Citrus Sinensis ID: 008571

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITTFSNADTEMKEAATDTSGKKSKKKKSKSEIAVDGEPMSVDKVAATNGDASEEPKSEKTKKKKDKRKLDEEPAADLNGVSGVDAPEDGTAKKKKKKKKAEDNEEDVQAKSEKKKKKKSKSEDGDE
ccEEEEEccccEEEEEEEcccccccccHHHHHHHHHcHHHHcccEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccEEEEccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccHHHcccccHHHHccccccHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHccccccccccc
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGK***GQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIE*****VI*****************************************************************************************************************************
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MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITTFSNADTEMKEAATDTSGKKSKKKKSKSEIAVDGEPMSVDKVAATNGDASEEPKSEKTKKKKDKRKLDEEPAADLNGVSGVDAPEDGxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSKSEDGDE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Uncharacterized NOP5 family protein K07C5.4 probableQ21276
Nucleolar protein 56 Involved in the early to middle stages of 60S ribosomal subunit biogenesis.probableQ9D6Z1
Nucleolar protein 56 Involved in the early to middle stages of 60S ribosomal subunit biogenesis.probableQ3SZ63

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3ICX, chain A
Confidence level:very confident
Coverage over the Query: 166-332,352-415
View the alignment between query and template
View the model in PyMOL
Template: 1NT2, chain B
Confidence level:very confident
Coverage over the Query: 141-201,253-335,351-412
View the alignment between query and template
View the model in PyMOL
Template: 2NNW, chain A
Confidence level:very confident
Coverage over the Query: 5-22,46-335,349-411
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
1b6a, chain A probable Alignment | Template Structure
3vkg, chain A probable Alignment | Template Structure