Citrus Sinensis ID: 008571

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITTFSNADTEMKEAATDTSGKKSKKKKSKSEIAVDGEPMSVDKVAATNGDASEEPKSEKTKKKKDKRKLDEEPAADLNGVSGVDAPEDGTAKKKKKKKKAEDNEEDVQAKSEKKKKKKSKSEDGDE
ccEEEEEccccEEEEEEEcccccccccHHHHHHHHHcHHHHcccEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccEEEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccHHHcccccHHHHccccccHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHccccccccccc
ccEEEEEEccccHEEEEEccHHHHHHHHHHHHHHHccHHHHccEEEEEcccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHccHHHccHccHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHccccccHHHccHHcccccccccccHHccccHHccccHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccHccccccccccc
MALYLLYETASGYSLFLAHgldqigqnTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLElnlpkvkegkkakfslgvsepkigshifeetkipcqsnEFVLELLRGVRLHFDRFikdlkpgdlekaqlglghsysrakVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEdkskltddMVPALTDILGDEDKAKEIVEAGkasmgqdlsaVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLIShagsltnlakcpsstlQILGAEKALFRALKtrgntpkygliFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFydkgvaprknIDVMKAAIESTENNVITTFSNADTEMKEaatdtsgkkskkkkskseiavdgepmsvdkvaatngdaseepksektkkkkdkrkldeepaadlngvsgvdapedgtakkKKKKKKAEDNEEDVQAKSEkkkkkksksedgde
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVkegkkakfslgvsepKIGSHifeetkipcqSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAqlglghsysraKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLiedkskltddMVPALtdilgdedKAKEIVEAGkasmgqdlsaVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTrgntpkyglifhsSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDfydkgvaprkNIDVMKAAiestennvittfsnadtemkeaatdtsgkkskkkkskseiavdgepmsvdkvaatngdaseepksektkkkkdkrkldeepaadlngvsgvdapedgtakkkkkkkkaedneedvqaksekkkkkksksedgde
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITTFSNADTEMKEAATDTSGkkskkkksksEIAVDGEPMSVDKVAATNGDAseepksektkkkkdkrkldeepAADLNGVSGVDAPEDGTAkkkkkkkkAEDNEEDVQAksekkkkkkskseDGDE
**LYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGD******IV*******GQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIE*****VI*****************************************************************************************************************************
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLG****************NMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGK*****DLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQ******************PKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD********************************************************************************************************************************************************
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITTFSNADT************************VDGEPMSVDKVAA************************EEPAADLNGVSGVDAP****************************************
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITT***************************************************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITTFSNADTEMKEAATDTSGKKSKKKKSKSEIAVDGEPMSVDKVAATNGDASEEPKSEKTKKKKDKRKLDEEPAADLNGVSGVDAPEDGxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSKSEDGDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query561 2.2.26 [Sep-21-2011]
O94514497 Nucleolar protein 56 OS=S yes no 0.771 0.871 0.617 1e-158
O00567594 Nucleolar protein 56 OS=H yes no 0.759 0.717 0.595 1e-151
Q5RA29594 Nucleolar protein 56 OS=P yes no 0.759 0.717 0.590 1e-150
Q95K50594 Nucleolar protein 56 OS=M N/A no 0.759 0.717 0.593 1e-148
Q9D6Z1580 Nucleolar protein 56 OS=M yes no 0.746 0.722 0.602 1e-147
Q3SZ63596 Nucleolar protein 56 OS=B yes no 0.759 0.714 0.590 1e-147
Q12460504 Nucleolar protein 56 OS=S yes no 0.757 0.843 0.543 1e-134
Q54MT2540 Nucleolar protein 56 OS=D yes no 0.798 0.829 0.505 1e-131
Q21276486 Uncharacterized NOP5 fami yes no 0.754 0.870 0.526 1e-129
Q9P7S7508 Nucleolar protein 58 OS=S no no 0.761 0.840 0.42 2e-95
>sp|O94514|NOP56_SCHPO Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=3 SV=1 Back     alignment and function desciption
 Score =  560 bits (1443), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/437 (61%), Positives = 340/437 (77%), Gaps = 4/437 (0%)

Query: 1   MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDAL 60
           MA YLLYE+A+GYSLF   G DQI   T+ V+ S+ D+++FGKVVQL +F PF++A  AL
Sbjct: 1   MADYLLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHAL 60

Query: 61  NQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEET-KIPCQSNE 119
              N +SEG++ + L+NFLELNLPK    KK K SLGV +  + + I  E   I C ++E
Sbjct: 61  ENANDISEGVLNDFLKNFLELNLPKA--SKKKKVSLGVQDKNLATSIKSEIDAIECDTSE 118

Query: 120 FVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLD 179
              +LLRG+R H D+ +K L PGD E+AQLGLGHSYSRAKVKFNVNR DNM+IQAI +LD
Sbjct: 119 LTQDLLRGIRFHGDKLLKQLSPGDFERAQLGLGHSYSRAKVKFNVNRNDNMIIQAIAILD 178

Query: 180 TLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILG 239
            LDKDIN+F+MR++EWYSWHFPEL KIV DNY YA +V L+ DK+ + D+M+  L  ++ 
Sbjct: 179 QLDKDINTFAMRMKEWYSWHFPELSKIVGDNYKYAVIVTLVGDKTTINDEMLHDLAAVVD 238

Query: 240 DE-DKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPN 298
           D+ D A+ I+ AGK SMGQD+S +DL N+  FA+RV+ LS YRK+L+ YLV KMN +APN
Sbjct: 239 DDKDIAQSIINAGKVSMGQDISEIDLENILSFAERVIKLSNYRKQLHNYLVQKMNVVAPN 298

Query: 299 LASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSS 358
           LA LIGE+VGARLISHAGSLTNL+KCP+ST+QILGAEKALFRALKTRGNTPKYG+I+HSS
Sbjct: 299 LAELIGEMVGARLISHAGSLTNLSKCPASTVQILGAEKALFRALKTRGNTPKYGIIYHSS 358

Query: 359 FIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPR 418
           FIG+A A+NKGR++R+LANKCSIASRID F++  TT FG+ LR QVEERL+F+D GVAP 
Sbjct: 359 FIGKAGAKNKGRISRFLANKCSIASRIDNFSDAPTTAFGQVLRRQVEERLNFFDTGVAPT 418

Query: 419 KNIDVMKAAIESTENNV 435
           +N   M  A E   ++V
Sbjct: 419 RNSIAMAEAYEKALSSV 435
Required for 60S ribosomal subunit synthesis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|O00567|NOP56_HUMAN Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4 Back     alignment and function description
>sp|Q5RA29|NOP56_PONAB Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1 Back     alignment and function description
>sp|Q95K50|NOP56_MACFA Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1 Back     alignment and function description
>sp|Q9D6Z1|NOP56_MOUSE Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2 Back     alignment and function description
>sp|Q3SZ63|NOP56_BOVIN Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1 Back     alignment and function description
>sp|Q12460|NOP56_YEAST Nucleolar protein 56 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP56 PE=1 SV=1 Back     alignment and function description
>sp|Q54MT2|NOP56_DICDI Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1 Back     alignment and function description
>sp|Q21276|YZVL_CAEEL Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis elegans GN=K07C5.4 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7S7|NOP58_SCHPO Nucleolar protein 58 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop58 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
225456270558 PREDICTED: nucleolar protein 56-like [Vi 0.980 0.985 0.830 0.0
255540297558 nucleolar protein nop56, putative [Ricin 0.964 0.969 0.826 0.0
297734387470 unnamed protein product [Vitis vinifera] 0.773 0.923 0.914 0.0
224121958540 predicted protein [Populus trichocarpa] 0.771 0.801 0.909 0.0
224136093500 predicted protein [Populus trichocarpa] 0.775 0.87 0.896 0.0
449517593552 PREDICTED: LOW QUALITY PROTEIN: nucleola 0.848 0.862 0.835 0.0
449440570552 PREDICTED: nucleolar protein 56-like [Cu 0.848 0.862 0.835 0.0
356563188549 PREDICTED: nucleolar protein 56-like [Gl 0.921 0.941 0.791 0.0
356513997550 PREDICTED: nucleolar protein 56-like iso 0.912 0.930 0.775 0.0
356513999556 PREDICTED: nucleolar protein 56-like iso 0.912 0.920 0.766 0.0
>gi|225456270|ref|XP_002283518.1| PREDICTED: nucleolar protein 56-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  876 bits (2264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/568 (83%), Positives = 511/568 (89%), Gaps = 18/568 (3%)

Query: 1   MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDAL 60
           MALYLLYE+ASGY+LFLAHGLD+IGQNTEAVRSS+SD+NRFGKVV+L AFHPFESALDAL
Sbjct: 1   MALYLLYESASGYALFLAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDAL 60

Query: 61  NQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEF 120
           NQCNSVSEGLMT+ELR+FLELNLPKVKEGKK KFSLG +EPKIGSHIFE+TKIPCQSNEF
Sbjct: 61  NQCNSVSEGLMTDELRSFLELNLPKVKEGKKPKFSLGTAEPKIGSHIFEDTKIPCQSNEF 120

Query: 121 VLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDT 180
           VLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDT
Sbjct: 121 VLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDT 180

Query: 181 LDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGD 240
           LDKDINSFSMRVREWYSWHFPELVKIVNDNYLYA+V K +E+K +L++D +P LT+ILGD
Sbjct: 181 LDKDINSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFVENKLELSEDKIPGLTEILGD 240

Query: 241 EDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLA 300
           EDKAKEIVEA KASMGQDLS +DL+NVQ FAQRVMDLSEYRKKLYEYLVTKMNDIAPNLA
Sbjct: 241 EDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLA 300

Query: 301 SLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFI 360
           SLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFI
Sbjct: 301 SLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFI 360

Query: 361 GRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKN 420
           GRASARNKGRMARYLANKCSIASRIDCFAE NTT+FGEKLREQVEERL+FYDKG+APRKN
Sbjct: 361 GRASARNKGRMARYLANKCSIASRIDCFAESNTTVFGEKLREQVEERLEFYDKGIAPRKN 420

Query: 421 IDVMKAAIESTENNVITTFSNADTEMKEAATDTSGKKSKKKKSKSEIAVDGEPMSVDK-V 479
           IDVMKAAIE T+NN        DTE K A T+ S KKSKKKKSK E A DGEPM  DK  
Sbjct: 421 IDVMKAAIEITQNN--------DTEDK-ATTEPSAKKSKKKKSKVEAAEDGEPMVEDKPT 471

Query: 480 AATNGDASEEPKSEKTKKKKDKRKLDEEPAADLN------GVSGVDAPEDGTAKKKKKKK 533
           AATNGDASEEPK+EK KKK+ ++ ++EE    +       GV+GV+  EDGTAKKKKKKK
Sbjct: 472 AATNGDASEEPKTEKKKKKEKRKLVEEEEEEQVQAVENSIGVNGVNT-EDGTAKKKKKKK 530

Query: 534 KAEDNEEDVQAKSE-KKKKKKSKSEDGD 560
             +++ E + A SE KKKKKKS+SED D
Sbjct: 531 SKDEDGERLAAVSEGKKKKKKSRSEDDD 558

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540297|ref|XP_002511213.1| nucleolar protein nop56, putative [Ricinus communis] gi|223550328|gb|EEF51815.1| nucleolar protein nop56, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297734387|emb|CBI15634.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121958|ref|XP_002318715.1| predicted protein [Populus trichocarpa] gi|222859388|gb|EEE96935.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224136093|ref|XP_002322238.1| predicted protein [Populus trichocarpa] gi|222869234|gb|EEF06365.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449517593|ref|XP_004165830.1| PREDICTED: LOW QUALITY PROTEIN: nucleolar protein 56-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449440570|ref|XP_004138057.1| PREDICTED: nucleolar protein 56-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563188|ref|XP_003549846.1| PREDICTED: nucleolar protein 56-like [Glycine max] Back     alignment and taxonomy information
>gi|356513997|ref|XP_003525694.1| PREDICTED: nucleolar protein 56-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356513999|ref|XP_003525695.1| PREDICTED: nucleolar protein 56-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
TAIR|locus:2205270522 NOP56 "homolog of nucleolar pr 0.766 0.823 0.853 1.5e-200
TAIR|locus:2087755499 AT3G12860 [Arabidopsis thalian 0.770 0.865 0.844 1.3e-196
POMBASE|SPBC646.10c497 SPBC646.10c "U3 snoRNP protein 0.805 0.909 0.599 2.1e-141
ZFIN|ZDB-GENE-040109-1548 nop56 "NOP56 ribonucleoprotein 0.754 0.771 0.598 1.6e-134
UNIPROTKB|O00567594 NOP56 "Nucleolar protein 56" [ 0.759 0.717 0.595 2.7e-132
FB|FBgn0038964496 Nop56 "Nop56" [Drosophila mela 0.802 0.907 0.563 7.1e-132
MGI|MGI:1914384580 Nop56 "NOP56 ribonucleoprotein 0.759 0.734 0.597 9.1e-132
UNIPROTKB|Q4KLK7588 Nol5a "RCG26515, isoform CRA_c 0.759 0.724 0.595 9.1e-132
UNIPROTKB|F1MW06596 NOP56 "Nucleolar protein 56" [ 0.759 0.714 0.590 1.5e-131
UNIPROTKB|E2QU53597 NOP56 "Uncharacterized protein 0.759 0.713 0.590 2.4e-131
TAIR|locus:2205270 NOP56 "homolog of nucleolar protein NOP56" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1941 (688.3 bits), Expect = 1.5e-200, P = 1.5e-200
 Identities = 367/430 (85%), Positives = 411/430 (95%)

Query:     1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDAL 60
             MA+Y++YE++SGY LF  HGLD+IGQNTEAVR+S+SD++RFG+VVQLTAFHPFESALDAL
Sbjct:     1 MAMYVIYESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPFESALDAL 60

Query:    61 NQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEF 120
             NQ N+VSEG+MT+ELR+FLELNLPKVKEGKK KFSLG++EPK+GSHIFE TKIPCQSNEF
Sbjct:    61 NQVNAVSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEF 120

Query:   121 VLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDT 180
             VLELLRGVR HFDRFIKDLKPGDLEK+QLGL HSYSRAKVKFNVNRVDNMVIQAIF+LDT
Sbjct:   121 VLELLRGVRQHFDRFIKDLKPGDLEKSQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDT 180

Query:   181 LDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGD 240
             LDKDINSF+MRVREWYSWHFPELVKIVNDNYLYARV K+I+DKSKLT+D +P LT++LGD
Sbjct:   181 LDKDINSFAMRVREWYSWHFPELVKIVNDNYLYARVSKMIDDKSKLTEDHIPMLTEVLGD 240

Query:   241 EDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLA 300
             EDKAKE++EAGKASMG DLS +DL+NVQ FAQ+VMDL++YRKKLY+YLVTKM+DIAPNLA
Sbjct:   241 EDKAKEVIEAGKASMGSDLSPLDLINVQTFAQKVMDLADYRKKLYDYLVTKMSDIAPNLA 300

Query:   301 SLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFI 360
             +LIGE+VGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFI
Sbjct:   301 ALIGEMVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFI 360

Query:   361 GRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKN 420
             GRASA+NKGR+ARYLANKCSIASRIDCFA+  TT FGEKLREQVEERL+FYDKGVAPRKN
Sbjct:   361 GRASAKNKGRIARYLANKCSIASRIDCFADGATTAFGEKLREQVEERLEFYDKGVAPRKN 420

Query:   421 IDVMKAAIES 430
             +DVMK  IE+
Sbjct:   421 VDVMKEVIEN 430
GO:0005634 "nucleus" evidence=ISM
GO:0005730 "nucleolus" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2087755 AT3G12860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC646.10c SPBC646.10c "U3 snoRNP protein Nop56 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040109-1 nop56 "NOP56 ribonucleoprotein homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O00567 NOP56 "Nucleolar protein 56" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0038964 Nop56 "Nop56" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1914384 Nop56 "NOP56 ribonucleoprotein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLK7 Nol5a "RCG26515, isoform CRA_c" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MW06 NOP56 "Nucleolar protein 56" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QU53 NOP56 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54MT2NOP56_DICDINo assigned EC number0.50540.79850.8296yesno
O00567NOP56_HUMANNo assigned EC number0.59530.75930.7171yesno
Q21276YZVL_CAEELNo assigned EC number0.52660.75400.8703yesno
Q5RA29NOP56_PONABNo assigned EC number0.59060.75930.7171yesno
O94514NOP56_SCHPONo assigned EC number0.61780.77180.8712yesno
Q12460NOP56_YEASTNo assigned EC number0.54310.75750.8432yesno
Q9D6Z1NOP56_MOUSENo assigned EC number0.60280.74680.7224yesno
Q3SZ63NOP56_BOVINNo assigned EC number0.59060.75930.7147yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
COG1498395 COG1498, SIK1, Protein implicated in ribosomal bio 1e-124
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 7e-75
pfam01798149 pfam01798, Nop, Putative snoRNA binding domain 5e-72
smart0093152 smart00931, NOSIC, NOSIC (NUC001) domain 5e-26
pfam0806052 pfam08060, NOSIC, NOSIC (NUC001) domain 1e-25
pfam0815667 pfam08156, NOP5NT, NOP5NT (NUC127) domain 2e-17
pfam10278178 pfam10278, Med19, Mediator of RNA pol II transcrip 2e-05
pfam04747 517 pfam04747, DUF612, Protein of unknown function, DU 4e-05
PLN02967 581 PLN02967, PLN02967, kinase 4e-04
pfam04615 728 pfam04615, Utp14, Utp14 protein 0.001
PTZ00372 413 PTZ00372, PTZ00372, endonuclease 4-like protein; P 0.002
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  370 bits (951), Expect = e-124
 Identities = 152/369 (41%), Positives = 220/369 (59%), Gaps = 14/369 (3%)

Query: 46  QLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGS 105
            L  F PF S  DAL +   +SEG +++ L   LEL L +     + K  L V + K+  
Sbjct: 2   SLVDFEPFPSDADALEEELLISEGGVSSALEVNLELELIE----GEKKLELVVCDTKL-- 55

Query: 106 HIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVN 165
                       +E   +L           +      D  +  LGLGH  SR KV+  V+
Sbjct: 56  --GNADSAFEIPSEVGEDLRENAEEALGE-LSSSDEDDYYRMLLGLGHELSRIKVREEVD 112

Query: 166 RVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSK 225
           + D ++IQAI  LD +DK+IN  +MR+REWY WHFPEL  +V DN  YA++V  + ++  
Sbjct: 113 KEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGNREN 172

Query: 226 LTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLY 285
           +  + +  L   L D   A +I EA K SMG DLS  D+ N++  A+ +++L E R++L 
Sbjct: 173 INKESLKDLGFALPD--IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLE 230

Query: 286 EYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTR 345
           EY+ +KM++IAPNL +L+G V+GARLISHAG LT LAK P+ST+Q+LGAEKALFRALKT 
Sbjct: 231 EYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALKTG 290

Query: 346 GNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVE 405
             TPKYG+I+ S  I ++    +G++AR LA K +IA+RID F+ +     G  LRE++E
Sbjct: 291 AKTPKYGVIYQSPLIQKSPPWQRGKIARALAAKLAIAARIDAFSGEPD---GISLREELE 347

Query: 406 ERLDFYDKG 414
           +R++   + 
Sbjct: 348 KRIEKLKEK 356

Length = 395
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain Back     alignment and domain information
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|219731 pfam08156, NOP5NT, NOP5NT (NUC127) domain Back     alignment and domain information
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19 Back     alignment and domain information
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612 Back     alignment and domain information
>gnl|CDD|215521 PLN02967, PLN02967, kinase Back     alignment and domain information
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein Back     alignment and domain information
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 561
KOG2573498 consensus Ribosome biogenesis protein - Nop56p/Sik 100.0
KOG2572498 consensus Ribosome biogenesis protein - Nop58p/Nop 100.0
PRK14552414 C/D box methylation guide ribonucleoprotein comple 100.0
COG1498395 SIK1 Protein implicated in ribosomal biogenesis, N 100.0
KOG2574492 consensus mRNA splicing factor PRP31 [RNA processi 100.0
PF01798150 Nop: Putative snoRNA binding domain; InterPro: IPR 100.0
PF0806053 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 99.85
PF0815667 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR01297 99.79
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-150  Score=1154.19  Aligned_cols=452  Identities=67%  Similarity=1.044  Sum_probs=433.0

Q ss_pred             CccEEeecCcceeeeeeeccccccccchHHHHHHhhcHhhhccceEeeccccCCCHHHHHHHHhhhhccCCCHHHHHHHH
Q 008571            1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLE   80 (561)
Q Consensus         1 m~~~vLfEtaaGYALFkv~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~   80 (561)
                      |++|||||+|+||+||.+++.|+|+..+++|+.++.|+.+|+++|+|.+|.||+++.+||||+|+|++|.+|++|++||+
T Consensus         1 ~~~~ll~E~a~GY~lf~~~~~dei~~~~~~v~~s~~D~~kf~~vv~l~sf~pFk~a~~ALen~n~iSeG~~~edLr~fLe   80 (498)
T KOG2573|consen    1 MMEYLLFESATGYGLFKVKEQDEIGLHLKEVRSSVDDLSKFTQVVQLASFAPFKGAADALENANAISEGVVHEDLRSFLE   80 (498)
T ss_pred             CcceEEEeccCceeEEEEechhHhhhhhHHHHHHHHhHHHHHhHhhhhccCCcccHHHHHHhccccccccccHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCcccccccCCceEEEecChhhhhhhhhhcc-cccccChhHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHh
Q 008571           81 LNLPKVKEGKKAKFSLGVSEPKIGSHIFEETK-IPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAK  159 (561)
Q Consensus        81 ~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lg-i~c~~~~~v~EllRgIR~~~~kll~~l~~~d~~k~~lgLaHs~SR~K  159 (561)
                      .|+|++   |+.+.+|||+|++||.+|++.++ |+|++++.|+|||||+|.||++|+++|++.|+.++||||||+|||+|
T Consensus        81 ~nlpK~---kkkk~sLgi~d~kLg~~i~E~~~~i~c~~~~~~~ellRGvR~hf~kl~K~L~~~d~~kaqLGLghsYSRaK  157 (498)
T KOG2573|consen   81 LNLPKV---KKKKVSLGIGDSKLGISIKEAFPKIPCQSNEVVQELLRGVRKHFDKLMKGLDPGDLEKAQLGLGHSYSRAK  157 (498)
T ss_pred             hhChhh---hcCceeeccCcchhhhHHHhhccCcccccchhHHHHHHHHHHHHHHHHccCCCccHHHHHhcccchhhhhh
Confidence            999974   56679999999999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             hhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhhcC
Q 008571          160 VKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILG  239 (561)
Q Consensus       160 vk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~il~  239 (561)
                      |+||++|+|+||||+|.||||||+|||+|+||||||||||||||.+||+||+.|+++|++|+++..++++.+.++.+.|+
T Consensus       158 VkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFPEL~kiv~DNy~ya~~~~~i~dk~~l~ed~~~~~~e~l~  237 (498)
T KOG2573|consen  158 VKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFPELVKIVPDNYKYAKVVKFIVDKEKLNEDGLHELLEDLG  237 (498)
T ss_pred             eeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccHHHHHhccchHHHHHHHHHHhchhhccccchhHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888887


Q ss_pred             -ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCc
Q 008571          240 -DEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSL  318 (561)
Q Consensus       240 -~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL  318 (561)
                       +.+.+++|++|+++|||++||+.||.||..||++|.+|.+||++|.+||.++|+.|||||++|||+.||||||||||||
T Consensus       238 ~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsL  317 (498)
T KOG2573|consen  238 VDSEKAQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEYRKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSL  317 (498)
T ss_pred             CcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhcccc
Confidence             5666999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhccCCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHH
Q 008571          319 TNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGE  398 (561)
Q Consensus       319 ~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~  398 (561)
                      +||||+||||+|||||||||||+|||++||||||+||||+||++|..+++|||+||||+|||||+|||||++.|++.||+
T Consensus       318 tNLaK~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfigrA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe  397 (498)
T KOG2573|consen  318 TNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGE  397 (498)
T ss_pred             chhhhCcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchhhhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhhccccccccCCcchhhhhhcccccccchhh
Q 008571          399 KLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITTFSNADTEMKEAATDTSGKKSKK  460 (561)
Q Consensus       399 ~lr~~ie~rl~~l~~~~~p~kn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (561)
                      .||+|||+||++|++|..|++|++||++|++.+..     ++++.+...+...++.+.++.+
T Consensus       398 ~Lr~qVEeRL~fy~tg~~p~kn~~vmkea~e~~~~-----~~~~~~~e~e~~~~e~~ek~~e  454 (498)
T KOG2573|consen  398 KLREQVEERLEFYETGEAPRKNSDVMKEAMEAYNG-----ISRDSAPEDEASAKEKPEKDEE  454 (498)
T ss_pred             HHHHHHHHHHHhhhcCCccchhhHHHHHHHHHhcc-----cccccchhhhhhhhhhhhhhhh
Confidence            99999999999999999999999999999999874     5666665555555444444433

>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification] Back     alignment and domain information
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins Back     alignment and domain information
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [] Back     alignment and domain information
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
3id5_A388 Crystal Structure Of Sulfolobus Solfataricus CD RNP 6e-49
2nnw_A376 Alternative Conformations Of Nop56/58-fibrillarin C 2e-47
3nmu_A379 Crystal Structure Of Substrate-Bound Halfmer Box CD 2e-47
3nvk_A376 Structural Basis For Substrate Placement By An Arch 2e-47
3icx_A255 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 4e-47
3nvm_A371 Structural Basis For Substrate Placement By An Arch 3e-44
3gqu_A169 Pyrococcus Horikoshii Nop5 Rna Binding Domain Lengt 3e-25
2ozb_B260 Structure Of A Human Prp31-15.5k-U4 Snrna Complex L 2e-24
3siu_B254 Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Com 2e-24
3id6_A268 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 7e-21
1nt2_B258 Crystal Structure Of FibrillarinNOP5P COMPLEX Lengt 7e-15
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 388 Back     alignment and structure 
Iteration: 1

 Score =  191 bits (486), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 111/259 (42%), Positives = 168/259 (64%), Gaps = 6/259 (2%)
Query: 151 LGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDN 210
           L   Y+R K++    + D + IQA+  +D +DK IN FS R+REWYS HFPEL K++ D+
Sbjct: 120 LSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDH 179
Query: 211 YLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMF 270
             YA +V    D+  LT D   +L ++  +E +   I++A K S+G D+S  DL  ++M 
Sbjct: 180 EEYATIVSRFGDRGFLTID---SLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMI 236
Query: 271 AQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQ 330
           A  ++DL   R+ L  YL   M ++APN+ +L+G  +GARL+S AGSL  LAK P+ST+Q
Sbjct: 237 ANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQ 296
Query: 331 ILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE 390
           +LGAEKALFRAL++ G  PK+G+IF    I  +    +G++AR LA K +IA+R+D F+ 
Sbjct: 297 VLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSG 356
Query: 391 KNTTIFGEKLREQVEERLD 409
           +     G++L EQ+++R+D
Sbjct: 357 R---FIGDQLNEQLKKRID 372
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex And Implication For Induced-fit Assenly Of Box C/d Rnps Length = 376 Back     alignment and structure
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP Length = 379 Back     alignment and structure
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 376 Back     alignment and structure
>pdb|3ICX|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (135-380) Length = 255 Back     alignment and structure
>pdb|3NVM|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 371 Back     alignment and structure
>pdb|3GQU|A Chain A, Pyrococcus Horikoshii Nop5 Rna Binding Domain Length = 169 Back     alignment and structure
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex Length = 260 Back     alignment and structure
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex, Monomeric Form Length = 254 Back     alignment and structure
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262) And Fibrillarin Complex Length = 268 Back     alignment and structure
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 1e-114
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 1e-103
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 1e-93
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 3e-92
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 1e-70
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 2e-61
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 3e-10
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 2e-58
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1b6a_A 478 Methionine aminopeptidase; angiogenesis inhibitor; 4e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 4e-04
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Length = 376 Back     alignment and structure
 Score =  343 bits (880), Expect = e-114
 Identities = 113/376 (30%), Positives = 189/376 (50%), Gaps = 20/376 (5%)

Query: 34  SISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAK 93
           ++  +  F +   L     F    + +   + + +G +T +L   L     K  +     
Sbjct: 18  NVRGIYAFDENGNLIEKRYFTDKPEKV--LDQLLKGEITKDLEELLNSLKEKGYD----- 70

Query: 94  FSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGH 153
                  P++     E             E             ++    +  +    +G 
Sbjct: 71  -EFVFEHPELSRRAKEL------GFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGV 123

Query: 154 SYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLY 213
           + +R +++      D MVIQAI  LD +DK IN    R+REWYS HFPEL +++  +  Y
Sbjct: 124 ALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQY 183

Query: 214 ARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQR 273
              VK +  +  + ++    L ++   E+K K+I+EA + +MG  +   D+  V+  A+ 
Sbjct: 184 VAFVKTVGHRDNINEE---VLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEE 240

Query: 274 VMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 333
           +  L + RKKL +Y+   M+D+APNL +L+G  + ARLIS AG L  LA  PSST+Q+LG
Sbjct: 241 IDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLG 300

Query: 334 AEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNT 393
           AEKALFR L+T    PK+G+I+    I R+    +G++AR LA K +IA+R+D F+ +  
Sbjct: 301 AEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEY- 359

Query: 394 TIFGEKLREQVEERLD 409
               E+L++++E R+ 
Sbjct: 360 --IAEELKKELEARIR 373
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Length = 388 Back     alignment and structure
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Length = 260 Back     alignment and structure
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Length = 255 Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Length = 268 Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Length = 258 Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Length = 258 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Length = 169 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 100.0
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 100.0
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 100.0
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 100.0
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 100.0
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 100.0
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 100.0
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Back     alignment and structure
Probab=100.00  E-value=6.5e-110  Score=871.48  Aligned_cols=372  Identities=33%  Similarity=0.489  Sum_probs=345.1

Q ss_pred             CccEEeecCcceeeeeeeccccccccchHHHHHHhhcHhhhccceEeeccccCC-CHHHHHHHHhhhhccCCCHHHHHHH
Q 008571            1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFE-SALDALNQCNSVSEGLMTNELRNFL   79 (561)
Q Consensus         1 m~~~vLfEtaaGYALFkv~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~-s~~~Ale~~~~i~eG~~~~~Lk~FL   79 (561)
                      |+-.+|+|++.||.+|.=.                         .+|++|.||+ |+++|++++++|++|++++.|++||
T Consensus         1 ~~k~yl~~~~~G~~a~de~-------------------------~~l~~~~~f~~s~~~ale~~~~i~eg~~~~~L~~fL   55 (388)
T 3pla_A            1 MVKIYLIEHVIGAVAYDEN-------------------------GNIVDYITNPRDLGKITEELLNNEKGIPFSATVELL   55 (388)
T ss_dssp             --CEEEEEETTEEEEECSS-------------------------SCEEEEEECCSCHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CceEEEEecceeeEEECCC-------------------------CCeEeecCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            5558899999999999421                         2788999997 9999999999999999999999999


Q ss_pred             HhhCcccccccCCceEEEecChhhhhhhhhhcccccc--cChhHHHHHHHHhhhhhhhhc--cCC--cccHHHHHhhhhH
Q 008571           80 ELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQ--SNEFVLELLRGVRLHFDRFIK--DLK--PGDLEKAQLGLGH  153 (561)
Q Consensus        80 ~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~--~~~~v~EllRgIR~~~~kll~--~l~--~~d~~k~~lgLaH  153 (561)
                      +.|+|         .+|+|+|++||..|++. |++|.  +++   .++|+||.|+.+++.  ++.  ++|+.++++||+|
T Consensus        56 ~~~~~---------~~l~V~d~~L~~~i~~~-~~~~~~~~~~---~~~~~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~  122 (388)
T 3pla_A           56 KKVNP---------QEVVVENEAEVPKLQAL-GYRVSYEPYS---KVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSL  122 (388)
T ss_dssp             HHSCC---------SEEEESCTTTHHHHHHT-TCEEEECTTC---HHHHHHHHTTTTHHHHTTSSSSSHHHHHHHHHHHH
T ss_pred             HHhCC---------CeEEEECHHHHHHHHHc-CCCeeecCch---HHHHHHHHhHHHHhHhcCCCCChHHHHHHHHHHHH
Confidence            99886         36999999999999986 89886  444   567888999999997  455  7899999999999


Q ss_pred             HHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhh
Q 008571          154 SYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPA  233 (561)
Q Consensus       154 s~SR~Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~  233 (561)
                      +|||+||+|++++.|+||||||+++|+||++||.|+||||||||||||||++||+||.+|+++|+.||||.+++.+++.+
T Consensus       123 ~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~~iV~d~~~Yak~V~~ignr~~~~~~~l~~  202 (388)
T 3pla_A          123 EYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKE  202 (388)
T ss_dssp             HHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGTTTCCCHHHHHHHHHHTCSGGGCCHHHHHT
T ss_pred             HHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcCCHHHHHHHHHHhcCcccCChhhHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998766555


Q ss_pred             hhhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHH
Q 008571          234 LTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLIS  313 (561)
Q Consensus       234 l~~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs  313 (561)
                      +   ..+++.++.|..+|++|||++||+.|+.+|..+|++|++|.++|++|.+||++||..||||||+|||+.||||||+
T Consensus       203 l---~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs  279 (388)
T 3pla_A          203 L---GFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLS  279 (388)
T ss_dssp             T---TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             c---CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHHHHHHHH
Confidence            4   2346678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcchhccCCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCC
Q 008571          314 HAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNT  393 (561)
Q Consensus       314 ~AGsL~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~  393 (561)
                      |||||.+||||||||||+|||||||||||+|+++|||||+||||++|+++|||+||||+|+||+|||||||||+|++.  
T Consensus       280 ~AGgL~~LAK~PAstIQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAaK~aLAARiD~~~g~--  357 (388)
T 3pla_A          280 IAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGR--  357 (388)
T ss_dssp             HHSSHHHHHTSCHHHHTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred             HcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHHHHHHHHhhcccCCc--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999864  


Q ss_pred             chHHHHHHHHHHHHHHhhhcCCC
Q 008571          394 TIFGEKLREQVEERLDFYDKGVA  416 (561)
Q Consensus       394 ~~~G~~lr~~ie~rl~~l~~~~~  416 (561)
                       .||.+||++|++||++|+++..
T Consensus       358 -~~G~~lreeie~ri~kl~e~~~  379 (388)
T 3pla_A          358 -FIGDQLNEQLKKRIDEIKEKFA  379 (388)
T ss_dssp             -CCHHHHHHHHHHHHHHHHCC--
T ss_pred             -ccCHHHHHHHHHHHHHHhCccc
Confidence             4799999999999999998643
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Back     alignment and structure
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Back     alignment and structure
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 561
d2ozbb1249 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle 1e-110
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 2e-58
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 9e-23
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  327 bits (841), Expect = e-110
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 2/244 (0%)

Query: 168 DNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLT 227
             +++ A  L   ++ ++N     +R+ YS  FPEL  +V +   Y R VK + +     
Sbjct: 6   YRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKC 65

Query: 228 DDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEY 287
            +    L  IL        +      + GQ LS  +L  ++      ++L+  + ++YEY
Sbjct: 66  KNNE-NLQQIL-TNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEY 123

Query: 288 LVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGN 347
           + ++M+ IAPNL+ +IG    A+++  AG LTNL+K P+  + +LGA++       +   
Sbjct: 124 VESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSV 183

Query: 348 TPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEER 407
            P  G I+HS  +       + + AR +A KC++A+R+D F E      G +L++++E +
Sbjct: 184 LPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERK 243

Query: 408 LDFY 411
            D +
Sbjct: 244 FDKW 247
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
d2ozbb1249 U4/U6 small nuclear ribonucleoprotein Prp31 {Human 100.0
d1nt2b_256 Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 223 100.0
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-83  Score=636.20  Aligned_cols=247  Identities=27%  Similarity=0.483  Sum_probs=227.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhhcCChHHH
Q 008571          165 NRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKA  244 (561)
Q Consensus       165 ~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~il~~~~~~  244 (561)
                      +.+++||||||.++|+||++||.||||||||||||||||++||+||.+|+++|+.|||+.+++... .+|.++++ ++.+
T Consensus         3 ~pEy~lIvq~~~l~~~iD~ein~~~~~lrewY~~~FPEL~~lv~~~~~Y~~~V~~i~~~~~~~~~~-~~l~~~l~-~~~~   80 (249)
T d2ozbb1           3 APEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNN-ENLQQILT-NATI   80 (249)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTC-TTGGGTSC-HHHH
T ss_pred             ChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcChhHHHHcCCHHHHHHHHHHHcCccccccch-hHHHHhCC-HHHH
Confidence            357899999999999999999999999999999999999999999999999999999999886543 35666776 5668


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccC
Q 008571          245 KEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKC  324 (561)
Q Consensus       245 ~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~LAk~  324 (561)
                      +.|..+|++|||++|++.|+.+|..+|+++++|+++|+.|.+||++||..||||||+|||+.+|||||++||||.+||+|
T Consensus        81 ~~i~~aa~~s~G~~ls~~dl~~i~~~~~~i~~L~~~r~~l~~yi~~rm~~iAPNl~aLvG~~~aArLi~~AGgL~~LAk~  160 (249)
T d2ozbb1          81 MVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKM  160 (249)
T ss_dssp             HHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS
T ss_pred             HHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHCchHHHHHHHHhCCHHHHHhC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHH
Q 008571          325 PSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQV  404 (561)
Q Consensus       325 PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~~lr~~i  404 (561)
                      ||||||+|||+|+||+||+++++||||||||||++|+++|||+||||+|+||+|||||||||+|+++++|.||.+||++|
T Consensus       161 PastIq~LGaeKalf~~l~~~~~~pk~G~i~~~~~V~~~p~~~rgk~~R~lA~K~slAARiD~~~~~~~~~~G~~~r~~i  240 (249)
T d2ozbb1         161 PACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI  240 (249)
T ss_dssp             CHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHH
T ss_pred             ChHHHHHHhhhhhhHHHHhcCCCCCCCCeeecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHhHcCCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 008571          405 EERLDFYDK  413 (561)
Q Consensus       405 e~rl~~l~~  413 (561)
                      ++||++|++
T Consensus       241 e~ki~k~~E  249 (249)
T d2ozbb1         241 ERKFDKWQE  249 (249)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999999974
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure