Citrus Sinensis ID: 008566
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | 2.2.26 [Sep-21-2011] | |||||||
| Q1DY01 | 772 | Protein transport protein | N/A | no | 0.944 | 0.686 | 0.460 | 1e-137 | |
| A4R1J7 | 770 | Protein transport protein | N/A | no | 0.942 | 0.687 | 0.456 | 1e-137 | |
| Q4PE39 | 773 | Protein transport protein | N/A | no | 0.925 | 0.671 | 0.448 | 1e-137 | |
| Q2HB00 | 773 | Protein transport protein | N/A | no | 0.944 | 0.685 | 0.450 | 1e-135 | |
| P0CR38 | 763 | Protein transport protein | yes | no | 0.934 | 0.686 | 0.453 | 1e-135 | |
| P0CR39 | 763 | Protein transport protein | N/A | no | 0.934 | 0.686 | 0.453 | 1e-135 | |
| Q9C284 | 775 | Protein transport protein | N/A | no | 0.948 | 0.686 | 0.445 | 1e-135 | |
| Q2URM9 | 769 | Protein transport protein | yes | no | 0.932 | 0.680 | 0.452 | 1e-135 | |
| Q0US25 | 776 | Protein transport protein | N/A | no | 0.944 | 0.682 | 0.451 | 1e-135 | |
| A2Q8L1 | 768 | Protein transport protein | yes | no | 0.930 | 0.679 | 0.448 | 1e-134 |
| >sp|Q1DY01|SEC23_COCIM Protein transport protein SEC23 OS=Coccidioides immitis (strain RS) GN=SEC23 PE=3 SV=1 | Back alignment and function desciption |
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Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/549 (46%), Positives = 348/549 (63%), Gaps = 19/549 (3%)
Query: 3 EFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCR 62
++ ++E +DG+R+ WN P T+ EAS VVP+ AIYTP+K P P+L Y P+ C+
Sbjct: 9 QWSEIEDRDGIRLSWNTFPSTRMEASRLVVPIGAIYTPLKERP----DAPLLQYEPVTCK 64
Query: 63 T-CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPG 121
CR++LNP++ VD A+IWICPFC QRN PPHY IT++ +P EL PQ TTIEY+
Sbjct: 65 QPCRAVLNPYANVDIRARIWICPFCLQRNPLPPHYKDITENTIPPELHPQSTTIEYQLAR 124
Query: 122 PGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGG 181
P + PP+F+FVVDTC E+ + +K +L ++ LLP N+LVGLITFGT+ QVHELG
Sbjct: 125 P---APAPPIFLFVVDTCQEEDGLKAVKDSLVMSLSLLPPNALVGLITFGTMAQVHELGY 181
Query: 182 FGQIIPKTYVFKGSKDVSKDQLLEQLNFF---IKKPKPSTGVIAGVRDGLSSDTIARFLV 238
K+YVFKGSKD + Q+ E L ++ P P R + ARFL+
Sbjct: 182 --TECAKSYVFKGSKDYTPKQIQEMLGLLAPGLRAPAPQQ---QPGRPAPAVAPAARFLL 236
Query: 239 PAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298
P +F + +VLE+LQ+DPWPV D+R RCTG ALS+A L+ +G RI+ F
Sbjct: 237 PVQQADFQITNVLEQLQQDPWPVANDRRPLRCTGVALSVAIGLMETSFQNAGGRIMLFTS 296
Query: 299 GPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358
GP+TEGP +V L EPIRSH D+D+D+ +Y KAVKFYD L+K++ H GH++D+F +
Sbjct: 297 GPATEGPGLVVGPQLREPIRSHHDIDRDNIKYYKKAVKFYDNLAKRVSHNGHIVDIFIGS 356
Query: 359 LDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCS 417
LDQVG+ E+K V TGG +VL+D+F + FK S RVF + +L + N E+ +
Sbjct: 357 LDQVGLLEMKGLVNSTGGHMVLTDAFTSSQFKQSFVRVFDRDANDNLVMGFNAALEVLTT 416
Query: 418 KDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDA 477
K++KV G+IG SL KK + G GNT +WKMCG+D A S + FEI + P A
Sbjct: 417 KELKVTGLIGHAVSLNKKSSSVGETECGIGNTCSWKMCGIDPAASYGIYFEIANQGGP-A 475
Query: 478 TLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMAR 537
+Q ++ QFLTYYQH+ GQ LRVTT++R ++ P L FDQEAAAV+MAR
Sbjct: 476 PMQQGPHKAMMQFLTYYQHSSGQYHLRVTTVARP-LSSPAGDSALAQSFDQEAAAVLMAR 534
Query: 538 LVSFKMEIE 546
+ FK +++
Sbjct: 535 IAVFKADVD 543
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Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Coccidioides immitis (strain RS) (taxid: 246410) |
| >sp|A4R1J7|SEC23_MAGO7 Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2HB00|SEC23_CHAGB Protein transport protein SEC23 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|P0CR38|SEC23_CRYNJ Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|P0CR39|SEC23_CRYNB Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9C284|SEC23_NEUCR Protein transport protein sec-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2URM9|SEC23_ASPOR Protein transport protein sec23 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0US25|SEC23_PHANO Protein transport protein SEC23 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SEC23 PE=3 SV=2 | Back alignment and function description |
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| >sp|A2Q8L1|SEC23_ASPNC Protein transport protein sec23 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec23 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| 255571157 | 761 | protein transport protein sec23, putativ | 0.959 | 0.706 | 0.855 | 0.0 | |
| 449470750 | 761 | PREDICTED: protein transport protein SEC | 0.964 | 0.710 | 0.848 | 0.0 | |
| 449498965 | 761 | PREDICTED: protein transport protein SEC | 0.964 | 0.710 | 0.848 | 0.0 | |
| 449454554 | 769 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.964 | 0.703 | 0.836 | 0.0 | |
| 356558936 | 765 | PREDICTED: protein transport protein SEC | 0.967 | 0.709 | 0.805 | 0.0 | |
| 224129388 | 773 | predicted protein [Populus trichocarpa] | 0.967 | 0.702 | 0.815 | 0.0 | |
| 356504446 | 767 | PREDICTED: protein transport protein SEC | 0.967 | 0.707 | 0.797 | 0.0 | |
| 225464297 | 761 | PREDICTED: protein transport protein SEC | 0.964 | 0.710 | 0.797 | 0.0 | |
| 357513131 | 763 | Protein transport protein SEC23 [Medicag | 0.959 | 0.705 | 0.803 | 0.0 | |
| 297744803 | 800 | unnamed protein product [Vitis vinifera] | 0.964 | 0.676 | 0.744 | 0.0 |
| >gi|255571157|ref|XP_002526529.1| protein transport protein sec23, putative [Ricinus communis] gi|223534204|gb|EEF35920.1| protein transport protein sec23, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/546 (85%), Positives = 508/546 (93%), Gaps = 8/546 (1%)
Query: 1 MTEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLR 60
M EFMDLEAQDGVRMPWNV+PG+KQEASNCVVPVSAIYTPIK FP +MP+LPYAPLR
Sbjct: 1 MAEFMDLEAQDGVRMPWNVLPGSKQEASNCVVPVSAIYTPIKPFP----NMPVLPYAPLR 56
Query: 61 CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPP 120
CRTCRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHY SI+DDNLPAELFPQYTTIEYE
Sbjct: 57 CRTCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYGSISDDNLPAELFPQYTTIEYE-- 114
Query: 121 GPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELG 180
PGEK S VFMFVVDTCIIEEEM+FLKSALSQAIDLLPDNSLVGLITFGTLV VHELG
Sbjct: 115 TPGEKFSYSSVFMFVVDTCIIEEEMAFLKSALSQAIDLLPDNSLVGLITFGTLVHVHELG 174
Query: 181 GFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPA 240
FGQI PKTYVF+GSKDVSKDQLL+Q+ FF+KKPKP TGVIAG RDGLSS++I+RFL+PA
Sbjct: 175 -FGQI-PKTYVFRGSKDVSKDQLLDQMGFFLKKPKPPTGVIAGARDGLSSESISRFLLPA 232
Query: 241 FDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGP 300
+CEFTLNSVLEELQKDPWP+PPD R+ RCT TA+S+AASLLGACVPG GARI+AF+GGP
Sbjct: 233 SECEFTLNSVLEELQKDPWPIPPDHRAARCTSTAISVAASLLGACVPGCGARIMAFIGGP 292
Query: 301 STEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360
STEG AIVSKNLSEPIRSHKDLDKD+APH+HKAVKFY+ L+KQLVHQGHVLDLFACALD
Sbjct: 293 STEGLGAIVSKNLSEPIRSHKDLDKDTAPHFHKAVKFYEGLAKQLVHQGHVLDLFACALD 352
Query: 361 QVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDI 420
QVGVAELKVAVE+TGGLVVL++SFGH+VFKDS+RRVF S D DLGLSSNGIFEINCSKD+
Sbjct: 353 QVGVAELKVAVERTGGLVVLAESFGHSVFKDSLRRVFQSSDCDLGLSSNGIFEINCSKDV 412
Query: 421 KVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQ 480
KVQGIIGPCASLEKKGPLCSD VVGQGNTSAWKMCGLDKAT+LC++FEIVKK+ DAT+Q
Sbjct: 413 KVQGIIGPCASLEKKGPLCSDTVVGQGNTSAWKMCGLDKATTLCIIFEIVKKDNLDATVQ 472
Query: 481 STNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVS 540
T+NQFYFQFLTYYQH+ GQMRLRVTTLSRRWVAG GS+QDLIAGFDQEAAA+ MARLVS
Sbjct: 473 PTSNQFYFQFLTYYQHSNGQMRLRVTTLSRRWVAGSGSIQDLIAGFDQEAAAIAMARLVS 532
Query: 541 FKMEIE 546
FKMEIE
Sbjct: 533 FKMEIE 538
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470750|ref|XP_004153079.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449498965|ref|XP_004160683.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449454554|ref|XP_004145019.1| PREDICTED: LOW QUALITY PROTEIN: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356558936|ref|XP_003547758.1| PREDICTED: protein transport protein SEC23-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224129388|ref|XP_002320574.1| predicted protein [Populus trichocarpa] gi|222861347|gb|EEE98889.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356504446|ref|XP_003521007.1| PREDICTED: protein transport protein SEC23-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225464297|ref|XP_002265101.1| PREDICTED: protein transport protein SEC23-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357513131|ref|XP_003626854.1| Protein transport protein SEC23 [Medicago truncatula] gi|355520876|gb|AET01330.1| Protein transport protein SEC23 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297744803|emb|CBI38071.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| TAIR|locus:2049324 | 761 | AT2G21630 "AT2G21630" [Arabido | 0.966 | 0.712 | 0.698 | 3.7e-206 | |
| TAIR|locus:2129460 | 773 | AT4G14160 "AT4G14160" [Arabido | 0.953 | 0.692 | 0.595 | 5.9e-176 | |
| TAIR|locus:2201051 | 783 | AT1G05520 "AT1G05520" [Arabido | 0.951 | 0.681 | 0.582 | 6.4e-170 | |
| UNIPROTKB|A4R1J7 | 770 | SEC23 "Protein transport prote | 0.942 | 0.687 | 0.457 | 3.6e-128 | |
| ASPGD|ASPL0000061491 | 771 | sec23 [Emericella nidulans (ta | 0.946 | 0.688 | 0.464 | 1.1e-126 | |
| UNIPROTKB|Q15436 | 765 | SEC23A "Protein transport prot | 0.932 | 0.683 | 0.450 | 5.7e-123 | |
| UNIPROTKB|E1C3Y5 | 765 | SEC23A "Protein transport prot | 0.939 | 0.688 | 0.444 | 1.2e-122 | |
| MGI|MGI:1349635 | 765 | Sec23a "SEC23A (S. cerevisiae) | 0.932 | 0.683 | 0.450 | 1.2e-122 | |
| RGD|1309103 | 765 | Sec23a "Sec23 homolog A (S. ce | 0.932 | 0.683 | 0.450 | 1.2e-122 | |
| FB|FBgn0262125 | 773 | Sec23 "Sec23 ortholog (S. cere | 0.948 | 0.688 | 0.443 | 1.5e-122 |
| TAIR|locus:2049324 AT2G21630 "AT2G21630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1994 (707.0 bits), Expect = 3.7e-206, P = 3.7e-206
Identities = 385/551 (69%), Positives = 455/551 (82%)
Query: 1 MTEFMDLEAQDGVRMPWNVIP-GTKQEAS-NCVVPVSAIYTPIKAFPVNNNSMPILPYAP 58
M EF +LEAQDGVRMPWN+IP TK+E S + VPVSAIYTP+K P+ + S+ +LPY+P
Sbjct: 1 MAEFGELEAQDGVRMPWNIIPVATKKEQSIDSEVPVSAIYTPLK--PLRSQSL-LLPYSP 57
Query: 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYE 118
LRCRTCRS+LNP+S+VDF+A W CPFCF RN FP +Y+S+ D+NLP ELFP TT+EY
Sbjct: 58 LRCRTCRSVLNPYSVVDFSACNWGCPFCFNRNPFPLNYSSVADNNLPPELFPHSTTVEYL 117
Query: 119 PPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHE 178
S PPVF+FVVDTC+I EE+ FLKS+L QA+DLLPD S++GLITF +LV+V+E
Sbjct: 118 CDSFSSPS--PPVFLFVVDTCLISEELDFLKSSLFQALDLLPDTSILGLITFDSLVRVYE 175
Query: 179 LGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLV 238
LG F K+Y F G+KD +KDQLL+QL+FF+K PKPS+GVIAG RDGLSSD IARFL+
Sbjct: 176 LG-FPHCT-KSYFFHGNKDCTKDQLLDQLSFFVKNPKPSSGVIAGARDGLSSDDIARFLL 233
Query: 239 PAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298
PA DC FTL+SVLEEL PWPV D R RCTG AL IAASLLGAC PGS ARI+AF+G
Sbjct: 234 PASDCHFTLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAARIMAFIG 293
Query: 299 GPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358
GPST+GP AIVS+ LS+PIRSHKD+DKDSA +YHKAV+FY+ L+KQLVHQGHVLD+FA +
Sbjct: 294 GPSTQGPGAIVSRELSDPIRSHKDIDKDSAMYYHKAVEFYEMLAKQLVHQGHVLDVFASS 353
Query: 359 LDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSK 418
+DQVG+AELKVAVE+TGG VVL++SFGH+VF+DS++RV SG+ DLGLSS GIFEINCSK
Sbjct: 354 VDQVGIAELKVAVEQTGGFVVLAESFGHSVFRDSLKRVCQSGENDLGLSSCGIFEINCSK 413
Query: 419 DIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDAT 478
DIKVQGIIGPCASLEKKGPLCSD +GQG+TSAWKMCGLD TS+CLVFEI K + D
Sbjct: 414 DIKVQGIIGPCASLEKKGPLCSDTAIGQGHTSAWKMCGLDNNTSICLVFEIAKIDTADVV 473
Query: 479 LQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARL 538
LQS +NQFYFQFLTYYQH+ GQ RLRVTTLSRRWV G S+Q+L GFDQEAAAVVMARL
Sbjct: 474 LQSQSNQFYFQFLTYYQHSNGQTRLRVTTLSRRWVMGTESLQELSNGFDQEAAAVVMARL 533
Query: 539 VSFKMEIEVIF 549
+S KME + F
Sbjct: 534 ISSKMETQPEF 544
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| TAIR|locus:2129460 AT4G14160 "AT4G14160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2201051 AT1G05520 "AT1G05520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A4R1J7 SEC23 "Protein transport protein SEC23" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000061491 sec23 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15436 SEC23A "Protein transport protein Sec23A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C3Y5 SEC23A "Protein transport protein Sec23A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1349635 Sec23a "SEC23A (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1309103 Sec23a "Sec23 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| FB|FBgn0262125 Sec23 "Sec23 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 561 | |||
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 0.0 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 1e-168 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 1e-146 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 2e-72 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 1e-69 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-23 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 2e-19 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 6e-19 |
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
Score = 1026 bits (2654), Expect = 0.0
Identities = 376/548 (68%), Positives = 443/548 (80%), Gaps = 10/548 (1%)
Query: 3 EFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCR 62
+F +LEA DGVRM WNV P +K EAS CV+P++A+YTP+K P +P+LPY PLRCR
Sbjct: 2 DFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLPYDPLRCR 57
Query: 63 TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGP 122
TCR++LNP+ VDF AKIWICPFCFQRNHFPPHY+SI++ NLPAELFPQYTT+EY P
Sbjct: 58 TCRAVLNPYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPG 117
Query: 123 GEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGF 182
+ PPVF+FVVDTC+IEEE+ LKSAL QAI LLP+N+LVGLITFGT V VHELG F
Sbjct: 118 SGGAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELG-F 176
Query: 183 GQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFD 242
+ K+YVF+G+K+VSKDQ+LEQL KK +P+ G IAG RDGLSS + RFL+PA +
Sbjct: 177 SEC-SKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASE 235
Query: 243 CEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPST 302
CEFTLNS LEELQKDPWPVPP R RCTG ALS+AA LLGACVPG+GARI+AFVGGP T
Sbjct: 236 CEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCT 295
Query: 303 EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362
EGP AIVSK+LSEPIRSHKDLDKD+AP+Y KAVKFY+ L+KQLV QGHVLD+FAC+LDQV
Sbjct: 296 EGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQV 355
Query: 363 GVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIK 421
GVAE+KVAVE+TGGLVVL++SFGH+VFKDS+RRVF G+ LGLS NG FE+NCSKD+K
Sbjct: 356 GVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLGLSFNGTFEVNCSKDVK 415
Query: 422 VQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQS 481
VQG IGPCASLEKKGP SD +G+G T+AWK+CGLDK TSL + FE+ + Q
Sbjct: 416 VQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSG--QSNPQP 473
Query: 482 TNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541
QF+ QFLT YQH+ GQ RLRVTT++RRWV G S ++L+AGFDQEAAAVVMARL S
Sbjct: 474 PGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGS-SSEELVAGFDQEAAAVVMARLASH 532
Query: 542 KMEIEVIF 549
KME E F
Sbjct: 533 KMETEEEF 540
|
Length = 761 |
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.87 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.63 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.67 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.66 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.65 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.6 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.6 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.6 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.5 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.44 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.39 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.32 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.29 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.28 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.23 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 98.21 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.19 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.16 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.15 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 97.97 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 97.92 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 97.9 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.88 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 97.86 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.82 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.79 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.64 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.61 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.56 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.55 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.53 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.52 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 97.49 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.49 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.37 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.31 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.3 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 97.21 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.18 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 96.85 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 96.82 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 96.58 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 96.24 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 94.66 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 94.27 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 91.08 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 89.75 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 87.99 | |
| KOG2807 | 378 | consensus RNA polymerase II transcription initiati | 85.79 | |
| TIGR00627 | 279 | tfb4 transcription factor tfb4. This family is bas | 84.69 | |
| PF10058 | 54 | DUF2296: Predicted integral membrane metal-binding | 83.64 | |
| PRK00398 | 46 | rpoP DNA-directed RNA polymerase subunit P; Provis | 82.71 | |
| PRK10997 | 487 | yieM hypothetical protein; Provisional | 80.15 |
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-113 Score=964.65 Aligned_cols=545 Identities=68% Similarity=1.150 Sum_probs=489.8
Q ss_pred CCcccccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCcccCCCCceecCceEEEcCCcee
Q 008566 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIW 81 (561)
Q Consensus 2 ~~~~~~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~~~~~RC~~C~ayiNp~~~~~~~~~~w 81 (561)
|||.+.|+.++||+|||+||+++.++++++|||||+|+||++. +++|+++++|+||++|+|||||||+++.++++|
T Consensus 1 ~~~~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~----~~vp~v~~~pvRC~~CraylNPf~~~d~~~~~W 76 (761)
T PLN00162 1 MDFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPL----PELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIW 76 (761)
T ss_pred CchhhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcC----CCCCcCCCCCCccCCCcCEECCceEEecCCCEE
Confidence 7899999999999999999999999999999999999999987 569999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCccCcCCCCCCCCcccCCCCcceEEeCCCCCCCCCCCcEEEEEEEcccchhhHHHHHHHHHHHhhcCCC
Q 008566 82 ICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPD 161 (561)
Q Consensus 82 ~C~~C~~~N~~p~~y~~~~~~~~~pEl~~~~~tvey~~~~~~~~~~~~p~~vFvID~s~~~~~~~~l~~~l~~~l~~l~~ 161 (561)
+||||+..|.+|++|..+++.++||||.|+++||||.+++....+..||+|+||||+|..+++++.++++|+++|+.||+
T Consensus 77 ~C~~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~~~~~~~~pp~fvFvID~s~~~~~l~~lk~sl~~~L~~LP~ 156 (761)
T PLN00162 77 ICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPGSGGAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPE 156 (761)
T ss_pred EccCCCCCCCCchHhcccCccCCChhhcCCceeEEEECCCCCCCCCCCcEEEEEEecchhHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999987777889999998999999999821111226999999999999999999999999999999999
Q ss_pred CceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeech
Q 008566 162 NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAF 241 (561)
Q Consensus 162 ~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (561)
+++|||||||+.||||+++ ... +++++||+|+++++.+++++++++++.+..+.....+.-.++++++..++||+|++
T Consensus 157 ~a~VGlITF~s~V~~~~L~-~~~-~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~ 234 (761)
T PLN00162 157 NALVGLITFGTHVHVHELG-FSE-CSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPAS 234 (761)
T ss_pred CCEEEEEEECCEEEEEEcC-CCC-CcceEEecCCccCCHHHHHHHhccccccccccccccccccccccCCCccceeEEHH
Confidence 9999999999999999998 666 89999999999999999999998765321111000000011234456789999999
Q ss_pred hhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCC
Q 008566 242 DCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHK 321 (561)
Q Consensus 242 ~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~ 321 (561)
||+..|..+|++|++++|++++++|+.||+|+||++|..+|+.+.++.||||++|++||||.|||+|+.+++++++|+|+
T Consensus 235 e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~ 314 (761)
T PLN00162 235 ECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHK 314 (761)
T ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccccCcc
Confidence 99999999999999999988889999999999999999999987778999999999999999999999999999999999
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcCCCCccchHHHHHHHHh-cc
Q 008566 322 DLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFH-SG 400 (561)
Q Consensus 322 ~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~l~~~~~-~~ 400 (561)
+++++++++++++.+||++||.+|+++||+||||+++.+|+|+++|+.|++.|||.+++|++|+.+.|+++|+++|. +.
T Consensus 315 di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r~~ 394 (761)
T PLN00162 315 DLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDG 394 (761)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhcccc
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999995 44
Q ss_pred ccCcCceeeeEEEEEecCCceEEeEEcCccccCCCCCCccCccccCCCCCceEEeCCCCCceEEEEEEEecCCCCccccc
Q 008566 401 DYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQ 480 (561)
Q Consensus 401 ~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~f~~~~~~~~~~~l~ 480 (561)
++++.+||+|+||||||+|++|.++|||++...+++++++|+++|.|+|+.|+++++++++||+|+|++++... ...+.
T Consensus 395 ~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~-~~~~~ 473 (761)
T PLN00162 395 EGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQ-SNPQP 473 (761)
T ss_pred cccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccc-cCCCC
Confidence 44567899999999999999999999999988788888999999999999999999999999999999998621 01122
Q ss_pred CCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhccCccceEEee
Q 008566 481 STNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEIEVIFITLTLN 555 (561)
Q Consensus 481 ~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~~~~~~~~~D~~a~~~llak~a~~~~~~~~~~d~~~~~ 555 (561)
....+||||+++||+.+|+|||||+|+++||+. ..++.+++++||+||++++|||+|+.++++++..|++|..
T Consensus 474 -~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~-~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~l 546 (761)
T PLN00162 474 -PGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVE-GSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWL 546 (761)
T ss_pred -CCceEEEEEEEEEEcCCCCEEEEEEccccCccC-CCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 346799999999999999999999999999432 2378899999999999999999999999999988887743
|
|
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00627 tfb4 transcription factor tfb4 | Back alignment and domain information |
|---|
| >PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [] | Back alignment and domain information |
|---|
| >PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional | Back alignment and domain information |
|---|
| >PRK10997 yieM hypothetical protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 561 | ||||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-134 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 1e-134 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-133 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-109 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-109 | ||
| 2yrc_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 3e-11 | ||
| 2yrd_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 5e-11 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-10 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 2e-10 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 5e-10 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 3e-09 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 3e-06 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 3e-04 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 4e-04 |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
|
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 | Back alignment and structure |
| >pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 473 bits (1218), Expect = e-159
Identities = 238/553 (43%), Positives = 334/553 (60%), Gaps = 23/553 (4%)
Query: 1 MTEFMDL----EAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY 56
MT +++ E +DGVR WNV P ++ EA+ VVPV+A++TP+K P +P + Y
Sbjct: 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQY 60
Query: 57 APLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTT 114
P+ C TCR++LNP VD+ AK+W C FC+QRN FPP YA I++ N PAEL PQ+++
Sbjct: 61 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSS 120
Query: 115 IEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLV 174
IEY +P +F++VVDTC+ +E++ LK ++ ++ LLP +LVGLITFG +V
Sbjct: 121 IEYVVLRG---PQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMV 177
Query: 175 QVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIA 234
QVHELG + I K+YVF+G+KD+S QL E L K
Sbjct: 178 QVHELGC--EGISKSYVFRGTKDLSAKQLQEMLGL----SKVPVTQATRGPQVQQPPPSN 231
Query: 235 RFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARIL 294
RFL P + L +L ELQ+DPWPVP +R R +G ALSIA LL P +GARI+
Sbjct: 232 RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIM 291
Query: 295 AFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDL 354
F+GGP+T+GP +V L PIRS D+DKD+A + K K ++AL+ + GHV+D+
Sbjct: 292 MFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDI 351
Query: 355 FACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFE 413
+ACALDQ G+ E+K TGG +V+ DSF ++FK + +RVF + G E
Sbjct: 352 YACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLE 411
Query: 414 INCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKE 473
I S++IK+ G IGPC SL KGP S+ +G G T WK+CGL T+L + FE+V +
Sbjct: 412 IKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQH 471
Query: 474 IPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAV 533
+ QF+T YQH+ GQ R+RVTT++R W +Q++ A FDQEAAA+
Sbjct: 472 NAP---IPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAI 528
Query: 534 VMARLVSFKMEIE 546
+MARL ++ E E
Sbjct: 529 LMARLAIYRAETE 541
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.63 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.1 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.77 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.45 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.35 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.32 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.28 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.28 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.28 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.27 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.23 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.23 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.2 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 98.16 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.13 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.11 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.05 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.01 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 97.97 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 97.91 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.78 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 97.75 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.7 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.65 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.19 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 97.14 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 95.76 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 95.71 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 95.26 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 94.89 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 94.46 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 94.06 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 93.14 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 92.84 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 88.86 | |
| 2iue_A | 212 | Pactolus I-domain; membrane protein, CD, ITC, limb | 87.05 |
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-110 Score=943.54 Aligned_cols=531 Identities=40% Similarity=0.708 Sum_probs=476.1
Q ss_pred CCcccccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCcccCC--CCceecCceEEEcCCc
Q 008566 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIVDFAAK 79 (561)
Q Consensus 2 ~~~~~~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~~~~~RC~~--C~ayiNp~~~~~~~~~ 79 (561)
|||.++|+++|||+|||++|.+++++++++||||++|+||++. +++|+++++|+||++ |+|||||||+|+.+|+
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 76 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPYNPVVCSGPHCKSILNPYCVIDPRNS 76 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEECSCCCBCCSTTTCCBCCTTSCEETTTT
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC----CCCCcCCCCCCccCCCCCCeEECCceEEeCCCC
Confidence 7888999999999999999999999999999999999999975 578999999999999 9999999999999999
Q ss_pred eeEeCCCCCCCCCCccCcCCCCCCCCcccCCCCcceEEeCCCCCCCCCCCcEEEEEEEcccchhhHHHHHHHHHHHhhcC
Q 008566 80 IWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLL 159 (561)
Q Consensus 80 ~w~C~~C~~~N~~p~~y~~~~~~~~~pEl~~~~~tvey~~~~~~~~~~~~p~~vFvID~s~~~~~~~~l~~~l~~~l~~l 159 (561)
+|+||||++.|++|++|..+...++|||| ++++|||+++++++ .||+|+||||+|.++++++.++++|+++|+.|
T Consensus 77 ~W~C~~C~~~N~~P~~y~~~~~~~~~pEL--~~~tvEy~~p~~~~---~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 77 SWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITNKPVT---VPPIFFFVVDLTSETENLDSLKESIITSLSLL 151 (768)
T ss_dssp EECCTTTCCCCBCCGGGCC---CCCCGGG--TCSEEEEECSCCCC---SCCEEEEEEECCSCHHHHHHHHHHHHHHHHTS
T ss_pred EEEcccCCCCCCCChHHccCCcccCChhh--ccCCEEEECCCCCC---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999866667889999 49999999997544 69999999999999999999999999999999
Q ss_pred CCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHh-ccCCCCCCCCCccccCc-----CCCC-CC-c
Q 008566 160 PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL-NFFIKKPKPSTGVIAGV-----RDGL-SS-D 231 (561)
Q Consensus 160 ~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-----~~~~-~~-~ 231 (561)
|++++|||||||+.||||+++ +.. +++++||+|+++++.+++++++ ++.+. .+|++ +|++ ++ +
T Consensus 152 p~~~~VGlITf~~~V~~y~l~-~~~-~~~~~V~~g~k~~~~~q~~~~l~~l~~~-------~~~~~~~~~~~~~f~p~~~ 222 (768)
T 1m2o_A 152 PPNALIGLITYGNVVQLHDLS-SET-IDRCNVFRGDREYQLEALTEMLTGQKPT-------GPGGAASHLPNAMNKVTPF 222 (768)
T ss_dssp CTTCEEEEEEESSEEEECCCS-SSS-SEEEEEEETTSCCCHHHHHHHHHSCCCC----------------------CCSS
T ss_pred CCCCEEEEEEECCEEEEEECC-CCC-CcceeeecCCccccHHHHHHHHhhcccc-------ccCCccccccccccccccC
Confidence 999999999999999999999 666 8999999999999999999998 76531 01222 2211 11 2
Q ss_pred cccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCcccccC
Q 008566 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK 311 (561)
Q Consensus 232 ~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt~G~G~l~~~ 311 (561)
+.++||+|++||++.|.++|++|++++|++++++++.||+|+||++|..+|+.+.++.||||++|++|+||.|||+|+.+
T Consensus 223 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r 302 (768)
T 1m2o_A 223 SLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNS 302 (768)
T ss_dssp SGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCS
T ss_pred CccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccc
Confidence 36899999999999999999999998888888899999999999999999997777899999999999999999999999
Q ss_pred CCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcCCCCccchHH
Q 008566 312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKD 391 (561)
Q Consensus 312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~ 391 (561)
+.++++|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+.|.+
T Consensus 303 ~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~ 382 (768)
T 1m2o_A 303 ELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQ 382 (768)
T ss_dssp BTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHH
T ss_pred ccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-ccccCcCceeeeEEEEEecCCceEEeEEcCccccCC-CCCCccCccccCCCCCceEEeCCCCCceEEEEEEE
Q 008566 392 SVRRVFH-SGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEK-KGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEI 469 (561)
Q Consensus 392 ~l~~~~~-~~~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~-~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~f~~ 469 (561)
+++++|+ +..+++++||+|+||||||+|++|++++||++..++ +++++||+++|.|+++.|++++++++++|+|+|++
T Consensus 383 ~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~ 462 (768)
T 1m2o_A 383 SYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEI 462 (768)
T ss_dssp HHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEE
T ss_pred HHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEe
Confidence 9999994 444456799999999999999999999999998776 78899999999999999999999999999999999
Q ss_pred ecCCCCcc-----ccc-CCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCC-HHHHHhccCHHHHHHHHHHHHHHH
Q 008566 470 VKKEIPDA-----TLQ-STNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGS-VQDLIAGFDQEAAAVVMARLVSFK 542 (561)
Q Consensus 470 ~~~~~~~~-----~l~-~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~-~~~~~~~~D~~a~~~llak~a~~~ 542 (561)
++...... +++ +....+|||+|++||+.+|+|||||||+++| +++ + +.++|+++|+||++++|||+|+.+
T Consensus 463 ~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~-~t~--~~~~~v~~~~Dqea~~~llar~av~~ 539 (768)
T 1m2o_A 463 ANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQ-LLP--FGTPAIAASFDQEAAAVLMARIAVHK 539 (768)
T ss_dssp CCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEE-EEC--TTCHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeeccc-ccC--ccHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 98721100 011 0346899999999999999999999999999 776 5 899999999999999999999999
Q ss_pred hhccCccceEE
Q 008566 543 MEIEVIFITLT 553 (561)
Q Consensus 543 ~~~~~~~d~~~ 553 (561)
+++++..|++|
T Consensus 540 ~~~~~~~d~r~ 550 (768)
T 1m2o_A 540 AETDDGADVIR 550 (768)
T ss_dssp TTSSCHHHHHH
T ss_pred HhcCCHHHHHH
Confidence 99998888775
|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 561 | ||||
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 9e-94 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 2e-55 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 4e-48 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 4e-15 | |
| d2qtva5 | 75 | g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar | 6e-29 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 4e-19 | |
| d2qtva1 | 103 | a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar | 6e-05 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 0.002 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 285 bits (731), Expect = 9e-94
Identities = 106/271 (39%), Positives = 160/271 (59%), Gaps = 3/271 (1%)
Query: 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIP 187
VPP+F FVVD E + LK ++ ++ LLP N+L+GLIT+G +VQ+H+L I
Sbjct: 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSET--ID 58
Query: 188 KTYVFKGSKDVSKDQLLEQLNFF-IKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFT 246
+ VF+G ++ + L E L P + + + ++ ++ RF +P EF
Sbjct: 59 RCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFK 118
Query: 247 LNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPA 306
LN +LE L D W VP R R TG+AL+IA+ LL C ARI+ F GP T P
Sbjct: 119 LNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPG 178
Query: 307 AIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAE 366
IV+ L +P+RSH D+D D A HY KA KFY+ +++++ GH +D+FA DQ+G++E
Sbjct: 179 LIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSE 238
Query: 367 LKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF 397
+K + TGG+++L+D+F A+FK S R+F
Sbjct: 239 MKQLTDSTGGVLLLTDAFSTAIFKQSYLRLF 269
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.87 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.86 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.84 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.78 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.42 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.23 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 98.08 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 98.05 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 97.99 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.85 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 97.76 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.64 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.61 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.59 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.57 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.28 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 97.0 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 96.96 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 95.61 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.51 | |
| d2j9ub1 | 47 | Vacuolar protein-sorting-associated protein 36, VP | 80.59 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.9e-55 Score=435.66 Aligned_cols=267 Identities=39% Similarity=0.715 Sum_probs=239.4
Q ss_pred CcEEEEEEEcccchhhHHHHHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHhc
Q 008566 129 PPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLN 208 (561)
Q Consensus 129 ~p~~vFvID~s~~~~~~~~l~~~l~~~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~ 208 (561)
||+||||||+|.++++++.++++|+++|+.||++++|||||||+.||||+++ +.. .++.+|++|+++|+.++++++++
T Consensus 2 Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~-~~~-~~~~~v~~g~~~~~~~~~~~~~~ 79 (271)
T d2qtva3 2 PPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLS-SET-IDRCNVFRGDREYQLEALTEMLT 79 (271)
T ss_dssp CCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECS-CSS-CCEEEEEESSSCCCHHHHHHHHH
T ss_pred CCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECC-CCc-CccceeccCccccCHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999998 665 78999999999999999999887
Q ss_pred cCCC--CCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccC
Q 008566 209 FFIK--KPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACV 286 (561)
Q Consensus 209 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~ 286 (561)
.... ...+++.++.++++ ..++..++||+|++++++.|.++|++|++.+|+.+++.++.||+|+||.+|..+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~ 158 (271)
T d2qtva3 80 GQKPTGPGGAASHLPNAMNK-VTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCY 158 (271)
T ss_dssp CCC------------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccc-ccCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhhc
Confidence 5421 11233445555554 44567789999999999999999999999988888899999999999999999998777
Q ss_pred CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhc
Q 008566 287 PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAE 366 (561)
Q Consensus 287 ~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~ 366 (561)
.+.||||++|++|+||.|||+|+.+++++++|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+++|+++
T Consensus 159 ~~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~dl~~ 238 (271)
T d2qtva3 159 KNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSE 238 (271)
T ss_dssp TTSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCSHHH
T ss_pred cCCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCChHH
Confidence 78999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred chhhhhccCcEEEEcCCCCccchHHHHHHHHh
Q 008566 367 LKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFH 398 (561)
Q Consensus 367 l~~l~~~TGG~v~~y~~f~~~~~~~~l~~~~~ 398 (561)
|++|++.|||.+++|++|+.+.|+++|+|+|.
T Consensus 239 l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~ 270 (271)
T d2qtva3 239 MKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFA 270 (271)
T ss_dssp HTHHHHTTTCCEEEESCTTSHHHHHHHHHTTC
T ss_pred HHhHHhhCCceEEEeCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999884
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
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