
Confidence 333444444455555555556666666778889988888888877763 7788999999
Q ss_pred HHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHH-HhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHH
Q 008565 453 LVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYIS-IIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGL 531 (561)
Q Consensus 453 l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~-~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 531 (561)
+.|+..+.+....-+|+...+||+++.+++++.+. .-++|-.+|+++.|.+.+.- +....|+.++..
T Consensus 468 lqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f------------g~~ttf~~~giA 535 (618)
T KOG3762|consen 468 LQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF------------GARTTFRIFGIA 535 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee------------hhHHHHHHHHHH
Confidence 99999999999999999999999999999999886 46778888888888887621 223456665555
Q ss_pred HHHHHHHHHHH
Q 008565 532 SALNLCVFIWI 542 (561)
Q Consensus 532 ~~~~~~~~~~~ 542 (561)
+++.+++...+
T Consensus 536 cl~~l~~~~~i 546 (618)
T KOG3762|consen 536 CLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHHh
Confidence 55555554444
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.6e-07 Score=93.32 Aligned_cols=195 Identities=14% Similarity=0.013 Sum_probs=141.9
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChh------h----hhHHHHHHHHHHHHhhhHHHHHhh
Q 008565 28 ISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTN-VLNEPTA------T----AAQDVNNWVGISSIFPLLGAFVAD 96 (561)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~------~----~~~~~~~~~~~~~~~~~~~G~lsD 96 (561)
+..+.-||.++.++..+++..++++.+..+.+.|+.+ .++-++. + ..+...++.+.+.+.+++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999999999999999999875 3443221 1 234444445555566667778899
Q ss_pred hccCc-hHHHHHHHHHHHHHHHHHHHhhhc-------------ccccc-hhHHHHHHHHHHHHhccccchhhhhHhhhhc
Q 008565 97 SYLGR-FNTILLSSFIYFMGMVLLSLAVSV-------------IPLHY-RKAVFFTALYILAVGEGGHKPCVQTFAADQF 161 (561)
Q Consensus 97 r~~Gr-k~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~ 161 (561)
|+ |+ |+...++.++.+++.....+.... ...+. ..+..++...+.|+..+...+..++++++..
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~ 409 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRS 409 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc
Confidence 97 85 666688888888777777655210 00000 0355666777899999999999999999999
Q ss_pred ccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHhccc
Q 008565 162 DERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVG--WAVGFGVMAGALALALAIFLIGIKR 227 (561)
Q Consensus 162 ~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g--~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (561)
+++..+ .|..+|+.|.+..+.+++.....|.+.+..| -.+.+.+.++.++++.+..++..|+
T Consensus 410 ~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 410 SNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred cccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 854321 6899999999999999999988888665554 5577888888888887777766654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.1e-06 Score=83.51 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=119.5
Q ss_pred HHHHHHHHHHh-cCCChhhhh-HHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchh
Q 008565 55 AGNLIQYLTNV-LNEPTATAA-QDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRK 132 (561)
Q Consensus 55 ~~~l~~yl~~~-lg~s~~~~~-~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (561)
-|++..|+.+. .|++..|.. -+.-+..-.+....++...++|.+ |.|++++++.+...+.-.++.+. ++.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~-------~sv 94 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG-------TSV 94 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH-------CcH
Confidence 36788899886 899998874 455555666677788889999986 99999999888888877777777 688
Q ss_pred HHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc--cccchHHHHHH
Q 008565 133 AVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD--NVGWAVGFGVM 210 (561)
Q Consensus 133 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~--~~g~~~~f~~~ 210 (561)
..+-+..++.|++.+. ..+..+++=...|+++ -.++.+....+.-+|-.++..++-.+.. ..++...+++.
T Consensus 95 ~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~is 167 (412)
T PF01770_consen 95 LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYIS 167 (412)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8888999999988775 4666677777777776 7788888888888888888877766654 34566777777
Q ss_pred HHHHHHHHHHHHHhc
Q 008565 211 AGALALALAIFLIGI 225 (561)
Q Consensus 211 ~~~~~i~~~~~~~~~ 225 (561)
.....++.+..+++.
T Consensus 168 l~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 168 LASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHHHHHHHHcC
Confidence 776667666655543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-06 Score=90.87 Aligned_cols=173 Identities=14% Similarity=0.023 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|.++......++....++....+.|.|+++.+|.++.+.++.......+..++..+.+++.++. ++++.......+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 4566666666677777778888889999999999999999998888888888888888876554 444444333333333
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
+..++..... ...+++...++..++.++|.+...|...+..- .+.+.+ ++++.++.+.....+...++...
T Consensus 297 g~~l~~~~~~--~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~a~~~~~~~~~~~~~~~~~ 367 (413)
T PRK15403 297 GLALLIVGNL--LWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVSASLNMVILMVMAVSVEIG 367 (413)
T ss_pred HHHHHHHHHH--HccccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322210 00123333456777788888877777664332 322221 67777888888888888888888
Q ss_pred HHhhccccchHHHHHHHHHHHHHH
Q 008565 195 IYLQDNVGWAVGFGVMAGALALAL 218 (561)
Q Consensus 195 g~l~~~~g~~~~f~~~~~~~~i~~ 218 (561)
+++.++ +-...|....+...+.+
T Consensus 368 g~~~~~-~~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 368 RWLWFN-GGRLPFHLLAVVAGVIV 390 (413)
T ss_pred HHHHHc-CCchHHHHHHHHHHHHH
Confidence 988765 55666655555444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=92.13 Aligned_cols=183 Identities=10% Similarity=0.019 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh----hhHHHHHHHHHHHHhhhHHH----HHhhhccCchHH--HHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTAT----AAQDVNNWVGISSIFPLLGA----FVADSYLGRFNT--ILL 107 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~----~~~~~~~~~~~~~~~~~~~G----~lsDr~~Grk~~--~~~ 107 (561)
+.++....+-...+.-..+.++.|.+++.+.+... .+++.+...+...+.+|+.. ++.||..+.+.. +.+
T Consensus 275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~ 354 (475)
T TIGR00924 275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL 354 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 33444444555666566677888887765544322 56777777777777776655 445541122333 367
Q ss_pred HHHHHHHHHHHHHHhhhcc--cccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH
Q 008565 108 SSFIYFMGMVLLSLAVSVI--PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF 185 (561)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 185 (561)
|+++..++...+.+..... ....+.+.++...++.++|.....|...+++.+..|++. |++.+|++.....+
T Consensus 355 G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~~~l~~~~ 428 (475)
T TIGR00924 355 GMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGMWFLAQAM 428 (475)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHH
Confidence 7777777776665421100 112478888899999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 186 GASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 186 G~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
|..+++.+.....+..+|...|...++..++..+++++..|
T Consensus 429 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 429 GSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777677887777777666655555555444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.1e-06 Score=77.39 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=98.2
Q ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHH
Q 008565 60 QYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTAL 139 (561)
Q Consensus 60 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (561)
.|+.+.+|+...+.+.+........+++..+.|-++||- |||+..+..++.+ ++.... -+++..-.++++|
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitY----iLsCiT----KhSpqYkVLmVGR 131 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITY----ILSCIT----KHSPQYKVLMVGR 131 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHH----HHHHHh----hcCCceEEEeehh
Confidence 456678899999999888888777888888889999996 9999766544433 333333 2235666788999
Q ss_pred HHHHHhccccchhhhh-HhhhhcccCCCCccccchhhHHH-HHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHH
Q 008565 140 YILAVGEGGHKPCVQT-FAADQFDERNPKDKGAKSSFFNW-WYLGIVFGASAAVLVAIYLQDNV--GWAVGFGVMAGALA 215 (561)
Q Consensus 140 ~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~igp~l~g~l~~~~--g~~~~f~~~~~~~~ 215 (561)
.+-|+..+...++.-+ +++|+-+++.-.+. =...-++- ...+..+-++++...+-.+.+.+ |--.+|-.+++...
T Consensus 132 ~LGGiaTsLLFSaFEsWliaEHnekr~Feqq-Wls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLa 210 (454)
T KOG4332|consen 132 VLGGIATSLLFSAFESWLIAEHNEKRGFEQQ-WLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLA 210 (454)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccCChHh-hhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 9999999888877665 67787654431110 01111111 11222333444444444555554 45567777777777
Q ss_pred HHHHHHHHh
Q 008565 216 LALAIFLIG 224 (561)
Q Consensus 216 i~~~~~~~~ 224 (561)
+++.+.+..
T Consensus 211 igmAvil~~ 219 (454)
T KOG4332|consen 211 IGMAVILSS 219 (454)
T ss_pred HHHHHHHhh
Confidence 776665543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-06 Score=90.53 Aligned_cols=158 Identities=10% Similarity=0.062 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008565 39 FIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVL 118 (561)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~ 118 (561)
.++...++..............|.+..+|. ....+.+...+.++..++.+++++++||+ |||+++..+....++..++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~ 309 (460)
T PRK11462 232 IVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLA 309 (460)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333333333443 33455677788888899999999999997 9998877555544443333
Q ss_pred HHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccc-hhhHHHHHHHHHHHHHHHHHHHHHh
Q 008565 119 LSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAK-SSFFNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~lG~~igp~l~g~l 197 (561)
..+.. ..+...+++..++.|++.+...+...++++|..+.++-+...+| +..++.......+|..+|+.++|++
T Consensus 310 ~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 310 MFFVP-----MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHhc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 02232334444566777776667778888888774421111112 3345667788899999999999988
Q ss_pred hccccc
Q 008565 198 QDNVGW 203 (561)
Q Consensus 198 ~~~~g~ 203 (561)
.+..||
T Consensus 385 L~~~Gy 390 (460)
T PRK11462 385 LAYGGY 390 (460)
T ss_pred HHHcCC
Confidence 765555
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-06 Score=75.11 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHh
Q 008565 378 VGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSIC 457 (561)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 457 (561)
..++..+..++..+..+|.++++.+..+..+..++.+..... .+.+......++.+++
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~ 64 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS----------------------SNITVLIIARFLQGFG 64 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHH
Confidence 345555566665555555666667777777777766655443 2345566677888999
Q ss_pred hhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHH
Q 008565 458 DVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLC 537 (561)
Q Consensus 458 ~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 537 (561)
.+...+....++.|..|++.|+++.++.++...+|..+++.+.+.+.+.. ++...+++.+.+.++..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 65 AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL------------GWRAPFLFLAILALAAFI 132 (141)
T ss_pred HHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc------------chHHHHHHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999999999887621 223456666666666665
Q ss_pred HHHHH
Q 008565 538 VFIWI 542 (561)
Q Consensus 538 ~~~~~ 542 (561)
..+..
T Consensus 133 ~~~~~ 137 (141)
T TIGR00880 133 LLAFL 137 (141)
T ss_pred HHhhc
Confidence 55444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=90.79 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
+..+++..++...+.....+....|.+..+|.+.....+.......+..++.++..++++|+ |||+++.++.++.+++.
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGY 316 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 44445566666666666667777777778888888888888888888888899999999997 99999999999999999
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCcccc-chhhHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGA-KSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
++..+.. .++...+++..++.++|.+...+...++++|..+.++-+...+ -|..++.+....-+|.+++..+.|
T Consensus 317 ~~~~f~~-----~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 317 LLLYFTP-----AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred HHHHhhc-----CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9888872 2467788888899999999999999999999877654322222 344556677888899999988888
Q ss_pred Hhhccccc
Q 008565 196 YLQDNVGW 203 (561)
Q Consensus 196 ~l~~~~g~ 203 (561)
++.+..||
T Consensus 392 ~~L~~~Gy 399 (467)
T COG2211 392 WILGAIGY 399 (467)
T ss_pred HHHHHcCC
Confidence 88766554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-06 Score=84.74 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
.+.-.+..|+---.--++.++++.|+.+..|++..++...++.+..+.++|..++-++..|+ ...|.+.+......+-+
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 33333444444333445668999999988999999999999999999999999999999997 88888877665555555
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
+...+. ++... +...++.|+..+.++|...+...+..|++.. ..|..-.+..+|+++-|.+.|+
T Consensus 317 ~~~~l~-------~g~v~-~~~l~~ig~F~simfPTIfslal~~l~~~ts--------~~s~~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 317 LAVALI-------GGVVA-LYALFLIGLFNSIMFPTIFSLALKNLGEHTS--------VGSGLLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred HHHHHh-------cChHH-HHHHHHHHHHhHHHHHHHHHHHHhccCcccc--------ccceeeeeheecchHHHHHHHH
Confidence 555555 34333 3455678899999999999999999984431 2222334566888899999999
Q ss_pred hhccccchHHHH
Q 008565 197 LQDNVGWAVGFG 208 (561)
Q Consensus 197 l~~~~g~~~~f~ 208 (561)
+.|..|-...+.
T Consensus 381 i~d~~g~~~~~~ 392 (422)
T COG0738 381 IADMFGIQLTFL 392 (422)
T ss_pred HHHhhhhHHHHH
Confidence 999999887776
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.3e-06 Score=78.84 Aligned_cols=165 Identities=12% Similarity=0.022 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008565 51 YYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHY 130 (561)
Q Consensus 51 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (561)
.|....|- ..+++++|+|.+|...+.....++..++ ++.|.+.|++ |.+.++++|.+...+|...++..........
T Consensus 18 ~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~ 94 (250)
T PF06813_consen 18 TYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRIPSL 94 (250)
T ss_pred ccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCccCcc
Confidence 44444333 5578899999999999999999998875 7789999997 9999999999999999988887642212223
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Q 008565 131 RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVM 210 (561)
Q Consensus 131 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~ 210 (561)
+.+.+.+...+.+.+.+...........+.||. + ||++.|+.-....+++.+-..+...+.+.-.-...+.+.
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la 167 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLA 167 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 456666666666666555556666666788984 5 999999977777776665555554444332233333333
Q ss_pred HHHHHHHHHHHHHhc
Q 008565 211 AGALALALAIFLIGI 225 (561)
Q Consensus 211 ~~~~~i~~~~~~~~~ 225 (561)
....++.++.....+
T Consensus 168 ~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 168 VLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHhhhee
Confidence 333444444444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-07 Score=95.57 Aligned_cols=149 Identities=19% Similarity=0.159 Sum_probs=121.7
Q ss_pred ccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHH
Q 008565 372 ASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQY 451 (561)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (561)
+.++..-.++..++.|+..-..+|..++..+.+|.++..++.+.-++.. .+|.+.+.-
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~----------------------~Fwq~~l~R 128 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN----------------------HFWQVLLCR 128 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH----------------------HHHHHHHHH
Confidence 3555555666777888877777777788889999999999988877753 677888888
Q ss_pred HHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHH
Q 008565 452 LLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGL 531 (561)
Q Consensus 452 ~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 531 (561)
.+.|+|+..+.|....+++|.+|.+.|++..+++++...+|+.+|-.+..++...+ +++.+.|+..+++
T Consensus 129 ~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----------~~Wr~af~~~avl 197 (493)
T KOG1330|consen 129 GFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----------FWWRWAFRGSAVL 197 (493)
T ss_pred HHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----------cceEEEEEeehHH
Confidence 99999999999999999999999999999999999999999999998888886643 2234567888999
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q 008565 532 SALNLCVFIWIAKRFVYKKVLE 553 (561)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~ 553 (561)
+++..++..++.++.+++..++
T Consensus 198 ~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 198 GVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred HHHHHHHHHhhccCcccccccc
Confidence 9999888888877765544443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0004 Score=72.39 Aligned_cols=189 Identities=12% Similarity=-0.040 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|..+.+...+++.+.+-=+...-.+.|+.+-+.-+-.-++..--.-.+...++.+.-|.+.||. .|.++...+++..-+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL 80 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence 4556677888888888777777888888876543444445555555666677888889999997 999987777665433
Q ss_pred HHHH----HHHhhhcccc----cchhHHHHHHHHHHH-HhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH
Q 008565 115 GMVL----LSLAVSVIPL----HYRKAVFFTALYILA-VGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF 185 (561)
Q Consensus 115 ~~~~----~~~~~~~~~~----~~~~~~l~~~~~l~g-~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 185 (561)
+... +......... ......+++...+.+ +..=+......++=.|+...-..++...+.+..+.+.=.=-+
T Consensus 81 sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ 160 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF 160 (432)
T ss_pred HHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence 2222 1111100000 011111222222222 111111122223334443322222222366666666666677
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 186 GASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 186 G~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
.-++||++.|.+.+..+......+.++..++++..=+++
T Consensus 161 ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 161 CKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988888877777776666666654433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=79.39 Aligned_cols=153 Identities=21% Similarity=0.263 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCh--hhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008565 49 FAYYGLAGNLIQYLTNVLNEPT--ATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVI 126 (561)
Q Consensus 49 ~~~~~~~~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~ 126 (561)
..........+.+.. +++.+. ...++..+.+.+...++.++.|+++||+ |||+.+..+.....++.+...+..
T Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--- 90 (338)
T COG0477 16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAP--- 90 (338)
T ss_pred HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCc---
Confidence 333334445555544 445444 4789999999999999999999999998 999888888776555555555551
Q ss_pred cccchhHHHHHHHHHHHHhccccchhhhhHhhhhccc-CCCCccccchhhHHHHHH-HHHHHHHHHHHHHHHhhcc--cc
Q 008565 127 PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDE-RNPKDKGAKSSFFNWWYL-GIVFGASAAVLVAIYLQDN--VG 202 (561)
Q Consensus 127 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~lG~~igp~l~g~l~~~--~g 202 (561)
. .+...+.+.|++.|++.+...+...+++.|.+|+ ++ |+...+.... ...+|..++|.+++.+... .+
T Consensus 91 -~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (338)
T COG0477 91 -N-VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG 162 (338)
T ss_pred -c-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 2477888899889999998889999999999997 44 8888888777 5888889998777776654 56
Q ss_pred chHHHHHHHHHH
Q 008565 203 WAVGFGVMAGAL 214 (561)
Q Consensus 203 ~~~~f~~~~~~~ 214 (561)
|+..|.+.....
T Consensus 163 ~~~~~~~~~~~~ 174 (338)
T COG0477 163 WRAAFLLAALLG 174 (338)
T ss_pred hHHHHHHHHHHH
Confidence 888555554433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0009 Score=70.62 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=100.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hhhhhHHHHHHHHHHHHh-hhHHHHHhhhccCchHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEP-----TATAAQDVNNWVGISSIF-PLLGAFVADSYLGRFNTILL 107 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-----~~~~~~~~~~~~~~~~~~-~~~~G~lsDr~~Grk~~~~~ 107 (561)
.|+++......|+..+.|+.+-+ +.|.+..+ .....++.+...+...+. .++.+++++|+ +|++.+-+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 35566666666777777765544 56666553 345677777666665544 88899999997 99999888
Q ss_pred HHHHHHHHHHHHHHhhhccccc---------------c---------hhHHHHHHHHHHHHhccccch-hhhhHhhhhcc
Q 008565 108 SSFIYFMGMVLLSLAVSVIPLH---------------Y---------RKAVFFTALYILAVGEGGHKP-CVQTFAADQFD 162 (561)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~---------------~---------~~~~l~~~~~l~g~g~g~~~~-~~~~~~~~~~~ 162 (561)
....++....++.+...|.... . +.|...+.-+...+-.....+ .-.+++.|.+.
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t 159 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT 159 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7777776666655552221000 0 011111111112222222333 66889999999
Q ss_pred cCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 163 ERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQ 198 (561)
Q Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~ 198 (561)
.++ -.|.++++..+.|+|.++++.+..++.
T Consensus 160 ~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 160 IDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 778999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-09 Score=113.47 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
.....+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.||+ |||+.++.+..+.+++
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344444444444444433333444444556676665 2233344455667778888999997 9999999998887777
Q ss_pred HHHHHHhhhcccccc---hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHY---RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVL 192 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~---~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 192 (561)
.+.+..........+ +...+....+..........+....+.+|.+|.+. |+++.++.+....++..++|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~ 403 (451)
T PF00083_consen 330 SLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPF 403 (451)
T ss_pred ccccccccccccccccccccccceeeeeccccccccccccccccccccccccc------ccccccccccccccccccccc
Confidence 666641000001110 12222222111111122344666788999999999 999999998888999999998
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccc
Q 008565 193 VAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRK 230 (561)
Q Consensus 193 l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 230 (561)
+...+.+..+-...|.+.++..++..+..+.+.||.+.
T Consensus 404 ~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 404 LFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred ccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 88888877763455555565555555555555565443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-06 Score=91.99 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc---cCchHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY---LGRFNTILLSSFI 111 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grk~~~~~~~~~ 111 (561)
+.+|...+..++.....|++..|+|.|+.+..|+|..+++.+...+.++.+++.+++|+++||. ..+|..+...+.+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3578888899999999999999999999986779999999999999999999999999999993 1555555554444
Q ss_pred HHH-HHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH-
Q 008565 112 YFM-GMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA- 189 (561)
Q Consensus 112 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i- 189 (561)
..+ +.+.+... ..........+....+.+...+....-..+....+. +|.+..+.+..+.+.+.++
T Consensus 353 ~~~~g~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~~~~~i~~~~s~~~~~ 420 (495)
T KOG2533|consen 353 YAIIGAISLLAA-------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTTVSAIIDGTGSAGAIS 420 (495)
T ss_pred HHHHHHHHHHhh-------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHHHhhhhcchhHHHHhh
Confidence 333 32333332 122222222222223323333333333344443332 1444555544444444443
Q ss_pred HHHHHHHhhccccchHHHHHHH
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMA 211 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~ 211 (561)
++..-+....+++|...|+...
T Consensus 421 ~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 421 GQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred hhhcccccCcchhhhhHHHHHH
Confidence 3334444455567888884443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-06 Score=86.32 Aligned_cols=166 Identities=10% Similarity=0.006 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh
Q 008565 44 EMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAV 123 (561)
Q Consensus 44 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~ 123 (561)
..+..++.-.+.+++--+++ +.+-.+.--|........+-++.-++.+++-.|+ |+-+++.++++++.+=.+.+.+.
T Consensus 380 av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L- 456 (618)
T KOG3762|consen 380 AVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL- 456 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh-
Confidence 33344444455566655664 5676666677777777788888899999999997 99999999999999888888888
Q ss_pred hcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHH-HHHHHHHHHHHHHHHhhcccc
Q 008565 124 SVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYL-GIVFGASAAVLVAIYLQDNVG 202 (561)
Q Consensus 124 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~lG~~igp~l~g~l~~~~g 202 (561)
+|+|+.+..-+++|+..+..+.+..+++++..|++. |.++-++.+. .-.+|-.+|.+++|.+.+++|
T Consensus 457 ------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg 524 (618)
T KOG3762|consen 457 ------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFG 524 (618)
T ss_pred ------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence 799999999999999999999999999999999998 8888888555 448899999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHh
Q 008565 203 WAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 203 ~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
-+..|.+.++..++.++.....
T Consensus 525 ~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 525 ARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 8999988887766665555444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00071 Score=69.43 Aligned_cols=130 Identities=14% Similarity=0.116 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhh
Q 008565 75 QDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQ 154 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~ 154 (561)
.+...-.+...+..+.+-+..+|+ .-+.=.....++.+++.++..++ ++.+.-+++..+.+++.|..-....
T Consensus 63 ~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~-------~~v~~~l~Gv~las~ssg~GE~tfL 134 (402)
T PF02487_consen 63 AVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS-------PSVWVRLLGVVLASLSSGLGEVTFL 134 (402)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec-------cchhHHHHHHHHHhhhhhhhHHHHH
Confidence 344445556667777788888886 53333334445666777777776 5777777888888888887777766
Q ss_pred hHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHh
Q 008565 155 TFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVG--WAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g--~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
++.. .+++. ..+.+..+...++++|+..-..+.+ .| .+..+.+..+..++.++.+++.
T Consensus 135 ~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 135 SLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred HHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6644 56543 2445555666667777665555555 44 4556666665554444444433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-05 Score=83.86 Aligned_cols=176 Identities=13% Similarity=0.016 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hcCCCh------hhhhHHHHHHHHHHHHhhhHH----HHHhhhccCchHHHHHHHHH
Q 008565 44 EMAQRFAYYGLAGNLIQYLTN--VLNEPT------ATAAQDVNNWVGISSIFPLLG----AFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 44 ~~~~~~~~~~~~~~l~~yl~~--~lg~s~------~~~~~~~~~~~~~~~~~~~~~----G~lsDr~~Grk~~~~~~~~~ 111 (561)
.++....+|.+..-++.++.. ..+.+. ...+++.+...+...+..++. +++.||+ +..+.+.+++++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence 345556666666666666543 111111 124556666665555666665 5556664 666788888898
Q ss_pred HHHHHHHHHHhhhcc--cccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVI--PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
.+++.+.+....... ...-+.+.+....++.++|.++..|...+++.+..|++. |++.+|.+.....+|..+
T Consensus 360 ~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~~l~~a~g~~~ 433 (500)
T PRK09584 360 CSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSWFLTTAGAALI 433 (500)
T ss_pred HHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHHHHHHHHHHHH
Confidence 888888876652100 001134577888899999999999999999999999999 999999888777777777
Q ss_pred HHHHHHHhhc----------cccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 190 AVLVAIYLQD----------NVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 190 gp~l~g~l~~----------~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
+..+...... ..++...|...++..++..++++...+
T Consensus 434 ~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 434 AGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666543211 123566676666554433333344333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-05 Score=84.36 Aligned_cols=145 Identities=11% Similarity=0.000 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChh----hhhHHHHHHHHHHHHhhhHHHHHhhhccCchH-------HHHHHHHHHHH
Q 008565 46 AQRFAYYGLAGNLIQYLTNVLNEPTA----TAAQDVNNWVGISSIFPLLGAFVADSYLGRFN-------TILLSSFIYFM 114 (561)
Q Consensus 46 ~~~~~~~~~~~~l~~yl~~~lg~s~~----~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~-------~~~~~~~~~~~ 114 (561)
+....+......++.|.++..+.+.. ...++.+...+...+..|+.|++.||+ |||+ -+.+|+++..+
T Consensus 280 ~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~ 358 (489)
T PRK10207 280 VFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSL 358 (489)
T ss_pred HHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHH
Confidence 34444555557788888754333211 234455555566667888899999997 9886 36677777766
Q ss_pred HHHHHHHhh--hc-ccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAV--SV-IPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 115 ~~~~~~~~~--~~-~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
+.+.+.... .. .....+.+.+....++.|+|.++..|...+++.+..|++. ++.++++++...++|..+|.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~~l~~~ig~~lg~ 432 (489)
T PRK10207 359 GFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMWFLTQAAAFLLGG 432 (489)
T ss_pred HHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 654432110 00 0112346667778889999999999999999999999998 99999999999999999998
Q ss_pred HHHHHh
Q 008565 192 LVAIYL 197 (561)
Q Consensus 192 ~l~g~l 197 (561)
.++...
T Consensus 433 ~l~~~~ 438 (489)
T PRK10207 433 YVATFT 438 (489)
T ss_pred HHHHHh
Confidence 887655
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.6e-06 Score=89.88 Aligned_cols=141 Identities=11% Similarity=-0.075 Sum_probs=111.0
Q ss_pred HHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhh--hcc-cccchhHHHHHHH
Q 008565 63 TNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAV--SVI-PLHYRKAVFFTAL 139 (561)
Q Consensus 63 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~ 139 (561)
++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.+...... +.. ..-.+...+....
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 457899999999999999999999999999999997 999999999888887765543210 000 0001223444556
Q ss_pred HHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc-----chHHHHHH
Q 008565 140 YILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVG-----WAVGFGVM 210 (561)
Q Consensus 140 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g-----~~~~f~~~ 210 (561)
++.+++.+....+...++.+..|++. +++.+++.+...++|..+++.+++++.+..| ++..+...
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i 428 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI 428 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence 67888888888888999999999999 9999999999999999999999999998877 55444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=62.67 Aligned_cols=70 Identities=24% Similarity=0.151 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 40 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
+-...++...+...+.++++.|+. +.|+++.+.|.+.++..+...+++++.|+++||+ +|++.++....+
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 334455566667778899999997 4899999999999999999999999999999998 888877665443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.9e-05 Score=81.67 Aligned_cols=188 Identities=11% Similarity=0.049 Sum_probs=108.9
Q ss_pred CchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFA-YYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~-~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
.+|.....+....++++. +..+..|.+..+ +..|.+... .+...+..+...++..++.++.||+ |||+.++.+.+.
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 344444444444444444 445555555554 456666443 5556666777788888889999997 999999999999
Q ss_pred HHHHHHHHHHhhhcccc------cchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPL------HYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF 185 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 185 (561)
..++.+++......... ......+....+..........|....+.+|.+|.+. |+++.++......+
T Consensus 369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~~s~~~~~n~~ 442 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKGASLAVAVNWL 442 (513)
T ss_pred HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------HhhhHHHHHHHHHH
Confidence 99988877665221000 0111222222222222233345777789999999999 98888885555544
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-HHHHhccccc
Q 008565 186 GASAAVLVAIYLQDNVGWAVGFGVMAGALALALA-IFLIGIKRYR 229 (561)
Q Consensus 186 G~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~-~~~~~~~~~~ 229 (561)
...+-......+.+..++...|...+....+... ..+...|+.+
T Consensus 443 ~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 443 WNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 4443333333333333334455555554444444 4444445433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.6e-06 Score=84.15 Aligned_cols=179 Identities=16% Similarity=0.100 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhH--------HHHHHHHHH-HHhhhHHHHHhhhccCchHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQ--------DVNNWVGIS-SIFPLLGAFVADSYLGRFNTI 105 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~--------~~~~~~~~~-~~~~~~~G~lsDr~~Grk~~~ 105 (561)
+.++-.+...|.-.+++|+...+...-++ ..|+.+..... ...+...++ ..+.++..++.|++ |||+..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 44555667777888888887766655554 45655443322 122222222 23666778889997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccc-ccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHH
Q 008565 106 LLSSFIYFMGMVLLSLAVSVIP-LHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIV 184 (561)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (561)
+-+++++.+..+.+...- . .......+...-+.+-+++.+.....-.+-+|.||.+. |+++.|+..+.+-
T Consensus 382 ~~GF~~~~i~~~~~~~~y---~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv------R~t~hGIsAA~GK 452 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPY---NQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV------RSTCHGISAASGK 452 (538)
T ss_pred HhhHHHHHHHHHHHcCCc---ccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH------hhhhhhHHHHhcc
Confidence 999888877766665551 1 00112222222233445555555566667899999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhc-----cccchHHHHHHHHHHHHHHHHHHHh
Q 008565 185 FGASAAVLVAIYLQD-----NVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 185 lG~~igp~l~g~l~~-----~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
+|+++|.....++.+ ..|.+.+|++.+....++++..+++
T Consensus 453 ~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 453 AGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred chHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 999999999999998 7889999999998888887766554
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0043 Score=62.06 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=87.9
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhh-----hccCch
Q 008565 28 ISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVAD-----SYLGRF 102 (561)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD-----r~~Grk 102 (561)
+..+...+++..+++..+.+.+-+ +....+|..++ .-|.|-++.+.....+.= ..-.+++..+.| |+ |||
T Consensus 24 ~~~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~-Grr 98 (510)
T KOG3574|consen 24 QTLKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRF-GRR 98 (510)
T ss_pred hhhhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhh-ccc
Confidence 345566678888888888887665 45557777776 457776666544433322 233677888888 87 999
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhh--cc----cccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhh
Q 008565 103 NTILL-SSFIYFMGMVLLSLAVS--VI----PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSF 175 (561)
Q Consensus 103 ~~~~~-~~~~~~~~~~~~~~~~~--~~----~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (561)
|.-++ +.. .+|.++..++-. .+ .+.++...+....++..+..+....+.-...-.+..+++ .+.+
T Consensus 99 ksWvvp~q~--llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~------lgya 170 (510)
T KOG3574|consen 99 KSWVVPCQY--LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN------LGYA 170 (510)
T ss_pred cceeeehHH--HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh------cCch
Confidence 86433 222 223333222211 11 112233333334455666666555666666667777777 6666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008565 176 FNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 176 ~~~~~~~~~lG~~igp~l 193 (561)
......+.+.|.+++-.+
T Consensus 171 ST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 171 STCQSVGQTAGYFLGNVV 188 (510)
T ss_pred hHHHHHHHhhhHHhhcce
Confidence 666666666666665443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=76.31 Aligned_cols=120 Identities=14% Similarity=0.046 Sum_probs=81.3
Q ss_pred cCCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHH
Q 008565 391 GHRSGI-TMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELF 469 (561)
Q Consensus 391 ~~~~~~-~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~ 469 (561)
...+|. ++++.+.+|.++..++.+.+...+ ...........+..+|.+...|...+++
T Consensus 67 ~LaDRilGrrr~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv 125 (493)
T PRK15462 67 FLADKVLGNRMAVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLL 125 (493)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHH
Confidence 334555 666778888888888876554321 1112233344455567777778788899
Q ss_pred hhhcchh--HHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008565 470 YDQMPEA--MRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIA 543 (561)
Q Consensus 470 ~~~~p~~--~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 543 (561)
.|..|++ .|+++.++++...++|+.++|.+.+.+.+.. +| +..|...+..++++++.++...
T Consensus 126 ~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--Gw----------~~~F~iaaigm~l~li~~~~~~ 189 (493)
T PRK15462 126 GELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY--SW----------AMGFGLAAVGMIAGLVIFLCGN 189 (493)
T ss_pred HHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh--Ch----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999875 7999999999999999999999999986622 23 4566665555555555544433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=67.30 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhc---cCchHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSY---LGRFNTILLSSFI 111 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~---~Grk~~~~~~~~~ 111 (561)
++++.+..+.+...+.+..=.+++++|++ .+|.+.+..+.+..+.-+...+.+|+.|..+||. +||||.++....+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56667777777888888888899999997 5899999999999999999999999999999984 4888877665444
Q ss_pred -HHHHHHHHHHhhhc---c-c--cc----chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchh-hHHHH
Q 008565 112 -YFMGMVLLSLAVSV---I-P--LH----YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSS-FFNWW 179 (561)
Q Consensus 112 -~~~~~~~~~~~~~~---~-~--~~----~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~ 179 (561)
.+++.+++.++.-. + + .. .....++++..+.=++.-..+.++-++.+|+...++ +.+ +.+.+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~------~~~~Ans~f 184 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA------KKTRANSVF 184 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh------hhhccchhH
Confidence 45566666665321 1 0 01 123344455555556666777888999999987766 333 88888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008565 180 YLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 180 ~~~~~lG~~igp~l~g~l 197 (561)
.....+|..+|..+++++
T Consensus 185 ~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 185 SFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHhcceeeeeccccc
Confidence 888899999998777643
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=58.57 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=90.0
Q ss_pred ChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccc
Q 008565 69 PTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGG 148 (561)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~ 148 (561)
++.....-.++......+..+++..+.+++ |.|+.++++.+.+.+-....... +.+.++.+-.+.|++.+.
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~~--------~~~~l~~~s~l~G~~~a~ 105 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFYP--------NSYTLYPASALLGFGAAL 105 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHhhhhHH
Confidence 333444556666666778888888899996 99999999988887665555444 677888888999999999
Q ss_pred cchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008565 149 HKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l 197 (561)
.+.+...++.+..++++ |++..+++....+.+.++|..+.-.+
T Consensus 106 lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 106 LWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877 88888888888888887777655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00031 Score=77.82 Aligned_cols=135 Identities=12% Similarity=-0.042 Sum_probs=94.6
Q ss_pred cccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHH----------hh-hcCCCCCC-
Q 008565 371 PASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKR--VRT----------AR-ENGLIDSP- 436 (561)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~--~~~----------~~-~~~~~~~~- 436 (561)
.+.+.....++.++..+++....+|.++++.+.+|.++++++.++.++..-.. +.. .. +..++...
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~ 149 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENL 149 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCC
Confidence 34555566667666777766666667777888899999999888876653100 000 00 00011000
Q ss_pred -----------CCcc----cchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHh
Q 008565 437 -----------KAIV----PISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIE 501 (561)
Q Consensus 437 -----------~~~~----~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~ 501 (561)
+... ...+..+++.-++.|+|.+...+...+++.|..|++.|+.+.|+++....+|..+|+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg 229 (633)
T TIGR00805 150 TQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGS 229 (633)
T ss_pred CCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0000 1134456678899999999999999999999999999999999999999999999999999
Q ss_pred hhcc
Q 008565 502 VVEA 505 (561)
Q Consensus 502 ~i~~ 505 (561)
.+.+
T Consensus 230 ~l~~ 233 (633)
T TIGR00805 230 FCLQ 233 (633)
T ss_pred HHHh
Confidence 8875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00068 Score=67.77 Aligned_cols=150 Identities=11% Similarity=0.104 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccC-chHHHHHHHHHHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYL-TNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLG-RFNTILLSSFIYFMG 115 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~G-rk~~~~~~~~~~~~~ 115 (561)
+..+....+...-.|....+...++ .+.+|+++.+.|-+.+...+...+.+..-++..||..| -+-.+..++.++.-.
T Consensus 263 ~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~ 342 (451)
T KOG2615|consen 263 LRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPA 342 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHH
Confidence 3333333333333333333333333 46799999999999999999999999999999999733 344555555555555
Q ss_pred HHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.++.... .....+..+..+-.+..+...+....++....|.++ ||...|+......++-++||.++|
T Consensus 343 ~llls~~-------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~Sl~alaRaiGPlv~g 409 (451)
T KOG2615|consen 343 FLLLSLA-------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRSLGALARAIGPLVSG 409 (451)
T ss_pred HHHHhcc-------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHHHHHHHHHhhhhhhh
Confidence 5555555 456778888888899888888888999999999998 999999999999999999999998
Q ss_pred Hhhcc
Q 008565 196 YLQDN 200 (561)
Q Consensus 196 ~l~~~ 200 (561)
.+..+
T Consensus 410 ~i~~W 414 (451)
T KOG2615|consen 410 VIFSW 414 (451)
T ss_pred eeEEE
Confidence 87653
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=71.68 Aligned_cols=155 Identities=8% Similarity=-0.032 Sum_probs=112.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh---hhhHHHHHHHHHHHHhhhHHHHHhhhccCchH-HHH
Q 008565 31 KGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTA---TAAQDVNNWVGISSIFPLLGAFVADSYLGRFN-TIL 106 (561)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~-~~~ 106 (561)
.+++|.+...+++.++..+.+|.+..+.|......++-++. +.++....+.++..++..+.|.+.-++ +|-| .++
T Consensus 306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li 384 (599)
T PF06609_consen 306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI 384 (599)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence 34456676677888888888999999999888877776653 567888888888889999999999886 7755 445
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHH
Q 008565 107 LSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFG 186 (561)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 186 (561)
++..+..+++.++.... .++....+...++.|++.|...........-..|++. -+.+.++....-.+|
T Consensus 385 ~~~~~~ta~~Gama~~~-----~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~a~gL~~s~R~~G 453 (599)
T PF06609_consen 385 FGSVLMTAFCGAMAAVR-----PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGTATGLTGSIRSIG 453 (599)
T ss_pred HHHHHHHHHHHHHHHcc-----CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHHHHHHHHHHHHHh
Confidence 66555554444444332 2445555677778888888776666666666678777 888998888888888
Q ss_pred HHHHHHHHHHh
Q 008565 187 ASAAVLVAIYL 197 (561)
Q Consensus 187 ~~igp~l~g~l 197 (561)
+.+|..+..-+
T Consensus 454 GsIg~aIy~~I 464 (599)
T PF06609_consen 454 GSIGYAIYNAI 464 (599)
T ss_pred hHHHHHHHHHH
Confidence 88887766544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=72.16 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh-hh-hhHHHHHHHHHHHHhhhHHHHHhhhccCchH--------
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVL-NEPT-AT-AAQDVNNWVGISSIFPLLGAFVADSYLGRFN-------- 103 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l-g~s~-~~-~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~-------- 103 (561)
..+|.++...+|..-+-..++..+. ++.+.+ |.+. ++ ...++++.++++++|.+.+|+++... -||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhccccccchh
Confidence 3577777777776444444444443 334566 6623 32 22389999999999999999998322 2222
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHH
Q 008565 104 -TILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLG 182 (561)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (561)
.+.+..+ ..++.+++.+. .....+++.-++.|++.|...+...+.++|+|. ++ -++-+.....+
T Consensus 431 ~~l~~~~~-~~~~~lll~~~-------~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~------~g~~yN~~~~a 495 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLT-------LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KD------PAKHYNFCFLG 495 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHH-------CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc------hHHHhhHHhHH
Confidence 2222333 44555555555 122678899999999999999999999999999 77 77778777777
Q ss_pred HHHHHHHH-HHHHHHhhcc----------cc---chHHHHHHHHHHHHHHHHHHHhc
Q 008565 183 IVFGASAA-VLVAIYLQDN----------VG---WAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 183 ~~lG~~ig-p~l~g~l~~~----------~g---~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
..+|+.+- -.+.|.+.|. .| ++..|++.++..+++.+.....+
T Consensus 496 ~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 496 SVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 77777754 3466666543 12 67888888888777777655554
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00097 Score=68.21 Aligned_cols=183 Identities=14% Similarity=0.017 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCc-hHHHHHHHHHHHH
Q 008565 36 AAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGR-FNTILLSSFIYFM 114 (561)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr-k~~~~~~~~~~~~ 114 (561)
.+.++++........+|+....+-.-+. .-|.+...+|+......++.+++..+.|.+.||. .+ |+++........+
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALV 344 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHH
Confidence 3445555555555566666555543332 3577778899999999999999999999999997 44 4455555555555
Q ss_pred HH-HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GM-VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~-~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+. .+..+. ........++....+.|++.-...|...-+..|..-+..+ +...|+.++..++-+++=..+
T Consensus 345 ~~~~l~~~t----~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~tSsGll~~~gq~f~~~~~~~ 414 (480)
T KOG2563|consen 345 GTLMLLTCT----LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------GTSSGLLNLSGQIFGVILVFI 414 (480)
T ss_pred HHHHHHHhh----ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------cccceeEEeehhHHHHHHHHH
Confidence 53 222222 1123344455566677777777788888888888644442 234455555555545555556
Q ss_pred HHHhhcccc----chHHHHHHHHHHHHHHHHHHHhcccccc
Q 008565 194 AIYLQDNVG----WAVGFGVMAGALALALAIFLIGIKRYRK 230 (561)
Q Consensus 194 ~g~l~~~~g----~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 230 (561)
-+...+..+ +...-+.......+...+..+++++++.
T Consensus 415 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 415 MGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred HHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 666665554 3323333334444444455555554443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0028 Score=66.27 Aligned_cols=90 Identities=11% Similarity=0.153 Sum_probs=77.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhh
Q 008565 392 HRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYD 471 (561)
Q Consensus 392 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~ 471 (561)
..+|.+.++.+..+.+...+..+.+++.. +.+.+.+.-++.|++++... +.+.++++
T Consensus 85 LaDrlG~K~vL~l~~l~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~ 141 (511)
T TIGR00806 85 LTDYLRYKPVLVLQALSFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFS 141 (511)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34446667788888888888877777753 56678888899999999999 99999999
Q ss_pred hcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhc
Q 008565 472 QMPEAMRSIGAAAYISIIGVGSFINTGVIEVVE 504 (561)
Q Consensus 472 ~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~ 504 (561)
.+|++.|++++|+.+....+|.++++.+.+.+.
T Consensus 142 WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 142 LVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.011 Score=64.23 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGM 116 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~ 116 (561)
.+.+.+..+.....+|+... ....+|.+......+... .........+.+.|++ |||.....+..+..++.
T Consensus 324 ~~~~~~~~~~~~~~y~gl~~-----~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~ 394 (521)
T KOG0255|consen 324 TLYLLFIWFVFSLVYYGLSL-----NVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGL 394 (521)
T ss_pred HHHHHHHHHHHhHHHHhhhh-----hhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 33344444444455554432 233455443333322222 4445555668899997 99999999999988888
Q ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008565 117 VLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY 196 (561)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~ 196 (561)
+....... ........+...+...+.+........+.+|++|+.. |..+.+.......+|.+++|.+...
T Consensus 395 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~ 464 (521)
T KOG0255|consen 395 LLFGWLPD----DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLL 464 (521)
T ss_pred HHHHHhhc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777621 1110122233333333334444555889999999999 9999999999999999999988765
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhcccc
Q 008565 197 LQDNVGWAVGFGVMAGALALALAIFLIGIKRY 228 (561)
Q Consensus 197 l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~ 228 (561)
... ......+.+.+....+..+......|+.
T Consensus 465 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet 495 (521)
T KOG0255|consen 465 LRQ-MFPLLGLILFGWLALLLGLLSLLLLPET 495 (521)
T ss_pred Hhh-hcccchHHHHHHHHHHHHHHHHhcCccc
Confidence 544 2233333332333334443343444443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0018 Score=68.33 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=120.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHH-HHhhhccCchHHHHHH
Q 008565 31 KGGWNAAIFIIMVEMAQRFAYYGLAG-NLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGA-FVADSYLGRFNTILLS 108 (561)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G-~lsDr~~Grk~~~~~~ 108 (561)
.++.|..+.+....++....-.+-.. .++.|+...++++..+.+.+.+.......++..+.. .+.-.+ |-|+.+.+|
T Consensus 236 ~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lG 314 (463)
T KOG2816|consen 236 VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLG 314 (463)
T ss_pred cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHH
Confidence 34445555555444443333221111 345777888999999999999999999999998887 667765 999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHH
Q 008565 109 SFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGAS 188 (561)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 188 (561)
+..-.+......++ ++.++.+....+.++. +...|...++++.+.++++ +++.+++....-.+..+
T Consensus 315 l~~~~~~~~~~af~-------~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~ 380 (463)
T KOG2816|consen 315 LLSEFLQLLLFAFA-------TETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGV 380 (463)
T ss_pred HHHHHHHHHHHHHh-------ccchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhh
Confidence 99999999999999 6888888887776666 4567888999999999999 99999999999999999
Q ss_pred HHHHHHHHhh
Q 008565 189 AAVLVAIYLQ 198 (561)
Q Consensus 189 igp~l~g~l~ 198 (561)
++|.+-+.+.
T Consensus 381 ~~~~~~~~i~ 390 (463)
T KOG2816|consen 381 VSPALYGNIF 390 (463)
T ss_pred hhHHHHHHHH
Confidence 9998888664
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0051 Score=48.26 Aligned_cols=72 Identities=7% Similarity=-0.093 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 008565 49 FAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLA 122 (561)
Q Consensus 49 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~ 122 (561)
++.+...+.+|.. +++.++|.++.+++.+...+++.++.+...++.++. .+++.+..+++...+..+.+.+.
T Consensus 6 igRFayTplLP~M-~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 6 IGRFAYTPLLPLM-QADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hHHHHHHhHhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777664 567899999999999999999999999999999985 88889999999888888888887
|
Note that many members are hypothetical proteins. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0094 Score=62.57 Aligned_cols=155 Identities=11% Similarity=0.083 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHHhhcCC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccc-hhhhHHhHHHH
Q 008565 376 SLVGLSILVAVPVITGHR-SGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPI-SIWWLLPQYLL 453 (561)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 453 (561)
....++..+..|.++... ++.+.++=+..|.+++.++.+++...+. .+. ..+++....++
T Consensus 78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~------------------~~~~~~y~mL~~R~l 139 (488)
T KOG2325|consen 78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAY------------------VPNGVKYLMLVARIL 139 (488)
T ss_pred HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHH
Confidence 334566666677755442 2222244477888888888888755541 122 66788889999
Q ss_pred HHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCC-CccchhHHHHHHHHHHH
Q 008565 454 VSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDN-LNRAHLDYFYWVLAGLS 532 (561)
Q Consensus 454 ~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 532 (561)
.|+|.+-. ...-.|+++..-.+.|.++++..+....+|..+||.+...+...-+.++.-.. .+-+.+...-|+++.+.
T Consensus 140 ~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~ 218 (488)
T KOG2325|consen 140 TGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILW 218 (488)
T ss_pred cCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHH
Confidence 99997553 44556777655566677777777777777777777766655544333332111 22233455678889999
Q ss_pred HHHHHHHHHHHhhcccc
Q 008565 533 ALNLCVFIWIAKRFVYK 549 (561)
Q Consensus 533 ~~~~~~~~~~~~~~~~~ 549 (561)
++.+++.+++.+|..+.
T Consensus 219 i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 219 IIYIVIILFFFKEVYRG 235 (488)
T ss_pred HHHHHHHHhheeecccC
Confidence 99999888888775443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.34 Score=51.71 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=90.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChhhhhHHHHHHHH-HHHHhhhHHHHHhhhccCchHHHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVL---NEPTATAAQDVNNWVG-ISSIFPLLGAFVADSYLGRFNTILL 107 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grk~~~~~ 107 (561)
.++++++.+.+..|+..+.|-.+- -++|.+ ..++.....+-....+ +..+...+..+++|++ +|.+++.+
T Consensus 21 ~E~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~ 94 (491)
T PF03219_consen 21 SELKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI 94 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 445566666666666655553221 122222 1233444555554444 4556788889999997 99998887
Q ss_pred HHHHHHHHHHHHHHhhhc---ccccc------------hhHHH---------HHHHHHHHHhccccch-hhhhHhhhhcc
Q 008565 108 SSFIYFMGMVLLSLAVSV---IPLHY------------RKAVF---------FTALYILAVGEGGHKP-CVQTFAADQFD 162 (561)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~---~~~~~------------~~~~l---------~~~~~l~g~g~g~~~~-~~~~~~~~~~~ 162 (561)
....+.....++++...| ..+++ +...+ .+.-+..-+-.....+ .-..++.|.++
T Consensus 95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt 174 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT 174 (491)
T ss_pred HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 776666655555554322 01111 01100 0000000111111122 34788899999
Q ss_pred cCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 163 ERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199 (561)
Q Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~ 199 (561)
.++ -.+.++++..+.|+|.+++..+..++.+
T Consensus 175 ~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 175 VEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 7789999999999999999888888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.11 Score=56.19 Aligned_cols=161 Identities=11% Similarity=-0.007 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHH-HHHHHHHHHHHHHHHHHhhhcccccchhHH
Q 008565 56 GNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNT-ILLSSFIYFMGMVLLSLAVSVIPLHYRKAV 134 (561)
Q Consensus 56 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (561)
....-.+.-.+|-+....+.+++++..+..+|..++|++.++. -|+-. ..+++.+....+........... ......
T Consensus 35 v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~~~~-~~~~~~ 112 (521)
T PRK03612 35 LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAFAFQ-GLSRLL 112 (521)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3333445556788888889999999999999999999887553 22221 11111111111111111100000 001111
Q ss_pred HHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc-cccch-HHHHHHHH
Q 008565 135 FFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD-NVGWA-VGFGVMAG 212 (561)
Q Consensus 135 l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~-~~g~~-~~f~~~~~ 212 (561)
++...++.++..|+..|....+..+... ++ -++..|..+....+|+++|.++.+++.- ..|-. ..+.+..+
T Consensus 113 ~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 113 LYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 2233344556666655555554443221 12 3445677888889999999988887643 56754 44444444
Q ss_pred HHHHHHHHHHHhc
Q 008565 213 ALALALAIFLIGI 225 (561)
Q Consensus 213 ~~~i~~~~~~~~~ 225 (561)
..+++++.++..+
T Consensus 186 ~~~~a~~~~~~~~ 198 (521)
T PRK03612 186 NLLAALVFLWLFR 198 (521)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.029 Score=61.58 Aligned_cols=157 Identities=11% Similarity=0.077 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHH-HHHhhhHHHHHhhhc-cCchHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGI-SSIFPLLGAFVADSY-LGRFNTILLSSFIYFM 114 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~-~~~~~~~~G~lsDr~-~Grk~~~~~~~~~~~~ 114 (561)
.+..++...++...+.+..+++|.|++.++|.+...+..+++...+. ..+|..++|++..|+ +.-|.+..+.++...+
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 34455677788888899999999999999999999999999777666 458999999999997 2445665555555544
Q ss_pred HHHHHHHhhh-------------------------------------------c---------------------c----
Q 008565 115 GMVLLSLAVS-------------------------------------------V---------------------I---- 126 (561)
Q Consensus 115 ~~~~~~~~~~-------------------------------------------~---------------------~---- 126 (561)
..+......+ | .
T Consensus 474 ~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~ 553 (735)
T KOG3626|consen 474 SLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDG 553 (735)
T ss_pred HHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCC
Confidence 4443211100 0 0
Q ss_pred ----------c----c-------------cchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHH
Q 008565 127 ----------P----L-------------HYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWW 179 (561)
Q Consensus 127 ----------~----~-------------~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (561)
. . ......+++..++..+..+...+....++-+.+++++ |.-++|+.
T Consensus 554 ~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~~ 627 (735)
T KOG3626|consen 554 NTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGFQ 627 (735)
T ss_pred ceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHHH
Confidence 0 0 0011223333334444445555666777888899998 99999995
Q ss_pred HH-HHHHHHHHHHHHHHHhhc
Q 008565 180 YL-GIVFGASAAVLVAIYLQD 199 (561)
Q Consensus 180 ~~-~~~lG~~igp~l~g~l~~ 199 (561)
.+ .-.+|.+=+|++-|++.|
T Consensus 628 ~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 628 WMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred HHHHHHHhcCCchHhhhhhHh
Confidence 55 457788889999999876
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00059 Score=73.73 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHH-HHHHhhhHHHHHhhhc-cCchHHHHHHHHHHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVG-ISSIFPLLGAFVADSY-LGRFNTILLSSFIYFMG 115 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~-~Grk~~~~~~~~~~~~~ 115 (561)
+...+...++.+..-++.+++|.|++.+++.++.+++.+.+...+ +.+++.+++|++..|+ ++.|+++.+..+...++
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 334556667777888999999999999999999999999988776 4669999999999997 23555555555554444
Q ss_pred HHHHHHhhh------c-------c---------------------------------cc-cchhHHHHHHHHHHHHhccc
Q 008565 116 MVLLSLAVS------V-------I---------------------------------PL-HYRKAVFFTALYILAVGEGG 148 (561)
Q Consensus 116 ~~~~~~~~~------~-------~---------------------------------~~-~~~~~~l~~~~~l~g~g~g~ 148 (561)
.++.....+ + - .. .+....+++..++..+..+.
T Consensus 388 ~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~ 467 (539)
T PF03137_consen 388 VILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFM 467 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHh
Confidence 433111100 0 0 00 01123333444444444454
Q ss_pred cchhhhhHhhhhcccCCCCccccchhhHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 008565 149 HKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLG-IVFGASAAVLVAIYLQDN 200 (561)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~lG~~igp~l~g~l~~~ 200 (561)
.........-+.+|+++ |+.+.|+..+. --+|.+=||++.|.+.|.
T Consensus 468 ~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 468 SQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------------
T ss_pred cccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 45555566678899888 99999996554 467888899999988875
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.11 Score=54.34 Aligned_cols=134 Identities=7% Similarity=0.013 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccc---cc
Q 008565 53 GLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIP---LH 129 (561)
Q Consensus 53 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 129 (561)
+.-..+..|+..+ |+++...|.+-+...+....+.....++.+|+ |..|+-++++........++..+.+... ..
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~ 353 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSS 353 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 3445677898876 99999999999999999999999999999997 9999888887776655555544322111 12
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+...++.+..+.=+|.=.+.-+...++-|..|+++ |+...|..+...++--.+...++
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 234445555555556544556777889999999998 99999998888888877776543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=54.34 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=69.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcc
Q 008565 395 GITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMP 474 (561)
Q Consensus 395 ~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p 474 (561)
+..++..+.+|.+...+++..+...-. + ...+.+.|.++...++.+.+..+...+......+-+|
T Consensus 62 ~~gp~~~l~iG~~~~~~GY~~~~l~~~---------~------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP 126 (250)
T PF06813_consen 62 RFGPWVVLLIGAVLGFVGYGLLWLAVS---------G------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP 126 (250)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHh---------C------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc
Confidence 345666778899998888877655421 1 0122466777777777778877777777777778898
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 475 EAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 475 ~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
. .||++.|+.-...++++.+-+.+...+.+
T Consensus 127 ~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 127 R-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred c-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 5 69999999999999999887777766655
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.031 Score=61.92 Aligned_cols=93 Identities=24% Similarity=0.429 Sum_probs=72.7
Q ss_pred CcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCc
Q 008565 438 AIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLN 517 (561)
Q Consensus 438 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~ 517 (561)
-+++++.+|.++++.+.++|+.+.+....++.++.+|+++++..++++.+...+|+.+...+...-..
T Consensus 559 ~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~------------ 626 (654)
T TIGR00926 559 SVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENF------------ 626 (654)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------
Confidence 35668999999999999999999999999999999999999999999999999999998888765432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 008565 518 RAHLDYFYWVLAGLSALNLCVFIWIA 543 (561)
Q Consensus 518 ~~~~~~~~~~~~~i~~~~~~~~~~~~ 543 (561)
.....-|..+++++++-.+++.++.
T Consensus 627 -~~~~~~~~~~~~~~~~~~~~f~~~a 651 (654)
T TIGR00926 627 -SVQAAEFFLFASLMLVVMAIFSILA 651 (654)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111235555556555555544443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.03 E-value=2.5 Score=44.48 Aligned_cols=155 Identities=11% Similarity=0.016 Sum_probs=99.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChhhhhHHHHHHHH-HHHHhhhHHHHHhhhccCchHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNE---PTATAAQDVNNWVG-ISSIFPLLGAFVADSYLGRFNTILLS 108 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~-~~~~~~~~~G~lsDr~~Grk~~~~~~ 108 (561)
++++++.+.+..+|..+.+..+-+ +.|.+.. ++....++-....+ ++.+..++.+++.+++ .|.+++..-
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 455666666666676666543332 4454443 44556677777766 6778899999999997 999999888
Q ss_pred HHHHHHHHHHHHHhhhcc---cccc----------hh------------HHHHHHHHHHHHhccccch-hhhhHhhhhcc
Q 008565 109 SFIYFMGMVLLSLAVSVI---PLHY----------RK------------AVFFTALYILAVGEGGHKP-CVQTFAADQFD 162 (561)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~---~~~~----------~~------------~~l~~~~~l~g~g~g~~~~-~~~~~~~~~~~ 162 (561)
+..+....+++++...|- .+++ .+ |...+.-++.-+=.....+ .-...+.|.+.
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt 178 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT 178 (509)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888887777777775541 1111 00 1111111111111111112 34567889998
Q ss_pred cCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008565 163 ERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD 199 (561)
Q Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~ 199 (561)
.++ -.|.+++++...|++..++..+..++..
T Consensus 179 ~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 179 IEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888 7789999999999999988888887765
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.23 Score=52.10 Aligned_cols=163 Identities=16% Similarity=0.046 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCC----hhhhhHHHHHHHHHHHHhhhHHHHHhhhccCch-------HHHHHHHHHHHHHHHHHHHhh-
Q 008565 56 GNLIQYLTNVLNEP----TATAAQDVNNWVGISSIFPLLGAFVADSYLGRF-------NTILLSSFIYFMGMVLLSLAV- 123 (561)
Q Consensus 56 ~~l~~yl~~~lg~s----~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk-------~~~~~~~~~~~~~~~~~~~~~- 123 (561)
+.+..|..+..+-+ .-...+.-+.-.+.-.+..|+..++--|. +++ .-+-++++++..+.+++....
T Consensus 305 ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~ 383 (498)
T COG3104 305 SSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGI 383 (498)
T ss_pred chHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655432211 12345666666666677777777777663 433 235556666666665554441
Q ss_pred hc-c-cccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH-----
Q 008565 124 SV-I-PLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIY----- 196 (561)
Q Consensus 124 ~~-~-~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~----- 196 (561)
.. . ....+.+.++...+++++|.=+..|...++++...|++- .+..++.+......|..++..+.+.
T Consensus 384 ~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~ 457 (498)
T COG3104 384 WFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTD 457 (498)
T ss_pred hhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccc
Confidence 11 1 233467788889999999999999999999999999987 7888888888877777777666552
Q ss_pred -hhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 197 -LQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 197 -l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
..+.......|+..+...++....+....
T Consensus 458 ~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 458 PAYTAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 22233455566666655544444444433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.059 Score=55.68 Aligned_cols=124 Identities=17% Similarity=0.063 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchh---
Q 008565 400 QRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEA--- 476 (561)
Q Consensus 400 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~--- 476 (561)
+.+.+|.++..+|+.++.+.... +. .....+...+..++++.++|.+..=|....+..|+.+++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-----------~~--~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-----------PS--LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-----------SS--C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-----------ch--hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 45778888999998886664310 00 011234456788888899999999999999999999765
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008565 477 MRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVY 548 (561)
Q Consensus 477 ~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 548 (561)
.|...-..+....++|+.++..+.+++.++. ++...|++.++.++++.+.++...+.++.
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~ 128 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY------------GWFLGFGIPAIGMLLALIVFLSGRKRYRK 128 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-------------HHHHHHHHHHHHHHHHHHHHCCCCTT--
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhcccc------------chhhhhhHHHHHHHHHHHHHHhCCcCCcC
Confidence 5666777788899999999999999987622 23456777676777777665555444333
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.2 Score=49.95 Aligned_cols=153 Identities=9% Similarity=0.058 Sum_probs=85.1
Q ss_pred HHHHHHHH-HhcCCChhhhh-HHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhH
Q 008565 56 GNLIQYLT-NVLNEPTATAA-QDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKA 133 (561)
Q Consensus 56 ~~l~~yl~-~~lg~s~~~~~-~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (561)
+++..|+. .+.+++..+.. -+.=...-...+.-.+.=.+.|-. --|+++++-.+.....-.++.+. ++.+
T Consensus 25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g-------~sV~ 96 (433)
T KOG3810|consen 25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFG-------PSVK 96 (433)
T ss_pred CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhc-------CCch
Confidence 45666665 45566666543 111111122222222333478975 44554444323222333333344 4666
Q ss_pred HHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhc--cccchHHHHHHH
Q 008565 134 VFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQD--NVGWAVGFGVMA 211 (561)
Q Consensus 134 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~--~~g~~~~f~~~~ 211 (561)
.+-+.-++.|...+. ..+.++++=+..+++. +.+..+....+.-.|...|..++-.+.. ..++...-++..
T Consensus 97 ~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~------Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL 169 (433)
T KOG3810|consen 97 AMQVLEFFYGPATAA-EIAYYSYIYSKVDPEM------YKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISL 169 (433)
T ss_pred heeeehhhcChHHHH-HHhhhheeeeecCHHH------HHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhH
Confidence 666666666665443 3455666666667766 8889999999888888888877776654 334554555555
Q ss_pred HHHHHHHHHHHH
Q 008565 212 GALALALAIFLI 223 (561)
Q Consensus 212 ~~~~i~~~~~~~ 223 (561)
....++..+.++
T Consensus 170 ~~~~ia~~~A~f 181 (433)
T KOG3810|consen 170 AEVTIAVLLALF 181 (433)
T ss_pred HHHHHHHHHHhh
Confidence 555555554443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.065 Score=55.29 Aligned_cols=183 Identities=11% Similarity=-0.064 Sum_probs=105.5
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCh----------------hhhhHHHHHHHHHHHHhhhH
Q 008565 28 ISSKGGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNV-LNEPT----------------ATAAQDVNNWVGISSIFPLL 90 (561)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~----------------~~~~~~~~~~~~~~~~~~~~ 90 (561)
......+|..+.+++.++++.++.+....+-+-++.+. ++=++ ....|-+.+..+...+.+..
T Consensus 272 G~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~ 351 (498)
T KOG0637|consen 272 GALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLL 351 (498)
T ss_pred chHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 33567788999999999999999887777766665432 22111 12235566677777788888
Q ss_pred HHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccC------
Q 008565 91 GAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDER------ 164 (561)
Q Consensus 91 ~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~------ 164 (561)
--++.||+ |-|+.++.+...+.++..+..+. .+.......+-..|+-.+.........+++..-.+
T Consensus 352 ~~~l~~~~-g~r~~y~~~~~~f~~~~~~~gl~-------~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t 423 (498)
T KOG0637|consen 352 VEKLSRKF-GTRKRYWGGVNAFGLATGLAGLV-------LNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAIT 423 (498)
T ss_pred HHHHHHhc-CcceEEeehhHHHHHHHHHHhhh-------hhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccc
Confidence 99999997 86665555555455565555544 24444444444444333333333333332221111
Q ss_pred ------C-----CCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHH
Q 008565 165 ------N-----PKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGW--AVGFGVMAGALALAL 218 (561)
Q Consensus 165 ------~-----~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~--~~~f~~~~~~~~i~~ 218 (561)
. .+.+.+++...|+.+....+..++.....|.+.+.+|- ..+|...++..+++.
T Consensus 424 ~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~ 490 (498)
T KOG0637|consen 424 FSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGG 490 (498)
T ss_pred cccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHH
Confidence 0 11122245555668888888888777777777666552 234433333333333
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=4.3 Score=41.87 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=46.5
Q ss_pred hhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHH
Q 008565 443 SIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVI 500 (561)
Q Consensus 443 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~ 500 (561)
+.++.+....+.|+..+-.....+.+..+..|++++..+..+....-..|-+.|..++
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3456667777888888888888888999999999998888888888877777777665
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.45 Score=42.36 Aligned_cols=94 Identities=9% Similarity=0.029 Sum_probs=71.8
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhh
Q 008565 385 AVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVG 464 (561)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 464 (561)
..|.+.++ .+.++.+.+|.++..+-.....+ ...+.+.+.-++.|+|.+...++
T Consensus 56 ~~P~iv~~---lg~K~sm~lg~~~y~~y~~~~~~-----------------------~~~~~l~~~s~l~G~~~a~lW~a 109 (156)
T PF05978_consen 56 FAPSIVNK---LGPKWSMILGSLGYAIYIASFFY-----------------------PNSYTLYPASALLGFGAALLWTA 109 (156)
T ss_pred hHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHh-----------------------hhHHHHHHHHHHHhhhhHHhhHh
Confidence 45655444 55667777777777664444333 23567788889999999999999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhc
Q 008565 465 LQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVE 504 (561)
Q Consensus 465 ~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~ 504 (561)
.-.++.+...++.+++..+++......+..+|..+.-.+.
T Consensus 110 qg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 110 QGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888887765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.38 Score=49.63 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l 197 (561)
++.+.+++..+..|+..|..+......+.|..|+++ |.-+++...++-++|..++..++-++
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 367777778888999999999999999999888887 99999999999999988887666544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.31 Score=51.54 Aligned_cols=118 Identities=19% Similarity=0.168 Sum_probs=78.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhc---
Q 008565 397 TMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQM--- 473 (561)
Q Consensus 397 ~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~--- 473 (561)
++++-+.++.++..++.+.++.... ...+........++..+|..+.....-++..|..
T Consensus 57 rr~~Y~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~ 118 (433)
T PF03092_consen 57 RRKPYMIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARRE 118 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Confidence 3445566677776666665555321 0123334455667788888888888888887776
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 474 PEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 474 p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
|.+ +|..++.....+.+|+.++..+.|...+.. +....|++.+.+.++..+..+++.+|
T Consensus 119 p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 119 PES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 444 888899999999999999999998887632 11234566666666665555555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=94.27 E-value=8.6 Score=40.72 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=50.7
Q ss_pred hhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 445 WWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 445 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
..++..+++..+.....+.+..++-.+++.|..-|++|-+.+...++|+---..++-.+.|
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 3456677888888888899999999999999999999999999999988776655544443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.51 E-value=2.8 Score=44.23 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhc--cCchHHHHHHHHHHHHHHHHHHHhhh---cc--------cccchhHHHHHHHHH
Q 008565 75 QDVNNWVGISSIFPLLGAFVADSY--LGRFNTILLSSFIYFMGMVLLSLAVS---VI--------PLHYRKAVFFTALYI 141 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~G~lsDr~--~Grk~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~l~~~~~l 141 (561)
........+..++....+.+++|. +||++.+.++..+..++.++...... |+ ...++.....+.-++
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 333334555556666677776553 38899999988888777776655422 10 011123344555678
Q ss_pred HHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008565 142 LAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAI 195 (561)
Q Consensus 142 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g 195 (561)
.|++-+......+.++++.+| ++ |..+++++..-..++..++-....
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999995 44 777888776666666655444433
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.8 Score=43.00 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=46.4
Q ss_pred HHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhc
Q 008565 83 ISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQF 161 (561)
Q Consensus 83 ~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~ 161 (561)
.....+++.+.+..++ |-|.++.++...+......-.. +.+..++..-+..|++.+..+.+.-+++++.-
T Consensus 70 ~l~~s~m~~~~~Ir~~-g~K~tm~lav~~Y~lyiA~Nl~--------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 70 SLIDSSMFMPLLIRFL-GTKWTMVLAVFPYALYIAANLE--------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHhhcc--------hhHHhhccHHHhhccccccccccCcceecHHH
Confidence 3344555555777775 9999998765554433222222 35667777888899999988887777766553
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.4 Score=46.43 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 131 RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 131 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
+-+..++..++.|+.+|-..+....+.++..++++ |..+-.+...+..+|-.+|..++
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667889999999888888888888888776 77777777778888887777553
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.45 E-value=11 Score=37.25 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=45.7
Q ss_pred hhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 008565 443 SIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVV 503 (561)
Q Consensus 443 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i 503 (561)
++|.+++..+.-|+--+..+...+--+.+..+++.|-.+++.......+|..+++.+.-.+
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3344444445557766666777777778888899999999999999999998888876444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=89.20 E-value=16 Score=37.99 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=48.6
Q ss_pred hhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 443 SIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 443 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
+.+.+-..-++.|++... -.+.+++++...|++.--++++......-+|.+++..+...+..
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777654 67788999999999888889988888888888888888877765
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=88.07 E-value=29 Score=36.95 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=45.4
Q ss_pred HHhHHHHHHHhhhhhh-hhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 447 LLPQYLLVSICDVFGI-VGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 447 ~~~~~~l~g~g~~~~~-~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
....|+...+-...+. -..+.+..|....++..+-.++.....++|..+++.+...+.+
T Consensus 131 ~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 131 FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333 4788899999999999999999999999999999999887764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.61 E-value=5.5 Score=38.59 Aligned_cols=141 Identities=11% Similarity=0.070 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHhhhccCc--hHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccc
Q 008565 73 AAQDVNNWVGISSIFPLLGAFVADSYLGR--FNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHK 150 (561)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~G~lsDr~~Gr--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~ 150 (561)
-|.+.+.++++..+++-++.++..|- .. ...+.+.+++.++...+.....+..+.-.++..-+++..+.-.+.|.++
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 58999999999999998888887763 22 2345555444444433333322211222334444566666777888999
Q ss_pred hhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 008565 151 PCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAI 220 (561)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~ 220 (561)
|...-+-.+..|++. |++.+..+..-.++-.-++-...-.=....+-|-.|-++.+...++.+.
T Consensus 363 PSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred hHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence 999999999999998 9999888776655533332111000011134556676666555555443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.21 E-value=20 Score=36.35 Aligned_cols=142 Identities=11% Similarity=-0.127 Sum_probs=84.3
Q ss_pred cccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhH
Q 008565 371 PASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQ 450 (561)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (561)
.+.+...+.....+..++.....++.++++.+++-.++..++.+.... ...+.++..
T Consensus 71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-----------------------~~~~~L~~G 127 (354)
T PF05631_consen 71 IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-----------------------SNYPVLLLG 127 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-----------------------cccHHHHHH
Confidence 345556677777888888777777777777777777777776543322 345677788
Q ss_pred HHHHHHhhhhhhhhhHHHH-----hhhcchhHHHHHHHHHH-HHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHH
Q 008565 451 YLLVSICDVFGIVGLQELF-----YDQMPEAMRSIGAAAYI-SIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYF 524 (561)
Q Consensus 451 ~~l~g~g~~~~~~~~~~~~-----~~~~p~~~rg~~~g~~~-~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 524 (561)
-++.|++..+.+...=++. .+..|++..+...+... ..+.+-..+++.+...+.+..+ .+ .-..
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~---------~g-~vaP 197 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG---------FG-PVAP 197 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC---------CC-Ccch
Confidence 8888888888776544443 24456665555554444 2344444445555544444111 11 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008565 525 YWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 525 ~~~~~~i~~~~~~~~~~~~~~ 545 (561)
|.....+.+++.++....++|
T Consensus 198 F~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 198 FDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 666666666666655545544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=84.21 E-value=60 Score=34.30 Aligned_cols=58 Identities=14% Similarity=0.013 Sum_probs=49.3
Q ss_pred hhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHh
Q 008565 444 IWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIE 501 (561)
Q Consensus 444 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~ 501 (561)
-++.+...+++|+..+........+..+..++++|..+..+..+.-.+|-.+|+.++-
T Consensus 372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666788899999999999999999999999999999999999999888888753
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.89 E-value=2.4 Score=43.67 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCC---ChhhhhHHHHH-HHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh-c-cccc
Q 008565 56 GNLIQYLTNVLNE---PTATAAQDVNN-WVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVS-V-IPLH 129 (561)
Q Consensus 56 ~~l~~yl~~~lg~---s~~~~~~~~~~-~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 129 (561)
+..|.+..+..+- +....-.+..+ +.+...+|.+.+.++-++ +||+..+..+.= .+...++.+..- + ....
T Consensus 264 siFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v~lR-~lfiPlF~~cn~~~~~v~~ 340 (406)
T KOG1479|consen 264 SIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPVLLR-LLFIPLFLLCNYPPLPVVF 340 (406)
T ss_pred EecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHHHHH-HHHHHHHHHhccCCCCcee
Confidence 3566666554322 22334455555 778888888888777775 566654443322 222222221110 0 0011
Q ss_pred chhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 130 YRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 130 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.+-+..+....++|+..|-..+....+.++..|+++ +..+-.+.......|-..|.
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e------~e~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE------KEAAGNLMVFFLVGGLALGS 396 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhheehhcCCCCChHH------HHHHHHHHHHHHHHHHHHhh
Confidence 355666777788999999888888888899888776 54444445555555555554
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.13 E-value=18 Score=38.40 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=44.1
Q ss_pred HHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008565 139 LYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGW 203 (561)
Q Consensus 139 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~g~ 203 (561)
-.+..+..-.+..+..++-+++.+|.. =|+.|.+.|...|+|+-.-..+.-++.|.+.+
T Consensus 412 ~~l~sf~stvmFVai~AFharISDP~I------GGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~ 470 (544)
T PF13000_consen 412 HVLSSFMSTVMFVAIMAFHARISDPAI------GGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTV 470 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccc------chHHHHHHHHHHhcCCCchHHHHHHHhhhccc
Confidence 344555555566677788888888888 78899999999999988777777777766543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=80.91 E-value=0.54 Score=47.21 Aligned_cols=112 Identities=12% Similarity=0.005 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhh-cc-----cccchhHHHHHHHHHHHHhcccc
Q 008565 76 DVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVS-VI-----PLHYRKAVFFTALYILAVGEGGH 149 (561)
Q Consensus 76 ~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~l~~~~~l~g~g~g~~ 149 (561)
...++.++-.+|..+.++.-=+...+|.+.. ..++-.+...++.+.+- +. ..-++-+..++..++.|+.+|-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 4556777777888877764211002333333 22222222222222210 00 00124455566778899999998
Q ss_pred chhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 150 KPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+....+.++..++++ |..+-.+......+|-.+|..++
T Consensus 266 ~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------------
T ss_pred hhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8898899999988776 66666666666677776665443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 561 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 6e-18 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 3e-08 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 414 bits (1067), Expect = e-140
Identities = 119/540 (22%), Positives = 214/540 (39%), Gaps = 55/540 (10%)
Query: 39 FIIMVEMAQRFAYYGLAGNLIQYLTNVLNE------PTATAAQDVNNWVGISSIFPLLGA 92
+II E +RF++YG+ L +L L A A +++V FPLLG
Sbjct: 16 YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG 75
Query: 93 FVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPC 152
++AD + G++NTIL S IY +G L++ + F+T L+++A+G GG KP
Sbjct: 76 WIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV------QGFYTGLFLIALGSGGIKPL 129
Query: 153 VQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAG 212
V +F DQFD+ N F+ +Y I FG+ A L L N G AV FG+
Sbjct: 130 VSSFMGDQFDQSNKS---LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGV 186
Query: 213 ALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDD 272
+ +A F +G KRY P V + + + G G
Sbjct: 187 LMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVS-- 244
Query: 273 DDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLAS----RERNPWRLCSLNQVEEVKLV 328
+ I + L AM++ + + + + V+ V+ V
Sbjct: 245 ------AAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSV 298
Query: 329 IRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPV 388
+R++ ++ F + Q + + Q + M + PA +Q+L L +++ +P
Sbjct: 299 LRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFEPAMMQALNPLLVMLLIPF 354
Query: 389 ITG--------HRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIV 440
+T L+++G G+ + L+ IV ++ +
Sbjct: 355 NNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGS------------- 401
Query: 441 PISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVI 500
+SI+W + Y L++ +V E Y Q P+AM+ + + + VG+
Sbjct: 402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461
Query: 501 EVVEAIT-HRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVLEDESKEE 559
V++ T + ++ F++ AG + L VF A+ + + + E
Sbjct: 462 VSVKSPTVTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFALYARSYQMQDHYRQATGSE 519
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 16/218 (7%)
Query: 40 IIMVEMAQRFAYYGLAGNLIQYLTNVLNE-----PTATAAQDVNNWVGISSIFPLLGAFV 94
+ M EM +RF+YYG+ L+ Y+ +++ ATAA + + + + +G FV
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 95 ADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQ 154
AD +G + + +G ++L+L + F ++ ++ +G G KP V
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVLALPFGA-------SALFGSIILIIIGTGFLKPNVS 130
Query: 155 TFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGAL 214
T +DE + + F+ + GI GA A L+ Q+ G+ V F + A +
Sbjct: 131 TLVGTLYDEHDRRRDAG----FSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGM 186
Query: 215 ALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKW 252
+ L ++ G K+ + + K
Sbjct: 187 FIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKV 224
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 8/143 (5%)
Query: 89 LLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGG 148
LL +++D + ++FM +V ++ V + V + ++ G
Sbjct: 306 LLCGWMSDKVFRGNRGA---TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362
Query: 149 HKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNVGWAVGFG 208
+ A + K G + F + G + G+ AA + Y D GW GF
Sbjct: 363 PVMLIGLHALELA---PKKAAGTAAGFTGLF--GYLGGSVAASAIVGYTVDFFGWDGGFM 417
Query: 209 VMAGALALALAIFLIGIKRYRKQ 231
VM G LA+ + ++ + +++
Sbjct: 418 VMIGGSILAVILLIVVMIGEKRR 440
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.92 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.88 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.56 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.52 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.48 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.33 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.21 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.08 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.34 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=275.38 Aligned_cols=439 Identities=21% Similarity=0.289 Sum_probs=289.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhhhHHHHHHHHHHHHhhhHHHHHhhh-ccCchHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNV-----LNEPTATAAQDVNNWVGISSIFPLLGAFVADS-YLGRFNTI 105 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr-~~Grk~~~ 105 (561)
+++|..+.+....++..+++|++.++++.|++++ +|.+..+.+++.+.+.++..++.+++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~ 88 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAV 88 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHH
Confidence 4567788888999999999999999999999988 99999999999999999999999999999999 7 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH
Q 008565 106 LLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF 185 (561)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 185 (561)
.++.++.+++.+++.++ ++.+.+++.|++.|++.+...+...++++|.+|+++.+ |+.+++.++.+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~ 157 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP-------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINL 157 (491)
T ss_dssp HHHHHHHHHHHHHHHSC-------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHHHHHHHH
Confidence 99999999999988887 68889999999999999999999999999999987632 66678889999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccC---CCC-CchhHHHHHHHH-------------H
Q 008565 186 GASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQA---PVG-SPFTTVAQVFVA-------------T 248 (561)
Q Consensus 186 G~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~-------------~ 248 (561)
|..++|.+++++.+..||++.|++.++..+++.+..+...++..+++ ++. ....+..+.... .
T Consensus 158 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 237 (491)
T 4aps_A 158 GAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVV 237 (491)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988777766666554443322211 111 111111110000 0
Q ss_pred HhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHH
Q 008565 249 ARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLV 328 (561)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
..... +. + .++................ ....|+... ....++++.
T Consensus 238 ~~~~~---------------~~--------------~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~ 282 (491)
T 4aps_A 238 MNLVG---------------WN--------------S--LPAYINLLTIVAIAIPVFY---FAWMISSVK-VTSTEHLRV 282 (491)
T ss_dssp HHHHS---------------SC--------------C--TTHHHHHHHHHHHHHHHHH---HHHHC-------------C
T ss_pred HHhcc---------------Cc--------------c--cccchhhhhHHHHHHHHHH---HHHHhhccc-ccHHHHHHH
Confidence 00000 00 0 0000000000000000000 000011000 111223333
Q ss_pred HHHHHHHHHHHHHHHHHhhccchheeeccc-ccccCCCceeeccccccchhhHHHHHHHHH----hhcCCCC-CCchhHH
Q 008565 329 IRLIPIWLSCLMFSCILVQLHTFFTKQGST-MRRSIGSNFQVPPASLQSLVGLSILVAVPV----ITGHRSG-ITMLQRI 402 (561)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~i 402 (561)
.....+++....++..+.+..+.+..+... .... ....+.....+.+..++..++ .+|..+| ......+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 344455556666666666655543333211 1111 123445555666666665555 3344332 2345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHH
Q 008565 403 GIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGA 482 (561)
Q Consensus 403 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~ 482 (561)
..+..+..++++++.+..... + ...+.+.++..+.+++.+++.+...|..++++.|..|++.||+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 688888888877766543110 0 001245667778888999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008565 483 AAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVY 548 (561)
Q Consensus 483 g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 548 (561)
|++++...+|..+++.+.+.+.+. +....|+..+++++++.++.++..++.++
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNAK-------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGS-------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888652 22346777777777777776666555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=278.08 Aligned_cols=469 Identities=25% Similarity=0.379 Sum_probs=282.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLN------EPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTIL 106 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~ 106 (561)
++|.++.+.+..++..+++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34556677888999999999999999999999999 999999999999999999999999999999449999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccc-hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhh---HHHHHHH
Q 008565 107 LSSFIYFMGMVLLSLAVSVIPLHY-RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSF---FNWWYLG 182 (561)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~ 182 (561)
++.++.+++.+++.++ . +.+.+++.|++.|++.+...+...++++|.+|+++ |++. ++..+..
T Consensus 90 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~ 156 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF-------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFT 156 (524)
T ss_dssp HHHHHHHHHHHHHHHT-------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHHHHHHH
Confidence 9999999999888887 5 78889999999999999999999999999999988 7554 4558999
Q ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCC
Q 008565 183 IVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGR 262 (561)
Q Consensus 183 ~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (561)
.++|..++|.+++++.+..||++.|++.++..+++.+..+...++.+++++++++..+..+......+++....+ ...
T Consensus 157 ~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 234 (524)
T 2xut_A 157 INFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIG- 234 (524)
T ss_dssp HHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHH-
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccc-
Confidence 999999999999999988999999998887776666555444443333222222111111111000010000000 000
Q ss_pred ccccCCCCCCCcccccccccccccccccch---------hhhhhhhhhcccccccccCCCC-------cccchhhhHHHH
Q 008565 263 GIYHGHELDDDDKRTDIGQSKRTIARTNQL---------RFLDKAMIIDEIDLASRERNPW-------RLCSLNQVEEVK 326 (561)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 326 (561)
.+. +.. .... . .......+.. .+.+.++. ...+| +.+.....++++
T Consensus 235 ~~~---~~~---~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 296 (524)
T 2xut_A 235 LVL---ALI---GGVS-A--AYALVNIPTLGIVAGLCCAMVLVMGFV---------GAGASLQLERARKSHPDAAVDGVR 296 (524)
T ss_dssp HHH---HHH---HHHH-H--HHTGGGTTTTCSSHHHHHHHHHHHHHH---------HTGGGTHHHHSCCSCCSSSSTTTT
T ss_pred hhh---hhh---hhhh-h--hhhhcccchhhhhhhhhhhhhhhhccc---------ccchhhHHhhhhccccHhHHHHHH
Confidence 000 000 0000 0 0000000000 00000000 00111 000001112233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcC--------CCCCCc
Q 008565 327 LVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGH--------RSGITM 398 (561)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 398 (561)
+.......+.....++..+.+..+.+..+....+.. .+ .+.+.+...+.+..++..++.++. .++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (524)
T 2xut_A 297 SVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA 372 (524)
T ss_dssp THHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh
Confidence 333344444444555555555444444333222211 10 133445555666666666664442 223344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHH
Q 008565 399 LQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMR 478 (561)
Q Consensus 399 ~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r 478 (561)
.+.+.+|+++..++++.+.+.+.. .+ .....+.+++++.+++.+++.+...|..++++.|.+|++.|
T Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 373 LRKMGAGIAITGLSWIVVGTIQLM----------MD---GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp HHHHHTHHHHHHHHHHTTTTTTTT----------TT---TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------hc---CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 556677877777776665442100 00 00123556677788999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccC-CCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 008565 479 SIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVD-NLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVLE 553 (561)
Q Consensus 479 g~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 553 (561)
|+++|++++...+|+.+++.+.+.+.+.+..+|.+. +.+ .....|++.+++++++.++++++.++.+.++.++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 999999999999999999999999876321123211 011 1123377788888888887777766655544433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=256.78 Aligned_cols=399 Identities=11% Similarity=0.023 Sum_probs=256.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
++.++.+....+...+..+...+.+|.+. +++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 34455566666777777666677777665 456 9999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHH----hhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSL----AVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 114 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
++.+++.+ . ++.+.+++.|++.|++.+...+...++++|.+|+++ |++++++.+.+.++|..+
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~ 170 (451)
T 1pw4_A 104 AVMLFMGFVPWAT-------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGI 170 (451)
T ss_dssp HHHHHHHHCHHHH-------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhhhcc-------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHH
Confidence 99999988 6 688899999999999999999999999999999888 999999999999999999
Q ss_pred HHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCC
Q 008565 190 AVLVAIYLQDNVG-WAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGH 268 (561)
Q Consensus 190 gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (561)
+|.+++++.+..| |++.|++.++..++..+..++..++.+.+....+. +
T Consensus 171 g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------------------- 220 (451)
T 1pw4_A 171 PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E----------------------------- 220 (451)
T ss_dssp HHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-----------------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-----------------------------
Confidence 9999999888888 99999998877766655554444432221110000 0
Q ss_pred CCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 269 ELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLC-SLNQVEEVKLVIRLIPIWLSCLMFSCILVQ 347 (561)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (561)
+.+. +.. ++....++ ....++.. .....++++.....+........++.....
T Consensus 221 ~~~~-~~~-------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 221 EYKN-DYP-------DDYNEKAE------------------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp TTCC-C--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcc-ccc-------ccchhhhh------------------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 00000000 00000000 000001111111111111122222222221
Q ss_pred ccchheeecccccccCCCceee-ccccccchhhHHHHHHHHHhhcCCCCC--CchhHHHHHHHHHH-HHHHHHHHHHHHH
Q 008565 348 LHTFFTKQGSTMRRSIGSNFQV-PPASLQSLVGLSILVAVPVITGHRSGI--TMLQRIGIGLFTSI-LTMIVAALVEAKR 423 (561)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~g~~~~~-~~~~~~~~~~~~~ 423 (561)
.+.+ .. ... +++. ..+.......++.++..++..+..+|. ++++.+..+..+.. ++++.+.+.
T Consensus 275 ~~~~-~~------~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 341 (451)
T 1pw4_A 275 SPTY-LK------EVK--HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---- 341 (451)
T ss_dssp HHHH-BT------TBS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHH-HH------Hhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----
Confidence 1111 11 111 1111 122333334444444444433333333 44455555555444 444433221
Q ss_pred HHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhh-hhhhhhHHHhh
Q 008565 424 VRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGV-GSFINTGVIEV 502 (561)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~-g~~lg~~v~~~ 502 (561)
...+.+......++.|++.....+..+.+..|..|++.||++.|+.+....+ |..+++.+.+.
T Consensus 342 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 342 ----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124455666677788888888888899999999999999999999999999 99999999999
Q ss_pred hcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 503 VEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 503 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
+.+.. ++...|++.+++.+++.++.+...++
T Consensus 406 l~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 406 TVDFF------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHSS------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98732 23557777788888877776665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-26 Score=237.43 Aligned_cols=355 Identities=14% Similarity=0.048 Sum_probs=233.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+++.++.+....++..+......+.+|. +++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 4445555666666677776666666665 5678999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHH---HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 113 FMGMVLL---SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 113 ~~~~~~~---~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
+++.+++ .+. ++.+.+++.|++.|++.+...+...++++|.+|+++ |++++++.+...++|..+
T Consensus 102 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~ 168 (438)
T 3o7q_A 102 ALGAALFWPAAEI-------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAII 168 (438)
T ss_dssp HHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc-------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHH
Confidence 9999888 555 689999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHhh-cccc-------------------------chHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHH
Q 008565 190 AVLVAIYLQ-DNVG-------------------------WAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQ 243 (561)
Q Consensus 190 gp~l~g~l~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (561)
+|.+++++. +..+ |++.|++.++..++..+..+..+. +++++++
T Consensus 169 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~-------- 238 (438)
T 3o7q_A 169 AVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDN-------- 238 (438)
T ss_dssp HHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTC--------
T ss_pred HHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccc--------
Confidence 999999988 5554 899997776655554444333211 1110000
Q ss_pred HHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhH
Q 008565 244 VFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVE 323 (561)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (561)
+.++ +..+ ..+. ++ .-.+
T Consensus 239 -------------------------~~~~--~~~~---------------~~~~----------------~~----~~~~ 256 (438)
T 3o7q_A 239 -------------------------HSDA--KQGS---------------FSAS----------------LS----RLAR 256 (438)
T ss_dssp -------------------------CCCS--STTS---------------HHHH----------------HH----HHTT
T ss_pred -------------------------cccc--cccc---------------hhhh----------------HH----HHHh
Confidence 0000 0000 0000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHH
Q 008565 324 EVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIG 403 (561)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (561)
+++.........+............+.++.......+. ...+.......++.++..++..+..+|.++++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 329 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA 329 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 01111111111111222222222222220111101111 11223333334444444444444344456667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHH
Q 008565 404 IGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAA 483 (561)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g 483 (561)
.+.++..++++.+.+. +........++.+++.+...|..+++..|..|++ ++.+.+
T Consensus 330 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 385 (438)
T 3o7q_A 330 AYALIAMALCLISAFA-----------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSS 385 (438)
T ss_dssp HHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHH
T ss_pred HHHHHHHHHHHHHHHc-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhh
Confidence 7777777766655542 1122344457778888888999999999999987 899999
Q ss_pred HHHHHhhhhhhhhhHHHhhhccc
Q 008565 484 AYISIIGVGSFINTGVIEVVEAI 506 (561)
Q Consensus 484 ~~~~~~~~g~~lg~~v~~~i~~~ 506 (561)
+.. .+.+|..++|.+.+.+.+.
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHH
Confidence 877 7789999999999999873
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-27 Score=249.68 Aligned_cols=405 Identities=13% Similarity=0.089 Sum_probs=225.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhc-----------ccccchhHHHHHH
Q 008565 70 TATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSV-----------IPLHYRKAVFFTA 138 (561)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~ 138 (561)
..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+++.+.... ....++...++++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 35578899999999999999999999997 99999999999999999988853100 0012688999999
Q ss_pred HHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc--------ccchHHHHHH
Q 008565 139 LYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN--------VGWAVGFGVM 210 (561)
Q Consensus 139 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~--------~g~~~~f~~~ 210 (561)
|+++|+|.|...+..+++++|..|++. |++..+..+.+..+|..+++.++..+... .+|+..+.+.
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASE 206 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhh
Confidence 999999999999999999999999999 99999999999999999998887766532 2356555544
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccccccccccccccccc
Q 008565 211 AGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTN 290 (561)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 290 (561)
.+..++.++..+. .|+.+.--..+.+.++..+.......+ ...
T Consensus 207 ~~~~~~~~~~~~~-~peSp~~L~~~~~~~~a~~~l~~~~~~------------------------------------~~~ 249 (491)
T 4gc0_A 207 CIPALLFLMLLYT-VPESPRWLMSRGKQEQAEGILRKIMGN------------------------------------TLA 249 (491)
T ss_dssp HHHHHHHHHHGGG-SCCCHHHHHHTTCHHHHHHHHHHHHHH------------------------------------HHH
T ss_pred hhhhhhhhhhhhc-CCCChHHHHHcCchhHHHHhHHHhcCC------------------------------------chh
Confidence 4443333332221 111110000000001100000000000 000
Q ss_pred chhhhhhhhhhcccccccccCCCCcccchhhhHHHHHH-HHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceee
Q 008565 291 QLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLV-IRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQV 369 (561)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (561)
+.+..+........ +....+ ......++. ......+............+.+.+.. ..+ ....
T Consensus 250 ~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~ 312 (491)
T 4gc0_A 250 TQAVQEIKHSLDHG-----RKTGGR----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-------TLG-ASTD 312 (491)
T ss_dssp HHHHHHHHHHHHHH-----HHHTTH----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSS-CCHH
T ss_pred HHHHHHHHHHHHhh-----hhhhhH----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-------hcC-CCcc
Confidence 00000000000000 000000 000000111 11111111111000000111111111 100 0000
Q ss_pred ccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHh
Q 008565 370 PPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLP 449 (561)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (561)
..........+..++...+.....+|.++++....+.....++++.++.... ...+.+..+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~ 374 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------------------TTCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------------------cccchHHHHH
Confidence 0111111222222222222222222344456666777777776666554321 0112222222
Q ss_pred HHHHHHHhh-hhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHH
Q 008565 450 QYLLVSICD-VFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVL 528 (561)
Q Consensus 450 ~~~l~g~g~-~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (561)
..++...+. ....|..+.+..|..|.+.|++++|+.+..+++++.+++.+.+.+.+.. |... ..+....|+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~---~~~~---~~~~~~~~~i~ 448 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS---WLVA---HFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH---HHHH---HHTTCHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh---hhhhhHHHHHH
Confidence 223332222 2335778899999999999999999999999999999999998876521 1100 01123467888
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccccc
Q 008565 529 AGLSALNLCVFIWIAKRFVYKKVLEDESKEE 559 (561)
Q Consensus 529 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (561)
+++++++.++.+++.+|+|+|+.||.|+..|
T Consensus 449 ~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 9999999999999999999999998765443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-24 Score=217.93 Aligned_cols=345 Identities=10% Similarity=0.071 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMV 117 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~ 117 (561)
+.+....++..+......+.+|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 345566677777777777777775 467999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008565 118 LLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l 197 (561)
+..+. ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++..+....+|..++|.+++++
T Consensus 81 ~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 81 VAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 98888 688899999999999999999999999999999988 99999999999999999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccc
Q 008565 198 QDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRT 277 (561)
Q Consensus 198 ~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (561)
.+..||+..|++.++..++..+......|+. +++++ +.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------------------~~~------ 186 (375)
T 2gfp_A 148 DTMWNWRACYLFLLVLCAGVTFSMARWMPET---RPVDA--------------------------------PRT------ 186 (375)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC---STTTC--------------------------------CCC------
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHCccc---CCCCc--------------------------------ccc------
Confidence 9988999999887766555443222222211 11000 000
Q ss_pred cccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHhhccchheeec
Q 008565 278 DIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRL-IPIWLSCLMFSCILVQLHTFFTKQG 356 (561)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (561)
+ ..++++ +..++ |..... .........+.......+.++.. .
T Consensus 187 ~-------------------------------~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 229 (375)
T 2gfp_A 187 R-------------------------------LLTSYK----TLFGN-SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-V 229 (375)
T ss_dssp C-------------------------------TTTCST----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-H
T ss_pred c-------------------------------HHHHHH----HHhcC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0 001110 11111 222211 11111111222221111111111 0
Q ss_pred ccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHH-HHHHHH--HHHHHHHHHHHHhhhcCCC
Q 008565 357 STMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFT-SILTMI--VAALVEAKRVRTARENGLI 433 (561)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 433 (561)
...+. ...+.......++.++..++..+..+|.++ ++..+..+ ...+.. ......
T Consensus 230 ~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~------------- 287 (375)
T 2gfp_A 230 LGLSS-------MTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWFG------------- 287 (375)
T ss_dssp HHHHH-------HHHHHHHHTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHHH-------------
T ss_pred hCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc-------------
Confidence 01111 112234444556666666666666554433 33333333 222222 111110
Q ss_pred CCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 434 DSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
..+.+......++.+++.+...|...++..|..| +.||++.|+.+....+|..+++.+.+.+.+
T Consensus 288 -------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 288 -------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred -------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1244556667788899999999999999999998 889999999999999999999999988865
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-23 Score=219.18 Aligned_cols=391 Identities=8% Similarity=-0.059 Sum_probs=217.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|..+.+....++..+++....+++|.|+++++|++..+.|++.+.+.++..++++++|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666666777777777889999999998999999999999999999999999999999997 999999988777654
Q ss_pred HHHHHHHhhhcccccchh-HHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRK-AVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+...+...... ... ..+...+++.+++.+...+...+...+..++..+ .|+..++..+...++|..++|.+
T Consensus 86 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~g~~~~~~l 157 (417)
T 2cfq_A 86 MFAPFFIFIFG----PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp CHHHHHHHTHH----HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHHHSSSTTTHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHHHHHHHHHHHHHHHHH
Confidence 32222111000 000 0122344444444443333434444444433210 05666777777888999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
++++.+ .+|+..|++.++..++..+..+...++ +++..+ +.+++
T Consensus 158 ~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------------------~~~~~ 201 (417)
T 2cfq_A 158 VGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT-------------------------------VANAV 201 (417)
T ss_dssp HHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC-------------------------------SSSSS
T ss_pred HHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc-------------------------------ccccc
Confidence 999887 579998887665433332222111111 110000 00000
Q ss_pred cccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchh
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQL-HTFF 352 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 352 (561)
+ ..+ ++.+..+.. +..++ +...............+..+.+. +.++
T Consensus 202 ~-~~~-----------~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (417)
T 2cfq_A 202 G-ANH-----------SAFSLKLAL---------------------ELFRQ-PKLWFLSLYVIGVSCTYDVFDQQFANFF 247 (417)
T ss_dssp S-SCC-----------CCCCHHHHH---------------------HHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccc-----------ccccHHHHH---------------------HHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000000000 00011 11111111111111111222222 2222
Q ss_pred eeecccccccCCCcee-eccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008565 353 TKQGSTMRRSIGSNFQ-VPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENG 431 (561)
Q Consensus 353 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (561)
... .... +.. ...+....++.+..++..++..+..+|.++++.+..+..+..++++.+.+.
T Consensus 248 ~~~---~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------------ 309 (417)
T 2cfq_A 248 TSF---FATG---EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------ 309 (417)
T ss_dssp HHT---SSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHH---Hhcc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 111 1100 000 001222333333333344443343444555666666776666655444321
Q ss_pred CCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHH-HHHHhhhhhhhhhHHHhhhcccccCC
Q 008565 432 LIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAA-YISIIGVGSFINTGVIEVVEAITHRS 510 (561)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~g~~lg~~v~~~i~~~~~~~ 510 (561)
.+.+.++...++.+++.....+....++.|..|++.||++.++ +++.+++|+.++|.+.|.+.+.
T Consensus 310 ----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---- 375 (417)
T 2cfq_A 310 ----------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---- 375 (417)
T ss_dssp ----------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH----
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh----
Confidence 1233444445556666666667778899999999999999999 5888899999999999988762
Q ss_pred cccCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008565 511 WLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAK 544 (561)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 544 (561)
.++...|.+.+++++++.++.++..+
T Consensus 376 --------~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 376 --------IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp --------SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred --------cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 12345677777777777766554444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.7e-14 Score=146.12 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=150.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhcc--CchHHHHHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYL--GRFNTILLSSFI 111 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~--Grk~~~~~~~~~ 111 (561)
.|.++.+++..++..+..+++..++|.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3567777888888889999999999999998899999999999999999999999999999999 5 888888777666
Q ss_pred HH-HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH-HHHH
Q 008565 112 YF-MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF-GASA 189 (561)
Q Consensus 112 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~i 189 (561)
.. ++.+++.+. ...+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++.+...++ |..+
T Consensus 330 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~g~~~ 398 (451)
T 1pw4_A 330 LVTIATIVYWMN-----PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVA 398 (451)
T ss_dssp HHHHHHHHTTSC-----CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHHHHHHHHH
Confidence 55 444444333 11256666777778888888888888899999999988 99999999999999 9999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
+|.+.|++.+..||+..|++.++..+++.+..+...
T Consensus 399 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 399 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887777766655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=142.28 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQY-LTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
|.++...+..++.....+++..++|.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+.+.++.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456666677777778888889999999 8888899999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++.+++.+. ++...+ ...++.+++.+...|...++..|.+|++ ++.+.++.. ...+|..++|.+
T Consensus 337 ~~~~~~~~~-------~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 337 ALCLISAFA-------GGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHHC-------CHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHHc-------CCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHHHHHHHH
Confidence 887777766 344433 3447788888888899999999998854 555556554 566999999999
Q ss_pred HHHhhcccc-chHHHHHHHHHHHHHH
Q 008565 194 AIYLQDNVG-WAVGFGVMAGALALAL 218 (561)
Q Consensus 194 ~g~l~~~~g-~~~~f~~~~~~~~i~~ 218 (561)
.|++.+..| ++..|++.++..++..
T Consensus 401 ~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 401 MGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999999988 9999887665544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=140.46 Aligned_cols=178 Identities=10% Similarity=0.067 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNE---PTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
|..+......+.....++....++|.|+.+.++. +....+...++..++..++.++.|+++||+ |||+++..+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444444444555566667789998776553 234457777777888889999999999997 999999888777
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHH-HHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNW-WYLGIVFGASAA 190 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ig 190 (561)
.+++.+++.+. ++.+.+++...+.+++.+...+....+++|.+|++. |+++.+. ++....+|..++
T Consensus 299 ~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 299 MSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHh
Confidence 77665555444 355566666667777766666777889999999998 9999998 578888999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
|.++|++.+..|++..|.+.++..+++.+..+...+
T Consensus 366 p~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp THHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998888988998888777776665544333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.9e-12 Score=133.00 Aligned_cols=184 Identities=8% Similarity=0.029 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHH-----HHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTIL-----LSSFI 111 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~-----~~~~~ 111 (561)
.+.+....++....+.....+++.|.++.++.+..+.+++.+...++..++.++.|+++||+ |||+... .+..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44445555556666667778899999988888878889999999999999999999999997 9886544 56666
Q ss_pred HHHHHHHHHHhhhc--ccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSV--IPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 112 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
.+++.+++...... .....+...+.+..++.|++.+...+...+++.|.+|++. |+++.++.+...++|..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHH
Confidence 66665555443100 0111255666777788999999888999999999999999 999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccc
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRY 228 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~ 228 (561)
+|.+.+++.+. ++...|.+.++..+++.+..+...++.
T Consensus 438 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 438 NAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888764 677778777776666666665555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=121.16 Aligned_cols=184 Identities=12% Similarity=0.086 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRF-AYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 37 ~~~l~~~~~~~~~-~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
........++..+ +.+.+..+. .++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYA-PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH-HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcc-hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 3333333444433 344444444 445567788888888888888889999999999999997 9999999988888777
Q ss_pred HHHHHHhhhcccccchhHHHH-HHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFF-TALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+.+..... ....+...+. ...+..+++. ...+....+.+|.+|.+. |+++.++.+....+|..+++.+.
T Consensus 356 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~ 426 (491)
T 4gc0_A 356 MFSLGTAFY--TQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTF 426 (491)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHh--cccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554421 1111222222 2222223332 345777889999999999 99999999999999999998887
Q ss_pred HHhhc------cccchHHHHHHHHHHHHHHHHHHHhccccccc
Q 008565 195 IYLQD------NVGWAVGFGVMAGALALALAIFLIGIKRYRKQ 231 (561)
Q Consensus 195 g~l~~------~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 231 (561)
+.+.+ ..++...|++.++..+++.+..+++.||.+.+
T Consensus 427 p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 427 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 76643 24566778888888888877777777765443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-11 Score=123.87 Aligned_cols=162 Identities=8% Similarity=-0.032 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH-HH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI-YF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~-~~ 113 (561)
|..+......++.....+....++|.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566777777888888889999999999988999999999999999999999999999999997 772 2333332 22
Q ss_pred HHHH--HHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 114 MGMV--LLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 114 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.+.. ...... ..+.+.+++..++.+++.+...+...+++.|.+| ++ |+++.++.+...++|..++|
T Consensus 276 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 276 AGLLMWIPDWFG-----VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp TSSSSSHHHHHH-----HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhhhc-----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHHHHHHHHHHHH
Confidence 2222 111110 0255566677788899999889999999999998 66 99999999999999999999
Q ss_pred HHHHHhhccccchHHHHHHH
Q 008565 192 LVAIYLQDNVGWAVGFGVMA 211 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~ 211 (561)
.+.+.+.+..+|+..+++.+
T Consensus 344 ~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 344 SLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp TTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccHHHHHHH
Confidence 99999988777877776644
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-07 Score=98.73 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHh----hhccCc----hHHHHHHHHHHHHHHHHHHHhhhcc--cccchhHHHHHHHHH
Q 008565 72 TAAQDVNNWVGISSIFPLLGAFVA----DSYLGR----FNTILLSSFIYFMGMVLLSLAVSVI--PLHYRKAVFFTALYI 141 (561)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~G~ls----Dr~~Gr----k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l 141 (561)
..+.+.....++..+..++.+++. ||. |+ ++.+.+++++.+++.+++.+..... ....+.+.+++..++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYAL 414 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 345555555555566666666654 443 43 2455566666666655554431000 011355667777888
Q ss_pred HHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc--cc---------hHHHHHH
Q 008565 142 LAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV--GW---------AVGFGVM 210 (561)
Q Consensus 142 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~--g~---------~~~f~~~ 210 (561)
.|++.+...+...+++.|.+|++. |++++|+.+...++|..++|.+.+.+.+.. +| +..|++.
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFF 488 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHH
Confidence 999999889999999999999998 999999999999999999999999988742 23 3336666
Q ss_pred HHHHHHHHHHHHHhccc
Q 008565 211 AGALALALAIFLIGIKR 227 (561)
Q Consensus 211 ~~~~~i~~~~~~~~~~~ 227 (561)
++..+++.+..+...++
T Consensus 489 ~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 489 AGFAILAAIVFALYARS 505 (524)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65555555554444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.51 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.47 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.7e-26 Score=239.58 Aligned_cols=162 Identities=10% Similarity=0.054 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHH
Q 008565 55 AGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAV 134 (561)
Q Consensus 55 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (561)
.+.+..+++ ++|+|.++.|++.+++.++..++.+++|+++||+ |||+++.++.++..++.+++.+.. ....+...
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 118 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVP---WATSSIAV 118 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCH---HHHSSSSH
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccc---hhhhhHHH
Confidence 344555776 5899999999999999999999999999999997 999999999999988888776652 01136778
Q ss_pred HHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHH
Q 008565 135 FFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN-VGWAVGFGVMAGA 213 (561)
Q Consensus 135 l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~-~g~~~~f~~~~~~ 213 (561)
+++.|++.|++.+...+...++++|.+|+++ |++++++.+.+.++|..++|.+++.+.+. .+|++.|++.++.
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 9999999999999999999999999999998 99999999999999999999998876654 4799999888777
Q ss_pred HHHHHHHHHHhccc
Q 008565 214 LALALAIFLIGIKR 227 (561)
Q Consensus 214 ~~i~~~~~~~~~~~ 227 (561)
.++..+..+...++
T Consensus 193 ~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 193 AILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccc
Confidence 66655555554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.3e-24 Score=221.07 Aligned_cols=393 Identities=8% Similarity=-0.070 Sum_probs=235.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|+.|.+....++..++.....+++|.|+++++|+|.++.|++.+++.++..+++++.|+++||+ ||||+++++.....+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5788888888888888888899999999999999999999999999999999999999999998 999999999888888
Q ss_pred HHHHHHHhhhcccccchhHHH----HHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRKAVF----FTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAA 190 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l----~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig 190 (561)
+..++.+. .+.... +..+.+.+.+.+...........+..+++.. ++....+........+..++
T Consensus 86 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 154 (417)
T d1pv7a_ 86 MFAPFFIF-------IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp THHHHHHH-------THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHH----HHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-------hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhh----hhHHHHHHHhhhhccccccc
Confidence 77777665 222222 2333333333333333333333333332211 14556667777888999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCC
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHEL 270 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (561)
|.+++.+.+. +|+..+........+..+..+...++.+.++.++++.. +.
T Consensus 155 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~ 204 (417)
T d1pv7a_ 155 ASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-----------------------------AN 204 (417)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-----------------------------SC
T ss_pred cccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-----------------------------hh
Confidence 9999988874 45555555554444444444433332221111110000 00
Q ss_pred CCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008565 271 DDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQLHT 350 (561)
Q Consensus 271 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (561)
+ +.....+.... . +. ...+... ...................
T Consensus 205 ~------------------~~~~~~~~~~~---------~---------~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~ 245 (417)
T d1pv7a_ 205 H------------------SAFSLKLALEL---------F---------RQ-PKLWFLS--LYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp C------------------CCCCHHHHHHH---------T---------TS-SHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred c------------------ccccccccccc---------c---------cc-ccccchh--hhhHHHHHHHHhhhccccc
Confidence 0 00000000000 0 00 0001111 1111111111111111111
Q ss_pred hheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008565 351 FFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTAREN 430 (561)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (561)
...... .+... .............+...+...+..+..+|..+++.+..+.++..++.+.+.+.
T Consensus 246 ~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------- 309 (417)
T d1pv7a_ 246 FFTSFF--ATGEQ---GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------- 309 (417)
T ss_dssp HHTTSS--SCHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred cccccc--ccccc---chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----------
Confidence 111100 00000 00011122223334444444445555555667777788888887777666552
Q ss_pred CCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHH-HHHhhhhhhhhhHHHhhhcccccC
Q 008565 431 GLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAY-ISIIGVGSFINTGVIEVVEAITHR 509 (561)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~~~g~~lg~~v~~~i~~~~~~ 509 (561)
.+.+......++.+++.+...+...+++.|..|++.||++.++. ++...+|..+++.+.|++.|..
T Consensus 310 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-- 376 (417)
T d1pv7a_ 310 -----------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-- 376 (417)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH--
T ss_pred -----------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34566777778889999999999999999999999999999985 4567799999999999998732
Q ss_pred CcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008565 510 SWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFV 547 (561)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 547 (561)
++...|++.++++++..++.++..++.+
T Consensus 377 ----------g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 377 ----------GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3355778888888888777777765443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.6e-13 Score=140.49 Aligned_cols=183 Identities=16% Similarity=0.105 Sum_probs=141.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
..+.++.+....++.....++...+++.|+.+.++.+..+.+...+...++..++.+++|+++||+ +|++.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM 325 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence 345677777788888889999999999999999999999999999999999999999999999997 8776444433332
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH-HHHHHH
Q 008565 113 FMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF-GASAAV 191 (561)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~igp 191 (561)
.+......... .....+.....+..++.|++.+...+....+..|.+|++. |+++.|+.+...++ |.+++|
T Consensus 326 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~g~~~~~ 397 (447)
T d1pw4a_ 326 TLVTIATIVYW--MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAAS 397 (447)
T ss_dssp HHHHHHHHHTT--SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 22222221110 0122456666677777888888778888899999999988 99999998887776 567789
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 192 LVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
.+.|++.+..||+..|++.++..+++.++....
T Consensus 398 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 398 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988777666665554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=6.5e-14 Score=140.83 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=124.9
Q ss_pred cCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHh
Q 008565 66 LNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVG 145 (561)
Q Consensus 66 lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g 145 (561)
.+.+....+...+...++..++..+.|++.||+ |||+.+.++..+..++.+...+. ++.+.+++..++.|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~ 325 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFE 325 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc-------cccchhhHHHHHHHHH
Confidence 344556677888888888999999999999997 99999999999888888888877 6788888888899999
Q ss_pred ccccchhhhhHhhhhcccCCCCccccchhhHHHH-HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008565 146 EGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWW-YLGIVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIG 224 (561)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (561)
.+...+...+++.|.+|++. |++.++.. +....+|..++|.+.|++.|..|++..|++.++..++..+...+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 326 VPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 99999984 566789999999999999999999999988887776665555544
Q ss_pred c
Q 008565 225 I 225 (561)
Q Consensus 225 ~ 225 (561)
.
T Consensus 400 l 400 (417)
T d1pv7a_ 400 L 400 (417)
T ss_dssp S
T ss_pred h
Confidence 3
|