Citrus Sinensis ID: 008576
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 561 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPI5 | 725 | Peroxisomal fatty acid be | yes | no | 0.998 | 0.772 | 0.792 | 0.0 | |
| O49809 | 725 | Glyoxysomal fatty acid be | N/A | no | 0.978 | 0.757 | 0.790 | 0.0 | |
| Q39659 | 725 | Glyoxysomal fatty acid be | N/A | no | 0.978 | 0.757 | 0.795 | 0.0 | |
| Q9ZPI6 | 721 | Peroxisomal fatty acid be | no | no | 0.978 | 0.761 | 0.570 | 0.0 | |
| Q8W1L6 | 726 | Peroxisomal fatty acid be | no | no | 0.978 | 0.756 | 0.557 | 0.0 | |
| A8A2L0 | 714 | Fatty acid oxidation comp | yes | no | 0.939 | 0.738 | 0.330 | 8e-76 | |
| Q0HKD1 | 709 | Fatty acid oxidation comp | yes | no | 0.948 | 0.750 | 0.347 | 2e-75 | |
| Q0HWN3 | 709 | Fatty acid oxidation comp | yes | no | 0.948 | 0.750 | 0.347 | 3e-75 | |
| Q48GW3 | 721 | Fatty acid oxidation comp | yes | no | 0.934 | 0.726 | 0.318 | 4e-74 | |
| A0KV76 | 709 | Fatty acid oxidation comp | yes | no | 0.950 | 0.751 | 0.342 | 5e-74 |
| >sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/560 (79%), Positives = 500/560 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+ R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI FA+AQ K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T K
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEKDI+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA +MGMGFPPYRGGIMFWADS+GSKYIYSRL+EWS YGEFFKPCAFLA
Sbjct: 646 GIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLA 705
Query: 541 ERAGKGATLVRNLKLFFSYL 560
ER KG L +K S L
Sbjct: 706 ERGSKGVLLSAPVKQASSRL 725
|
Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18). Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2 | Back alignment and function description |
|---|
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/549 (79%), Positives = 492/549 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +L++ AR+WALDI E R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFA+ Q R+QAPN+ HP++C++ VE G+VSG RAGL+KEA+ +++ +T K
Sbjct: 226 EAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++ KVAI+GGGLMGSGIATALILSNY VILKEVNE
Sbjct: 286 LIHVFFSQRGTTKVPGVTDRGLVPRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRVKKGKM++EKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LVE GTD YLID+A
Sbjct: 466 NHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
++KFGMPMGPFRL DLVGFGVAIAT QFIENFPERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 VSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD+RRKA PDPE+K +I+KARS+SG DPK KLSEK+I+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA + GMGFPPYRGGIMFWADS+GSKYIYS+LEEWS YGEFFKPCAFLA
Sbjct: 646 GIAVKAADLDIAGIFGMGFPPYRGGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLA 705
Query: 541 ERAGKGATL 549
ER KGA L
Sbjct: 706 ERGSKGAPL 714
|
Brassica napus (taxid: 3708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/549 (79%), Positives = 491/549 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKP+KG+EAHSLGLVDA+V P +L++TAR+WAL+ILE RRPWV +L++TDK+E L
Sbjct: 166 MMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLA 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR+IF ARAQA+KQ PNL H I CID VE GVVSGPRAGL KEAE+FQ LL S+TCKS
Sbjct: 226 EARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKS 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+HIFFAQR T+KVPGVTDLGL PR++KKVAI+GGGLMGSGIATALILSNY V+LKEVN+
Sbjct: 286 LIHIFFAQRSTTKVPGVTDLGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVND 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI RVRANLQSRVKKG MT EKFEK+ISLL GVL+YESFKDVDMVIEA+IENVSL
Sbjct: 346 KFLQAGIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHC+LA+NTSTIDL LIGER S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
T+ QVIVDLLD+GK IKKTP+VVGNCTGFAVNRMFFPY+QAA LL E G D Y IDRA
Sbjct: 466 KHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVA AT QF++ FPERTYKSM+IP+MQEDK AGE+TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
Y+YD+ RKA P+PE+KK+IEKAR+ SGV++DPK KL EKDIVEMIFFPVVNEACRV AE
Sbjct: 586 YVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA VMGMGFP YRGG+MFWADSLGS YIYSRLEEWS YG FFKPC +LA
Sbjct: 646 GIAVKAADLDIAGVMGMGFPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLA 705
Query: 541 ERAGKGATL 549
ERA +GATL
Sbjct: 706 ERAVQGATL 714
|
Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/549 (57%), Positives = 412/549 (75%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+L SK + EE H LGL+DA+V P ++ST+R+WALDI E R+P++ +L++TDKI L
Sbjct: 163 MILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLS 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR I K +R A+K APN+ CI+V+E G++ G +G+ KEAE F++L+ S+T K
Sbjct: 223 EARAILKNSRQLAKKIAPNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKG 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH+FFAQR TSKVP VTD+GL PR +KKVA++GGGLMGSGIATAL+LSN V+LKE+N
Sbjct: 283 LVHVFFAQRATSKVPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINS 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL GI V AN++S V +GK+TQ+K K +SL GVLDY F DVDMVIEA+IEN+ L
Sbjct: 343 EFLMKGIKSVEANMKSLVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQ IF ++EK C PHCILASNTSTIDL++IGE+T SKDRIVGAHFFSPAH+MPLLEIVR+
Sbjct: 403 KQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRS 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
TS QVI+DL+ +GK IKK P+VVGNC GFAVNR FFPY+QAA +L G DL+ ID
Sbjct: 463 KNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
IT FG+P+GPF+L DL G G+ +A G + + + +R ++S + ++ + R G+ +G+
Sbjct: 523 ITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGY 582
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
Y+Y++ K PDP V +EK+R ++ + K +++K+IVEMI FPVVNEACRV E
Sbjct: 583 YIYEKGSKPKPDPSVLSIVEKSRKLTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDE 642
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
G+ ++A+DLDIASV+GM FP YRGGI+FWAD++G KYIY RL++ S YG FFKP +L
Sbjct: 643 GVVIRASDLDIASVLGMSFPSYRGGIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLE 702
Query: 541 ERAGKGATL 549
ERA G L
Sbjct: 703 ERAMNGMLL 711
|
Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/549 (55%), Positives = 414/549 (75%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MML SK + +E GLVDA+ +P++L+ +R WAL+I +R+PW+ +L +TD++ L
Sbjct: 163 MMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLS 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR + AR QA+K A NL C+DV+E GV+ G AG+ KEA+ F++L+ S T K+
Sbjct: 223 EARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKA 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH FFAQR T+KVPGVTD+ L PR+++KVA++GGGLMGSGIATAL++SN V+LKEVN
Sbjct: 283 LVHAFFAQRLTTKVPGVTDVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNP 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL+ G + ANL+ VK+G +T++K K +SLL G LDY FKDVDMVIEA+IE + L
Sbjct: 343 QFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQ IF+DLEK CPPHCILA+NTSTIDLN++GE+T S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQ I+DL+ +GK IKK P+VVGNCTGFAVNR FFPYTQ + LLV G D++ IDR
Sbjct: 463 EKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+ FGMPMGPF+L DL G+GVA+A + F R S ++ +M ++ R G++ KG+
Sbjct: 523 ISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY 582
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLY++ K PDP V+ I++ R + K LS++DI+EMIFFPVVNEACRV E
Sbjct: 583 YLYEKGGKPKPDPSVQVVIDEYRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDE 642
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
+ ++A+DLDIAS++GMGFP +RGG++FWAD++G+ YI+S+L +W+ +YG+FFKP ++L
Sbjct: 643 NVVIRASDLDIASILGMGFPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLE 702
Query: 541 ERAGKGATL 549
+RA + L
Sbjct: 703 DRAKRSLPL 711
|
Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 185/559 (33%), Positives = 286/559 (51%), Gaps = 32/559 (5%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EP 58
M+LT K ++ ++A LGLVD VV P+ ++ A A+++ + RP L ++I P
Sbjct: 167 MILTGKQLRAKQALKLGLVDDVV-PHSILLEA---AVELAKKDRPSSRPLPVRERILAGP 222
Query: 59 LGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
LG A + K N ++VVE G+ G +G EA F +L +
Sbjct: 223 LGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQS 282
Query: 119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIA-TALILSNYPVILKE 177
++L IFFA K PG +D AP + V ILGGGLMG+GIA + PV +K+
Sbjct: 283 QALRSIFFASTDVKKDPG-SDAPPAP--LNSVGILGGGLMGAGIAYVTACKAGLPVRIKD 339
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
+N + + + L+ +V++ + + +K ++L++G DY F D++IEA+ EN
Sbjct: 340 INPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFEN 399
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
+ LKQQ+ A++E+ C H I ASNTS++ + I ++++G HFFSP MPL+EI
Sbjct: 400 LELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEI 459
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
+ TS Q I + + KK KTPIVV + GF VNR+ PY A ++ G + I
Sbjct: 460 IPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHI 519
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIATGMQFI----ENFPER-TYKSMIIPIMQEDKRA 412
D A+ KFG P+GP +L D VG I TG + I + ER + + ++ + D R
Sbjct: 520 DAALVKFGFPVGPIQLLDEVG----IDTGTKIIPVLEAAYGERFSAPANVVSSILNDDRK 575
Query: 413 GETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFP 469
G +GFYLY ++ + S DP + I +LS + E
Sbjct: 576 GRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGAQGQ----------GRLSAPQVAERCVML 625
Query: 470 VVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLY 529
++NEA R E + D DI +V G+GFPP+ GG + DSLG+ + + ++ ++ Y
Sbjct: 626 MLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLATQY 685
Query: 530 GEFFKPCAFLAERAGKGAT 548
G F PC L E +G +
Sbjct: 686 GSRFTPCERLVEMGARGES 704
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Escherichia coli O9:H4 (strain HS) (taxid: 331112) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q0HKD1|FADJ_SHESM Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-4) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 192/553 (34%), Positives = 288/553 (52%), Gaps = 21/553 (3%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLT K ++ ++A +GLV+ VV L+ TA + AL +P +L +E G
Sbjct: 165 MMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRTAKPVKKSLV-NQLLEGTG 223
Query: 61 EAREIF--KFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
R I + A+ A+K N P ID V G+ G + GL+ EA F +L+ S+
Sbjct: 224 FGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQGMAKGMQKGLEVEASHFAELVVSKES 283
Query: 119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILKE 177
++L IFFA K G G PR+VKK ILGGGLMG GIA+ + P +K+
Sbjct: 284 EALRSIFFATTEMKKETGAE--GATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKD 341
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
+NEK L + L VK+ MT + ++L+T +Y+ KD D+V+EA+ E+
Sbjct: 342 INEKGLSNALSYAYKLLDKGVKRRHMTPAVRDNLMALMTTTTEYKGVKDADIVVEAVFED 401
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
++LK Q+ D+E+ C H I ASNTS++ + I + + ++G H+FSP MPL+E+
Sbjct: 402 LALKHQMVKDIERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEV 461
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
+ +TSP+ I + +K KTPIVV + GF VNR+ Y A L+ G + +
Sbjct: 462 IAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSIEHL 521
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTR 417
D+A+ KFG P+GP L D VG V + ER + D R G
Sbjct: 522 DKALVKFGFPVGPITLLDEVGIDVGAKIAPILEKELGERFKAPAAFDKLLSDDRKGRKNG 581
Query: 418 KGFYLYDERRKASPDPEVKKFIEKARSMSGV-----AIDPKFAKLSEKDIVEMIFFPVVN 472
KGFY Y KA P KK +++ S+ GV ID + + ++E+ +V+M+ N
Sbjct: 582 KGFYQYAAGNKA---PSKKKAVDE--SVYGVLGIKPGIDKEMSAVAERCVVQML-----N 631
Query: 473 EACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF 532
EA R +GI D DI ++ G+GFPP+ GG + D+LG+ + LE + + YG+
Sbjct: 632 EAVRCLDDGIIASPRDGDIGAIFGIGFPPFLGGPFHYIDTLGADNLVKILERYQAQYGDR 691
Query: 533 FKPCAFLAERAGK 545
F+PC L E A +
Sbjct: 692 FEPCPRLKEMAAE 704
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Shewanella sp. (strain MR-4) (taxid: 60480) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q0HWN3|FADJ_SHESR Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-7) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 192/553 (34%), Positives = 287/553 (51%), Gaps = 21/553 (3%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLT K ++ ++A +GLV+ VV L+ TA + AL +P +L +E G
Sbjct: 165 MMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRTAKPVKKSLV-NQLLEGTG 223
Query: 61 EAREIF--KFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
R I + A+ A+K N P ID V G+ G + GL+ EA F +L+ S+
Sbjct: 224 FGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQGMAKGMQKGLEVEASHFAELVVSKES 283
Query: 119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILKE 177
++L IFFA K G G PR+VKK ILGGGLMG GIA+ + P +K+
Sbjct: 284 EALRSIFFATTEMKKETGAE--GATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKD 341
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
+NEK L + L VK+ MT + ++L+T +Y+ KD D+V+EA+ E+
Sbjct: 342 INEKGLSNALSYAYKLLDKGVKRRHMTPAVRDNLMALMTTTTEYKGVKDADIVVEAVFED 401
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
++LK Q+ D+E+ C H I ASNTS++ + I + + ++G H+FSP MPL+E+
Sbjct: 402 LALKHQMVKDIERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEV 461
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
+ +TSP+ I + +K KTPIVV + GF VNR+ Y A L+ G + +
Sbjct: 462 IAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSIEHL 521
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTR 417
D+A+ KFG P+GP L D VG V ER + D R G
Sbjct: 522 DKALVKFGFPVGPITLLDEVGIDVGAKIAPILETELGERFKAPAAFDKLLSDDRKGRKNG 581
Query: 418 KGFYLYDERRKASPDPEVKKFIEKARSMSGV-----AIDPKFAKLSEKDIVEMIFFPVVN 472
KGFY Y KAS KK +++ S+ GV ID + + ++E+ +V+M+ N
Sbjct: 582 KGFYQYAAGNKASSK---KKVVDE--SVYGVLGIKPGIDKEMSAVAERCVVQML-----N 631
Query: 473 EACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF 532
EA R +GI D DI ++ G+GFPP+ GG + D+LG+ + LE + + YG+
Sbjct: 632 EAVRCLDDGIIASPRDGDIGAIFGIGFPPFLGGPFHYIDTLGADNLVKILERYQAQYGDR 691
Query: 533 FKPCAFLAERAGK 545
F+PC L E A +
Sbjct: 692 FEPCPRLKEMAAE 704
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Shewanella sp. (strain MR-7) (taxid: 60481) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q48GW3|FADB_PSE14 Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 180/566 (31%), Positives = 290/566 (51%), Gaps = 42/566 (7%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
+ K E+A +G VDAVVAP +L + A D R+P K DK+
Sbjct: 170 SGKESSAEDALKVGAVDAVVAPEKLQAAALDLIQRAISGEFDYKAKRQP------KLDKL 223
Query: 57 EPLGEAREIFKFARAQ---ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL 113
+ L ++ F A+ A + PN P+ I ++ G L+ EA F K+
Sbjct: 224 K-LNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEIEAAGFVKMA 282
Query: 114 RSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPV 173
++ +SL+ +F + K D + VK+ A+LG G+MG GIA + P+
Sbjct: 283 KTSAAQSLIGLFLNDQELKKKAKGYDA--VAKDVKQAAVLGAGIMGGGIAYQSAVKGTPI 340
Query: 174 ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 233
++K++ E+ ++ G+ L R++KG++T K + ++ + L Y F +VD+V+EA
Sbjct: 341 LMKDIREEAIQLGLNEASKLLGGRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEA 400
Query: 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP 293
++EN +KQ + A++E H ILASNTSTI ++L+ + + VG HFF+P H+MP
Sbjct: 401 VVENPKVKQAVLAEVEANVGEHTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMP 460
Query: 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTD 353
L+E++R ++S + + + +K+ K PIVV +C GF VNR+ FPY LV G D
Sbjct: 461 LVEVIRGEKSSEEAVATTVAYARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVD 520
Query: 354 LYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKR 411
ID+ + KFG PMGP L D+VG E FP+R + ++ + E KR
Sbjct: 521 FVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSVVDALYEAKR 580
Query: 412 AGETTRKGFYLYDERRKASP----DPEV----KKFIEKARSMSGVAIDPKFAKLSEKDIV 463
G+ KGFY Y+ +K P DP V K + + R ++S++DI+
Sbjct: 581 LGQKNGKGFYAYETDKKGKPKKVNDPAVLDVLKPIVYEQR------------EVSDEDII 628
Query: 464 EMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLE 523
+ P+ E R +GI AA+ D+ + G+GFPP+RGG + + DS+G + +
Sbjct: 629 NWMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALAD 688
Query: 524 EWSSLYGEFFKPCAFLAERAGKGATL 549
+++ L G ++P A L E A KG +
Sbjct: 689 QYAEL-GALYQPTAKLREMASKGQSF 713
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A0KV76|FADJ_SHESA Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 189/552 (34%), Positives = 286/552 (51%), Gaps = 19/552 (3%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLT K ++ ++A +GLV+ VV L+ TA + AL +P +L +E G
Sbjct: 165 MMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRTAKPVKKSLV-NQLLEGTG 223
Query: 61 EAREIF--KFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
R I + A+ +K N P ID V G+ G + GL+ EA F +L+ S+
Sbjct: 224 FGRNIIFDQAAKQVVKKTQGNYPAPAKIIDCVRQGMAKGMQKGLEVEASHFAELVVSKES 283
Query: 119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILKE 177
++L IFFA K G G PR+VKK ILGGGLMG GIA+ + P +K+
Sbjct: 284 EALRSIFFATTEMKKETGAE--GATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKD 341
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
+NEK L + L VK+ MT + ++L+T +Y+ KD D+V+EA+ E+
Sbjct: 342 INEKGLSNALSYAYKLLDKGVKRRHMTPAVRDNLMALMTTTTEYKGVKDADIVVEAVFED 401
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
++LK Q+ D+E+ C H I ASNTS++ + I + + ++G H+FSP MPL+E+
Sbjct: 402 LALKHQMVKDIERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEV 461
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
+ +TSP+ I + +K KTPIVV + GF VNR+ Y A L+ G + +
Sbjct: 462 IAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSIEHL 521
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTR 417
D+A+ KFG P+GP L D VG V + ER + D R G
Sbjct: 522 DKALVKFGFPVGPITLLDEVGIDVGAKIAPILEKELGERFKAPAAFDKLLSDDRKGRKNG 581
Query: 418 KGFYLYDERRKASPDPEVKKFIEKARSMSGV--AIDPKFAKLSEKDIVEMIFFPVVNEAC 475
KGFY Y KAS + K E ++ G+ +D + ++E+ +V+M+ NEA
Sbjct: 582 KGFYQYAAGNKAS--SKKKAVDESVYAVLGIKPGMDKDLSAVAERCVVQML-----NEAV 634
Query: 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKP 535
R +GI D DI ++ G+GFPP+ GG + D+LG+ + + LE + + YG+ F+P
Sbjct: 635 RCLDDGIIASPRDGDIGAIFGIGFPPFLGGPFHYIDTLGADNLVNILERYQAQYGDRFEP 694
Query: 536 C----AFLAERA 543
C A AE+A
Sbjct: 695 CPRLKAMAAEKA 706
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Shewanella sp. (strain ANA-3) (taxid: 94122) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 561 | ||||||
| 224107106 | 726 | predicted protein [Populus trichocarpa] | 0.978 | 0.756 | 0.861 | 0.0 | |
| 225431755 | 724 | PREDICTED: glyoxysomal fatty acid beta-o | 0.987 | 0.765 | 0.862 | 0.0 | |
| 296083347 | 765 | unnamed protein product [Vitis vinifera] | 0.987 | 0.724 | 0.862 | 0.0 | |
| 224130412 | 726 | predicted protein [Populus trichocarpa] | 0.978 | 0.756 | 0.854 | 0.0 | |
| 356521845 | 724 | PREDICTED: glyoxysomal fatty acid beta-o | 0.987 | 0.765 | 0.832 | 0.0 | |
| 351723429 | 723 | peroxisomal fatty acid beta-oxidation mu | 0.978 | 0.759 | 0.832 | 0.0 | |
| 357478819 | 724 | Glyoxysomal fatty acid beta-oxidation mu | 0.978 | 0.758 | 0.82 | 0.0 | |
| 171854673 | 725 | putative glyoxysomal fatty acid beta-oxi | 0.978 | 0.757 | 0.819 | 0.0 | |
| 356564184 | 722 | PREDICTED: peroxisomal fatty acid beta-o | 0.978 | 0.760 | 0.806 | 0.0 | |
| 297829230 | 723 | hypothetical protein ARALYDRAFT_478006 [ | 0.998 | 0.774 | 0.792 | 0.0 |
| >gi|224107106|ref|XP_002314377.1| predicted protein [Populus trichocarpa] gi|222863417|gb|EEF00548.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/549 (86%), Positives = 517/549 (94%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKPVKGEEAH+LGLVDAVV+PN+LVSTARQWALDILE RRPW+A+LYKT+K++ LG
Sbjct: 167 MMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQWALDILERRRPWIASLYKTEKLDSLG 226
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREIFKFAR Q RK+APNLTHPIVCIDV+E G+VSGPR GL KE E F +L+RS+TCKS
Sbjct: 227 EAREIFKFAREQVRKRAPNLTHPIVCIDVIEHGIVSGPRDGLYKELESFHELVRSDTCKS 286
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+HIFFAQRGT+KVPG+TDLGL PRRVKKVA+LGGGLMGSGIATAL+LSNYPVILKEVN
Sbjct: 287 LIHIFFAQRGTTKVPGITDLGLVPRRVKKVAVLGGGLMGSGIATALVLSNYPVILKEVNN 346
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL+AGIGRVRANLQSRVKKG+MTQEKFEKT+SLL G LDYESFKDVDMVIEA+IENVSL
Sbjct: 347 QFLQAGIGRVRANLQSRVKKGRMTQEKFEKTMSLLKGALDYESFKDVDMVIEAVIENVSL 406
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHCILASNTSTIDLNLIG++T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 407 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRT 466
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTSPQVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LLVE G DLY ID+
Sbjct: 467 KQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAALLLVEHGADLYQIDKV 526
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATG QF+ NFPERTYKSM+IP+MQEDKRAGETTRKGF
Sbjct: 527 ITKFGMPMGPFRLVDLVGFGVAIATGTQFVVNFPERTYKSMLIPLMQEDKRAGETTRKGF 586
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD+RRKA PDPE++K+IEKAR++SGVA DPK AKL EKDIVEMIFFPVVNEACRVFAE
Sbjct: 587 YLYDDRRKAKPDPELRKYIEKARNISGVANDPKLAKLPEKDIVEMIFFPVVNEACRVFAE 646
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDI+S+MGMGFPPYRGGIMFWADSLGSKYIYSRLEEWS YGEFFKPCAFLA
Sbjct: 647 GIAVKAADLDISSLMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSKTYGEFFKPCAFLA 706
Query: 541 ERAGKGATL 549
ERA KGA L
Sbjct: 707 ERAAKGAPL 715
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431755|ref|XP_002270067.1| PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/554 (86%), Positives = 514/554 (92%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MML SKPVKG +AHSLGLVDAVVAP+QLV TARQWALDILE RRPWV +LYKTDK+EPLG
Sbjct: 165 MMLMSKPVKGVDAHSLGLVDAVVAPDQLVKTARQWALDILECRRPWVHSLYKTDKLEPLG 224
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFAR QA+KQAPNL HP++CIDV+EAG+VSGP AGL KEAE FQ+LL S+ CKS
Sbjct: 225 EAREILKFARTQAQKQAPNLKHPLLCIDVIEAGIVSGPVAGLWKEAEAFQELLHSDICKS 284
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVHIFFAQRGTSKVPG+ DLGL PRR+ KVAILGGGLMGSGIATAL+LSNYPVILKEVNE
Sbjct: 285 LVHIFFAQRGTSKVPGIADLGLVPRRINKVAILGGGLMGSGIATALMLSNYPVILKEVNE 344
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGIGRVRANLQSRVKKG MTQEKFEKT SLL GVLDYESFKDVDMVIEA+IENVSL
Sbjct: 345 KFLQAGIGRVRANLQSRVKKGAMTQEKFEKTFSLLKGVLDYESFKDVDMVIEAVIENVSL 404
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEK+CPPHCILASNTSTIDLNLIGE+T S DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 405 KQQIFADLEKFCPPHCILASNTSTIDLNLIGEKTRSHDRIVGAHFFSPAHVMPLLEIVRT 464
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQVIVDLLDIGKKIKKTP+VVGNCTGFAVNRMF PYTQAA LLVE G D+Y IDRA
Sbjct: 465 QRTSPQVIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFSPYTQAALLLVEHGADVYQIDRA 524
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATG QF++NFPERTYKSM+IPIMQEDKRAGETTRKGF
Sbjct: 525 ITKFGMPMGPFRLVDLVGFGVAIATGGQFVQNFPERTYKSMLIPIMQEDKRAGETTRKGF 584
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
Y+YD++RKASPDPE+KK++EKAR +SGVAIDPK KLS+KDIVEMIFFPVVNEACRV+AE
Sbjct: 585 YVYDDKRKASPDPELKKYVEKARGISGVAIDPKLMKLSDKDIVEMIFFPVVNEACRVYAE 644
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA VMGMGFPPYRGGIMFWADSLGSKYIYSRLE WS+LYG FFKPCA+LA
Sbjct: 645 GIAVKAADLDIAGVMGMGFPPYRGGIMFWADSLGSKYIYSRLEAWSNLYGGFFKPCAYLA 704
Query: 541 ERAGKGATLVRNLK 554
ERA KGA L L+
Sbjct: 705 ERAAKGAPLSSPLE 718
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083347|emb|CBI22983.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/554 (86%), Positives = 514/554 (92%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MML SKPVKG +AHSLGLVDAVVAP+QLV TARQWALDILE RRPWV +LYKTDK+EPLG
Sbjct: 206 MMLMSKPVKGVDAHSLGLVDAVVAPDQLVKTARQWALDILECRRPWVHSLYKTDKLEPLG 265
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFAR QA+KQAPNL HP++CIDV+EAG+VSGP AGL KEAE FQ+LL S+ CKS
Sbjct: 266 EAREILKFARTQAQKQAPNLKHPLLCIDVIEAGIVSGPVAGLWKEAEAFQELLHSDICKS 325
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVHIFFAQRGTSKVPG+ DLGL PRR+ KVAILGGGLMGSGIATAL+LSNYPVILKEVNE
Sbjct: 326 LVHIFFAQRGTSKVPGIADLGLVPRRINKVAILGGGLMGSGIATALMLSNYPVILKEVNE 385
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGIGRVRANLQSRVKKG MTQEKFEKT SLL GVLDYESFKDVDMVIEA+IENVSL
Sbjct: 386 KFLQAGIGRVRANLQSRVKKGAMTQEKFEKTFSLLKGVLDYESFKDVDMVIEAVIENVSL 445
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEK+CPPHCILASNTSTIDLNLIGE+T S DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 446 KQQIFADLEKFCPPHCILASNTSTIDLNLIGEKTRSHDRIVGAHFFSPAHVMPLLEIVRT 505
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQVIVDLLDIGKKIKKTP+VVGNCTGFAVNRMF PYTQAA LLVE G D+Y IDRA
Sbjct: 506 QRTSPQVIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFSPYTQAALLLVEHGADVYQIDRA 565
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATG QF++NFPERTYKSM+IPIMQEDKRAGETTRKGF
Sbjct: 566 ITKFGMPMGPFRLVDLVGFGVAIATGGQFVQNFPERTYKSMLIPIMQEDKRAGETTRKGF 625
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
Y+YD++RKASPDPE+KK++EKAR +SGVAIDPK KLS+KDIVEMIFFPVVNEACRV+AE
Sbjct: 626 YVYDDKRKASPDPELKKYVEKARGISGVAIDPKLMKLSDKDIVEMIFFPVVNEACRVYAE 685
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA VMGMGFPPYRGGIMFWADSLGSKYIYSRLE WS+LYG FFKPCA+LA
Sbjct: 686 GIAVKAADLDIAGVMGMGFPPYRGGIMFWADSLGSKYIYSRLEAWSNLYGGFFKPCAYLA 745
Query: 541 ERAGKGATLVRNLK 554
ERA KGA L L+
Sbjct: 746 ERAAKGAPLSSPLE 759
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130412|ref|XP_002328602.1| predicted protein [Populus trichocarpa] gi|222838584|gb|EEE76949.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/549 (85%), Positives = 513/549 (93%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKPVKGEEAH+LGLVDAVV+PN+LVSTARQWALDI E RRPW+A+LYKT+K++ LG
Sbjct: 167 MMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQWALDIFECRRPWIASLYKTEKLDSLG 226
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREIFKFARAQA+K+APNL HPIVCI+VVE G+VSGPRAGL KE E FQ+L+RS+ KS
Sbjct: 227 EAREIFKFARAQAQKRAPNLLHPIVCINVVEHGIVSGPRAGLYKEFESFQELVRSDISKS 286
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVHIFFA GT+KVPG+TDLG PR VKKVA+LGGGLMGSGIATALILSNYPVILKEVN+
Sbjct: 287 LVHIFFALHGTTKVPGITDLGFVPRLVKKVAVLGGGLMGSGIATALILSNYPVILKEVND 346
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL+AGIGRVRANLQSRVKKGKMTQEKFEKT+SLL G LDYESFKDVDMVIEA+IENVSL
Sbjct: 347 QFLQAGIGRVRANLQSRVKKGKMTQEKFEKTMSLLKGSLDYESFKDVDMVIEAVIENVSL 406
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHCILASNTSTIDLNLIG++T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 407 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRT 466
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTSPQVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LVE G DLY IDR
Sbjct: 467 KQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAIFLVEHGVDLYQIDRV 526
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRLADLVGFGVAIATGMQF+ENFPERTYKSM++P+MQEDKR GETT KGF
Sbjct: 527 ISKFGMPMGPFRLADLVGFGVAIATGMQFVENFPERTYKSMLLPLMQEDKRGGETTCKGF 586
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD+RRKA PDPE++K+IEKARS+SGVA+DPK AKL EKDIVEMIFFPVVNEACRVFAE
Sbjct: 587 YLYDDRRKAKPDPELRKYIEKARSISGVAVDPKLAKLPEKDIVEMIFFPVVNEACRVFAE 646
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIAS+MGMGFPPYRGGIMFWADS GSKYIYSRLEEWS YGEFF+PCAFLA
Sbjct: 647 GIAVKAADLDIASLMGMGFPPYRGGIMFWADSFGSKYIYSRLEEWSKTYGEFFEPCAFLA 706
Query: 541 ERAGKGATL 549
ER KGA L
Sbjct: 707 ERGAKGAPL 715
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521845|ref|XP_003529561.1| PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/554 (83%), Positives = 517/554 (93%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+L SKPVKG+EA SLGLVD +V+PN LV+TARQWALD+L HRRPW+A+LYKT+K+EPLG
Sbjct: 164 MILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLG 223
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFARAQARK+APNL HP+VCIDV+EAG+V+GPRAGL KEAE F+ L+RS+TCKS
Sbjct: 224 EAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKS 283
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH+FFAQRGTSKVPGVTD GLAPR+VKKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI R++ANLQSRVKKGK+T+E FEKTISLL G LDYESF+DVD+VIEA+IEN+SL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDLVIEAVIENISL 403
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHCILASNTSTIDLNLIGE+T S+DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 404 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKSQDRIVGAHFFSPAHVMPLLEIVRT 463
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTSPQVIVD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA LLVERG D+Y IDR
Sbjct: 464 KQTSPQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRI 523
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRLADLVGFGVAIATG QFI+NFPERTYKSM+IP++QED RAGETTRKGF
Sbjct: 524 ITKFGMPMGPFRLADLVGFGVAIATGTQFIQNFPERTYKSMLIPLLQEDNRAGETTRKGF 583
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD++RKASPDPE+K +IEKARS+SGV++DPK AKL EKDI+EMIFFPVVNEACRV E
Sbjct: 584 YLYDDKRKASPDPELKNYIEKARSISGVSVDPKLAKLQEKDIIEMIFFPVVNEACRVLDE 643
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDI+++MGMGFPPYRGGI+FWADSLGSKYIYSRLE+WS LYGEFFKPCA+LA
Sbjct: 644 GIAVKAADLDISAIMGMGFPPYRGGIIFWADSLGSKYIYSRLEKWSELYGEFFKPCAYLA 703
Query: 541 ERAGKGATLVRNLK 554
RA KG L +L+
Sbjct: 704 ARAAKGIPLSASLE 717
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351723429|ref|NP_001234975.1| peroxisomal fatty acid beta-oxidation multifunctional protein [Glycine max] gi|167962162|dbj|BAG09370.1| peroxisomal fatty acid beta-oxidation multifunctional protein [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/549 (83%), Positives = 511/549 (93%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+L SKPVKG+EA SLGLVD +V+PN LV+TARQWALD+L HRRPW+A+LYKT+K+EPLG
Sbjct: 164 MILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLG 223
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFARAQARK+APNL HP+VCIDV+EAG+V+GPRAGL KEAE F+ L+RS+TCKS
Sbjct: 224 EAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKS 283
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH+FFAQRGTSKVPGVTD GLAPR+VKKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI R++ANLQSRVKKGK+T+E FEKTISLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDMVIEAVIENISL 403
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHCILASNTSTIDLNLIGE+T ++DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 404 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKTQDRIVGAHFFSPAHVMPLLEIVRT 463
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTS QVIVD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA LLVERG D+Y IDR
Sbjct: 464 KQTSAQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRV 523
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATGMQFI+NFPERTYKSM+I ++QEDKRAGETT KGF
Sbjct: 524 ITKFGMPMGPFRLMDLVGFGVAIATGMQFIQNFPERTYKSMLISLLQEDKRAGETTHKGF 583
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLY+++RKASPDPE+K +IEKARS+SGV++DPK AKL EKDI+EMIFFPVVNEACRV E
Sbjct: 584 YLYNDKRKASPDPELKNYIEKARSISGVSVDPKLAKLQEKDIIEMIFFPVVNEACRVLDE 643
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDI+++MGMGFPPYRGGI+FWADSLGSKYIYSRLE+WS LYGEFFKPCA LA
Sbjct: 644 GIAVKAADLDISAIMGMGFPPYRGGIIFWADSLGSKYIYSRLEKWSELYGEFFKPCANLA 703
Query: 541 ERAGKGATL 549
RA KG L
Sbjct: 704 ARAAKGIPL 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478819|ref|XP_003609695.1| Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Medicago truncatula] gi|355510750|gb|AES91892.1| Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/550 (82%), Positives = 504/550 (91%), Gaps = 1/550 (0%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKPVKG++A S GLVD +V+P+QLV+TARQWALDIL+ RRPW+A+LYKT+KIEPLG
Sbjct: 164 MMLTSKPVKGKDAFSSGLVDGLVSPDQLVNTARQWALDILDRRRPWIASLYKTEKIEPLG 223
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFARAQARKQAPNL HP+VCIDV+EAG+VSGPRAGL KEAE F L++S+TCKS
Sbjct: 224 EAREILKFARAQARKQAPNLKHPLVCIDVIEAGIVSGPRAGLWKEAEAFDALVQSDTCKS 283
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+HIFFAQRGTSKVPGVTD GL PR VKKVAILGGGLMGSGIATALILSNY VILKEVNE
Sbjct: 284 LIHIFFAQRGTSKVPGVTDRGLVPRPVKKVAILGGGLMGSGIATALILSNYSVILKEVNE 343
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI R++ANLQSRVKKG +TQE+FEK SL+ G LDY+SF+DVDMVIEA+IENVSL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGNLTQERFEKAFSLVKGSLDYDSFRDVDMVIEAVIENVSL 403
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFF-SPAHVMPLLEIVR 299
KQQIFADLEKYCPPHCIL SNTSTIDL+LIGE+T S+DRI+GAHFF PAHVMPLLEIVR
Sbjct: 404 KQQIFADLEKYCPPHCILGSNTSTIDLDLIGEKTKSQDRIIGAHFFRCPAHVMPLLEIVR 463
Query: 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDR 359
T +TSPQVIVDLLDI KKIKKTP+VVGNCTGFAVNR+FFPYTQA LLVERG D+Y ID+
Sbjct: 464 TKRTSPQVIVDLLDISKKIKKTPVVVGNCTGFAVNRVFFPYTQATLLLVERGADVYQIDK 523
Query: 360 AITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKG 419
A+TKFGMPMGP RL DLVGFGVA+ATG QF++NFPERTYKSM+IP++QEDKRAGETTRKG
Sbjct: 524 AVTKFGMPMGPLRLCDLVGFGVAVATGSQFVQNFPERTYKSMLIPLLQEDKRAGETTRKG 583
Query: 420 FYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFA 479
FYLYD+RRKASPDPE+KKFIEKARS+SGV++DP KL EKDI+EMIFFPVVNEACRV
Sbjct: 584 FYLYDDRRKASPDPELKKFIEKARSISGVSVDPMLVKLQEKDIIEMIFFPVVNEACRVLD 643
Query: 480 EGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFL 539
EGI VKAADLDIA++MGMGFPPYRGGI+FWADSLGSKYIYSRLE+WS LYG FFKPCA+L
Sbjct: 644 EGIVVKAADLDIAAIMGMGFPPYRGGIIFWADSLGSKYIYSRLEKWSELYGPFFKPCAYL 703
Query: 540 AERAGKGATL 549
A RA KG L
Sbjct: 704 AARAAKGIPL 713
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|171854673|dbj|BAG16526.1| putative glyoxysomal fatty acid beta-oxidation multifunctional protein [Capsicum chinense] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/549 (81%), Positives = 506/549 (92%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVKGEEA +LGLVDAVV NQL+ TAR+WALDILE R+PWVA+L+KTDKIEPLG
Sbjct: 166 MILTSKPVKGEEAVNLGLVDAVVPSNQLLGTARKWALDILECRKPWVASLHKTDKIEPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREIFKFAR Q RKQAPNL H +V IDV+E G+VSGP AGL KEAE FQ LL S+TCK+
Sbjct: 226 EAREIFKFARVQTRKQAPNLQHLLVVIDVIEEGIVSGPLAGLWKEAEAFQALLHSDTCKA 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LV++FFAQR T+KVPGVTDLGL PRR+KKVAILGGGLMGSGIATAL+ S YPVILKEVN+
Sbjct: 286 LVNVFFAQRATTKVPGVTDLGLKPRRIKKVAILGGGLMGSGIATALLRSGYPVILKEVND 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AG+GRV+ANLQS VKKGKM+QEKFEKT+SLL G LDYE F+DVDMVIEA+IENVSL
Sbjct: 346 KFLQAGLGRVKANLQSSVKKGKMSQEKFEKTLSLLKGALDYEGFRDVDMVIEAVIENVSL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQ+FADLEKYCP HCILASNTSTIDLNLIGE+T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQVFADLEKYCPSHCILASNTSTIDLNLIGEKTKSQDRIIGAHFFSPAHVMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQ+IVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LLVERG D++ IDR
Sbjct: 466 QKTSPQIIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAALLLVERGADVFRIDRI 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATG QF+ NFPERTYKSM+IP+MQEDKRAGETTRKGF
Sbjct: 526 ITKFGMPMGPFRLCDLVGFGVAIATGGQFVMNFPERTYKSMLIPLMQEDKRAGETTRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
Y+YD+RRKASPDPE+KK+IEKAR MSGV ID K AKLS+KDI+EMIFFPVVNEACRV AE
Sbjct: 586 YVYDDRRKASPDPEIKKYIEKAREMSGVTIDHKMAKLSDKDIIEMIFFPVVNEACRVLAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVK++DLDI+++MGMGFPPYRGGI+FWAD+LGSKYI SRL+EWS +YG+FFKPC++LA
Sbjct: 646 GIAVKSSDLDISAIMGMGFPPYRGGIIFWADTLGSKYICSRLDEWSRMYGDFFKPCSYLA 705
Query: 541 ERAGKGATL 549
ERA KGA L
Sbjct: 706 ERAAKGAPL 714
|
Source: Capsicum chinense Species: Capsicum chinense Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564184|ref|XP_003550336.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/549 (80%), Positives = 498/549 (90%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKPVKG+EA SLGLVD +++P+ LV+TA QWALDI+ RRPW+A+LYKTDK+EPLG
Sbjct: 163 MMLTSKPVKGKEAFSLGLVDGLMSPDDLVNTACQWALDIMGRRRPWIASLYKTDKLEPLG 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFARAQ +K+APNL HP+VCIDV+EAGVV+GPRAGL KE E + L++S+T KS
Sbjct: 223 EAREILKFARAQVQKRAPNLQHPLVCIDVIEAGVVAGPRAGLWKEVEASEGLIKSDTSKS 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGTSKVPGVTD GL PR VKKVAI+GGGLMGSGIATALILS+YP+ILKEVNE
Sbjct: 283 LIHVFFSQRGTSKVPGVTDCGLVPRHVKKVAIIGGGLMGSGIATALILSSYPIILKEVNE 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGI R++ANLQSRVKKGK+TQE FE T+SLL G LDYESFKDVDMVIEA++ENVSL
Sbjct: 343 KFLEAGINRIKANLQSRVKKGKLTQENFENTVSLLKGTLDYESFKDVDMVIEAVVENVSL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCPPHCILASNTSTIDLNLIGERT S+DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 403 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTKSQDRIVGAHFFSPAHVMPLLEIVRT 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTS QV+VD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA LVE G D+Y IDR
Sbjct: 463 KQTSAQVVVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLFLVEHGADVYQIDRV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATGMQFI+NFPERTYKSM+IP++QEDKRAGETTRKGF
Sbjct: 523 ITKFGMPMGPFRLVDLVGFGVAIATGMQFIQNFPERTYKSMLIPLLQEDKRAGETTRKGF 582
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD++ K SPDPE+K +IEKARS +GV++DPK KL EKDI+EM FFPVVNEACRV E
Sbjct: 583 YLYDDKCKPSPDPELKNYIEKARSFTGVSVDPKLVKLQEKDIIEMTFFPVVNEACRVLDE 642
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVK +DLDI++VMGMGFPPYRGGI+FWADSLGSKYIYS+LE+WS LYGEFFKPCA+LA
Sbjct: 643 GIAVKGSDLDISAVMGMGFPPYRGGILFWADSLGSKYIYSKLEKWSELYGEFFKPCAYLA 702
Query: 541 ERAGKGATL 549
RA KG L
Sbjct: 703 ARAAKGIPL 711
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829230|ref|XP_002882497.1| hypothetical protein ARALYDRAFT_478006 [Arabidopsis lyrata subsp. lyrata] gi|297328337|gb|EFH58756.1| hypothetical protein ARALYDRAFT_478006 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/560 (79%), Positives = 503/560 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAV+ P +L++TAR+WALDI+E R+PWV+++ KTDK+ LG
Sbjct: 164 MILTSKPVKAEEGHSLGLIDAVMPPAELLTTARRWALDIVERRKPWVSSVSKTDKLPSLG 223
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFAR Q +K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T KS
Sbjct: 224 EAREILKFARGQTQKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKS 283
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GLAPR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LIHVFFSQRGTAKVPGVTDRGLAPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 344 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 403
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 404 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 463
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 464 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 523
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 524 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 583
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEK+I+EM FFPVVNEACRVFAE
Sbjct: 584 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKEIIEMTFFPVVNEACRVFAE 643
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA +MGMGFPPYRGGIMFWADS+GSKYIYSRL+EWS YGEFFKPCAFLA
Sbjct: 644 GIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKTYGEFFKPCAFLA 703
Query: 541 ERAGKGATLVRNLKLFFSYL 560
ER KG L +K S L
Sbjct: 704 ERGSKGVPLSAPVKQASSRL 723
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 561 | ||||||
| TAIR|locus:2077542 | 725 | MFP2 "multifunctional protein | 0.987 | 0.764 | 0.797 | 4.3e-244 | |
| UNIPROTKB|O49809 | 725 | O49809 "Glyoxysomal fatty acid | 0.978 | 0.757 | 0.790 | 4e-241 | |
| UNIPROTKB|Q39659 | 725 | Q39659 "Glyoxysomal fatty acid | 0.978 | 0.757 | 0.795 | 3.6e-240 | |
| TAIR|locus:2119891 | 721 | AIM1 "ABNORMAL INFLORESCENCE M | 0.978 | 0.761 | 0.570 | 8e-172 | |
| UNIPROTKB|Q8W1L6 | 726 | MFP "Peroxisomal fatty acid be | 0.978 | 0.756 | 0.557 | 2.2e-169 | |
| TIGR_CMR|SPO_0772 | 698 | SPO_0772 "enoyl-CoA hydratase/ | 0.948 | 0.762 | 0.354 | 2.5e-81 | |
| UNIPROTKB|Q48GW3 | 721 | fadB "Fatty acid oxidation com | 0.950 | 0.739 | 0.319 | 2.7e-77 | |
| TIGR_CMR|SO_3088 | 707 | SO_3088 "fatty oxidation compl | 0.946 | 0.751 | 0.344 | 3.9e-76 | |
| TIGR_CMR|SO_0021 | 716 | SO_0021 "fatty oxidation compl | 0.946 | 0.741 | 0.333 | 3.1e-74 | |
| UNIPROTKB|Q47ZB7 | 787 | fadJ "Fatty oxidation complex, | 0.967 | 0.689 | 0.327 | 1.1e-73 |
| TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2352 (833.0 bits), Expect = 4.3e-244, P = 4.3e-244
Identities = 442/554 (79%), Positives = 498/554 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+ R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI FA+AQ K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T K
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEKDI+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA +MGMGFPPYRGGIMFWADS+GSKYIYSRL+EWS YGEFFKPCAFLA
Sbjct: 646 GIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLA 705
Query: 541 ERAGKGATLVRNLK 554
ER KG L +K
Sbjct: 706 ERGSKGVLLSAPVK 719
|
|
| UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)] | Back alignment and assigned GO terms |
|---|
Score = 2324 (823.1 bits), Expect = 4.0e-241, P = 4.0e-241
Identities = 434/549 (79%), Positives = 492/549 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +L++ AR+WALDI E R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFA+ Q R+QAPN+ HP++C++ VE G+VSG RAGL+KEA+ +++ +T K
Sbjct: 226 EAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++ KVAI+GGGLMGSGIATALILSNY VILKEVNE
Sbjct: 286 LIHVFFSQRGTTKVPGVTDRGLVPRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRVKKGKM++EKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LVE GTD YLID+A
Sbjct: 466 NHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
++KFGMPMGPFRL DLVGFGVAIAT QFIENFPERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 VSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD+RRKA PDPE+K +I+KARS+SG DPK KLSEK+I+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA + GMGFPPYRGGIMFWADS+GSKYIYS+LEEWS YGEFFKPCAFLA
Sbjct: 646 GIAVKAADLDIAGIFGMGFPPYRGGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLA 705
Query: 541 ERAGKGATL 549
ER KGA L
Sbjct: 706 ERGSKGAPL 714
|
|
| UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)] | Back alignment and assigned GO terms |
|---|
Score = 2315 (820.0 bits), Expect = 3.6e-240, P = 3.6e-240
Identities = 437/549 (79%), Positives = 491/549 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKP+KG+EAHSLGLVDA+V P +L++TAR+WAL+ILE RRPWV +L++TDK+E L
Sbjct: 166 MMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLA 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR+IF ARAQA+KQ PNL H I CID VE GVVSGPRAGL KEAE+FQ LL S+TCKS
Sbjct: 226 EARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKS 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+HIFFAQR T+KVPGVTDLGL PR++KKVAI+GGGLMGSGIATALILSNY V+LKEVN+
Sbjct: 286 LIHIFFAQRSTTKVPGVTDLGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVND 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI RVRANLQSRVKKG MT EKFEK+ISLL GVL+YESFKDVDMVIEA+IENVSL
Sbjct: 346 KFLQAGIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHC+LA+NTSTIDL LIGER S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
T+ QVIVDLLD+GK IKKTP+VVGNCTGFAVNRMFFPY+QAA LL E G D Y IDRA
Sbjct: 466 KHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVA AT QF++ FPERTYKSM+IP+MQEDK AGE+TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
Y+YD+ RKA P+PE+KK+IEKAR+ SGV++DPK KL EKDIVEMIFFPVVNEACRV AE
Sbjct: 586 YVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA VMGMGFP YRGG+MFWADSLGS YIYSRLEEWS YG FFKPC +LA
Sbjct: 646 GIAVKAADLDIAGVMGMGFPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLA 705
Query: 541 ERAGKGATL 549
ERA +GATL
Sbjct: 706 ERAVQGATL 714
|
|
| TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1670 (592.9 bits), Expect = 8.0e-172, P = 8.0e-172
Identities = 313/549 (57%), Positives = 412/549 (75%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+L SK + EE H LGL+DA+V P ++ST+R+WALDI E R+P++ +L++TDKI L
Sbjct: 163 MILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLS 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR I K +R A+K APN+ CI+V+E G++ G +G+ KEAE F++L+ S+T K
Sbjct: 223 EARAILKNSRQLAKKIAPNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKG 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH+FFAQR TSKVP VTD+GL PR +KKVA++GGGLMGSGIATAL+LSN V+LKE+N
Sbjct: 283 LVHVFFAQRATSKVPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINS 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL GI V AN++S V +GK+TQ+K K +SL GVLDY F DVDMVIEA+IEN+ L
Sbjct: 343 EFLMKGIKSVEANMKSLVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQ IF ++EK C PHCILASNTSTIDL++IGE+T SKDRIVGAHFFSPAH+MPLLEIVR+
Sbjct: 403 KQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRS 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
TS QVI+DL+ +GK IKK P+VVGNC GFAVNR FFPY+QAA +L G DL+ ID
Sbjct: 463 KNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
IT FG+P+GPF+L DL G G+ +A G + + + +R ++S + ++ + R G+ +G+
Sbjct: 523 ITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGY 582
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
Y+Y++ K PDP V +EK+R ++ + K +++K+IVEMI FPVVNEACRV E
Sbjct: 583 YIYEKGSKPKPDPSVLSIVEKSRKLTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDE 642
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
G+ ++A+DLDIASV+GM FP YRGGI+FWAD++G KYIY RL++ S YG FFKP +L
Sbjct: 643 GVVIRASDLDIASVLGMSFPSYRGGIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLE 702
Query: 541 ERAGKGATL 549
ERA G L
Sbjct: 703 ERAMNGMLL 711
|
|
| UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1647 (584.8 bits), Expect = 2.2e-169, P = 2.2e-169
Identities = 306/549 (55%), Positives = 414/549 (75%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MML SK + +E GLVDA+ +P++L+ +R WAL+I +R+PW+ +L +TD++ L
Sbjct: 163 MMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLS 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR + AR QA+K A NL C+DV+E GV+ G AG+ KEA+ F++L+ S T K+
Sbjct: 223 EARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKA 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH FFAQR T+KVPGVTD+ L PR+++KVA++GGGLMGSGIATAL++SN V+LKEVN
Sbjct: 283 LVHAFFAQRLTTKVPGVTDVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNP 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL+ G + ANL+ VK+G +T++K K +SLL G LDY FKDVDMVIEA+IE + L
Sbjct: 343 QFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQ IF+DLEK CPPHCILA+NTSTIDLN++GE+T S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQ I+DL+ +GK IKK P+VVGNCTGFAVNR FFPYTQ + LLV G D++ IDR
Sbjct: 463 EKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+ FGMPMGPF+L DL G+GVA+A + F R S ++ +M ++ R G++ KG+
Sbjct: 523 ISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY 582
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLY++ K PDP V+ I++ R + K LS++DI+EMIFFPVVNEACRV E
Sbjct: 583 YLYEKGGKPKPDPSVQVVIDEYRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDE 642
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
+ ++A+DLDIAS++GMGFP +RGG++FWAD++G+ YI+S+L +W+ +YG+FFKP ++L
Sbjct: 643 NVVIRASDLDIASILGMGFPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLE 702
Query: 541 ERAGKGATL 549
+RA + L
Sbjct: 703 DRAKRSLPL 711
|
|
| TIGR_CMR|SPO_0772 SPO_0772 "enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 197/555 (35%), Positives = 296/555 (53%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVA--PNQL-VSTARQWALDILEHRRPWVATLYKTDKIE 57
M+ T + V+ +EA LG++D V P ++ +S R+ LD RRP V +
Sbjct: 151 MITTGRHVRADEALRLGVIDRVAEGEPREIGLSYLRE-LLDEGAPRRP-VGEM------- 201
Query: 58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGP-RAGLQKEAEDFQKLLRSE 116
P + A RK L+ P + V+A + AGL++E E F +L+ S+
Sbjct: 202 PAPAPVDFDAIYAAVLRKGRGQLS-PATAVRAVQAACEAESFAAGLKRERELFMELMNSD 260
Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILK 176
+ L+H FFA R K+P + G+APR + + ++GGG MG+GIATA +LS V +
Sbjct: 261 QREGLIHAFFADRAVGKLPELE--GVAPRPLAAIGVIGGGTMGAGIATAALLSGLSVTML 318
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK-TISLLTGVLDYESFKDVDMVIEAII 235
E+ + EA GR+ NL +K+GK+T ++F+ T LT +DY++ D D+VIEA+
Sbjct: 319 EMTPEAAEAAKGRIEGNLSGALKRGKLTAQQFDNLTTKALTLAIDYDALADADLVIEAVF 378
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
E++ +K+Q+F L+ C P +LASNTS +D+N I T ++G HFFSPAHVM LL
Sbjct: 379 EDMEVKKQVFTKLDAVCKPGAVLASNTSYLDINQIAAVTSRPQDVLGLHFFSPAHVMKLL 438
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E+V +QT+P V +GK++ K + G C GF NR+ Y A ++ G Y
Sbjct: 439 EVVIADQTAPDVAATGFALGKRLGKVSVRAGVCDGFIGNRILSVYRTCADHMILDGASPY 498
Query: 356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQF-IENFPERTYKSMIIPIMQEDKRAGE 414
ID A+ +FG MGPF +ADL G + A + E R S + E G+
Sbjct: 499 QIDEALEEFGFAMGPFAVADLAGLDIGWAVRKRKRAEGLDPRARDSAYADKLCEAGHFGQ 558
Query: 415 TTRKGFYLYDERRKAS-PDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473
T KG+Y Y KA P+PEV IE R+ G+ P+ S+ +IV +VNE
Sbjct: 559 KTGKGYYDYAAGAKARVPNPEVLPLIEAERAQQGIT--PR--AFSKDEIVRRYMAAMVNE 614
Query: 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF 533
A +V EGIA + D+D+ + G GFP YRGG + WAD G + + ++ W++ F+
Sbjct: 615 AAKVVGEGIARRPLDVDVTLLYGYGFPRYRGGPLKWADMQGLPELLADIKRWAAEDAYFW 674
Query: 534 KPCAFLAERAGKGAT 548
+P L + +G T
Sbjct: 675 QPAPLLEQLVAEGRT 689
|
|
| UNIPROTKB|Q48GW3 fadB "Fatty acid oxidation complex subunit alpha" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 176/551 (31%), Positives = 289/551 (52%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLY-KTDKIEPLGEA 62
+ K E+A +G VDAVVAP +L + A + + A K DK++ L
Sbjct: 170 SGKESSAEDALKVGAVDAVVAPEKLQAAALDLIQRAISGEFDYKAKRQPKLDKLK-LNAI 228
Query: 63 REIFKFARAQ---ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCK 119
++ F A+ A + PN P+ I ++ G L+ EA F K+ ++ +
Sbjct: 229 EQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEIEAAGFVKMAKTSAAQ 288
Query: 120 SLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVN 179
SL+ +F + K D + VK+ A+LG G+MG GIA + P+++K++
Sbjct: 289 SLIGLFLNDQELKKKAKGYDA--VAKDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIR 346
Query: 180 EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239
E+ ++ G+ L R++KG++T K + ++ + L Y F +VD+V+EA++EN
Sbjct: 347 EEAIQLGLNEASKLLGGRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPK 406
Query: 240 LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVR 299
+KQ + A++E H ILASNTSTI ++L+ + + VG HFF+P H+MPL+E++R
Sbjct: 407 VKQAVLAEVEANVGEHTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 466
Query: 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDR 359
++S + + + +K+ K PIVV +C GF VNR+ FPY LV G D ID+
Sbjct: 467 GEKSSEEAVATTVAYARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDK 526
Query: 360 AITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTR 417
+ KFG PMGP L D+VG E FP+R + ++ + E KR G+
Sbjct: 527 VMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSVVDALYEAKRLGQKNG 586
Query: 418 KGFYLYDERRKASPDPEVKKFIEKA--RSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475
KGFY Y+ +K P KK + A + + + + ++S++DI+ + P+ E
Sbjct: 587 KGFYAYETDKKGKP----KKVNDPAVLDVLKPIVYEQR--EVSDEDIINWMMIPLCLETV 640
Query: 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKP 535
R +GI AA+ D+ + G+GFPP+RGG + + DS+G + ++++ L G ++P
Sbjct: 641 RCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADQYAEL-GALYQP 699
Query: 536 CAFLAERAGKG 546
A L E A KG
Sbjct: 700 TAKLREMASKG 710
|
|
| TIGR_CMR|SO_3088 SO_3088 "fatty oxidation complex, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 191/554 (34%), Positives = 288/554 (51%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLT K ++ ++A +GLV+ VV L+ TA + AL + +P +L +E G
Sbjct: 167 MMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKQIAKPVKKSLVN-QLLEGTG 225
Query: 61 EAREIF--KFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
R I + A+ A+K N P ID V G+ G + GL+ EA F +L+ S+
Sbjct: 226 FGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKES 285
Query: 119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILKE 177
++L IFFA K G G PR+VKK ILGGGLMG GIA+ + P +K+
Sbjct: 286 EALRSIFFATTEMKKETGAE--GATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKD 343
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
+NEK L + L VK+ MT + ++L+T +Y+ KD D+V+EA+ E+
Sbjct: 344 INEKGLSNALSYAYKLLDKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFED 403
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
++LK Q+ D+E+ C H I ASNTS++ + I + + ++G H+FSP MPL+E+
Sbjct: 404 LALKHQMVKDIERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEV 463
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDLYL 356
+ +TSP+ I + +K KTPIVV + GF VNR+ Y +AA LL+E G +
Sbjct: 464 IAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLE-GQSVEH 522
Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETT 416
+D+A+ KFG P+GP L D VG V + ER + D R G
Sbjct: 523 LDKALVKFGFPVGPITLLDEVGIDVGAKISPILEKELGERFKAPAAFDKLLSDDRKGRKN 582
Query: 417 RKGFYLYDERRKASPDPEVKKFI-EKARSMSGV--AIDPKFAKLSEKDIVEMIFFPVVNE 473
KGFY Y K KK + E + G+ +D + + ++E+ +V+M+ NE
Sbjct: 583 GKGFYQYGAASK-------KKAVDETVYGVLGIKPGVDKEMSAVAERCVVQML-----NE 630
Query: 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF 533
A R GI D DI ++ G+GFPP+ GG + D+LG+ + LE + + YG+ F
Sbjct: 631 AVRCLDAGIIASPRDGDIGAIFGIGFPPFLGGPFHYIDTLGADNLVKILERYQTQYGDRF 690
Query: 534 KPCAFLAERAGKGA 547
+PC L A + A
Sbjct: 691 EPCQRLKAMAAEKA 704
|
|
| TIGR_CMR|SO_0021 SO_0021 "fatty oxidation complex, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 186/557 (33%), Positives = 283/557 (50%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG--- 60
T + E+A +G VDAVVAP L A Q D + + W A + K+ PL
Sbjct: 169 TGNEQRAEDALKVGAVDAVVAPEALEVAAIQMLKDAVAEKLDWQARRQR--KLSPLTLPK 226
Query: 61 -EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
EA F A+ A + P+ ++VVE G LQ E + F KL +++
Sbjct: 227 LEAMMSFTTAKGMVFSVAGKHYPAPMAAVNVVEQAATKGRSDALQIEHQAFIKLAKTDVA 286
Query: 119 KSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
K+L+ IF +G +K G LA + V A+LG G+MG GIA P+++
Sbjct: 287 KALIGIFLNDQFVKGKAKKAGK----LA-KAVNSAAVLGAGIMGGGIAYQSASKGTPIVM 341
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++ + L+ G+ L ++V +G+ T EK K ++ +T L+Y K D+V+EA++
Sbjct: 342 KDIAQPALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPALEYAPVKHADVVVEAVV 401
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
E+ +K Q+ A++E+Y I+ASNTSTI ++L+ + +R G HFF+P H MPL+
Sbjct: 402 EHPKVKAQVLAEVEQYVSEDAIIASNTSTISISLLAKSMKKPERFCGMHFFNPVHKMPLV 461
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E++R +S + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D
Sbjct: 462 EVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFA 521
Query: 356 LIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM--IIPIMQEDKRA 412
ID+ + K FG PMGP L D+VG E FP+R KS I +M E+KR
Sbjct: 522 AIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRL 581
Query: 413 GETTRKGFYLY--DERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPV 470
G+ KGFY Y D R K D + + E ++ G + K E I+ P+
Sbjct: 582 GQKNGKGFYAYSVDSRGKPKKDVDPTSY-ELLKAAFG---EQKAFDADE--IIARTMIPM 635
Query: 471 VNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYG 530
+ E R EGI A+ D+ V G+GFPP+RGG+ + D++G + ++++ L G
Sbjct: 636 IIETVRCLEEGIVASPAEADMGLVYGLGFPPFRGGVFRYLDTMGVANFVALADKYAHLGG 695
Query: 531 EFFKPCAFLAERAGKGA 547
+ A A A G+
Sbjct: 696 LYQVTDAMRALAANNGS 712
|
|
| UNIPROTKB|Q47ZB7 fadJ "Fatty oxidation complex, alpha subunit" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 183/559 (32%), Positives = 287/559 (51%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT-DKI-EP 58
MMLT K ++ ++A GLVD VV + L++ A A+ + + + V DK+ E
Sbjct: 228 MMLTGKQLRAKQALKSGLVDDVVPSSVLLTVAEDLAISLRQRGKKTVKRKQGLMDKLLEN 287
Query: 59 LGEAREIFKFARAQAR---KQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS 115
R++ + +AQ K N P ID + G+ S P G + EAE F L+ S
Sbjct: 288 NAVGRKVV-YQQAQKTVLAKTQGNYPAPAKIIDCIRTGIESSPEKGYRVEAEHFADLVMS 346
Query: 116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIA-TALILSNYPVI 174
+ L +FFA K GV D+ P ++ K +LGGGLMG GIA +N PV
Sbjct: 347 DESAQLRQLFFATTAMKKEQGVADV--MPEKMTKAGVLGGGLMGGGIAFVTATKANMPVR 404
Query: 175 LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
+K+++ K + + L +VK+ + + +K ++++TG ++Y FK +D+V+EA+
Sbjct: 405 VKDISHKGIGQALKYSYQILNKKVKRRFLLNSEMQKQLAMITGSVEYTGFKALDIVVEAV 464
Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
E+++LKQ + A++E I ASNTS++ + I + ++G H+FSP MPL
Sbjct: 465 FEDLTLKQNMVAEVEAQGHDKTIFASNTSSLPIGKIATNAKRPENVIGLHYFSPVDKMPL 524
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
+EI+ ++TS Q I + + KK KTPIVV + GF VNR+ PY A +L+ G +
Sbjct: 525 VEIIPHDKTSDQTISNTVAFAKKQGKTPIVVKDKAGFYVNRILAPYMNEAAILLLAGEPI 584
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGE 414
ID+A+ KFG P+GP +L D VG V G + ER + D R G+
Sbjct: 585 DKIDKALVKFGFPVGPMQLLDEVGVDVGAKIGPILQADLGERFAAPAAFDKLLADGRLGK 644
Query: 415 TTRKGFYLYDERRKASPDPEVKKFIEKARSM------SGVAIDPKFAKLSEKDIVEMIFF 468
+KGFY Y++ K I+ S + I P LS +I + +
Sbjct: 645 KVKKGFYQYEKPTFTKNLQNTFKGIKSGHKQVDETIYSLLNIKP-MGSLSAVEISKRCTY 703
Query: 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 528
++NEA R EGI A D DI ++ G+GFPP+ GG + + D +G+K + ++L +W+
Sbjct: 704 MMLNEAARCVDEGIVRNARDGDIGAIFGIGFPPFLGGPLRYIDKIGAKSVVAQLSQWAEQ 763
Query: 529 YGEFFKPCAFLAERAGKGA 547
+GE + PC L A A
Sbjct: 764 HGERYTPCEALITMAENDA 782
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O49809 | MFPA_BRANA | 1, ., 1, ., 1, ., 3, 5 | 0.7905 | 0.9786 | 0.7572 | N/A | no |
| Q39659 | MFPA_CUCSA | 1, ., 1, ., 1, ., 3, 5 | 0.7959 | 0.9786 | 0.7572 | N/A | no |
| Q9ZPI5 | MFP2_ARATH | 1, ., 1, ., 1, ., 3, 5 | 0.7928 | 0.9982 | 0.7724 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 561 | |||
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 1e-125 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 1e-117 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 1e-103 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 1e-102 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 3e-94 | |
| COG1250 | 307 | COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li | 1e-92 | |
| pfam02737 | 180 | pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas | 2e-74 | |
| PRK05808 | 282 | PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge | 8e-70 | |
| PLN02545 | 295 | PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge | 5e-61 | |
| PRK07819 | 286 | PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge | 3e-54 | |
| PRK08268 | 507 | PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena | 2e-51 | |
| PRK06035 | 291 | PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas | 2e-51 | |
| TIGR02279 | 503 | TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy | 3e-50 | |
| PRK09260 | 288 | PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge | 5e-47 | |
| PRK07530 | 292 | PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge | 9e-47 | |
| PRK06130 | 311 | PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge | 3e-42 | |
| PRK08293 | 287 | PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge | 9e-37 | |
| PRK08269 | 314 | PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge | 4e-22 | |
| PRK06129 | 308 | PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas | 2e-20 | |
| pfam00725 | 97 | pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, | 3e-20 | |
| PRK07531 | 495 | PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA | 2e-13 | |
| PRK07066 | 321 | PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge | 1e-07 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 2e-07 | |
| PRK08268 | 507 | PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena | 2e-06 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 4e-05 | |
| TIGR02279 | 503 | TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy | 1e-04 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 4e-04 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 5e-04 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 8e-04 | |
| pfam00725 | 97 | pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, | 0.001 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 0.001 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 0.002 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 0.002 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-125
Identities = 201/574 (35%), Positives = 294/574 (51%), Gaps = 62/574 (10%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL-DILEHRR-PWVATLYKTDKIEP 58
M+LT K ++ ++A LGLVD VV + L+ A + A R P L + + P
Sbjct: 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGN---P 223
Query: 59 LGEAREIFKFARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
LG A +FK AR + + N P +DVV G+ G +G + EA F +L +
Sbjct: 224 LGRAL-LFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPE 282
Query: 118 CKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIA--TALILSNYPVIL 175
+L IFFA K G PR V KV +LGGGLMG GIA TA + PV +
Sbjct: 283 SAALRSIFFATTEMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTA-TKAGLPVRI 338
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++N + + + L +VK+ + + +K ++L++G DY FK D+VIEA+
Sbjct: 339 KDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVF 398
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
E+++LKQQ+ A++E+ C PH I ASNTS++ + I ++++G H+FSP MPL+
Sbjct: 399 EDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLV 458
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDL 354
E++ +TS + I + + KK KTPIVV + GF VNR+ PY +AA LL+E G +
Sbjct: 459 EVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPI 517
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQE------ 408
ID A+ KFG P+GP L D VG V + IIPI++
Sbjct: 518 EHIDAALVKFGFPVGPITLLDEVGIDVG-----------------TKIIPILEAALGERF 560
Query: 409 -----------DKRAGETTRKGFYLYDERRKAS---PDPEVKKFIEKARSMSGVAIDPKF 454
D R G +GFYLY ++ K S D V + I P+
Sbjct: 561 SAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLL---------GITPQ- 610
Query: 455 AKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLG 514
++LS +I E ++NEA R EGI A D DI +V G+GFPP+ GG + DSLG
Sbjct: 611 SRLSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLG 670
Query: 515 SKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548
+ + + LE ++ YG+ F PC L E A +G +
Sbjct: 671 AGEVVAILERLAAQYGDRFTPCERLVEMAERGES 704
|
Length = 708 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 363 bits (935), Expect = e-117
Identities = 192/564 (34%), Positives = 292/564 (51%), Gaps = 35/564 (6%)
Query: 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG- 60
+ K V+ E+A +G VDAVVAP +L A + + W A + K+EPL
Sbjct: 167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKA--RRQPKLEPLKL 224
Query: 61 ---EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
EA F A+ ++A + P+ + +EA G L+ EA+ F KL ++
Sbjct: 225 SKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTN 284
Query: 117 TCKSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPV 173
++LV IF +G +K L + VK+ A+LG G+MG GIA PV
Sbjct: 285 VARALVGIFLNDQYVKGKAK-----KLAKDAKPVKQAAVLGAGIMGGGIAYQSASKGVPV 339
Query: 174 ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 233
I+K++N+K L+ G+ L +V++GK+ K +S + LDY F+ VD+V+EA
Sbjct: 340 IMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEA 399
Query: 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP 293
++EN +K + A++E+ ILASNTSTI ++L+ + + G HFF+P H MP
Sbjct: 400 VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP 459
Query: 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTD 353
L+E++R +TS + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D
Sbjct: 460 LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGAD 519
Query: 354 LYLIDRAITK-FGMPMGPFRLADLVGFGVAIATG------MQFIENFPERTYKSM--IIP 404
ID+ + K FG PMGP L D+VG I T M E FP+R K I
Sbjct: 520 FRQIDKVMEKQFGWPMGPAYLLDVVG----IDTAHHAQAVMA--EGFPDRMKKDYRDAID 573
Query: 405 IMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVE 464
++ E KR G+ KGFY Y+E +K P EV + + PK + S+++I+
Sbjct: 574 VLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVD---PAVYELLAPVVQPK-REFSDEEIIA 629
Query: 465 MIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEE 524
+ P++NE R EGI A+ D+A V G+GFPP+RGG + D+LG + ++
Sbjct: 630 RMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADK 689
Query: 525 WSSLYGEFFKPCAFLAERAGKGAT 548
++ L G ++ L E A G +
Sbjct: 690 YAHL-GPLYQVPEGLREMAANGES 712
|
Length = 715 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 325 bits (835), Expect = e-103
Identities = 177/556 (31%), Positives = 286/556 (51%), Gaps = 23/556 (4%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG--- 60
+ K + E+A +G VDAVV ++L + A Q D + + W A + K+EPL
Sbjct: 169 SGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAK--RQPKLEPLKLSK 226
Query: 61 -EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
EA F A+ + A P+ P+ + +E G L+ EA+ F KL ++
Sbjct: 227 IEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEA 286
Query: 119 KSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
K+L+ +F +G +K + VK+ A+LG G+MG GIA P+++
Sbjct: 287 KALIGLFLNDQYVKGKAKK-----ADKIAKDVKQAAVLGAGIMGGGIAYQSASKGTPIVM 341
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++N+ L+ G+ L +V++G++T K ++ +T L Y F +VD+V+EA++
Sbjct: 342 KDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
EN +K + A++E++ ILASNTSTI ++L+ + + G HFF+P H MPL+
Sbjct: 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLV 461
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E++R ++S + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D
Sbjct: 462 EVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFV 521
Query: 356 LIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM--IIPIMQEDKRA 412
ID+ + K FG PMGP L D+VG E FP+R K I + E KR
Sbjct: 522 RIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRL 581
Query: 413 GETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVN 472
G+ KGFY Y+ +K P V + + + + + +++I+ + P++N
Sbjct: 582 GQKNGKGFYAYEADKKGKPKKLVDSSVLE---LLKPVVYEQRD-FDDEEIIARMMIPMIN 637
Query: 473 EACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF 532
E R EGI AA+ D+ V G+GFPP+RGG + DS+G + ++++ L G
Sbjct: 638 ETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYAEL-GAL 696
Query: 533 FKPCAFLAERAGKGAT 548
++ A L E A G +
Sbjct: 697 YQVTAKLREMAKNGQS 712
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-102
Identities = 190/552 (34%), Positives = 271/552 (49%), Gaps = 22/552 (3%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP--WVATLYKTDKIEP 58
M+LT K ++ ++A LGLVD VV + L+ TA + AL R+P L + P
Sbjct: 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGT---P 218
Query: 59 LGEAREIFKFARAQ-ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
LG A +F A + A+K N +DVV G+ G + GL EA F +L+ +
Sbjct: 219 LGRAL-LFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPE 277
Query: 118 CKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILK 176
+L IFFA K G P ++KKV ILGGGLMG GIA+ + PV +K
Sbjct: 278 SAALRSIFFATTEMKKETGSDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIK 334
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236
++N + + + L VK+ MT + + ++L+TG DY FKDVD+VIEA+ E
Sbjct: 335 DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394
Query: 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE 296
+++LK Q+ D+E+ C H I ASNTS++ + I + ++G H+FSP MPL+E
Sbjct: 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVE 454
Query: 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYL 356
++ TS Q I + + KK KTPIVV + GF VNR+ PY A L+ G +
Sbjct: 455 VIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEH 514
Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETT 416
ID+A+ KFG P+GP L D VG V ER + + D R G
Sbjct: 515 IDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKN 574
Query: 417 RKGFYLYDERRKASP-DPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475
KGFYLY K D V + I P + E ++NEA
Sbjct: 575 GKGFYLYGAATKKKAVDESVYGLL---------GIKPG-VDKEASAVAERCVMLMLNEAV 624
Query: 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKP 535
R EG+ D DI ++ G+GFPP+ GG + D+LG+ + LE + YG+ F P
Sbjct: 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTP 684
Query: 536 CAFLAERAGKGA 547
C L A +
Sbjct: 685 CQRLVAMAAEKQ 696
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 3e-94
Identities = 176/567 (31%), Positives = 276/567 (48%), Gaps = 35/567 (6%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPL 59
MMLT K ++ + A +G+VD +V P + A + ++ LE A K+
Sbjct: 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSIN 233
Query: 60 GEA-----------------REIFKFARAQARKQAPNL-THPIVCIDVVEAGVVSGPRAG 101
+ ++++K A + KQ L P+ +DVV G GP AG
Sbjct: 234 RDKGLVHKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAG 293
Query: 102 LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSG 161
+ E++ F +L + K+L+ +F Q K G R VK +A+LG GLMG+G
Sbjct: 294 YEAESKAFGELSMTFESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAG 349
Query: 162 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221
IA + +LK+ L+ G +V L +VK+ K+T + + +S LT LDY
Sbjct: 350 IAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409
Query: 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIV 281
FK+ DMVIEA+ E++SLK ++ ++E PPHCI+ASNTS + + I + ++++
Sbjct: 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVI 469
Query: 282 GAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYT 341
G H+FSP M LLEI+ + TS + + +G K K IVV + GF R P
Sbjct: 470 GMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPML 529
Query: 342 QAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM 401
L++ G D +D+ TKFG P+G LAD VG VA + F ER +
Sbjct: 530 AEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGER-FGGG 588
Query: 402 IIPIMQEDKRAGETTR---KGFYLYDERRKASPD--PEVKKFIEKARSMSGVAIDPKFAK 456
++ E +AG R KG ++Y E +K S + + + + + + PK
Sbjct: 589 SAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYK------LPPKAEV 642
Query: 457 LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSK 516
S +DI + VNEA EGI ++ DI +V G+GFPP+ GG + D G+
Sbjct: 643 SSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGAD 702
Query: 517 YIYSRLEEWSSLYGEFFKPCAFLAERA 543
+ ++E++++ YG F PC L + A
Sbjct: 703 KLVDKMEKYAAAYGVQFTPCQLLLDHA 729
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 1e-92
Identities = 107/284 (37%), Positives = 168/284 (59%), Gaps = 4/284 (1%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+KKVA++G G+MG+GIA L+ Y V+LK+++ + LE + + NL+ V+KGK+T+E
Sbjct: 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
+ + ++ +T D + KD D+VIEA++E++ LK+Q+FA+LE P ILASNTS++
Sbjct: 63 EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ + E +R +G HFF+P +MPL+E++R +TS + + +++ KKI KTP+VV
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182
Query: 327 NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384
+ GF VNR+ A L+E G ID A+ G+PMGPF LADL+G V +
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242
Query: 385 TGMQFIENFPERTYKSM--IIPIMQEDKRAGETTRKGFYLYDER 426
E + Y ++ + E R G + KGFY Y
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGE 286
|
Length = 307 |
| >gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 233 bits (598), Expect = 2e-74
Identities = 69/180 (38%), Positives = 115/180 (63%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
KVA++G G MG+GIA + V+L +++E+ LE R+ +L V+KG++T+E
Sbjct: 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60
Query: 209 EKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268
+ ++ ++ D D D+VIEA+ EN+ LK+++FA+L+ PP ILASNTS++ +
Sbjct: 61 DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120
Query: 269 LIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328
+ T +R +G HFF+P +MPL+E+VR +TSP+ + ++ + KKI KTP+VV +
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180
|
This family also includes lambda crystallin. Length = 180 |
| >gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 8e-70
Identities = 103/283 (36%), Positives = 160/283 (56%), Gaps = 9/283 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
++K+ ++G G MG+GIA ++ Y V++ ++++ ++ G+ + +L VKKGKMT+
Sbjct: 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA 62
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
E ++ +TG D + KD D+VIEA EN+ LK++IFA L++ P ILA+NTS++
Sbjct: 63 DKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ + T D+++G HFF+P VM L+EI+R TS + + KKI KTP+ V
Sbjct: 123 ITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK 182
Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGVAI 383
N GF VNR+ P +A F+L E ID + K G P+GP LADL+G +
Sbjct: 183 NAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGM-KLGCNHPIGPLALADLIGLDTCL 241
Query: 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
A E F + Y+ P++++ AG RK GFY Y
Sbjct: 242 AIMEVLYEGFGDSKYRPC--PLLRKMVAAGWLGRKTGRGFYDY 282
|
Length = 282 |
| >gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 5e-61
Identities = 96/296 (32%), Positives = 153/296 (51%), Gaps = 15/296 (5%)
Query: 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT 204
+KKV ++G G MGSGIA + V L + + L G+ + ++L VKKGKM+
Sbjct: 2 AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMS 61
Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
QE+ + T+ + + E +D D +IEAI+E+ LK+++F++L++ C P ILASNTS+
Sbjct: 62 QEEADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSS 121
Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
I + + T +++G HF +P +M L+EI+R TS +V + ++ KT +
Sbjct: 122 ISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVC 181
Query: 325 VGNCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAITKFG--MPMGPFRLADLVG 378
+ GF VNR+ P AF + G D ID + K G PMGP LAD +G
Sbjct: 182 SQDYPGFIVNRILMPMINEAFYALYTGVASKED---IDTGM-KLGTNHPMGPLHLADFIG 237
Query: 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKASP 431
++ E + Y+ P++ + AG RK G Y YD +++ P
Sbjct: 238 LDTCLSIMKVLHEGLGDSKYR--PCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDP 291
|
Length = 295 |
| >gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 3e-54
Identities = 98/289 (33%), Positives = 153/289 (52%), Gaps = 19/289 (6%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+++V ++G G MG+GIA + V++ E E+ AG R+ +L+ V +GK+T+
Sbjct: 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER 64
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCP-PHCILASNTSTI 265
+ + ++ L D F D +VIEA++E+ ++K +IFA+L+K P +LASNTS+I
Sbjct: 65 ERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI 124
Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLD-IGKKIKKTPIV 324
+ + T R++G HFF+P V+PL+E+V T TS + + + K +
Sbjct: 125 PIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVR 184
Query: 325 VGNCTGFAVNRMFFPYTQAAFLLVERG----TDLYLIDRAITK-FGMPMGPFRLADLVGF 379
+ +GF VN + PY +A +VE G D ID+A+ PMGP RL+DLVG
Sbjct: 185 AQDRSGFVVNALLVPYLLSAIRMVESGFATAED---IDKAMVLGCAHPMGPLRLSDLVGL 241
Query: 380 GV--AIATGMQFIENFPERTYKSMIIPI---MQEDKRAGETTRKGFYLY 423
AIA M E F E Y P+ M E G+ + +GFY Y
Sbjct: 242 DTVKAIADSM--YEEFKEPLYAPP--PLLLRMVEAGLLGKKSGRGFYTY 286
|
Length = 286 |
| >gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 2e-51
Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 7/299 (2%)
Query: 143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK 202
A + VA++G G MG+GIA + + V+L + A + A L V+KGK
Sbjct: 3 ALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGK 62
Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262
+T E+ + ++ L V D D+V+EAI+E + +KQ +FA LE P CILA+NT
Sbjct: 63 LTAEQADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNT 122
Query: 263 STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
S++ + I +R+ G HFF+P +M L+E+V T P V L + + KTP
Sbjct: 123 SSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182
Query: 323 IVVGNCTGFAVNRMFFP-YTQAAFLLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFG 380
+ + GF VNR P YT+A +L E D ID + + G MGPF L DL+G
Sbjct: 183 VRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLD 242
Query: 381 VAIATGMQFIEN--FPERTYK-SMIIPIMQEDKRAGETTRKGFYLY-DERRKASPDPEV 435
V A M+ + + E ++ S+I + R G + +GFY Y D ++ +
Sbjct: 243 VNHAV-MESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAP 300
|
Length = 507 |
| >gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-51
Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 17/291 (5%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV---RANLQSRVKKGKM 203
+K + ++G G+MG GIA + Y V + +V+E+ L+ + + L++ V+KGKM
Sbjct: 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62
Query: 204 TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
++++ + ++ + YES D D ++EA+ E + LK+++FA+LE+ P I+ASNTS
Sbjct: 63 SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122
Query: 264 TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323
I + I KDR +G H+F+PA VM L+E+VR TS + +++ KKI K PI
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182
Query: 324 VVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITK--FGMPMGPFRLADLVGFGV 381
V + GF R + A E G + K FG PMGPF L D++G
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGIDT 242
Query: 382 A--IATGM-------QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
IA + QFI P + K M++ DK+ ++ G++ Y
Sbjct: 243 VYHIAEYLYEETGDPQFI---PPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290
|
Length = 291 |
| >gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 3e-50
Identities = 112/327 (34%), Positives = 163/327 (49%), Gaps = 11/327 (3%)
Query: 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ 205
V VA++G G MG+GIA + + V+L ++ + L I + A L S V KGK+T
Sbjct: 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTA 63
Query: 206 EKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265
E+ E+T+ L V D + D +VIEAI+EN+ +K+ +FA LE+ CP I+ASNTS++
Sbjct: 64 EECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSL 123
Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
+ I +R+ G HFF+PA VM L+E+V T+ +V L + K P+
Sbjct: 124 SITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHC 183
Query: 326 GNCTGFAVNRMFFP-YTQAAFLLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFGVAI 383
+ GF VNR+ P Y +A L E+ ++D A+ G PMGPF L DL+G V
Sbjct: 184 HSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243
Query: 384 A-TGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY-DERRKASPDPEVKKF 438
A T F + +R + + QE AG RK G Y Y +E P V
Sbjct: 244 AVTCSVFNAFWQDRRFLPS--LVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDS 301
Query: 439 IEKARSMSGV--AIDPKFAKLSEKDIV 463
++ G A P A+L I
Sbjct: 302 FSPRVTVVGDIGAAAPLLARLEAAGIK 328
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503 |
| >gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 5e-47
Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 9/286 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
++K+ ++G G+MG GIA +S + L ++ ++ LE+ + + + V +GK+T+
Sbjct: 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60
Query: 207 KFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265
+ ++ L+ LD + D D+VIEA+ E + LK+ +F + + P C +A+NTST+
Sbjct: 61 ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120
Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
I T +R++ HFF+P H M L+E++R +TS + + ++ +++ K +VV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180
Query: 326 GNCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380
GF +R+ AF +++ G D ID+AI PMGP L DLVG
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAED---IDKAIRLGLNFPMGPLELGDLVGLD 237
Query: 381 VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426
+ E E+ + ++ + R G T +G Y Y R
Sbjct: 238 TRLNNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283
|
Length = 288 |
| >gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 9e-47
Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 11/284 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+KKV ++G G MG+GIA L+ Y V+L +V+ LEAG+ + NL +V KGK+++E
Sbjct: 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
++ ++ D E D D+VIEA E+ ++K++IFA L P ILA+NTS+I
Sbjct: 64 ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS 123
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ + T +R +G HF +P VM L+E++R T + K+ KT V
Sbjct: 124 ITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAE 183
Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGVAI 383
+ F VNR+ P +A + L E + ID A+ K G PMGP LAD +G +
Sbjct: 184 DFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAM-KLGANHPMGPLELADFIGLDTCL 242
Query: 384 ATGMQFI-ENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
+ MQ + + + Y+ P++ + AG RK GFY Y
Sbjct: 243 SI-MQVLHDGLADSKYRP--CPLLVKYVEAGWLGRKTGRGFYDY 283
|
Length = 292 |
| >gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-42
Identities = 98/320 (30%), Positives = 159/320 (49%), Gaps = 36/320 (11%)
Query: 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR--VKKGKM 203
++ +AI+G G MGSGIA V+L +V E LE R R ++ V
Sbjct: 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALE----RARGVIERALGVYAPLG 58
Query: 204 TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
I + G+ + D+VIEA+ E + LK+ +FA L+ C P I A+NTS
Sbjct: 59 IASAGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTS 116
Query: 264 TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323
+ + I + +R VG HFF+PA V+PL+E+VR ++TSPQ + + + + I K P+
Sbjct: 117 GLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPV 176
Query: 324 VVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAITKFGMPM-----GPFRLADL 376
+V + GF NR+ + A L+E+G ID + K+ + + GP D+
Sbjct: 177 LVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVV-KWSLGIRLALTGPLEQRDM 235
Query: 377 VGFGV--AIATGM-QFIENFPERTYKSMIIPIMQEDKRAGE---TTRKGFYLYD-ERRKA 429
G V A+A+ + Q +EN ++ P+++E AGE + +GFY + ERR+
Sbjct: 236 NGLDVHLAVASYLYQDLEN------RTTPSPLLEEKVEAGELGAKSGQGFYAWPPERRE- 288
Query: 430 SPDPEVKKFIEKARSMSGVA 449
EV +K+ ++ V
Sbjct: 289 ----EVLA--DKSAALVEVR 302
|
Length = 311 |
| >gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 9e-37
Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 15/288 (5%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+K V + G G++GS IA + V + +++++ LE R+ V+ + T+E
Sbjct: 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62
Query: 207 KF-EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
E ++ +T D E+ KD D+VIEA+ E+ +K + +L K P I A+N+ST
Sbjct: 63 APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122
Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
+ + E T ++ + HF + EI+ T P+V ++ K I PIV
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182
Query: 325 VGN-CTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAITK-FGMPMGPFRLADLVGFGV 381
+ G+ +N + P+ AA L +G D ID+ G PMGPF + D+VG
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVG--- 239
Query: 382 AIATGMQFIENFPERTYKSMIIPI------MQEDKRAGETTRKGFYLY 423
+ T N+ E T + + G T +GFY Y
Sbjct: 240 -LDTAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNY 286
|
Length = 287 |
| >gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 4e-22
Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 40/297 (13%)
Query: 158 MGSGIATALILSNYPVILKEVN-------EKFLEAGIGRVRANLQSRVKKGKMTQEKFEK 210
MG GIA A + + V L + + L + V G++ + +
Sbjct: 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60
Query: 211 T---ISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
I+++ ++ D D+V EA+ E + K++ L ++ I+AS TST +
Sbjct: 61 VLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV 120
Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327
+ +R + AH+ +PA++MPL+E+ ++ T P V+ L + ++I K P+V G
Sbjct: 121 TDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGP 180
Query: 328 CTGFAVNRMFFPYTQA-----AFLLVERG-TDLYLIDRAI-TKFGMPMGPFRLADLVGFG 380
G+ V R+ QA A +VE G ID+AI T FG+ L + + +G
Sbjct: 181 SPGYIVPRI-----QALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWG 235
Query: 381 -----------VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426
+A G P+R I+ E+ R G T GFY Y
Sbjct: 236 GCDILYYASRYLAGEIG-------PDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAGV 285
|
Length = 314 |
| >gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 15/239 (6%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
VAI+G GL+G A + + V L + + A + L+ + E
Sbjct: 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAP 63
Query: 209 EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
+ ++ + ++ D D V E+ EN+ LK+ +FA+L+ PPH ILAS+TS +
Sbjct: 64 DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA 123
Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG- 326
+ E ++R + AH +P +++P++E+V T+P + + + ++P+ +
Sbjct: 124 SAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRR 183
Query: 327 NCTGFAVNRMFFPYTQAAFLLVERG----TDLYLIDRAITKFGMP-----MGPFRLADL 376
GF +NR+ + AF LV G D ID I + G+ MGPF DL
Sbjct: 184 EIDGFVLNRLQGALLREAFRLVADGVASVDD---IDAVI-RDGLGLRWSFMGPFETIDL 238
|
Length = 308 |
| >gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-20
Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITK-FGMPMGPFRLADLVGFGVAIATGM 387
GF VNR+ P A LVE G ID A+ G+PMGPF L+DLVG V
Sbjct: 1 GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60
Query: 388 QFIENFPERTYK-SMIIPIMQEDKRAGETTRKGFYLY 423
E F +R Y+ S ++ + E R G T KGFY Y
Sbjct: 61 VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97
|
This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97 |
| >gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG--IGRVRANLQSRVKKGKMT 204
+ K A +GGG++G G A +L+ V V + EA IG V AN + +T
Sbjct: 4 IMKAACIGGGVIGGGWAARFLLAGIDV---AVFDPHPEAERIIGEVLAN--AERAYAMLT 58
Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
L E+ D + E++ E + LK+++ A+++ P ++ S+TS
Sbjct: 59 DAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSG 118
Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
+ + E +R+ AH ++P +++PL+E+V +TSP+ I +I ++I P+
Sbjct: 119 FLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVH 178
Query: 325 VG 326
+
Sbjct: 179 IA 180
|
Length = 495 |
| >gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 21/244 (8%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVIL---KEVNEKFLEAGIGRVRANLQSRVKKGKM 203
+K A +G G++GSG + V+ E L A + L+ +
Sbjct: 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGA 66
Query: 204 TQEK--FEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261
+ + F TI D D + E+ E +LK ++ + + P I+AS+
Sbjct: 67 SPARLRFVATIE--------ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASS 118
Query: 262 TSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT 321
TS + R +R V H F+P +++PL+E++ +T+P+ + + I + +
Sbjct: 119 TSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMR 178
Query: 322 PI-VVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY-LIDRAITKFGMP-----MGPFRLA 374
P+ V GF +R+ + A LV G ID AI +FG MG F
Sbjct: 179 PLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI-RFGAGIRWSFMGTFLTY 237
Query: 375 DLVG 378
L G
Sbjct: 238 TLAG 241
|
Length = 321 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++LT + + EEA LGLVD VV +L++ A + A +
Sbjct: 157 LLLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSR 521
V MI VNEA + +GIA AD+D+A +G+ +P G + W D LG+ I
Sbjct: 422 TVAMI----VNEAADIAQQGIA-SPADIDLAMRLGLNYP--LGPLA-WGDRLGAARILRV 473
Query: 522 LEEWSSLYGE-FFKPCAFLAERAGKGATL 549
LE +LYG+ ++P +L RA G +L
Sbjct: 474 LENLQALYGDPRYRPSPWLRRRAALGLSL 502
|
Length = 507 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
M+LT + V E LG V+ VV +L++ A +WA DIL
Sbjct: 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILA 198
|
Length = 259 |
| >gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 470 VVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLY 529
+ NEA +G+A A D+D A +G+ +P G + WA LG + I LE Y
Sbjct: 425 LANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHHY 480
Query: 530 GE-FFKPCAFLAERAGKGATL 549
GE ++P + L RA G+
Sbjct: 481 GEERYRPSSLLRRRALLGSGY 501
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILE 41
++LT +P+ EA LGLVD VV +L+ A + A +
Sbjct: 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA 203
|
Length = 257 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKIE 57
MMLTS+P+ G EA GLV+ V L+ A++ A I L +T K
Sbjct: 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSS 217
Query: 58 PLGEA--REIFKFARA 71
E RE F
Sbjct: 218 SYYEGVKREAKIFGEV 233
|
Length = 257 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LT + ++ +EA +GLVD VV QLV A + A + + +A L +
Sbjct: 154 MLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRLADKPPLALAAL-----KAAMR 208
Query: 61 EA-REIFKFARAQARKQAPNLTHPIVCIDVVEA 92
A + RAQA + P P DV E
Sbjct: 209 AALEDALPEVRAQALRLYPA---PFSTDDVKEG 238
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLG---SKYI 518
+V + P++NEA R+ EG+A D+D A +G+G P G +D +G +I
Sbjct: 3 VVNRLLAPLLNEAIRLVEEGVA-TPEDIDAAMRLGLGLPM---GPFELSDLVGLDVGYHI 58
Query: 519 YSRLEEWSSLYGEFFKPCAFL 539
L E ++P L
Sbjct: 59 LEVLAEEFG--DRAYRPSPLL 77
|
This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
M+L +P+ EEA +GLV+ VV +L + A A +
Sbjct: 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPAS 204
|
Length = 259 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++LT +PV +EA ++GL + VV Q + A + A ++
Sbjct: 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAEL 195
|
Length = 254 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 3 LTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----P 58
LT+ P+ E A GLV+ VV ++L+ AR+ A I+++ + V YK+ +
Sbjct: 165 LTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMV-LRYKSVINDGLKLD 223
Query: 59 LGEAREIFK 67
LG A ++ K
Sbjct: 224 LGHALQLEK 232
|
Length = 265 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 561 | |||
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 100.0 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 100.0 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 100.0 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 100.0 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 100.0 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 100.0 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 100.0 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 100.0 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 100.0 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.95 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 99.92 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 99.9 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.88 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.87 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.83 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.82 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.82 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.8 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.8 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.8 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.77 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.74 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.71 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.7 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.7 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.7 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.67 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.67 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.67 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.66 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.59 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.58 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.52 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.52 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.52 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.51 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.51 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.5 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.49 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.48 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.47 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.46 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.45 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.44 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.44 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.43 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.42 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.41 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.41 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.4 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.39 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.36 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.36 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.35 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 99.34 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.34 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 99.34 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 99.33 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 99.33 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 99.32 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.32 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.32 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.32 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.31 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 99.31 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 99.31 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 99.31 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.31 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 99.31 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 99.31 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 99.3 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 99.3 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.3 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 99.29 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 99.28 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 99.28 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.28 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 99.28 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 99.28 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 99.27 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 99.27 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 99.26 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 99.26 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 99.26 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.26 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.26 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 99.25 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 99.25 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 99.25 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 99.25 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 99.25 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.25 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 99.25 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 99.25 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 99.24 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.24 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.24 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.24 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 99.23 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.23 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 99.23 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 99.23 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.22 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 99.22 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 99.21 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 99.21 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.21 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 99.2 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 99.2 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.2 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.19 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 99.19 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.18 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.18 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 99.18 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 99.18 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 99.18 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 99.17 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 99.16 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 99.16 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 99.15 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 99.15 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.15 | |
| PLN02921 | 327 | naphthoate synthase | 99.15 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.14 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.13 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 99.13 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.12 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.12 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 99.12 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.1 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 99.1 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 99.08 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.07 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 99.07 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 99.06 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 99.06 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.05 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 99.05 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 99.05 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 99.05 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.04 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 99.04 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 99.03 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 99.03 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 99.02 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 99.01 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 98.99 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.99 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.99 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 98.99 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 98.99 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.97 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.97 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.94 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 98.91 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.89 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.89 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.86 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.85 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.82 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 98.82 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 98.82 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.82 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 98.82 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 98.8 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.76 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.76 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.73 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 98.68 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.67 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.65 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.62 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 98.61 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.59 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 98.53 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 98.5 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.49 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.48 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.48 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.47 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.47 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 98.46 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 98.45 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.42 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.4 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.37 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 98.35 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.35 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.27 | |
| PLN02602 | 350 | lactate dehydrogenase | 98.27 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.25 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.25 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.24 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.22 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.21 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.19 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.19 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.19 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 98.15 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.15 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 98.14 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.13 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 98.12 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.08 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.07 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 98.07 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 98.07 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.05 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.05 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.04 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.98 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.97 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.96 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 97.96 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 97.94 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.94 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.88 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.86 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.83 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.83 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.78 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.78 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.78 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.75 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.75 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.74 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 97.74 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.73 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.73 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.72 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.69 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 97.66 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.63 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.61 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 97.6 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.6 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.58 | |
| PLN00106 | 323 | malate dehydrogenase | 97.57 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.55 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.54 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.54 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.54 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.52 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.52 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.47 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.45 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.45 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.44 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.4 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.38 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.38 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.38 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.36 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 97.35 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 97.33 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 97.32 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.31 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.31 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.29 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 97.27 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.26 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.25 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.24 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.22 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.21 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 97.19 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.18 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 97.17 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.14 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.12 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 97.12 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 97.1 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.1 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.08 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.08 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.07 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.04 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.02 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.02 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.01 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.01 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 97.0 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.97 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.96 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.95 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 96.94 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.93 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.9 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.89 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.88 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.84 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.81 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 96.8 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.79 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.78 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.76 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 96.76 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.75 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.74 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.74 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.73 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.72 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.72 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 96.71 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.69 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.68 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.62 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.61 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.54 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.54 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.51 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.46 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.43 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.42 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.41 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.38 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.38 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.36 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.36 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.33 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.32 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.32 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.27 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.23 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.22 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 96.22 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.18 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.16 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.16 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.14 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.13 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.12 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.11 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.11 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.09 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.08 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.05 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.04 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.04 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.0 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.0 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.97 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.97 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.95 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.93 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.93 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.9 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 95.87 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.82 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.8 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 95.77 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.74 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.69 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.67 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 95.66 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.6 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.59 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 95.57 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.55 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.53 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 95.5 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.48 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 95.48 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 95.47 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.42 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.39 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 95.37 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.37 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.36 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.33 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.31 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.3 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.25 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.21 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.2 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 95.19 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 95.16 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.14 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 95.13 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.12 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 95.12 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.1 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.09 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 95.08 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.07 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 95.04 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 95.0 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 94.95 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.9 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.89 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.88 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.87 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.86 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.84 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 94.83 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 94.83 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.83 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 94.81 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.77 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 94.75 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.73 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.73 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 94.72 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.72 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 94.69 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.69 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.67 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.67 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.65 | |
| PRK08643 | 256 | acetoin reductase; Validated | 94.64 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 94.63 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.6 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.6 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.59 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 94.58 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.56 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.53 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.53 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 94.52 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.52 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 94.51 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 94.49 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 94.46 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.43 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.42 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 94.41 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 94.41 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.41 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 94.41 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.38 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 94.37 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 94.36 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 94.32 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 94.29 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 94.29 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 94.27 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 94.25 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.24 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.24 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 94.23 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 94.22 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 94.2 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.19 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.19 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.19 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.17 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 94.16 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 94.16 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.14 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 94.13 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 94.13 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.12 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.12 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 94.11 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.1 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.07 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 94.07 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 94.06 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.05 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.05 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.02 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 94.02 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 94.01 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 93.99 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 93.95 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.95 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 93.93 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 93.9 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 93.83 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 93.82 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 93.81 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 93.8 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 93.79 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 93.78 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.78 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.75 |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-102 Score=864.84 Aligned_cols=539 Identities=31% Similarity=0.506 Sum_probs=486.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-------------CchHHHHHHHHHHhhccCCCchhhhcccCCCCC-----chhH
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIEP-----LGEA 62 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-------------~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~-----~~~~ 62 (561)
|+|||++++|+||+++||||+|||+ +++.+.|.+++++++..+.+.++......++.+ ....
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5899999999999999999999997 457888889998876643222111111111110 1123
Q ss_pred HHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008576 63 REIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG 141 (561)
Q Consensus 63 ~~~~~~a~~~~~~~~~~-~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~ 141 (561)
...+..+++++.+++++ ||||.+++++|+.+...+++++++.|++.|.+|+.|++++++++.|+.++..+|.+..
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~---- 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFG---- 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCC----
Confidence 56788889999999886 9999999999999999999999999999999999999999999999999999887531
Q ss_pred CCcccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 142 ~~~~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
..++++++|+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|++++++
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 13468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~ 301 (561)
+++++||+|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHH
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~ 381 (561)
.|++++++.+..+++.+||.||+++|+||||+||++.++++||++++++|+++++||.+++++|||||||+++|.+|||+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhhhHhhCCCCCc--ccchHHHHHHCCcCccccCceeeeccCCC--CCCCChhHHHHHHHHhhccCccCCcccccC
Q 008576 382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKFAKL 457 (561)
Q Consensus 382 ~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (561)
++++++.++..+++++. |++++.+|+++|++|+|||+|||+|++++ +...++++..++....+. + .....
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~----p--~~~~~ 643 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLP----P--KAEVS 643 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccC----c--ccccC
Confidence 99999999998887653 57899999999999999999999998654 467899988887554321 1 01135
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCA 537 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (561)
++++|+||++.+++|||++||+|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|.+.+|++|.|++
T Consensus 644 ~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~~~~p~~ 723 (737)
T TIGR02441 644 SPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQFTPCQ 723 (737)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCCH
Confidence 67899999999999999999999997799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCCc
Q 008576 538 FLAERAGK-GATL 549 (561)
Q Consensus 538 ~l~~~~~~-g~~g 549 (561)
+|++|+++ |+.|
T Consensus 724 lL~~~~~~~g~~f 736 (737)
T TIGR02441 724 LLLDHAKSPGKKF 736 (737)
T ss_pred HHHHHHHhcCCCC
Confidence 99999987 7653
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-100 Score=845.54 Aligned_cols=536 Identities=32% Similarity=0.557 Sum_probs=478.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCC----CchhHHHHHHHHHHHHHh-
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----PLGEAREIFKFARAQARK- 75 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~- 75 (561)
|+|||++++|++|+++||||+|||++++++.|.++++++.....++.+... .... +.......+..+++++.+
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQ--PKLEPLKLSKIEAMMSFTTAKGMVAQV 243 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCC--CCcccccccchHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999886653222221111 1111 111222345666775555
Q ss_pred hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcC
Q 008576 76 QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (561)
Q Consensus 76 ~~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~ 155 (561)
..++||||..++++|+.+...+++++++.|++.|.+|+.|+++++++++|+.+|..++.+.. .+..+++++||+|||+
T Consensus 244 ~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGa 321 (714)
T TIGR02437 244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGA 321 (714)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECC
Confidence 45679999999999999999999999999999999999999999999999999999886422 1234578999999999
Q ss_pred ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEecc
Q 008576 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (561)
Q Consensus 156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~ 235 (561)
|+||++||..++.+|++|+++|++++.++++.+++.+.++..+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (714)
T TIGR02437 322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401 (714)
T ss_pred chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHH
Q 008576 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (561)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~ 315 (561)
|++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~ 481 (714)
T TIGR02437 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA 481 (714)
T ss_pred ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCC
Q 008576 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (561)
Q Consensus 316 ~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (561)
+.+||+||+++|+||||+||++.++++||++|+++|+++++||.+|+ ++|||||||+++|.+|||+++++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~ 561 (714)
T TIGR02437 482 SKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFP 561 (714)
T ss_pred HHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999998888
Q ss_pred CCCc--ccchHHHHHHCCcCccccCceeeeccCC---C-CCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHH
Q 008576 395 ERTY--KSMIIPIMQEDKRAGETTRKGFYLYDER---R-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF 468 (561)
Q Consensus 395 ~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 468 (561)
+++. +++++.+|+++|++|+|+|+|||+|+++ + +...|+++..++...+.. ...++.++|+||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~Rll~ 633 (714)
T TIGR02437 562 DRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVYE--------QRDFDDEEIIARMMI 633 (714)
T ss_pred cccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhcc--------cCCCCHHHHHHHHHH
Confidence 7642 4689999999999999999999999643 2 456788888776543220 114677899999999
Q ss_pred HHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCC
Q 008576 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548 (561)
Q Consensus 469 ~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (561)
+++||+++||+|||+.+|+|||.++++|+|||+|+||||+|+|.+|++.+++.++.+. .++++|.|+++|++|+++|+.
T Consensus 634 ~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~~~~g~~ 712 (714)
T TIGR02437 634 PMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREMAKNGQS 712 (714)
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999777999999999999999999999999999999999999999766 789999999999999988764
Q ss_pred c
Q 008576 549 L 549 (561)
Q Consensus 549 g 549 (561)
|
T Consensus 713 f 713 (714)
T TIGR02437 713 F 713 (714)
T ss_pred C
Confidence 3
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-98 Score=833.66 Aligned_cols=532 Identities=34% Similarity=0.559 Sum_probs=479.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCC--CCchhHHHHHHHHHHHHHhhCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP 78 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~ 78 (561)
|+|||++++|++|+++||||+|||+++++++|.++|++. . +.+++......+ .++......++.+.++++++++
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~-~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG-K---PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC-C---CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999751 1 111110000011 1112224556667778877765
Q ss_pred -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcCcc
Q 008576 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (561)
Q Consensus 79 -~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~ 157 (561)
+|||+..+|++++.+...+++++++.|++.|..++.|+|+++++++|+.++..++.+... ..+++++||+|||+|.
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~~---~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGSD---ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCC---CCcccccEEEEECCcH
Confidence 699999999999999999999999999999999999999999999999999888765532 2346789999999999
Q ss_pred chHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccC
Q 008576 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (561)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e 236 (561)
||++||..++ .+|++|+++|++++.++++..++.+.+++.++++.+++.+.+..+++|+++++++.+++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 008576 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (561)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (561)
++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..+++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC
Q 008576 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (561)
Q Consensus 317 ~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (561)
.+||.||+++|.||||+||++.++++||++++++|++++|||.+++++|||+|||+++|.+|+|+++++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcccchHHHHHHCCcCccccCceeeeccCC-CCCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHHHHHH
Q 008576 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475 (561)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 475 (561)
+.|++++++|+++|++|+|||+|||+|+++ +++..++.+..++.. .+ ...++..++.||++.+++|||+
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~v~~Rll~~~~~Ea~ 624 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KP---GVDKEASAVAERCVMLMLNEAV 624 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999854 346778877665421 00 1246778999999999999999
Q ss_pred HHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCCc
Q 008576 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 476 ~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 549 (561)
+|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.+++.++.+.+.+|++|+|+++|++|+++|+.|
T Consensus 625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f 698 (699)
T TIGR02440 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSF 698 (699)
T ss_pred HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCc
Confidence 99999996699999999999999999999999999999999999999999999999999999999999987753
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-98 Score=830.33 Aligned_cols=535 Identities=34% Similarity=0.580 Sum_probs=478.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCc----hhHHHHHHHHHHHHHhh
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPL----GEAREIFKFARAQARKQ 76 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~ 76 (561)
|++||++++|+||+++||||+|||+++++++|.++|++++..+.+|.++.. ....+. ......++.+++.+.++
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~--~~~~p~a~~~~~~~~~~~~~k~~~~~~ 243 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQ--PKLEPLKLSKIEAMMSFTTAKGMVAQK 243 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccC--cccccccccchhHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999975323322211 111111 12234566677666444
Q ss_pred -CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcC
Q 008576 77 -APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (561)
Q Consensus 77 -~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~ 155 (561)
.++||++..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|..++.+... ...++.|+||+|||+
T Consensus 244 ~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~v~ViGa 321 (715)
T PRK11730 244 AGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQAAVLGA 321 (715)
T ss_pred hccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccceEEEECC
Confidence 56799999999999999888999999999999999999999999999999999998865321 123467999999999
Q ss_pred ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEecc
Q 008576 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (561)
Q Consensus 156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~ 235 (561)
|.||.+||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (715)
T PRK11730 322 GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVV 401 (715)
T ss_pred chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHH
Q 008576 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (561)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~ 315 (561)
|++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~ 481 (715)
T PRK11730 402 ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA 481 (715)
T ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCC
Q 008576 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (561)
Q Consensus 316 ~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (561)
+.+||.||+++|+||||+||++.++++|+++++++|.+++|||.+++ ++|||+|||+++|.+|+|+++++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~ 561 (715)
T PRK11730 482 SKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFP 561 (715)
T ss_pred HHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999998888
Q ss_pred CCCc--ccchHHHHHHCCcCccccCceeeeccCCC----CCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHH
Q 008576 395 ERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF 468 (561)
Q Consensus 395 ~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 468 (561)
++.. +++++.+|+++|++|+|+|+|||+|+++. +...|+++..++..... . ...++.++|.||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~i~nRll~ 633 (715)
T PRK11730 562 DRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----P----KREFSDEEIIARMMI 633 (715)
T ss_pred CccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----c----cCCCCHHHHHHHHHH
Confidence 7632 46899999999999999999999997432 34578888777654321 0 124678899999999
Q ss_pred HHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCC
Q 008576 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548 (561)
Q Consensus 469 ~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (561)
+++|||++|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.++++++.+. .++++|+|+++|++|+++|+.
T Consensus 634 ~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~v~~~~~ 712 (715)
T PRK11730 634 PMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREMAANGES 712 (715)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999866999999999999999999999999999999999999999875 588999999999999987664
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-98 Score=831.00 Aligned_cols=532 Identities=35% Similarity=0.559 Sum_probs=480.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCC--CchhHHHHHHHHHHHHHhhCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE--PLGEAREIFKFARAQARKQAP 78 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~ 78 (561)
|+|||++++|+||+++||||+|||+++++++|.++|+++... +++......+. ++......+..++++++++++
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPA----RRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCc----cCcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999999884221 01100000011 111224567788899998876
Q ss_pred -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcCcc
Q 008576 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (561)
Q Consensus 79 -~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~ 157 (561)
+|+|+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.+... ..+++++||+|||+|.
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~~---~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGSD---AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC---CCCCcccEEEEECCch
Confidence 699999999999999989999999999999999999999999999999999888765532 1346799999999999
Q ss_pred chHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccC
Q 008576 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (561)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e 236 (561)
||++||..++ .+|++|+++|++++.++++..++.+.+++.+++|.+++.+....+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999998888899999999999889999999999999
Q ss_pred ChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 008576 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (561)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (561)
++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC
Q 008576 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (561)
Q Consensus 317 ~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (561)
.+||.|++++|+||||+||++.++++|+++++++|+++++||.+++++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcccchHHHHHHCCcCccccCceeeeccCCC---CCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHHHH
Q 008576 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473 (561)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e 473 (561)
+.+++++++|+++|++|+|+|+|||+|+++. +...++++...+.. .+ ...++..+|.||++.+++||
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~i~~Rll~~~~nE 629 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TP---QSRLSANEIAERCVMLMLNE 629 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CC---CCCCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999998532 34567776655421 11 12578899999999999999
Q ss_pred HHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCCc
Q 008576 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 474 a~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 549 (561)
|++|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.+++.++.|.+.+|++|.|+|+|++|+++|+.|
T Consensus 630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f 705 (708)
T PRK11154 630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESF 705 (708)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCC
Confidence 9999999996699999999999999999999999999999999999999999999999999999999999987754
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-77 Score=637.77 Aligned_cols=400 Identities=33% Similarity=0.526 Sum_probs=356.7
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+++||+|||+|.||++||.+++.+|++|++||++++.++++.+++++.++..+++|.+++++.++.+++++.+++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++||+++..|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+.++++.+||.|++++++|||++||++.++++||+.++++|. ++++||.+++ ++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 9999999999 899999999999999999999
Q ss_pred HHHhhhHhhC-CCCC-cccchHHHHHHCCcCccccCceeeeccCCCCC-CC-----------------------------
Q 008576 384 ATGMQFIENF-PERT-YKSMIIPIMQEDKRAGETTRKGFYLYDERRKA-SP----------------------------- 431 (561)
Q Consensus 384 ~~~~~l~~~~-~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~-~~----------------------------- 431 (561)
++++.+++.+ ++.+ .|++++++|+++|++|+|||+|||+|+++.+. .+
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988764 5544 46788999999999999999999999865321 11
Q ss_pred ----------------------------------------ChhHHHHHHHHhhccCc--cCCc-----------------
Q 008576 432 ----------------------------------------DPEVKKFIEKARSMSGV--AIDP----------------- 452 (561)
Q Consensus 432 ----------------------------------------~~~~~~~~~~~~~~~~~--~~~~----------------- 452 (561)
|+.+..++...+....+ .+..
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 11111111111100000 0000
Q ss_pred --ccccCch--HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHH
Q 008576 453 --KFAKLSE--KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 528 (561)
Q Consensus 453 --~~~~~~~--~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (561)
.+..+.+ .+|+||++.+++|||++++++|++ +|+|||.+|++|+|||+ |||+|+|.+|++.++++++.|.+.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 0112233 699999999999999999999999 99999999999999999 999999999999999999999999
Q ss_pred hC-CCCCccHHHHHHHHcCCCc
Q 008576 529 YG-EFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 529 ~~-~~~~p~~~l~~~~~~g~~g 549 (561)
++ ++|.|+|+|++|++.|..+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~ 501 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGY 501 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCc
Confidence 99 4899999999999998765
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-75 Score=625.30 Aligned_cols=401 Identities=33% Similarity=0.550 Sum_probs=357.2
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
++++||+|||+|.||.+||.+++.+|++|++||++++.++++.+++++.+++.+++|.+++++.++.+++++++++++++
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
.+||+|||||||+.++|+.+|++++..+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++||+++..|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHH
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~ 382 (561)
+++++.+.++++.+||.+++++|+|||++||++.++++|++.++++|. ++++||.+++ ++|||||||+++|.+|+|+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~ 244 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVN 244 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999985 9999999998 89999999999999999999
Q ss_pred HHHHhhhHhhC-CC-CCcccchHHHHHHCCcCccccCceeeeccCCCC-CCCCh-------h-------------HHHHH
Q 008576 383 IATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDP-------E-------------VKKFI 439 (561)
Q Consensus 383 ~~~~~~l~~~~-~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~-~~~~~-------~-------------~~~~~ 439 (561)
+++.+.++..+ ++ ++.+++++++|+++|++|+|+|+|||+|+++++ ...++ . +.+++
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (507)
T PRK08268 245 HAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARLL 324 (507)
T ss_pred HHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHHH
Confidence 99999888764 44 445678999999999999999999999975432 22222 2 22221
Q ss_pred HHH----------------------------hhccCccCC-----------c--ccccC---------------------
Q 008576 440 EKA----------------------------RSMSGVAID-----------P--KFAKL--------------------- 457 (561)
Q Consensus 440 ~~~----------------------------~~~~~~~~~-----------~--~~~~~--------------------- 457 (561)
... .......+. . +..++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~ 404 (507)
T PRK08268 325 ERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQD 404 (507)
T ss_pred HhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 100 000000000 0 00011
Q ss_pred ---------chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHH
Q 008576 458 ---------SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 528 (561)
Q Consensus 458 ---------~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (561)
+..+|+||++.+++|||++|++|||+ +|+|||.+|++|+|||+ |||+|+|.+|++.++++++.+.+.
T Consensus 405 gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~~ 480 (507)
T PRK08268 405 GKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQAL 480 (507)
T ss_pred CCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45689999999999999999999998 89999999999999999 999999999999999999999999
Q ss_pred hCC-CCCccHHHHHHHHcCCCc
Q 008576 529 YGE-FFKPCAFLAERAGKGATL 549 (561)
Q Consensus 529 ~~~-~~~p~~~l~~~~~~g~~g 549 (561)
+|+ +|.|+++|++|+++|+.+
T Consensus 481 ~g~~~~~p~~ll~~~v~~G~~~ 502 (507)
T PRK08268 481 YGDPRYRPSPWLRRRAALGLSL 502 (507)
T ss_pred hCCCcCCcCHHHHHHHHcCCCc
Confidence 995 999999999999987754
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-67 Score=517.83 Aligned_cols=280 Identities=38% Similarity=0.679 Sum_probs=270.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.++||+|||+|.||++||..++..|++|+++|++++.+++++..+.+.+++++++|.+++.+.+..+++|++++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+|||+|+|++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||||+++|++|||+++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+.+|++.+||+|++++|+||||+||++.++++||++++.+|+ +|++||.+|+ ++|||||||+++|.+|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 9999999999 899999999999999999999
Q ss_pred HHHhhhHhhCCCC-Cc-ccchHHHHHHCCcCccccCceeeeccC
Q 008576 384 ATGMQFIENFPER-TY-KSMIIPIMQEDKRAGETTRKGFYLYDE 425 (561)
Q Consensus 384 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~ 425 (561)
++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888843 33 678999999999999999999999975
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-66 Score=469.97 Aligned_cols=280 Identities=36% Similarity=0.574 Sum_probs=264.9
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHhhhccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-----FEKTISLLTGVL 219 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~ 219 (561)
..++.|+|||+|.||++||+..+..|++|+++|.+++.+.++.+.|.+.+.+..+++..+... ++..+++|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999999999999999999998888887765433 366788999888
Q ss_pred ccc-ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEE
Q 008576 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 298 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv 298 (561)
+.+ .+.++|+||||+.|+.++|+.+|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||++.|.+|||+
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 885 5889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHH
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL 376 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~ 376 (561)
.++.|++++++.+..|.+.+||++|-++|.||||+||++.+|++||+++++.|. +-+|||.+|+ |.|+||||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 9999999999 99999999999999
Q ss_pred hchHHHHHHHhhhHhhCCCC--CcccchHHHHHHCCcCccccCceeeecc
Q 008576 377 VGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (561)
Q Consensus 377 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v~~G~~G~k~g~GfY~y~ 424 (561)
+|||++..+|+.+++.+++. +.|+|++.++|++|++|+|+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998654 4589999999999999999999999984
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-63 Score=484.13 Aligned_cols=376 Identities=42% Similarity=0.675 Sum_probs=343.7
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccCC
Q 008576 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~ 237 (561)
||++||.++..+|++|++.|.|...++.+..++...+.+.+.++.++.........++..+.|++.+++||+|||+|.||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (561)
+++|++++.+|+++++++||++||||+++++++++.+..|++++|+|||+|++.++++||+.+.+|+..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEcccccchhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC
Q 008576 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (561)
Q Consensus 318 lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~-G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (561)
.|+.|++|++++||.+||++.+|+.++.++..+ |++|.++|.....||||+||+.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999888877 8999999999999999999999999999999888776665555543
Q ss_pred CcccchHHHHHHCCcCccccCceeeeccCCCCCCCCh-hHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHHHHHH
Q 008576 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDP-EVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475 (561)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 475 (561)
+..+|++.|+.|+|||+|||.|+++.+...++ +..+.+.... ....+...+++++++|++.+++|||+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 78899999999999999999999875544444 3333333222 11122357889999999999999999
Q ss_pred HHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCCc
Q 008576 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 476 ~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 549 (561)
+|++||+..+|+++|++.++|+|||+++||||+|+|..|++++++.++.|+. |+||.+|.+++++|+.+
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~ 378 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKF 378 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999886 99999999999986654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-61 Score=481.96 Aligned_cols=279 Identities=33% Similarity=0.548 Sum_probs=269.2
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
++++||+|||+|.||.+||..++.+|++|++||++++.++++.+++.+.++.++++|.++..+..+.+++++.+++++++
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999889999999999999889
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhc-CCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~-~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
++||+|||||||+.++|+++|+++++.+ ++++||+||||++++++++....+|+|++|+|||+|++.++++||+++..|
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHH-hcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchH
Q 008576 304 SPQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 304 ~~e~~~~~~~l~~-~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld 380 (561)
++++++.+.+++. .+||.|++++|.|||++||++.++++|+++++++|+ +++|||.+++ ++|||+|||+++|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence 9999999999988 599999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHhhhHhhCCCCC-cccchHHHHHHCCcCccccCceeeec
Q 008576 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLY 423 (561)
Q Consensus 381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y 423 (561)
+++++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 99999999999998754 58899999999999999999999998
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=456.09 Aligned_cols=279 Identities=27% Similarity=0.445 Sum_probs=263.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (561)
.++||+|||+|.||.+||..++.+|++|++||++++.++++.+.+.+.++...+.+.++..+ ......+++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999988888888888888887766 666778898888886 5
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+++||+||+|+||+.++|+++++++.+.+++++||+||+|+++++++++.+.+|+||+|+|||+|++.++++||++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchH
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld 380 (561)
++++++.+.++++.+|+.|+++. |.|||++||++.++++||++++++|+ +|+|||++++ ++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 99999999999999999999995 99999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHhhhHhhCCCCCc--ccchHHHHHHCCcCccccCceeeecc
Q 008576 381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 424 (561)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~ 424 (561)
++.++++++++.++++++ |++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 78999999999999999999999994
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=449.59 Aligned_cols=281 Identities=29% Similarity=0.517 Sum_probs=267.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++...++..++.+.++..+.+...++++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999888888888888888989888788888889888888 4689
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+|+|++.++|+.+++++.+.+++++||++|+|+++++++++.+.+|.|++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.++++++.+|+.+++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHhhhHhhCCCCCcccchHHHHHHCCcCccccCceeeeccCCC
Q 008576 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (561)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999898887789999999999999999999999998654
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-56 Score=448.95 Aligned_cols=278 Identities=32% Similarity=0.553 Sum_probs=262.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+++||+|||+|.||.+||..|+.+|++|++||++++.++.+.+++++ .++..++.+.++..+.++..+++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 47899999999999999999999999999999999999988887766 366677888888888888888888888887
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ 302 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ 302 (561)
.+++||+||+|+|++.++|+++++++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|++++..
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchH
Q 008576 303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld 380 (561)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||++++ ++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHhhhHhhCCCCC-cccchHHHHHHCCcCcccc-----Cceeeec
Q 008576 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLY 423 (561)
Q Consensus 381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~-----g~GfY~y 423 (561)
++.++++.+++.+++++ .|+++|++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999999999998865 4778999999999999999 9999998
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=446.82 Aligned_cols=278 Identities=35% Similarity=0.609 Sum_probs=266.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.|+||+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.++...+.|.++..+......+++.++++++++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 36799999999999999999999999999999999999999999999999999999888888877888898888888899
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+|+||+.++|+++++++.+++++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|++++..|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+..+++.+|+.|++++|.|||++||++.++++|+++++++|+ +|+|||.+++ |+|||+|||+++|.+|+|++.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHhhhHhhCCCCC-cccchHHHHHHCCcCccccCceeeec
Q 008576 384 ATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLY 423 (561)
Q Consensus 384 ~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y 423 (561)
++++.+++.++++. .|++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 99999999998744 57889999999999999999999998
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-55 Score=443.85 Aligned_cols=282 Identities=31% Similarity=0.554 Sum_probs=269.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+++||+|||+|.||.+||..|+.+|++|+++|++++.++.+.+++++.++.+++.|.++.++.++.++++.++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999888888888888888888899
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+||+|++++|+.+++++.+.+++++||+||||+++++++++.+.++.+++|+||++|++.++++|++++..|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHhhhHhhCCCC-CcccchHHHHHHCCcCccccCceeeeccCCC
Q 008576 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (561)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (561)
++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 9999999999875 4578999999999999999999999998654
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-55 Score=442.46 Aligned_cols=282 Identities=32% Similarity=0.527 Sum_probs=267.0
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
+.++||+|||+|.||.+||..|+.+|++|++||++++.++.+.+++.+.++..++.|.++..+....+.+++++++++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 35789999999999999999999999999999999999999888888888888888988887777778889888888889
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
++||+||+|+||+.++|+.+++++.+.+++++||+||||+++++++++.+.+|+|++|+||++|++.++++|++++..|+
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~ 161 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATD 161 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHH
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~ 382 (561)
+++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++
T Consensus 162 ~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~ 241 (292)
T PRK07530 162 EATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTC 241 (292)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999998 9999999999 99999999999999999999
Q ss_pred HHHHhhhHhhCCCCC-cccchHHHHHHCCcCccccCceeeeccCC
Q 008576 383 IATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (561)
Q Consensus 383 ~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 426 (561)
.++++.+++.++++. .|++++.+|+++|++|+|+|+|||+|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 242 LSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 999999999888754 57889999999999999999999999754
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=432.68 Aligned_cols=268 Identities=26% Similarity=0.393 Sum_probs=254.6
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc--c-cccCCC
Q 008576 158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV 227 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a 227 (561)
||++||..++.+|++|+++|++++ .++++.+++.+.++.++++|.++.++.++.+++|+++++ . +.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477788999999999999999999988899999998765 3 458999
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHH
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 307 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~ 307 (561)
|+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhchHHH
Q 008576 308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA 382 (561)
Q Consensus 308 ~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~Gld~~ 382 (561)
++.+.+++..+|+.+++++|.|||++||++.++++|++.++++|+ ++++||.+++ ++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999985 9999999998 99999 699999999999999
Q ss_pred HHHHhhhHhhCCC-CCcccchHHHHHHCCcCccccCceeeeccC
Q 008576 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (561)
Q Consensus 383 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~ 425 (561)
.++++.+++.+++ ++.|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998887 556889999999999999999999999964
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-54 Score=433.02 Aligned_cols=277 Identities=22% Similarity=0.299 Sum_probs=247.9
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-c
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (561)
++++||+|||+|+||++||..|+.+|++|++||++++.++.+.+++.+.++.+.+.+ +++. ...++++.+++++ .
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence 468899999999999999999999999999999999999999888988888888877 3332 3346788888884 5
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+++||+|||||||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+|+|||||++++|+|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEE-cccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~ 377 (561)
++++++.+..|++.+||.||++ +|.||||+||++.++++||++++++|+ |++|||++|+ |+|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 599999999999999999999999997 9999999999 99987 9999999999
Q ss_pred chHH-HHHHHhhhHhhCCCC---CcccchHHHHHH------CCcCccccCceeeeccC
Q 008576 378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDE 425 (561)
Q Consensus 378 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~G~~G~k~g~GfY~y~~ 425 (561)
|+|. +.+.++++.+.+.+. ..++++..+|++ ++.+|.++..++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 445556655544221 224557777877 78899999999998864
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=382.69 Aligned_cols=277 Identities=31% Similarity=0.535 Sum_probs=246.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-cc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 224 (561)
.++||+|||+|.||.+||..|+++|++|++||++++.++.+.+.+.+........+. ....+.+++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877655443332222211 012234566666775 48
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
++||+||+|||++.+.++.+++++.+.+++++||+|+||+++++++++.+.++.+|+|+||++|++.++++++++++.++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhc
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~G 378 (561)
+++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++|. ++++||.+++ ++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999996 78999999999999999999999985 9999999998 99998 79999999999
Q ss_pred hHHHHHHHhhhHhhCCCCCcccchHHHHHHCCcCccccCceeeeccCCC
Q 008576 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (561)
Q Consensus 379 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (561)
+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 9999999999999998887788999999999999999999999997543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=331.84 Aligned_cols=262 Identities=24% Similarity=0.339 Sum_probs=243.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
|++|+|||+|.||++||..|+++|++|++||++++.++.+.+++...++.+.+.|.++..+....++++..+++++ .++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 5789999999999999999999999999999999999999999988999999999988777778888888888885 579
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+|+|++.++|+.+++++.+.+++++||+||||+++++++++.+.++.++++.||++|++.++++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh--
Q 008576 306 QVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV-- 377 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~-- 377 (561)
++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|. |+++||.+++ ++|++ +|||++.|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 999999999999999999996 78999999999999999999999885 9999999999 89988 8999999987
Q ss_pred -chHHHHHHHhhhHhhCCCCC-cccchHHHHHH
Q 008576 378 -GFGVAIATGMQFIENFPERT-YKSMIIPIMQE 408 (561)
Q Consensus 378 -Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~v~ 408 (561)
|++........++..+++.. .|+|++.+|++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 89999999888888887754 47788888887
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=296.48 Aligned_cols=180 Identities=38% Similarity=0.648 Sum_probs=161.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
||+|||+|.||.+||..++.+|++|+++|++++.++.+.+++++.++..++.+.+++++....+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHH
Q 008576 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI 308 (561)
Q Consensus 229 lVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~ 308 (561)
+||||+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.+++|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEccc
Q 008576 309 VDLLDIGKKIKKTPIVVGNC 328 (561)
Q Consensus 309 ~~~~~l~~~lGk~~v~v~d~ 328 (561)
+.+..+++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999873
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=322.86 Aligned_cols=243 Identities=23% Similarity=0.319 Sum_probs=205.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
++||+|||+|+||++||..|+++|++|++||+++++++...+.+....... +.+.... ....++++++++++ .++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~~ 79 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAVA 79 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHhc
Confidence 679999999999999999999999999999999998876443222211111 1111111 11124566777774 589
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+|+||+.++|+++++++.+.+++++||+||||+++++++++.+.++.++++.|||||++.++++|+++++.|++
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhch
Q 008576 306 QVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGF 379 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~Gl 379 (561)
++++.++++++.+|+.+++++ +.+||++||++.++++||+.++++|. ++++||.+++ ++|++ +|||++.|+.|+
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~ 239 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGG 239 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCc
Confidence 999999999999999999995 89999999999999999999999875 9999999999 87764 899999999986
Q ss_pred H-HHHHHHhhhHhhC
Q 008576 380 G-VAIATGMQFIENF 393 (561)
Q Consensus 380 d-~~~~~~~~l~~~~ 393 (561)
+ .+.+.++++.+.+
T Consensus 240 ~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 240 EAGMRHFLAQFGPCL 254 (495)
T ss_pred HHHHHHHHHHhchhh
Confidence 5 4555556555443
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=264.97 Aligned_cols=233 Identities=27% Similarity=0.447 Sum_probs=212.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhccccccccccc-
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYES- 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~- 223 (561)
+..||+|+|.|.+|+++|..|+..||+|.+||+.++++.-+++.+++.+..+-++|.+... .+++.+..|..++++++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 3679999999999999999999999999999999999999999999888877665533211 24556778888999855
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+++|=.|-|||||++.+|+.++++++..+.+.+|++|+||++.++.+.+.+.+.++++..||.|||+++|++|++|.+-|
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwT 161 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWT 161 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~ 377 (561)
+|+++++.+++.+.+|..||... +.-||.+||+..+++||.-+++..|+ ++.|+|.+|. |+|.+ .||+|++.+.
T Consensus 162 sp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 162 SPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred ChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 99999999999999999999875 68999999999999999999999997 9999999999 99976 5999998765
Q ss_pred c
Q 008576 378 G 378 (561)
Q Consensus 378 G 378 (561)
-
T Consensus 242 A 242 (313)
T KOG2305|consen 242 A 242 (313)
T ss_pred c
Confidence 4
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=254.95 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=152.2
Q ss_pred hcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 251 ~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
.+.+++++++..++.+.+..+....+|+|++|+|||+|++.++++||+++..|++++++.+..+++.+||.|++++|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 34567888887777777777766678999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCCC-CCcccchHHHHH
Q 008576 331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ 407 (561)
Q Consensus 331 ~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v 407 (561)
||+||++.++++||++++++|+ +++|||.+|+ |+|||+|||+|+|.+|+|.++++++.+++.+++ ++.|+++|++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999998 9999999999 999999999999999999999999999999996 555889999999
Q ss_pred HCCcCccccCceeee
Q 008576 408 EDKRAGETTRKGFYL 422 (561)
Q Consensus 408 ~~G~~G~k~g~GfY~ 422 (561)
++| ..||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 986 66764
|
|
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=187.57 Aligned_cols=94 Identities=40% Similarity=0.635 Sum_probs=87.4
Q ss_pred cchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCCCc-ccchHHHH
Q 008576 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM 406 (561)
Q Consensus 330 G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 406 (561)
|||+||++.++++||++++++|+ +|++||.+++ ++|||+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 9999999999 899999999999999999999999999999998854 68999999
Q ss_pred HHCCcCccccCceeeec
Q 008576 407 QEDKRAGETTRKGFYLY 423 (561)
Q Consensus 407 v~~G~~G~k~g~GfY~y 423 (561)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-24 Score=179.54 Aligned_cols=95 Identities=34% Similarity=0.534 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCC-CCccHHH
Q 008576 461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF-FKPCAFL 539 (561)
Q Consensus 461 ~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~~l 539 (561)
+|+||++.+++|||+++++||++ +|+|||.+++.|+|||+ |||+++|.+|++.+.++++.+.+.+++. +.|++++
T Consensus 2 Fi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l 77 (97)
T PF00725_consen 2 FIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLL 77 (97)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHH
Confidence 68999999999999999999999 89999999999999998 9999999999999999999999999985 8899999
Q ss_pred HHHHHcCCCcccCCcccccc
Q 008576 540 AERAGKGATLVRNLKLFFSY 559 (561)
Q Consensus 540 ~~~~~~g~~g~~~g~Gfy~y 559 (561)
++|+++|++|.|+|+|||+|
T Consensus 78 ~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 78 KEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHCCCCcCcCCCcceeC
Confidence 99999999999999999998
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=204.65 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=112.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccH
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP 370 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GP 370 (561)
..+||+++..|++++++.+..++..+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+|+ ++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 478999999999999999999999999999999999999999999999999999999998 8999999998 99999999
Q ss_pred HHHHHHhchHHHHHHHhhhHhhCCC-CCcccchHHHHHHCC
Q 008576 371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK 410 (561)
Q Consensus 371 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~G 410 (561)
|+|+|.+|+|+++++++++++.+++ ++.|+++|++|+..|
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g 498 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG 498 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence 9999999999999999999999986 555889999999986
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=184.72 Aligned_cols=99 Identities=27% Similarity=0.454 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC--CCCc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE--FFKP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p 535 (561)
+..||+||+|.++++||+|+++.|.+ +-+|||.+|.+|.|||| |||+++|.+|+|....+|.-|.+.+++ .|.|
T Consensus 198 tpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~p 273 (298)
T KOG2304|consen 198 TPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAP 273 (298)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCC
Confidence 44699999999999999999999999 89999999999999999 999999999999999999999999964 7999
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+|+|.+++++|++|+|+|+|||+|.
T Consensus 274 sPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 274 SPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred ChHHHHHHhccccccccCccceecC
Confidence 9999999999999999999999994
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=189.16 Aligned_cols=99 Identities=25% Similarity=0.337 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAF 538 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~ 538 (561)
..++.||++.+++|||++|+++|++ +|+|||.++++|+|||+ |||+++|.+|++.+++.++.+.+.++++|.|+++
T Consensus 184 ~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 259 (288)
T PRK09260 184 PGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAPL 259 (288)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 3599999999999999999999998 89999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcccCCccccccCC
Q 008576 539 LAERAGKGATLVRNLKLFFSYLE 561 (561)
Q Consensus 539 l~~~~~~g~~g~~~g~Gfy~y~~ 561 (561)
|.+|+++|++|.|+|+|||+|++
T Consensus 260 l~~~~~~g~~G~k~g~Gfy~y~~ 282 (288)
T PRK09260 260 LEKYVKAGRLGRKTGRGVYDYTN 282 (288)
T ss_pred HHHHHHCCCCccccCCEEEECCC
Confidence 99999999999999999999964
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-20 Score=186.14 Aligned_cols=97 Identities=23% Similarity=0.367 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 537 (561)
.-++.||++.+++|||++|+++|++ +|+|||.+++.|+|||+ |||+++|.+|++.++++++.+.+.+++ +|.|++
T Consensus 189 pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~ 264 (286)
T PRK07819 189 SGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPPP 264 (286)
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCCH
Confidence 4589999999999999999999998 89999999999999998 999999999999999999999999986 889999
Q ss_pred HHHHHHHcCCCcccCCcccccc
Q 008576 538 FLAERAGKGATLVRNLKLFFSY 559 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y 559 (561)
+|++|+++|++|.|+|+|||+|
T Consensus 265 ~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 265 LLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999999999999
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-20 Score=185.76 Aligned_cols=98 Identities=29% Similarity=0.472 Sum_probs=94.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCcc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPC 536 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 536 (561)
+..+|.||++.+++|||++|+++|++ +|+|||.++++|+|||+ |||+++|.+|++.++++++.+.+.+++ +|+|+
T Consensus 184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 259 (282)
T PRK05808 184 APGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRPC 259 (282)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 45699999999999999999999998 79999999999999998 999999999999999999999999986 88999
Q ss_pred HHHHHHHHcCCCcccCCcccccc
Q 008576 537 AFLAERAGKGATLVRNLKLFFSY 559 (561)
Q Consensus 537 ~~l~~~~~~g~~g~~~g~Gfy~y 559 (561)
++|++|+++|++|.|+|+|||+|
T Consensus 260 ~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 260 PLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHCCCCccccCCcccCC
Confidence 99999999999999999999999
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-19 Score=182.00 Aligned_cols=99 Identities=24% Similarity=0.396 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 537 (561)
..++.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.++++++.+.+.+++ +|.|++
T Consensus 186 ~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (295)
T PLN02545 186 PGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPCP 261 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCH
Confidence 4589999999999999999999998 79999999999999998 999999999999999999999998986 789999
Q ss_pred HHHHHHHcCCCcccCCccccccCC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYLE 561 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~~ 561 (561)
+|.+|+++|++|.|+|+|||+|+.
T Consensus 262 ~l~~~~~~g~~G~k~g~Gfy~y~~ 285 (295)
T PLN02545 262 LLVQYVDAGRLGRKSGRGVYHYDG 285 (295)
T ss_pred HHHHHHHCCCCcccCCCeeeECCC
Confidence 999999999999999999999963
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-19 Score=180.92 Aligned_cols=99 Identities=23% Similarity=0.353 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCC--Cc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF--KP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 535 (561)
...++.||++.+++|||++++++|++ +|+|||.+|+.|+|||+ |||+++|.+|+|.++++++.+...+++.+ .|
T Consensus 187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 262 (287)
T PRK08293 187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA 262 (287)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence 34699999999999999999999999 89999999999999998 99999999999999999999999888753 48
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+++|++|+++|++|.|+|+|||+|+
T Consensus 263 ~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 263 AALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred hHHHHHHHHCCCCcccCCCccccCc
Confidence 8999999999999999999999995
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=178.52 Aligned_cols=99 Identities=25% Similarity=0.423 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhC--CCCCc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYG--EFFKP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~p 535 (561)
.+-||.||++.++++||++++++|++ +|++||.+|+.++|||+ |||+++|.+|+|..+++++.+.+.++ +.|.|
T Consensus 184 ~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~~ 259 (307)
T COG1250 184 VPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYRP 259 (307)
T ss_pred CCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCccccc
Confidence 44699999999999999999999999 89999999999999998 99999999999999999999998887 36788
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
++++++|++.|++|+|+|+|||+|.
T Consensus 260 ~~~~~~~v~~g~lG~Ksg~GfY~y~ 284 (307)
T COG1250 260 PPLLRKLVEAGRLGRKSGKGFYDYR 284 (307)
T ss_pred cHHHHHHHhcccccccCCCcceecc
Confidence 9999999999999999999999996
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-19 Score=177.17 Aligned_cols=97 Identities=25% Similarity=0.266 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 537 (561)
..++.||++.+++|||++++++|++ +++|||.+++.++|||+ |||+++|.+|++.+.++++.+.+.+++ +|.|++
T Consensus 188 pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 263 (291)
T PRK06035 188 PGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPPN 263 (291)
T ss_pred CCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCccH
Confidence 4589999999999999999999999 89999999999999998 999999999999999999999998886 789999
Q ss_pred HHHHHHHcCCCcccC-----Ccccccc
Q 008576 538 FLAERAGKGATLVRN-----LKLFFSY 559 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~-----g~Gfy~y 559 (561)
+|++|+++|++|.|+ |+|||+|
T Consensus 264 ~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 264 SLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 999999999999999 9999999
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=176.32 Aligned_cols=97 Identities=25% Similarity=0.392 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccHH
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 538 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (561)
-++.||++.+++|||++++++|++ ++++||.++++|+|||+ |||+++|.+|++.++++++.+.+.+++ +|.|+++
T Consensus 187 g~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~ 262 (292)
T PRK07530 187 AFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPCPL 262 (292)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCCHH
Confidence 589999999999999999999998 89999999999999997 999999999999999999999988876 7899999
Q ss_pred HHHHHHcCCCcccCCccccccC
Q 008576 539 LAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 539 l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
|.+|+++|++|.|+|+|||+|+
T Consensus 263 l~~~v~~g~~G~k~g~Gfy~y~ 284 (292)
T PRK07530 263 LVKYVEAGWLGRKTGRGFYDYR 284 (292)
T ss_pred HHHHHHCCCCccccCCEeeeCC
Confidence 9999999999999999999994
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-18 Score=175.87 Aligned_cols=100 Identities=28% Similarity=0.335 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccHH
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 538 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (561)
.++.||++.++++||+.|+++|++ +|++||.++..|+|||++.+|||+++|.+|++.++++++.+.+.+++ +|.|+++
T Consensus 183 Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~ 261 (314)
T PRK08269 183 GYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPAI 261 (314)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 479999999999999999999998 89999999999999999999999999999999999999999988887 8999999
Q ss_pred HHHHHHcCCCcccCCccccccC
Q 008576 539 LAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 539 l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
|++|+++|++|.|+|+|||+|+
T Consensus 262 l~~~v~~g~~G~ksG~GfY~y~ 283 (314)
T PRK08269 262 VVRNMEEGRDGLRTGAGFYDYA 283 (314)
T ss_pred HHHHHHCCCCcccCCCcceeCC
Confidence 9999999999999999999995
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=157.83 Aligned_cols=186 Identities=20% Similarity=0.264 Sum_probs=138.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||.+||.+|.++||+|++||+++++..+.. ...|... ..+..+.+.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~Ga~~------------a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAGATV------------AASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcCCcc------------cCCHHHHHHhC
Confidence 4899999999999999999999999999999998843211 1233211 12223668899
Q ss_pred CEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCCC------CCeE
Q 008576 228 DMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MPLL 295 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~~------~~lv 295 (561)
|+||.|||++.++...++. .+.+.+++++++++.+ |++++ ++++.+. -.|.+|+. |+.. ...+
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS-Tisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMS-TISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECC-CCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999988888777774 5778888999887544 44443 4444442 23777774 5543 2334
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-ccc---hhhhHHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nrl~~~~----~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.|+.| .+++.+++++++++.+|+.++++++. .|. ++|+++... +.||+.+.+ .|++++.+..+++
T Consensus 134 timvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~ 207 (286)
T COG2084 134 TIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVIS 207 (286)
T ss_pred EEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 45554 48999999999999999999999874 443 688887754 579999987 5899999999998
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-17 Score=183.81 Aligned_cols=97 Identities=28% Similarity=0.289 Sum_probs=92.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCA 537 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (561)
+..+|.||++.+++|||++++++|+ +++|||.++. ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 486 ~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~ 559 (699)
T TIGR02440 486 KAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPA 559 (699)
T ss_pred ccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcH
Confidence 3469999999999999999999996 6999999996 899999 999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcccCCccccccC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+|++|+++|++|.|+|+|||+|+
T Consensus 560 ~l~~~v~~G~lG~ksg~GfY~y~ 582 (699)
T TIGR02440 560 VFDKLLSDDRKGRKNGKGFYLYG 582 (699)
T ss_pred HHHHHHHCCCCcccCCcEEEeCC
Confidence 99999999999999999999996
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-17 Score=183.23 Aligned_cols=97 Identities=26% Similarity=0.300 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCA 537 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (561)
.+.+|.||++.+++|||++++++|+ +|+|||.+++ ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~ 564 (708)
T PRK11154 491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPA 564 (708)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCH
Confidence 3458999999999999999999998 5999999998 899999 999999999999999999999998999999999
Q ss_pred HHHHHHHcCCCcccCCccccccC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+|++|+++|++|.|+|+|||+|+
T Consensus 565 ~l~~~v~~g~~G~k~g~GfY~y~ 587 (708)
T PRK11154 565 AFDKLLNDDRKGRKNGRGFYLYG 587 (708)
T ss_pred HHHHHHHCCCCcccCCceEEECC
Confidence 99999999999999999999996
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=166.33 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHH
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFL 539 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l 539 (561)
.++.||++.++++||+.++++|++ +|++||.++..++|||+++.|||+++|.+|++.+.+++..+.+.++++|.|+++|
T Consensus 184 G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l 262 (311)
T PRK06130 184 GFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPLL 262 (311)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHHH
Confidence 469999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcccCCccccccC
Q 008576 540 AERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 540 ~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
++|+++|++|.|+|+|||+|+
T Consensus 263 ~~~~~~g~~G~~~g~gfy~y~ 283 (311)
T PRK06130 263 EEKVEAGELGAKSGQGFYAWP 283 (311)
T ss_pred HHHHHcCCccccCCCcCccCC
Confidence 999999999999999999996
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=151.86 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=120.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||.+||..|.++|++|++||++++.++.+. +.|.++ ..+++.+.+.+|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 3799999999999999999999999999999998876643 233221 122344567899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC------------CCCeE
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lv 295 (561)
|+||+|+|++ ...++++++.+.++++++| +.++++....+........+|+++||+.+.. ....+
T Consensus 59 DlVilavp~~--~~~~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIG--LLLPPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHH--HHHHHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 9999999954 4456788998888888877 4555666665555545556799999986442 24566
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+++++.++++.++.+..+++.+|..++.++.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 78898999999999999999999999998873
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=158.74 Aligned_cols=187 Identities=17% Similarity=0.296 Sum_probs=136.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
||+|||+|.||.+||..|++.|++|++||+++++++... +.|.. ..++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876532 22321 1112224578999
Q ss_pred EEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCC------CCCeEE
Q 008576 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------VMPLLE 296 (561)
Q Consensus 229 lVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~------~~~lve 296 (561)
+||+|+|++..++..++. .+.+.++++++|+. +|+.++. ++.+.+... |+||+. |+. ....+.
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999988777666553 35666788888874 4455443 455555322 566655 322 123345
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-ccc---chhhhHHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---~i~nrl~~~~----~~ea~~l~~-~G~~~~~ID~a~~-~~G 365 (561)
++.+ .+++.++.++++++.+|+.++++++ .+| +++|+++... ++|++.+.+ .|++++++..++. +.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5555 3689999999999999999999975 556 4788888865 789999886 5789999999998 544
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=178.55 Aligned_cols=97 Identities=25% Similarity=0.334 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCC--c
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFK--P 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~--p 535 (561)
.+.+|.||++.+++|||++++++|+ +|++||.++ .++|||+ |||+++|.+|+|..+++++.+...++++|. |
T Consensus 516 ~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~---GP~~l~D~vGld~~~~v~~~l~~~~~~~~~~~~ 589 (737)
T TIGR02441 516 GPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPV---GAATLADEVGVDVAEHVAEDLGKAFGERFGGGS 589 (737)
T ss_pred cCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCccccccc
Confidence 4469999999999999999999998 699999997 6999999 999999999999999999999988888874 7
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
++++++|+++|++|+|+|+|||+|+
T Consensus 590 ~~~l~~~v~~G~~G~k~G~GfY~y~ 614 (737)
T TIGR02441 590 AELLSELVKAGFLGRKSGKGIFIYQ 614 (737)
T ss_pred CHHHHHHHHCCCCcccCCCeeEEcC
Confidence 8999999999999999999999996
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=152.66 Aligned_cols=188 Identities=17% Similarity=0.265 Sum_probs=136.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++||+|||+|.||.++|..|++.|++|++||++++.++... +.+. ...+++ +.+.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHh
Confidence 35899999999999999999999999999999998766532 2221 123333 3468
Q ss_pred CCCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccCCC-CC------CC
Q 008576 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPA-HV------MP 293 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~P~-~~------~~ 293 (561)
+||+||+|+|+...++..++ ..+.+.++++++|+ ++|+.++. ++++.+... |.||++++ .. ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 89999999998877665554 34667778889887 45555543 455544322 67776543 22 13
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccch---hhhHHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K 363 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i---~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~~-~ 363 (561)
.++++.+ ++++.++.+.++++.+|+.++++++ .+|++ +|+++.. .++|++.+.+ .|+++++++.+++ +
T Consensus 133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3555555 3688999999999999999998875 56764 7777665 3789999987 5789999999987 4
Q ss_pred cC
Q 008576 364 FG 365 (561)
Q Consensus 364 ~G 365 (561)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 43
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=177.48 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCC--Cc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF--KP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 535 (561)
++.+|.||++.+++|||++++++| + +++|||.+++.++|||+ |||+++|.+|+|.++++++.+...+++++ .|
T Consensus 494 ~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 568 (715)
T PRK11730 494 CPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKDY 568 (715)
T ss_pred cCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccch
Confidence 446999999999999999999999 6 79999999999999998 99999999999999999999998888753 46
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+++|++|+++|++|.|+|+|||+|+
T Consensus 569 ~~~l~~~v~~G~~G~k~g~GfY~y~ 593 (715)
T PRK11730 569 RDAIDVLFEAKRFGQKNGKGFYRYE 593 (715)
T ss_pred hHHHHHHHHCCCCccccCCEeEecc
Confidence 7899999999999999999999995
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=176.30 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCC--Cc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF--KP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 535 (561)
.+.+|.||++.++++||++++++| + +|++||.++..++|||+ |||+++|.+|+|..+++++.+...+++++ .|
T Consensus 494 ~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~~ 568 (714)
T TIGR02437 494 CPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDG 568 (714)
T ss_pred cccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccch
Confidence 346999999999999999999999 5 79999999999999999 99999999999999999999988888754 35
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+++|++|+++|++|+|+|+|||+|+
T Consensus 569 ~~~l~~~v~~G~lG~K~g~GfY~y~ 593 (714)
T TIGR02437 569 RDAIDALFEAKRLGQKNGKGFYAYE 593 (714)
T ss_pred hHHHHHHHHCCCCcccCCCEEEecc
Confidence 7899999999999999999999994
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=148.95 Aligned_cols=171 Identities=22% Similarity=0.260 Sum_probs=122.9
Q ss_pred cceEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 146 ~~~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.+++|+||| +|.||+++|..|..+|++|++||++... . .. +.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----------------------~~------------~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----------------------AE------------DIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----------------------HH------------HHH
Confidence 568999998 8999999999999999999999986310 0 00 225
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCCCCCeEE--EEeC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve--iv~~ 300 (561)
.+||+||+|+|++ ...++++++.+ +++++||++++|.. ++..+.+... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~--~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIH--LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHH--HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 6899999999965 45788889888 89999999988863 4566665543 3699999998876543322 4445
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEcc-cccchhhhH--HHHH--HHHHHHHHHcCCCHHHH
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRM--FFPY--TQAAFLLVERGTDLYLI 357 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i~nrl--~~~~--~~ea~~l~~~G~~~~~I 357 (561)
+.++++.++.+.++++.+|..++.++. ....++..+ +.-+ +.++..+.+.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 567888999999999999999999873 344433222 2112 23445555556665554
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=137.72 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=135.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+... +.| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 479999999999999999999998 89999 99988765422 222 1122333
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~ 300 (561)
+.+++||+||.|++ ++...+++.++.+.+.++++|+|.+++++++.+.+..+.. ++++.+|+.|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 34678999999996 5667888888888888889888998999999998776544 788888888876654444 5567
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEccc--c---cch--hhhHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFA--VNRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~---G~i--~nrl~~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (561)
..++++.++.++++++.+|. ++++++. . |.. ...++ ..+.+++. ....|+++++.-.++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~-~~~~~a~~ea~~~~Gl~~~~a~~~~~ 202 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYI-FLAIEALADGGVAAGLPRDVALSLAA 202 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77899999999999999999 7776431 0 111 11112 22222211 3457899999888876
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-13 Score=131.63 Aligned_cols=189 Identities=18% Similarity=0.177 Sum_probs=134.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
|+||+|||+|.||.+++..|.++| ++|.++|++++..+...+. .+ +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence 468999999999999999999999 7899999999876553311 01 1112333 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~ 301 (561)
.+.+||+||+|+| +....++++++.+.+ +++|+|.+++++...+...+++..+++..||+.|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 4678999999997 556778888887766 567888899999999988777667899999998876655454 56777
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEccc--ccch-hh----hHHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGFA-VN----RMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~i-~n----rl~~~~~~ea~~l-~~~G~~~~~ID~a~~ 362 (561)
.++++..+.+..+++.+|..+.+..+. .... .. ..++.++...... ...|+++++...++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAA 203 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999999999744443221 1111 11 1222222222332 347888888776665
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-13 Score=128.87 Aligned_cols=189 Identities=20% Similarity=0.226 Sum_probs=135.1
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.+.++|++||+|.||.+|+.+|.++||+|++|||+.++++... +.|... ..+..|..
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~v------------~~sPaeVa 89 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGARV------------ANSPAEVA 89 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchhh------------hCCHHHHH
Confidence 3578999999999999999999999999999999999887633 444211 12233557
Q ss_pred CCCCEEEEeccCChhhHHHHHHH--HHhhcCCCceeeecCCCCC---HHHHHhhccCccceeccccc-CCCCC------C
Q 008576 225 KDVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTID---LNLIGERTYSKDRIVGAHFF-SPAHV------M 292 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~---~~~l~~~~~~~~r~ig~h~~-~P~~~------~ 292 (561)
++||+||.+||....++..++.. +...++++.......|++. ..++++.+.+. +..|. .|++. .
T Consensus 90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~ 165 (327)
T KOG0409|consen 90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEE 165 (327)
T ss_pred hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhc
Confidence 89999999999888887777754 3333334433312233333 34777665432 33443 35543 3
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-ccc---chhhhHHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---~i~nrl~~~~----~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
..+.|+.+ .++++++...++++.+||+.+.++. ..| .+.|+++.+. +.|++.+.+ .|+++..+-.++.
T Consensus 166 G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln 242 (327)
T KOG0409|consen 166 GTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILN 242 (327)
T ss_pred CeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 45666666 6899999999999999999999975 344 3788887754 578888875 6899999888887
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=133.86 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=134.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
+.+||+|||+|.||.+|+..|+++| ++|+++|++++ .++.... ..| +..+.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~ 58 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHN 58 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCC
Confidence 3469999999999999999999998 78999999764 3333211 011 112233
Q ss_pred c-cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCC-CeEEEE
Q 008576 221 Y-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-PLLEIV 298 (561)
Q Consensus 221 ~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~-~lveiv 298 (561)
. +.+.+||+||.||+ ++...+++.++.+.+.++++|+|..++++++.+.+.+++..++++.||+.|.... .+.-++
T Consensus 59 ~~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~ 136 (279)
T PRK07679 59 KKELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS 136 (279)
T ss_pred HHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence 3 34678999999998 4556677788888888889999988999999898877655679999998776553 344455
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEccc--c---cchh--hhHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~---G~i~--nrl~~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (561)
+++..+++..+.+++++..+|+.. ++.+. . |... .. +...+.|++. .+..|+++++...++.
T Consensus 137 ~~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~~ 207 (279)
T PRK07679 137 PSKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLIL 207 (279)
T ss_pred eCCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 777788999999999999999844 43321 1 1100 01 1223334433 3467889888887775
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-13 Score=134.74 Aligned_cols=183 Identities=19% Similarity=0.221 Sum_probs=125.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.+. ...++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence 5899999999999999999999999999999998876532 2221 122233 45789
Q ss_pred CCEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceeccccc-CCCCC-------CC
Q 008576 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~~-------~~ 293 (561)
||+||.|+|++..++..+.. .+.+.++++++++ ++|+.++. ++++.+... |.+|. .|+.. ..
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~----g~~~ldapV~g~~~~a~~g~ 132 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAK----GFSMMDVPVGRTSDNAITGT 132 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEccCCCCHHHHHhCc
Confidence 99999999987655544432 3555677788775 55555554 444443211 33333 23322 23
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-cc---chhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---~i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
++-++.+ +++.++.++++++.+|+.++++++. .| .++|+++. ..+.|++.+.+ .|++++.+-.++.
T Consensus 133 l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 133 LLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred EEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 3334444 8899999999999999999998852 23 25565544 33579988876 6899999877776
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=131.17 Aligned_cols=189 Identities=16% Similarity=0.162 Sum_probs=138.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +...++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 379999999999999999999885 699999999886653210 12 1122333 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEE-EeCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTN 301 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lvei-v~~~ 301 (561)
.+.+||+||.|++ ++...++++++.+.++++++|+|...+++++.+.+.++...+++..+|+.|......+.. .+++
T Consensus 60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 4689999999998 577888889998888889999999999999999998876678999999999887666554 4677
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEccc--ccc-hhhhH---HHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-AVNRM---FFPYTQAAF--LLVERGTDLYLIDRAIT 362 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~-i~nrl---~~~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (561)
..+++..+.+..++..+|+. +.+.+. ..+ .+.-. +..++.|++ ..+..|++.++-.....
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAA 205 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78899999999999999987 444431 110 01111 112233332 23456777777666554
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=140.18 Aligned_cols=221 Identities=17% Similarity=0.170 Sum_probs=142.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||.+||..|.++|++|.+|+++++..+... ....+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence 4799999999999999999999999999999876543321 11122211 112333 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHh-hcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCC------------C
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V 291 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------------~ 291 (561)
||+||+|+|. .....+++++.+ .++++++|++.+|.. .+..+........+|++.||+.... .
T Consensus 61 aDlVilavP~--~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPV--DATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCH--HHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 9999999995 467889999987 478888887655543 2445555545678999999975431 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc-ccccchhhhHHH--HHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF--PYTQAAFLLVERGTDLYLIDRAITKFGMP- 367 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~--~~~~ea~~l~~~G~~~~~ID~a~~~~G~~- 367 (561)
+..+.++++..++++.++.+.++++.+|..++.+. +....++..+.. .++.+++ ....+.+....-... +-||.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~la-~~gfrd 216 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALRLA-AGGFRD 216 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHhhh-cccccC
Confidence 34466888888999999999999999999998886 345555443322 3444444 112222222221111 22332
Q ss_pred ------ccHHHHHHHhchH--HHHHHHhhhHhh
Q 008576 368 ------MGPFRLADLVGFG--VAIATGMQFIEN 392 (561)
Q Consensus 368 ------~GPf~~~D~~Gld--~~~~~~~~l~~~ 392 (561)
.-|=.|.|.+--. .+...++.+...
T Consensus 217 ~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~ 249 (359)
T PRK06545 217 ITRIASSDPGMWRDILESNAEALLDALDEWIED 249 (359)
T ss_pred CccccCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2577777776532 344444444433
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=131.76 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=110.3
Q ss_pred EEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
||+|||+|.||.++|..|.++|+ +|++||++++.++.+. +.|..+ ...+.+++.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHhc
Confidence 79999999999999999999996 7899999998766532 233211 1123333456
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHHhhccCccceecccccCC------CC------CCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHFFSP------AH------VMP 293 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~ig~h~~~P------~~------~~~ 293 (561)
||+||.|+|. ....+++.++.+ ++++++|++.+|+.. +.+..... .+.+|++.||+.+ .. ...
T Consensus 59 aD~Vilavp~--~~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~ 134 (275)
T PRK08507 59 CDVIFLAIPV--DAIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEGK 134 (275)
T ss_pred CCEEEEeCcH--HHHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCCC
Confidence 9999999994 455677888888 888998877555322 22222111 2357999999853 22 244
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+.+++.+.++++.++.+.++++.+|..++.+++
T Consensus 135 ~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 135 VVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 6677888888999999999999999999998874
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=126.24 Aligned_cols=145 Identities=20% Similarity=0.226 Sum_probs=99.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
|+||+|||+|.||.+||.+|+++|++|++||++++++++.. +.+ ++...+. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence 57999999999999999999999999999999998877643 222 2334444 4468
Q ss_pred CCCEEEEeccCChhhHHHHHHH--HHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCC-------CC
Q 008576 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH-------VM 292 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~-------~~ 292 (561)
+||+||.|+|.+.+ .++++.. +.+.+.++++|+. +|+.+++ ++++.+.. .|.||.. |+. ..
T Consensus 57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchh-hhhhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence 89999999997555 4566666 7888888987763 4445544 44444321 2455553 332 24
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
.+.-++.| +++.++.++++++.+++.+++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~ 159 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYH 159 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEE
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCcee
Confidence 56666676 789999999999999998874
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=127.78 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=119.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc--cc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 222 (561)
.++|+|+|+|.||+++|..|..+|+.|.+++++.. .++.+. +.|..+. .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~-----------~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL-----------ELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh-----------hcCcccc-----------cccchhhh
Confidence 46999999999999999999999998876666554 333322 3343321 1112 34
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCC------CCCe
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------VMPL 294 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------~~~l 294 (561)
.+.++|+||.||| +....++++++.+.+++++||+..+|.. ++..+.+..+...+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 5788999999999 7778899999999999999999888865 3556655554323899999997662 2455
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.+++++.++.+.++.++++++.+|..++.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 67888888899999999999999998888876
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=137.11 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=118.9
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
+||+||| +|.||.++|..|..+|++|+++|++++....... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 4899997 7999999999999999999999999876533111 112 1122333 4578
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC--CCHHHHHhhccCccceecccccCC----CCCCCeEEEEe
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSP----AHVMPLLEIVR 299 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P----~~~~~lveiv~ 299 (561)
+||+||.|+|. .....+++++.+.++++++|++.+|. .+...+.+.++...+|++.||+.. ......+.+++
T Consensus 58 ~aDvVIlavp~--~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPI--NVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCH--HHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 99999999994 45568889999989999999887774 345566666655568999998743 33466777888
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
++.++++.++.+.+++..+|..++.++
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999988876
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=131.22 Aligned_cols=181 Identities=20% Similarity=0.241 Sum_probs=127.9
Q ss_pred EEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCCCCEE
Q 008576 152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 230 (561)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV 230 (561)
|||+|.||.+||..|+++|++|++||+++++++... +.|. ..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876532 2221 122333 457899999
Q ss_pred EEeccCChhhHHHHH---HHHHhhcCCCceeeecCCCCCHHH---HHhhccCccceecccccC-CCCC-------CCeEE
Q 008576 231 IEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFFS-PAHV-------MPLLE 296 (561)
Q Consensus 231 ieav~e~~~~k~~v~---~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~h~~~-P~~~-------~~lve 296 (561)
|.|||.+..+ +.++ ..+.+.+++++++++ +|++++.. +++.+.. .|.+|.. |+.. ..+..
T Consensus 57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence 9999965544 4455 567777788887764 44666543 3333321 2555553 4332 34444
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~~-~~G 365 (561)
++.| +++.++.+++++..+|+.++++++ ..|. ++|+++.. .+.|++.+.+ .|++++++..++. +.|
T Consensus 131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 5555 678899999999999999999986 4554 56766553 3679998876 5899999999988 544
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=135.54 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=127.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc---
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--- 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 222 (561)
.+.+|+|||+|.||.+||..|+++|++|++|||++++.+...+. ....|.. .+....+++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~-------~~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh-------hhhcCCc----------ccccCCCHHHHH
Confidence 35689999999999999999999999999999999988764321 0001210 011222332
Q ss_pred -ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhccCccceecccccC-CCC-------C
Q 008576 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFS-PAH-------V 291 (561)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~r~ig~h~~~-P~~-------~ 291 (561)
.++.+|+||.|||.+..+ ++++..+.+.+.++.||+..+++.+- .++++.+.. .|+||+. |+. .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV-~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~~ 142 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPV-DQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGARN 142 (493)
T ss_pred hcCCCCCEEEEECCCcHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhcC
Confidence 244599999999976655 45557888888888888754433332 234443321 2566652 443 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCc------eEEEcc-cccc---hhhhHH-HH---HHHHHHHHHHc--CCCHH
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AVNRMF-FP---YTQAAFLLVER--GTDLY 355 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~---i~nrl~-~~---~~~ea~~l~~~--G~~~~ 355 (561)
++ .++.| .++++++.++++++.++.. ++++++ ..|. ++|+.+ .. .+.|++.+.+. |++++
T Consensus 143 G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~ 218 (493)
T PLN02350 143 GP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNE 218 (493)
T ss_pred CC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Confidence 34 35555 4889999999999999853 778876 2333 344443 33 35799988864 88999
Q ss_pred HHHHHHH
Q 008576 356 LIDRAIT 362 (561)
Q Consensus 356 ~ID~a~~ 362 (561)
++-.++.
T Consensus 219 ~l~~vf~ 225 (493)
T PLN02350 219 ELAEVFA 225 (493)
T ss_pred HHHHHHH
Confidence 9998854
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=128.93 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=122.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.|.. ...+..+.+++||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~------------~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV------------SVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe------------ecCCHHHHHhcCC
Confidence 799999999999999999999999999999874 2221 122311 1112224468999
Q ss_pred EEEEeccCChhhHHHHHHH--HHhhcCCCceeeecCCCCCHH---HHHhhcc-CccceecccccCCC----CCCCeEEEE
Q 008576 229 MVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA----HVMPLLEIV 298 (561)
Q Consensus 229 lVieav~e~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~----~~~~lveiv 298 (561)
+||.|+|++.+++..++.. +.+.+.++.+|+. +|+.++. ++++.+. +..+|+. +|+... ....+.-++
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV 135 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence 9999999876665555432 4555677887754 4555544 4444442 2333444 233211 123334444
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEccc-ccc---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.| +++.++.++++++.+|+.++++++. .|. ++|+++.. .+.|++.+.+ .|++++.+-.++.
T Consensus 136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~ 205 (292)
T PRK15059 136 GG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALM 205 (292)
T ss_pred cC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44 7899999999999999999999863 332 56666553 2578988876 5899999877776
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=135.13 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=129.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc----
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (561)
.+|+|||+|.||.+||..|+++||+|++||++++..+...+. ....|. .+..+.++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK-------AKEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh-------hhhcCC-----------cceecCCHHHHHhc
Confidence 589999999999999999999999999999999988764421 001121 1223334432
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCCC-------CC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MP 293 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~~-------~~ 293 (561)
+.++|+||.+|+.. +..+++++++.+.+.++.||+..+++.+.+ ...+.+. --|+||+. |+.. ++
T Consensus 64 l~~~d~Iil~v~~~-~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAG-EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCCh-HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence 34689999999854 455667788999999999888766665543 2222221 12666653 4432 33
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCc------eEEEcc-cccc----hhhhHHHHH---HHHHHHHHH--cCCCHHHH
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF----AVNRMFFPY---TQAAFLLVE--RGTDLYLI 357 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~----i~nrl~~~~---~~ea~~l~~--~G~~~~~I 357 (561)
. ++.| .++++++.++++++.++.. ..++++ ..|. +.|-+...+ +.|++.+.+ .|++++++
T Consensus 139 -~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l 214 (470)
T PTZ00142 139 -S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL 214 (470)
T ss_pred -E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3 5554 3789999999999999977 567775 3442 334444433 579999985 67899999
Q ss_pred HHHHH
Q 008576 358 DRAIT 362 (561)
Q Consensus 358 D~a~~ 362 (561)
-.++.
T Consensus 215 ~~v~~ 219 (470)
T PTZ00142 215 SEVFN 219 (470)
T ss_pred HHHHH
Confidence 88886
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=129.63 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=114.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
.++||+|||+|.||.++|..|...|+ +|++||++++.++.+. +.|... ....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHH
Confidence 45799999999999999999999995 8999999998766532 223211 112223 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCCC---------
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV--------- 291 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~--------- 291 (561)
.+.+||+||+|+|. .....+++++.+.++++++|++.+|.- .+..+....+...+|++.||+.+...
T Consensus 63 ~~~~aDvViiavp~--~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPV--GASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCH--HHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 47899999999995 445678888888888888776544422 13344444444558999999875332
Q ss_pred ---CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 292 ---~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
...+.+++...++++.++.+.++++.+|..++.++
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 23355777777889999999999999999988876
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=124.80 Aligned_cols=189 Identities=10% Similarity=0.093 Sum_probs=124.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.+.....+. .++ +.+.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-----------~~g~~~~~s~----------~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMK-----------EDRTTGVANL----------RELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCcccCCH----------HHHHhhcCC
Confidence 3799999999999999999999999999999998876633 2221110000 011 23567
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhc-cCccceecccccCCCC--CCCeEEEEeCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT-YSKDRIVGAHFFSPAH--VMPLLEIVRTN 301 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~-~~~~r~ig~h~~~P~~--~~~lveiv~~~ 301 (561)
+|+||.|+|.+ ..++++.++.+.++++.+|++.+++.+.+ ++.+.+ ....+|+..+..-.+. ...+.-++.|
T Consensus 60 ~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG- 136 (298)
T TIGR00872 60 PRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG- 136 (298)
T ss_pred CCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC-
Confidence 99999999965 56778889999888888887655554332 333333 2223344433322111 1123333344
Q ss_pred CCcHHHHHHHHHHHHhcCC---ceEEEccc-ccc---hh-hhHHHHH---HHHHHHHHHc-C--CCHHHHHHHHH
Q 008576 302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AV-NRMFFPY---TQAAFLLVER-G--TDLYLIDRAIT 362 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~G~---i~-nrl~~~~---~~ea~~l~~~-G--~~~~~ID~a~~ 362 (561)
+++.++.++++++.++. ..+++++. .|. ++ |-+.... +.|++.+.+. | ++++++-.+|+
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 78999999999999986 46777752 332 23 3344333 4688888875 4 59999999987
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=134.09 Aligned_cols=199 Identities=16% Similarity=0.188 Sum_probs=130.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~ 221 (561)
+||+|||+|.||.++|..|+++||+|++||++++.++...+.. ..+.+...+.. .++++.++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGK----------SPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCC----------CCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 3799999999999999999999999999999999877633210 00000001111 1345566666
Q ss_pred c-ccCCCCEEEEeccCChh--------hHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHh-hccC--c-----ccee
Q 008576 222 E-SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGE-RTYS--K-----DRIV 281 (561)
Q Consensus 222 ~-~l~~aDlVieav~e~~~--------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~-~~~~--~-----~r~i 281 (561)
+ .+++||+||.|||.... ....+.+.+.+.++++++|+. +|++++. ++.. .+.. . .-.+
T Consensus 71 ~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 4 48899999999997542 456667788888888887764 4555443 3322 2111 0 0112
Q ss_pred cccccCCCCCCC--e-------EEEEeCCCCcHHHHHHHHHHHHhcC-CceEEEccc-cc---chhhhHH----HHHHHH
Q 008576 282 GAHFFSPAHVMP--L-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQA 343 (561)
Q Consensus 282 g~h~~~P~~~~~--l-------veiv~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d~-~G---~i~nrl~----~~~~~e 343 (561)
.. +|....+ + -.++.| .+++..+.+++++..++ +.++.+++. .+ .++++.+ .++++|
T Consensus 150 ~~---~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE 224 (411)
T TIGR03026 150 AY---NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANE 224 (411)
T ss_pred EE---CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3332211 1 134545 48899999999999998 577777652 22 2455555 356899
Q ss_pred HHHHHH-cCCCHHHHHHHHH
Q 008576 344 AFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 344 a~~l~~-~G~~~~~ID~a~~ 362 (561)
+..+.+ .|++++++-.++.
T Consensus 225 ~~~la~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 225 LARICEALGIDVYEVIEAAG 244 (411)
T ss_pred HHHHHHHhCCCHHHHHHHhC
Confidence 999987 5899999988886
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=130.87 Aligned_cols=199 Identities=14% Similarity=0.155 Sum_probs=127.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
.++||+|||+|.||.++|..|+++||+|++||+++++++..... +.+.+.+.++. +++..
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~ 69 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRA 69 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceee
Confidence 36799999999999999999999999999999999988753211 01111111111 23444
Q ss_pred cccccccCCCCEEEEeccCC--------hhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCc-cc--e--e
Q 008576 218 VLDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSK-DR--I--V 281 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~e~--------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~-~r--~--i 281 (561)
+++ +++||+||.|||.+ ......+++.+.++++++++|+. .|+.++. ++...+... .. + .
T Consensus 70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~-~STv~pgtt~~~~~~l~~~~~~~~~~~~ 145 (415)
T PRK11064 70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL-ESTSPVGATEQMAEWLAEARPDLTFPQQ 145 (415)
T ss_pred ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE-eCCCCCCHHHHHHHHHHHhccCCccccc
Confidence 433 45899999999964 25566677889899999987753 3444332 333222110 00 0 0
Q ss_pred ---cccc---cCCCC--CCC-------eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-cc---chhhhHHH----
Q 008576 282 ---GAHF---FSPAH--VMP-------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF---- 338 (561)
Q Consensus 282 ---g~h~---~~P~~--~~~-------lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---~i~nrl~~---- 338 (561)
+..| ++|-. -+. +.-++.| .+++..+.+.++++.+++.++.+++. .+ .++++.+.
T Consensus 146 ~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~i 223 (415)
T PRK11064 146 AGEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNI 223 (415)
T ss_pred ccCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 0011 24411 111 1134544 47899999999999999877777642 22 24555544
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 339 PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 339 ~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
+++||+..+.+ .|+++.++-+++.
T Consensus 224 a~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 224 AFANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 45799988887 5899999988775
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-12 Score=126.61 Aligned_cols=153 Identities=13% Similarity=0.078 Sum_probs=111.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c-
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 224 (561)
.++|+|||+|.||.++|..|.+.|++|+++|+++.. +.+. ..|. ...++.++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence 458999999999999999999999999999998632 1111 1121 11223332 3
Q ss_pred CCCCEEEEeccCChhhHHHHHHHH-HhhcCCCceeeecCCC--CCHHHHHhhccCccceecccccCCCCCC------CeE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL 295 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l-~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~~~------~lv 295 (561)
.++|+||.|+| +....++++++ ...++++++|++.+|. .++..+.+.++...+|++.||+.++... ..+
T Consensus 91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 46999999999 44567788888 5667889999888774 5566777766555689999999877532 111
Q ss_pred EEEeC----CCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 296 eiv~~----~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
-+++. +.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 12221 56788899999999999999999886
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=123.14 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=121.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC--
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-- 225 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~-- 225 (561)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+.++ +.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHhC
Confidence 799999999999999999999999999999998766532 2221 11223322 22
Q ss_pred -CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccC-CCCC------CCeE
Q 008576 226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAHV------MPLL 295 (561)
Q Consensus 226 -~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~-P~~~------~~lv 295 (561)
.+|+||.|+|.+.. .+.++..+.+.++++.+|+..+++.+ ..++.+.+.. .|.+|.. |+.. ....
T Consensus 58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence 37999999996644 45566778777788887764433323 2344444422 1445543 3321 1223
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCC---ceEEEccc-ccc---hhhhHHHH----HHHHHHHHHH-cC--CCHHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RG--TDLYLIDRAI 361 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~G~---i~nrl~~~----~~~ea~~l~~-~G--~~~~~ID~a~ 361 (561)
-++.| ++++++.++++++.+|. ..+++++. .|. ++|+++.. .+.|++.+.+ .| ++++++-.+|
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 133 LMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred EEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 33344 78899999999999997 67888752 222 45555442 2579999987 46 7898888888
Q ss_pred H
Q 008576 362 T 362 (561)
Q Consensus 362 ~ 362 (561)
+
T Consensus 210 ~ 210 (299)
T PRK12490 210 R 210 (299)
T ss_pred c
Confidence 6
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-11 Score=121.56 Aligned_cols=205 Identities=16% Similarity=0.116 Sum_probs=134.0
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCCCCEEEEeccCC
Q 008576 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 237 (561)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVieav~e~ 237 (561)
|.+||..|+++||+|++||++++.++... .+.....| +..+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999998654311 11122222 2333343 4578999999999964
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHH----HHhhccCccceecccccCCCCC----CCeEEEEeCC------CC
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT 303 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~----l~~~~~~~~r~ig~h~~~P~~~----~~lveiv~~~------~t 303 (561)
. ..++++..+.+.++++++|+ ++|+.+... +.+.+..+.+.+|.||++|... ...++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 3 46778888999899898876 455555443 3345554556778888876542 2234555543 33
Q ss_pred cHHHHHHHHHHHHhcCCceEEEcccccc---hhhhHHHHH----HHHHHHHHHc-CCCHHHHHHHHH-hcCCCccHHHHH
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFPY----TQAAFLLVER-GTDLYLIDRAIT-KFGMPMGPFRLA 374 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~d~~G~---i~nrl~~~~----~~ea~~l~~~-G~~~~~ID~a~~-~~G~~~GPf~~~ 374 (561)
+++.++.++++++.+|+.+++++...|. ..|+++.+. ..|++.+.+. |.+|.+.-+-+- .. -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 8899999999999999989888743333 345555543 4688887764 556665443332 21 13556666
Q ss_pred HHhchHHHHHHH
Q 008576 375 DLVGFGVAIATG 386 (561)
Q Consensus 375 D~~Gld~~~~~~ 386 (561)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 667776655543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-11 Score=121.26 Aligned_cols=182 Identities=18% Similarity=0.160 Sum_probs=122.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc----c
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----F 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----l 224 (561)
||+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+.++ +
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhhc
Confidence 899999999999999999999999999999998876532 2221 11222222 2
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccC-CCCC------CCeE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAHV------MPLL 295 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~-P~~~------~~lv 295 (561)
.++|+||.++|.+.. ..+++..+.+.++++.++++.+++.+ ..++++.+.. .|.+|.. |+.. ..+
T Consensus 58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~- 131 (301)
T PRK09599 58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY- 131 (301)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC-
Confidence 347999999996544 35566778778888887765443333 2234443322 1455543 3322 123
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCC----ceEEEccc-ccc---hhhhHHH-HH---HHHHHHHHH---cCCCHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNRMFF-PY---TQAAFLLVE---RGTDLYLIDRA 360 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk----~~v~v~d~-~G~---i~nrl~~-~~---~~ea~~l~~---~G~~~~~ID~a 360 (561)
.++.+ .++++++.++++++.+++ ..+++++. .|. ++|+.+. .. +.|++.+.+ .|++++++-.+
T Consensus 132 ~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 132 CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444 488999999999999998 78888862 333 3444433 32 578988886 46899999999
Q ss_pred HH
Q 008576 361 IT 362 (561)
Q Consensus 361 ~~ 362 (561)
|+
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 87
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-12 Score=126.51 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=88.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ +
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~------------------------------------p 195 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG------------------------------------P 195 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++++..|.+.+..++.|+|+++++++|++||+++.
T Consensus 196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 37778999999887788999999999999999999999999999999998754
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=119.98 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=124.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
++||+|||+|+||.+|+..|.++| .+|++.+++++..+...+ + ++... +++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~----------~------------~g~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAA----------E------------YGVVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHH----------H------------cCCcc-cCcHH
Confidence 368999999999999999999999 589999999998763221 1 11111 2333
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEE-eC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RT 300 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv-~~ 300 (561)
+.+..+|+||.||. ++...++++++.+ ..++.+|+|...+++++.+...++ ..+++..+|+.|......+..+ .+
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 55788999999995 7888899999988 778999999999999999999998 7889999999998876666644 56
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEE
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
...+++..+.+.++++.+|+...+
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v 157 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEV 157 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEe
Confidence 788999999999999999976554
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-12 Score=126.47 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=88.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-P----------------------------------- 199 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++||+++..
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~ 253 (255)
T PRK08150 200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVK 253 (255)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 367788999988877889999999999999999999999999999999988764
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-12 Score=130.32 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=88.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++++.++|++|+.. | +
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~--~----------------------------------p 216 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARI--P----------------------------------L 216 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--C----------------------------------H
Confidence 579999999999999999999999999999999999999984 2 2
Q ss_pred CcHHHHHHHHHHhhc-CChHHHHHHHHHHHhHHhcCHHHH--------HHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~-~~~~~~l~~E~~~~~~l~~s~~~~--------~~~~aF~~kr~~~k~ 134 (561)
.++..+|++++.+.. .+++++++.|...+..+..|+|++ +++.+|++||+|...
T Consensus 217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 477889999998766 469999999999999999999997 599999999988654
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-12 Score=126.78 Aligned_cols=99 Identities=25% Similarity=0.305 Sum_probs=88.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++.+.|.+++++++..+ +
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 206 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN------------------------------------Q 206 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHh--cCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~--~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.+...+|++++.....++++++..|.+.+..++ .++++++++++|++||+++|.+
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 477889999998888889999999998888875 5999999999999999998864
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-12 Score=126.34 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=88.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||+++++++|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS------------------------------------L 201 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998742 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.....++++++..|.+.+..++.|+|+++++++|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 47888999999988889999999999999999999999999999999987653
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=129.76 Aligned_cols=193 Identities=16% Similarity=0.225 Sum_probs=117.8
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH----HHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA----NLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
||+|||+|.||.++|..++. ||+|++||+++++++...+.+.. .++..... ...+++.+++. +.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhh
Confidence 79999999999999988875 99999999999998876543211 11111110 11234444544 44
Q ss_pred cCCCCEEEEeccCChh---------hHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccCCCCC
Q 008576 224 FKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHV 291 (561)
Q Consensus 224 l~~aDlVieav~e~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~P~~~ 291 (561)
+.+||+||+|||++.+ ...++++.+.. ++++++|+ ..||+++. ++...+. +. ++.| +|...
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l 143 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYR--TE--NIIF-SPEFL 143 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhh--cC--cEEE-Ccccc
Confidence 7899999999998743 33456677776 57777664 44555544 3333221 11 2222 44422
Q ss_pred C--Ce--------EEEEeCCCCcHHHHHHHHHHHHh--cCCc-eEEEcc-cccc---hhhhHHH----HHHHHHHHHHH-
Q 008576 292 M--PL--------LEIVRTNQTSPQVIVDLLDIGKK--IKKT-PIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE- 349 (561)
Q Consensus 292 ~--~l--------veiv~~~~t~~e~~~~~~~l~~~--lGk~-~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~~- 349 (561)
. .+ ..++.+ +++..+.+.+++.. ++.. ++++.+ ..+. ++++.+. +++||...+.+
T Consensus 144 ~~G~a~~d~~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 144 REGKALYDNLHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred cCCcccccccCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 223333 34556777777744 4543 334554 2222 4555544 45799988876
Q ss_pred cCCCHHHHHHHHH
Q 008576 350 RGTDLYLIDRAIT 362 (561)
Q Consensus 350 ~G~~~~~ID~a~~ 362 (561)
.|+++.++-.++.
T Consensus 221 ~GiD~~eV~~a~~ 233 (388)
T PRK15057 221 LGLNTRQIIEGVC 233 (388)
T ss_pred hCcCHHHHHHHhc
Confidence 5899999998884
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=121.84 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=118.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
|+||+|||+|.||.+|+..|.++| ++|++|+++.+. ++... .. ...+..+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DK-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HH-----------cCCeEEeCCH
Confidence 468999999999999999999998 789999987532 22211 00 0011222333
Q ss_pred -cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEE-e
Q 008576 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-R 299 (561)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv-~ 299 (561)
+.+.++|+||.|+| ++...++++++.+.++++++|+|...++++.++.+.++. .+++.++|+.|......+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 34689999999998 566778889998888888888899999999999987753 489999999998776665544 5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6678899999999999999987654
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-12 Score=122.14 Aligned_cols=97 Identities=23% Similarity=0.235 Sum_probs=90.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||.++++++|.+|+++|+..+ +
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~------------------------------------~ 234 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS------------------------------------P 234 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 6899999999999999999999999999999999999999952 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++++.|+.++.+...++.+++..|...|...+.++|.+|++.+|.+||+++.
T Consensus 235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~ 287 (290)
T KOG1680|consen 235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF 287 (290)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence 37778999999999999999999999999999999999999999999888765
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-13 Score=142.53 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=116.6
Q ss_pred eEEEEEcCccchHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
.||+|||+|.||.+++. .+ +.+|++|++||++++.++.....+.+.+. ... ...++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~--------~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELG--------APLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcC--------CCeEEEEeCCH
Confidence 38999999999998665 23 55688999999999998876554433322 111 11356777886
Q ss_pred -cccCCCCEEEEecc----------CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccC--ccceecccccCC
Q 008576 222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP 288 (561)
Q Consensus 222 -~~l~~aDlVieav~----------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~--~~r~ig~h~~~P 288 (561)
+++++||+||++++ |+..+|..+++++.+.+++++++.+++|...+.+++..+.. | +.+.+||.||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 57899999999998 35888999999999999999999999999999999988764 6 8999999999
Q ss_pred CCCC-----CeE--EEEeCCCCcHHHHHHHHHHHHhcCCc
Q 008576 289 AHVM-----PLL--EIVRTNQTSPQVIVDLLDIGKKIKKT 321 (561)
Q Consensus 289 ~~~~-----~lv--eiv~~~~t~~e~~~~~~~l~~~lGk~ 321 (561)
+..+ +.. -++.... .+......+.+.+|..
T Consensus 148 v~i~t~~~~k~~~~rviG~c~---~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 148 MAELTWALNRYTPIKTVGLCH---GVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHHhCCCCEEEECC---cHHHHHHHHHHHhCCC
Confidence 8653 222 2332211 1444555666667753
|
linked to 3D####ucture |
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-12 Score=125.21 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=88.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-T----------------------------------- 200 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+++.
T Consensus 201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 37778999999888888999999999999999999999999999999987764
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-12 Score=125.77 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=86.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 198 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD------------------------------------T 198 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~ 131 (561)
.+...+|+.++.....++++++..|...+..++.++|+++++.+|++||+|
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 377789999988777788999999999999999999999999999999864
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-12 Score=124.88 Aligned_cols=97 Identities=30% Similarity=0.433 Sum_probs=88.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS------------------------------------P 201 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.....+++++++.|.+.+..++.|+++++++++|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 254 (257)
T PRK07658 202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 37788999999887778999999999999999999999999999999987754
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=116.97 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=110.0
Q ss_pred EEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 149 KVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
+|+|||+|.||.+|+..|.++|+ +|+++|++++..+...+. . ..+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHHH
Confidence 79999999999999999999984 799999998876542210 0 012223333 34
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCC-CCeEEEEeCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQ 302 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-~~lveiv~~~~ 302 (561)
+.++|+||.|++ +....++++++.+.+.++++|++.++++++..+...++ .+++..+|..|... ....-++.+..
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 689999999997 55567888888888888888888888899988887764 34556666544322 12223445666
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEc
Q 008576 303 TSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
.+++..+.+.+++..+|. ++.+.
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEC
Confidence 788888999999999995 55554
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-12 Score=125.81 Aligned_cols=96 Identities=26% Similarity=0.388 Sum_probs=87.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 207 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS------------------------------------P 207 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.++..+|++++.....++++++..|.+.+..++.|+|+++++.+|++||+++
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 3777889999988888899999999999999999999999999999998764
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-12 Score=126.43 Aligned_cols=97 Identities=16% Similarity=0.242 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ +
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 221 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP------------------------------------T 221 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+++.
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778999999888888999999999999999999999999999999998764
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-12 Score=125.48 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=88.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 210 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS------------------------------------P 210 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++++..|.+.+..++.++|+++++++|++||+++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778999999988888999999999999999999999999999999987764
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-12 Score=124.51 Aligned_cols=97 Identities=32% Similarity=0.314 Sum_probs=87.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||+++++++|.+++++++.. | +
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~----------------------------------~ 205 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARM--P----------------------------------P 205 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhC--C----------------------------------H
Confidence 578999999999999999999999999999999999999874 2 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.....++++++..|.+.+..++.|+++++++++|++||+++.
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 37788999999888888999999999999999999999999999999987654
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-11 Score=140.88 Aligned_cols=187 Identities=16% Similarity=0.130 Sum_probs=132.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-+||+|||+|.||.+||.+|+++||+|++||+++++.+... +.|. ...++. +.++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~~~s~~e~a~ 59 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGG-------------HRCDSPAEAAK 59 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------eecCCHHHHHh
Confidence 46899999999999999999999999999999998877633 2332 112333 4567
Q ss_pred CCCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceec--cccc-CCCC-------
Q 008576 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAH------- 290 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig--~h~~-~P~~------- 290 (561)
+||+||.|+|++..++..++ ..+.+.+.++.+++ .+||+++. ++++.+.. .| .+|. .|+.
T Consensus 60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~ 134 (1378)
T PLN02858 60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLL 134 (1378)
T ss_pred cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHh
Confidence 89999999998876665554 35666677888775 34555554 44444422 13 4454 3443
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEE-cc-cccc---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHH
Q 008576 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRA 360 (561)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d-~~G~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a 360 (561)
...+.-++.| +++.++.++++++.+|+..+++ ++ ..|. ++|+++.. .+.|++.+.+ .|++++.+-.+
T Consensus 135 ~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 135 NGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred cCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 2445555566 7889999999999999988865 54 2333 56766653 3579998876 68999999999
Q ss_pred HH-hcC
Q 008576 361 IT-KFG 365 (561)
Q Consensus 361 ~~-~~G 365 (561)
+. +.|
T Consensus 212 l~~s~g 217 (1378)
T PLN02858 212 ISNAAG 217 (1378)
T ss_pred HhcCCc
Confidence 87 554
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-12 Score=123.90 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=87.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~------------------------------------~ 207 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG------------------------------------P 207 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC------------------------------------h
Confidence 5799999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 37788999999888888999999999999999999999999999999987654
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-12 Score=123.98 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++|+..+ +
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------~ 206 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP------------------------------------T 206 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.|...+..++.|+++++++.+|++||++..
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 37778999999888888999999999999999999999999999999987653
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.5e-12 Score=123.69 Aligned_cols=97 Identities=26% Similarity=0.390 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 204 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA------------------------------------P 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.+...+++++++.|.+.+..++.|+|+++++++|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 47788999999888888999999999999999999999999999999997764
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=123.73 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=103.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
++|+|||+ |.||+++|..|.+. |++|+.+|++.+. .++. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 59999999 99999999999864 8999999985211 1111 347
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhh---cCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCCC-----CCe
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPL 294 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~-----~~l 294 (561)
.+||+||.|+| .....++++++.++ ++++++|+..+|... +..+ .....+|+|.||+..++. +..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 66778899998876 689999988777653 3333 223346999999986643 334
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.+++. ...+.++.+.++++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 445555 345557889999999999998886
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=123.07 Aligned_cols=97 Identities=24% Similarity=0.275 Sum_probs=88.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|++|+++||||+|||++++++.+.+++++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS------------------------------------P 201 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 47778899999887888999999999999999999999999999999998764
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=122.80 Aligned_cols=97 Identities=24% Similarity=0.310 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 202 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS------------------------------------P 202 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++.+..|.+.+..++.++++++++.+|++||+++.
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 47778999999887778999999999999999999999999999999987654
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=122.90 Aligned_cols=97 Identities=26% Similarity=0.305 Sum_probs=87.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 199 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA------------------------------------P 199 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999998742 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++.++++.|...+..++.++|+++++.+|++||+++.
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778899998887788999999999999999999999999999999988754
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=123.43 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 213 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA-P----------------------------------- 213 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++.++.|...+..++.|+|+++++.+|++||+++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 37778999998887788999999999999999999999999999999987654
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=121.95 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=87.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 198 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG------------------------------------P 198 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++.++.|.+.+..++.++|+++++.+|++||+++.
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778899999887778999999999999999999999999999999887653
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=121.81 Aligned_cols=97 Identities=24% Similarity=0.292 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~------------------------------------~ 199 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS------------------------------------P 199 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF 252 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 37778999999888888999999999999999999999999999999987654
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-11 Score=122.48 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=85.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 206 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG------------------------------------P 206 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.+...+|+.++.....++++++..|.+.+..++.|+|+++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 37778999999887788999999999999999999999999999999874
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=118.45 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=103.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
|+||+|||+|.||..+|..|+++|++|++||++++.++...+.. . ....... . .....+..+++.+ .+.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~~-~-~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADR---E-----NPRYLPG-I-KLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC---c-----ccccCCC-C-cCCCCeEEeCCHHHHHh
Confidence 46899999999999999999999999999999998776543210 0 0000000 0 0011233344553 467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH-------HHHhhccCccceecccccCCCC------C-
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRIVGAHFFSPAH------V- 291 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-------~l~~~~~~~~r~ig~h~~~P~~------~- 291 (561)
+||+||.|+|. .....++.++.+.+.+++++++.++++... .+.+........ .....|.. .
T Consensus 71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence 99999999995 467788889998888899887766555432 222222210010 11112321 1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccc
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (561)
..++.+ .+ .+.+.++.+.++++..|..+....|..
T Consensus 147 ~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~ 181 (325)
T PRK00094 147 PTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVI 181 (325)
T ss_pred CcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 122333 33 368889999999999997776655543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=138.42 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=130.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
..++|+|||+|.||.+||..|+.+|++|++||+++++++... ..|.. ...+. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL-------------AGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe-------------ecCCHHHHH
Confidence 357999999999999999999999999999999998876532 22211 12233 457
Q ss_pred CCCCEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCC-------C
Q 008576 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH-------V 291 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~-------~ 291 (561)
++||+||.|||.+.+++..++. .+.+.+.++.+++ ++|++++. ++++.+.. .-.|.+|.. |+. .
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999977666555443 3556667788765 34555544 34443322 013566653 432 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc--c---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI 361 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~ 361 (561)
..+.-++.| +++.++.++++++.+|+..+++...+| . ++|+++.. .+.|++.+.+ .|++++.+-.++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344555555 678999999999999998877543233 2 56666553 3579988875 689999988888
Q ss_pred H-hcC
Q 008576 362 T-KFG 365 (561)
Q Consensus 362 ~-~~G 365 (561)
. +.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 7 544
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=122.41 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=87.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++.. | +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~--~----------------------------------~ 210 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANG--P----------------------------------T 210 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcC--C----------------------------------H
Confidence 578999999999999999999999999999999999999874 2 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++.++++.|...+..++.|+|+++++.+|++||+++.
T Consensus 211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 37778899998887788999999999999999999999999999999987754
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=124.10 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=89.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||+.++|+||+++||||+|||.+++++.|.+++++++..+ |
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 215 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP-S----------------------------------- 215 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5899999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+|++|.+.||..
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 3777899999988777899999999999999999999999999999998887754
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=121.60 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 204 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG------------------------------------P 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|+.++.....++++++..|.+.+..++.|+++++++++|+++|+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 47788999999888788999999999999999999999999999999987653
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=121.91 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=86.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~------------------------------------~ 206 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA------------------------------------P 206 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5899999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.......+..++.|...+..++.|+|+++++.+|++||+++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 37778899988776556788899999999999999999999999999998754
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=121.98 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=86.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++.+++.++|++++..+ +
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 205 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS------------------------------------P 205 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHH-HHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~-l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++. ++.|...+..++.|+|+++++.+|++||+++.
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 377788999988777788888 88899999999999999999999999998764
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-10 Score=128.89 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=117.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
++||+|||+|.||.+++..+...| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 579999999999999999999999 48999999998766532 223211 012233 34
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhcc-CccceecccccCCCC----------
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH---------- 290 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~~P~~---------- 290 (561)
+.++|+||+|+| +....++++++.+.++++++|++.+|.. .+..+.+.+. .+.||++.||+....
T Consensus 61 ~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 789999999999 4577889999998888888776544432 2556665543 357899999975222
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
....+.+++...++++..+.+.++++.+|..++.++
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567888888899999999999999999888886
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=122.53 Aligned_cols=97 Identities=23% Similarity=0.160 Sum_probs=86.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|+|||++++|+||+++||||+|||+ +++.+.+.++|++|+..+
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~------------------------------------ 218 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS------------------------------------ 218 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC------------------------------------
Confidence 5789999999999999999999995 889999999999999842
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
+.+...+|++++.....+++++++.|...+..++.|+|+++++.+|++||++..
T Consensus 219 p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 219 PLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 237778899999887788999999999999999999999999999999987754
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=121.93 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=87.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 210 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP------------------------------------P 210 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++.+..|.+.+..++.|+|+++++.+|++||++..
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 37778999999887788999999999999999999999999999999987654
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=121.57 Aligned_cols=97 Identities=23% Similarity=0.272 Sum_probs=85.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS------------------------------------P 201 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHH--HHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E--~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.| ...+..++.|+|+++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 3777889999988778899999998 4578889999999999999999887653
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=122.02 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=123.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHhh--hccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEKT--ISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~--~~~i~~~~~~~~ 223 (561)
+||+|||+|.||..+|..|+. ||+|++||+++++++... .|.. .+...+.. .+++.++++.+.
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~~g~l~~t~~~~~ 73 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELREARYLKFTSEIEK 73 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHhhCCeeEEeCHHH
Confidence 589999999999999999887 699999999999987643 2211 11011111 235666777777
Q ss_pred cCCCCEEEEeccCCh--------hhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHH-hhccC--ccceecccc---c
Q 008576 224 FKDVDMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIG-ERTYS--KDRIVGAHF---F 286 (561)
Q Consensus 224 l~~aDlVieav~e~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~-~~~~~--~~r~ig~h~---~ 286 (561)
+++||++|.|||... .......+.|.+.++++.+|+ ..||+++. ++. ..+.. ..++ +-.| +
T Consensus 74 ~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~-~~~~~~~~ 151 (425)
T PRK15182 74 IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV-YESTVYPGCTEEECVPILARMSGMTF-NQDFYVGY 151 (425)
T ss_pred HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE-EecCCCCcchHHHHHHHHHhccCCCc-CCCeeEee
Confidence 899999999998652 223333457888888888765 34444433 221 11111 0010 1111 1
Q ss_pred CCCCC---------CCeEEEEeCCCCcHHHHHHHHHHHHhcC-CceEEEcc-cccc---hhhhHHH----HHHHHHHHHH
Q 008576 287 SPAHV---------MPLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLV 348 (561)
Q Consensus 287 ~P~~~---------~~lveiv~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~ 348 (561)
+|... ..+--++.| .+++..+.+..+++.+. ..++++.+ ..+. ++++.+. +++||+..+.
T Consensus 152 ~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~la 229 (425)
T PRK15182 152 SPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIF 229 (425)
T ss_pred CCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 111225555 35778889999999875 33555554 2332 4565554 4579999888
Q ss_pred H-cCCCHHHHHHHHH
Q 008576 349 E-RGTDLYLIDRAIT 362 (561)
Q Consensus 349 ~-~G~~~~~ID~a~~ 362 (561)
+ .|+++.++-.++.
T Consensus 230 e~~GiD~~~v~~a~~ 244 (425)
T PRK15182 230 NRLNIDTEAVLRAAG 244 (425)
T ss_pred HHhCcCHHHHHHHhc
Confidence 6 5899999888875
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=123.23 Aligned_cols=186 Identities=16% Similarity=0.153 Sum_probs=124.1
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc----ccc
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ESF 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 224 (561)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+. ...|. .+....+. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999987764311 00010 01112222 234
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCCC-------CCe
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MPL 294 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~~-------~~l 294 (561)
..+|+||.|||... ...+++.++.+.+.++.||+..+++.+.+ ...+.+.. .|.||+. |+.. .+
T Consensus 62 ~~~dvIil~v~~~~-~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~----~gi~fvdapVsGG~~gA~~G~- 135 (467)
T TIGR00873 62 ERPRKIMLMVKAGA-PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA----KGILFVGSGVSGGEEGARKGP- 135 (467)
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh----cCCEEEcCCCCCCHHHHhcCC-
Confidence 67999999999754 44567788989898999887666555433 22222211 1455542 3322 22
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCce------EEEcc-cccc---hh-hhHHHHH---HHHHHHHHH--cCCCHHHHH
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP------IVVGN-CTGF---AV-NRMFFPY---TQAAFLLVE--RGTDLYLID 358 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~------v~v~d-~~G~---i~-nrl~~~~---~~ea~~l~~--~G~~~~~ID 358 (561)
.++.| .++++++.++++++.++..+ .++++ ..|. ++ |-+...+ +.|++.+.. .|++++++-
T Consensus 136 -~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~ 212 (467)
T TIGR00873 136 -SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIA 212 (467)
T ss_pred -cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444 47899999999999998763 56765 2343 34 4444433 579998873 688999998
Q ss_pred HHHH
Q 008576 359 RAIT 362 (561)
Q Consensus 359 ~a~~ 362 (561)
.++.
T Consensus 213 ~v~~ 216 (467)
T TIGR00873 213 EVFT 216 (467)
T ss_pred HHHH
Confidence 8885
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=115.70 Aligned_cols=151 Identities=17% Similarity=0.090 Sum_probs=110.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
-++|+|||.|.||.++|..|...|++|++++++.++..... .+.|. ...+..+.++.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G~-------------~~~s~~eaa~~ 73 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADGF-------------EVLTVAEAAKW 73 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCCC-------------eeCCHHHHHhc
Confidence 36899999999999999999999999999888754322210 11121 11222245789
Q ss_pred CCEEEEeccCChhhHHHHH-HHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC-------CCCeEE-E
Q 008576 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMPLLE-I 297 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~-------~~~lve-i 297 (561)
||+|+.++|... ...++ +++.+.++++++| +..+++++.......+...+++-.+|..|.+ .+..+. +
T Consensus 74 ADVVvLaVPd~~--~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l 150 (330)
T PRK05479 74 ADVIMILLPDEV--QAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL 150 (330)
T ss_pred CCEEEEcCCHHH--HHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence 999999999543 36777 7799999999988 7788888888765555556788899999987 322222 3
Q ss_pred E-eCCCCcHHHHHHHHHHHHhcCCceE
Q 008576 298 V-RTNQTSPQVIVDLLDIGKKIKKTPI 323 (561)
Q Consensus 298 v-~~~~t~~e~~~~~~~l~~~lGk~~v 323 (561)
+ .+...+.+..+.+..+++.+|.++.
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 3 3455668889999999999998865
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-11 Score=121.99 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=86.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|++||++++|+||+++||||+|||+ +++++.+.+++++++.. |
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~--~---------------------------------- 216 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAK--S---------------------------------- 216 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhC--C----------------------------------
Confidence 5789999999999999999999996 78999999999999884 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
+.+...+|+.++.....+++++++.|...+..++.|+|+++++.+|++||+++.
T Consensus 217 ~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 217 PLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 237778899999887778999999999999999999999999999999997653
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-10 Score=111.47 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=121.8
Q ss_pred EEEEEcCccchHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 149 KVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
||+|||+|.||.+|+..|.+.|+. |.++|+++++.+...+. . ......++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------~------------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------F------------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------c------------CCceEeCCHHHHH
Confidence 799999999999999999999864 58999998876543211 0 011222333 336
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
.+||+||.|++ ++...+++.++. ..++++|+|..+++++..+...+....+++..||+.|......+..+...
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 78999999998 455567777662 45778888888899999999888665678888888776544333443321
Q ss_pred HHHHHHHHHHHHhcCCceEEEcc--cccc-----hhhhHHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVGN--CTGF-----AVNRMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d--~~G~-----i~nrl~~~~~~ea~~l-~~~G~~~~~ID~a~~ 362 (561)
.+.++++++.+|..+.+..+ ..-+ .... +..++.++... ...|+++++...++.
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-YFGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 25788999999988775432 1111 1111 11244555544 456888888777664
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=121.60 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.++|++++....|
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p----------------------------------- 216 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP----------------------------------- 216 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCH-----------------------------------
Confidence 579999999999999999999999999999999999999873112
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....+++++++.|...+..++.++++++++.+|++||++..
T Consensus 217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 37778999999887888999999999999999999999999999999987654
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=120.87 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=87.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 205 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|+.++.+...+++++++.|.+.+..++.|+++++++++|+++|+++
T Consensus 206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 3677889999988888899999999999999999999999999999998765
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-10 Score=110.11 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=112.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
.+||+|||+|.||.+++..++++|+ + |+++++ ++++++...+. .+ +..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 4689999999999999999998873 3 777887 45655442210 01 1223344
Q ss_pred -cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeE-EEEe
Q 008576 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL-EIVR 299 (561)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lv-eiv~ 299 (561)
+.+.++|+||.|+| +...+++++++.+.++ +.+|+|.+.+++++.+...++...+++..||+.|......+ -++.
T Consensus 61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 34688999999999 4456788888887665 56888999999999999888765678889998776543332 2345
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
....+++..+.+++++..+|..+.+
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 5667899999999999999988864
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-11 Score=133.39 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=89.7
Q ss_pred cccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCCC
Q 008576 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (561)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (561)
++||++|+|+||+++||||+|||++++++++.++|++++..+ +.
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------p~ 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS------------------------------------PD 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC------------------------------------HH
Confidence 589999999999999999999999999999999999999842 24
Q ss_pred cHHHHHHHHHHhhcCChHHH-HHHHHHHHhHHhcCHHHHH---HHHHHHhhccCCCC
Q 008576 82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSKV 134 (561)
Q Consensus 82 A~~~~~~~v~~~~~~~~~~~-l~~E~~~~~~l~~s~~~~~---~~~aF~~kr~~~k~ 134 (561)
|+..+|++++.+...+++++ +..|.+.|..+++|+|+++ ++++|++||+++..
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~ 546 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD 546 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence 88889999999999999999 9999999999999999999 99999999998653
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-11 Score=132.88 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=89.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++|+|+||++|||||+|||++++++++.++|++|+..+ |
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 484 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-P----------------------------------- 484 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHH-HHHHHHHHhHHhcCHHHHH---HHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~-l~~E~~~~~~l~~s~~~~~---~~~aF~~kr~~~k 133 (561)
.|+..+|++++.+...+++++ +..|.+.|..++.|+|+++ ++.+|++||+|+.
T Consensus 485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f 541 (546)
T TIGR03222 485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQF 541 (546)
T ss_pred HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCC
Confidence 478889999999988999999 9999999999999999999 9999999999865
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-11 Score=119.84 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=85.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA------------------------------------P 201 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHH----HHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEA----EDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~----~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++++..|. ..+..++.|+|+++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 37778899998887788999988886 478889999999999999999987654
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-11 Score=118.75 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=110.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
++||+|||+|.||+++|..|+++||+|++|.++++.+++.... +++...-++ -.....+.+++|++ .++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~--------~~N~~yLp~--i~lp~~l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET--------RENPKYLPG--ILLPPNLKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc--------CcCccccCC--ccCCcccccccCHHHHHh
Confidence 3699999999999999999999999999999999988763321 111111110 01234677788885 477
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC------HHHHHhhccCccceecccccCCCC-------CC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID------LNLIGERTYSKDRIVGAHFFSPAH-------VM 292 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~------~~~l~~~~~~~~r~ig~h~~~P~~-------~~ 292 (561)
+||+|+.+|| .+..+++++++...+++++++++.+.++- ++++.+..-....+. ....|+ ..
T Consensus 71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~---vLSGPs~A~EVa~g~ 145 (329)
T COG0240 71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIA---VLSGPSFAKEVAQGL 145 (329)
T ss_pred cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEE---EEECccHHHHHhcCC
Confidence 8999999999 67889999999888999999888776653 344443321111111 122222 23
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
|...++.+ .+++..+.++.++..--.+++...|..|
T Consensus 146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 33334444 4777778888877764444555455443
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-11 Score=119.21 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=87.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++++|+||+++||||+|+|++++++.|.++|++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 203 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP-A----------------------------------- 203 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++++..|.+.+..++.++++++++++|+++|+++.
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 36667889998888888999999999999999999999999999999887653
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-11 Score=119.86 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=86.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|| ++++.+.+.+++++++.. | +
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~--~----------------------------------~ 204 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQK--P----------------------------------L 204 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhC--C----------------------------------H
Confidence 57899999999999999999999 788999999999999884 2 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+|+.
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 37778899998887788999999999999999999999999999999998754
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-10 Score=116.06 Aligned_cols=202 Identities=14% Similarity=0.065 Sum_probs=133.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||+|.||.++|..|...|++|+++++. .+..+.+. +.|. ...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~Gv-------------~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDGF-------------KVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCCC-------------EECCHHHHHhc
Confidence 58999999999999999999999998876554 33333211 1221 12222245789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCC-------CCeE-EEE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLL-EIV 298 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-------~~lv-eiv 298 (561)
||+||.++|+.. ....+.+++.+.++++. ++|...+++++.+...++...+++...|+.|.+. +..+ -++
T Consensus 60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 999999999542 35566777888888776 5678889999988877765568999999999973 4444 454
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCc-------eE--EEc-ccccc--hhhhHHHHHH---HHHHHHHHcCCCHHHHHHHHH
Q 008576 299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPYT---QAAFLLVERGTDLYLIDRAIT 362 (561)
Q Consensus 299 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d~~G~--i~nrl~~~~~---~ea~~l~~~G~~~~~ID~a~~ 362 (561)
.+...+.+..+.+..++..+|.. .. .+. |--+. .+.-...+++ .|++ ++.|++++.--....
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 66677888999999999999988 21 111 11111 1122222332 2443 788888877555443
Q ss_pred -hcCCCccHHHHHHHhchH
Q 008576 363 -KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 363 -~~G~~~GPf~~~D~~Gld 380 (561)
.+ .|--+++-..|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 21 3555555555553
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=109.12 Aligned_cols=199 Identities=17% Similarity=0.204 Sum_probs=132.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH---H-----HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR---V-----RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~---i-----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
.+|+|||+|.+|.++|..++++|++|+.+|+|+.+++..... | ...+...++ .++++.++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence 799999999999999999999999999999999988764321 1 111222222 25678899
Q ss_pred cccccCCCCEEEEeccC--------ChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhc-------cCccceec
Q 008576 220 DYESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERT-------YSKDRIVG 282 (561)
Q Consensus 220 ~~~~l~~aDlVieav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~-------~~~~r~ig 282 (561)
+.+.++.||++|.|||. |+.......+.|.+.+.++.+++.-+++.| .+++..-+ ..+..|--
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999974 455677778889999999998775444444 22333221 11212111
Q ss_pred ccccCCCCCC---CeEE------EEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-ccc---hh----hhHHHHHHHHHH
Q 008576 283 AHFFSPAHVM---PLLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AV----NRMFFPYTQAAF 345 (561)
Q Consensus 283 ~h~~~P~~~~---~lve------iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~----nrl~~~~~~ea~ 345 (561)
. ++|-..+ .+.| |+.| .+++..+.+..+++.+-+..+.+.+. ... +. ..+-.++.||-.
T Consensus 158 a--ysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 A--YSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred e--eCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1 1333221 1222 5555 57889999999999976666666542 221 22 233346788877
Q ss_pred HHHH-cCCCHHHHHHHHH
Q 008576 346 LLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 346 ~l~~-~G~~~~~ID~a~~ 362 (561)
.+.+ .|++..++-.+..
T Consensus 234 li~~~~GIdvwevIeaAn 251 (436)
T COG0677 234 LICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHHHhCCcHHHHHHHhc
Confidence 7665 6898877666664
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-11 Score=119.55 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=84.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 207 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS------------------------------------P 207 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHH-HHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~-E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++++.. +.+.+..++.|+++++++.+|++||+++.
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~ 261 (265)
T PRK05674 208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAW 261 (265)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCC
Confidence 377788999998888888888765 45677888999999999999999987653
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-11 Score=122.26 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHH-HHHHHHHHHHHhCC---CC
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKY-IYSRLEEWSSLYGE---FF 533 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~-~~~~~~~~~~~~~~---~~ 533 (561)
.+.||.||++.+++|||++++++|++ +++|||.+++.|+|+|+..-|||+++|.+|+|. +.+.++++...+.. .+
T Consensus 186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~ 264 (321)
T PRK07066 186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKL 264 (321)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhc
Confidence 34699999999999999999999999 899999999999999955569999999999997 45555555443321 13
Q ss_pred CccHHHHHHHH------cCCCcccCCcccccc
Q 008576 534 KPCAFLAERAG------KGATLVRNLKLFFSY 559 (561)
Q Consensus 534 ~p~~~l~~~~~------~g~~g~~~g~Gfy~y 559 (561)
.+++++.++++ .+..+.++..++|.|
T Consensus 265 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (321)
T PRK07066 265 VAPELTDALIDRVVEGTAEQQGPRSIKALERY 296 (321)
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 33345555555 578888999999887
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-10 Score=112.19 Aligned_cols=199 Identities=18% Similarity=0.294 Sum_probs=127.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (561)
+||+|||+|..|...+.+|+..||+|+.+|+++++++...+.+ +..++.+++++..+ +|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 5899999999999999999999999999999999988765432 22444444443221 4689999996
Q ss_pred ccCCCCEEEEeccC--------ChhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhcc--Cccceecccc---c
Q 008576 223 SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHF---F 286 (561)
Q Consensus 223 ~l~~aDlVieav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~--~~~r~ig~h~---~ 286 (561)
+++++|++|.||+. |......+.+++.++++..++|+ +-|+.|+. ++.+.+. .+.+ +| +
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~----~f~v~~ 147 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGK----DFEVAS 147 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccC----CceEec
Confidence 58999999999965 44467778888999888766553 56777754 3333221 1111 22 2
Q ss_pred CCCCC----------CCeEEEEeCCCCcHHHHHHHHHHHHhc--CCceEEEccc-cc----chhhhHHH---HHHHHHHH
Q 008576 287 SPAHV----------MPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNC-TG----FAVNRMFF---PYTQAAFL 346 (561)
Q Consensus 287 ~P~~~----------~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~-~G----~i~nrl~~---~~~~ea~~ 346 (561)
||-.+ .|--.|+... +..+.+.+.+++..+ ...|+++.+. .. +..|-.++ .++||...
T Consensus 148 NPEFLREG~Av~D~~~PdRIViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ 225 (414)
T COG1004 148 NPEFLREGSAVYDFLYPDRIVIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIAN 225 (414)
T ss_pred ChHHhcCcchhhhccCCCeEEEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33211 1111244332 222455555555543 4566665542 22 23455444 46889888
Q ss_pred HHHc-CCCHHHHHHHH
Q 008576 347 LVER-GTDLYLIDRAI 361 (561)
Q Consensus 347 l~~~-G~~~~~ID~a~ 361 (561)
+.+. |++..+|-..+
T Consensus 226 ice~~g~D~~~V~~gI 241 (414)
T COG1004 226 ICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHhCCCHHHHHHHc
Confidence 8874 78888887765
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-11 Score=117.69 Aligned_cols=93 Identities=23% Similarity=0.173 Sum_probs=83.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++++|+||+++||||+|||++++++.|.++|+++++.+ +
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 200 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP------------------------------------Q 200 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.+...+|++++.....++++++..|...+..++. +|+++++.+|++|+.
T Consensus 201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 3777889999887777899999999988888777 999999999998765
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-11 Score=117.72 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=85.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 205 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS------------------------------------S 205 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.+...+|+.++.....++++.+..|...+..++.|+++++++++|++||+
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 37778999999888888999999999999999999999999999999874
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-11 Score=119.07 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=81.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++.+++.++|++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 204 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS------------------------------------P 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++..... ....+..|...+..++.|+|+++++.+|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 205 MAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 3777888888876443 345556677889999999999999999999988764
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.2e-11 Score=118.53 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=82.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++|+..+ +
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 214 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS------------------------------------P 214 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|+.++.... ..+...+.|.+.+..++.|+|+++++.+|++||+++..
T Consensus 215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 367788888877643 34555567888889999999999999999999987653
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.2e-11 Score=117.91 Aligned_cols=97 Identities=23% Similarity=0.179 Sum_probs=81.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.++|++|+..+ +
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 217 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS------------------------------------R 217 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcC-ChHHHHHHHHHHHh-HHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~-~~~~~l~~E~~~~~-~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++..... ++++.+..|..... .++.|+|+++++.+|++||+++.
T Consensus 218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 3777889999877654 68888887875432 35789999999999999987654
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-11 Score=117.22 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=83.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 203 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhc-CCh-HHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~-~~~-~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.... .+. +..++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 367788998886543 333 57788899999999999999999999999988764
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.7e-11 Score=117.57 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=82.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||+++|++.+.+++++|+..+ +
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 211 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN------------------------------------P 211 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHH--HHhHHhcCH-HHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~--~~~~l~~s~-~~~~~~~aF~~kr~ 130 (561)
.+...+|++++.....+++++++.|.. .+..++.++ |+++++++|++||.
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 477889999999888889999888764 355678898 89999999999987
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.7e-11 Score=120.60 Aligned_cols=126 Identities=21% Similarity=0.400 Sum_probs=95.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.+||+|||+|.||.++|..++..|+ +|+++|++++.++. +.++...... ......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~------~~ld~~~~~~------~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG------KALDISHSNV------IAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH------HHHHHHhhhh------ccCCCeEEEECCCHHHhC
Confidence 4699999999999999999999996 99999999987532 1122222110 111123567678889999
Q ss_pred CCCEEEEec-------------------cCChhhHHHHHHHHHhhcCCC-ceeeecCCCCCHHHHHhhccCc-cceeccc
Q 008576 226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (561)
Q Consensus 226 ~aDlVieav-------------------~e~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h 284 (561)
+||+||+++ .++..+++++++++.+++++. .|++||++.+....++.....| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 557778999999999999764 4667999888887777766654 8888875
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-11 Score=108.79 Aligned_cols=105 Identities=23% Similarity=0.282 Sum_probs=76.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKDV 227 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~a 227 (561)
||+|||+|.||.++|..|+.+|++|++|.++++.++...+ ........++ ......+..++|++ .++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~--------~~~n~~~~~~--~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINE--------TRQNPKYLPG--IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHH--------HTSETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH--------hCCCCCCCCC--cccCcccccccCHHHHhCcc
Confidence 7999999999999999999999999999999977765332 1111111111 11223566788884 58999
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
|+||.+|| ....+++++++.++++++++|++.+.++
T Consensus 71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999 5567899999999999999888887776
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.2e-11 Score=119.57 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=80.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|+||+++||||+|||++++++++.++|++|+..+ +
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 268 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS------------------------------------P 268 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++..... .......|...+..++.|+|+++++.+|++||+++..
T Consensus 269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 3777889988876543 3333344557888899999999999999999987753
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=104.49 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=107.2
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+||| +|.||.+++..|+++|++|+++++++++++........ .....+. . ..+..+++.+.+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g~-~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGGS-D--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccCC-C--------ceEEEeChHHHHhc
Confidence 4799997 89999999999999999999999999887653321110 0000110 0 01122233456789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-----------------HHHHhhccCccceecccccCCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA 289 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-----------------~~l~~~~~~~~r~ig~h~~~P~ 289 (561)
+|+||.|+| .....++++++.+.+.. ++|++.+.++.. ..+++.++...+++....+.|.
T Consensus 69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998 45566777787766654 777777666654 3455555433677776554332
Q ss_pred CC-------CCeEEEEeCCCCcHHHHHHHHHHHHhc-CCceEEEcc
Q 008576 290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (561)
Q Consensus 290 ~~-------~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d 327 (561)
.. .+....+.|+ +++..+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 21 1222345553 566888899999999 999988764
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-10 Score=115.81 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=97.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
.+||+|||+|.||.+||..|+++|++|++|+++++..+..... ...+..-+. .....++..++++ +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~--------~~~~~~~~g--~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAE--------RENREYLPG--VALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh--------CcccccCCC--CcCCCCeEEeCCHHHHHc
Confidence 4589999999999999999999999999999998876653311 001100000 0011123344555 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-----HHHHHhhccC----ccceecccccCCCC---CCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS----KDRIVGAHFFSPAH---VMP 293 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-----~~~l~~~~~~----~~r~ig~h~~~P~~---~~~ 293 (561)
+||+||+|+|+. . .++++ +.+++++++++.+.++. ...+++.+.. ...+++ -|..+.. ..+
T Consensus 74 ~aD~Vi~~v~~~-~-~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~ 146 (328)
T PRK14618 74 GADFAVVAVPSK-A-LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLP 146 (328)
T ss_pred CCCEEEEECchH-H-HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCC
Confidence 999999999965 2 23444 44567777766655544 3344444321 111111 1111111 112
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 328 (561)
.+.++.+ .+++.++.+++++...|..++...|.
T Consensus 147 ~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di 179 (328)
T PRK14618 147 AATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDR 179 (328)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3344444 47888999999999999877754443
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=115.42 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=78.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++++.+++++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------~ 201 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS------------------------------------P 201 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++......... ...|...+..++.|+|+++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 253 (256)
T TIGR03210 202 TAIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEF 253 (256)
T ss_pred HHHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCC
Confidence 37778888888764432111 12355678889999999999999999987754
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.5e-10 Score=109.43 Aligned_cols=141 Identities=19% Similarity=0.228 Sum_probs=103.7
Q ss_pred HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccCChh
Q 008576 162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (561)
Q Consensus 162 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~~~ 239 (561)
||..|.++| ++|+.+|++++.++.+. +.|.++.. .++.+.+.+||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~~-----------~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDEA-----------STDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSEE-----------ESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeeec-----------cCCHhHhcCCCEEEEcCC--HH
Confidence 678888998 68999999999887654 45554321 222466899999999999 77
Q ss_pred hHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCC------------CCCeEEEEeCCCCcH
Q 008576 240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP 305 (561)
Q Consensus 240 ~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lveiv~~~~t~~ 305 (561)
...++++++.++++++++|+..+|.. ++..+.+..+...+|+|.||+..+. ....+.++++..+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 78899999999999999998877764 3456666666578999999987551 256788999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEc
Q 008576 306 QVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.++.+..+++.+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999888875
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.8e-10 Score=122.56 Aligned_cols=154 Identities=13% Similarity=0.102 Sum_probs=108.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (561)
..+||+|||+|.||.++|..|...|++|++||++... +.+. +.|. ...++.++ +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~Gv-------------~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLGV-------------SYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcCC-------------eEeCCHHHHH
Confidence 3468999999999999999999999999999998642 2211 1221 12233333 3
Q ss_pred C-CCCEEEEeccCChhhHHHHHHHHHh-hcCCCceeeecCCC--CCHHHHHhhccCccceecccccCCCCCCC-------
Q 008576 225 K-DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMP------- 293 (561)
Q Consensus 225 ~-~aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~~~~------- 293 (561)
. .||+||.|+| ......++.++.. .+++++||++.+|+ .++..+...++...+|++.||+.++....
T Consensus 423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 5899999999 4566677777765 57789999887776 45566666665556799999998766431
Q ss_pred -eE--EEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 294 -LL--EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 294 -lv--eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
++ .++.++....+.++.+.+++..+|..++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 11 1223344455667777899999999888886
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=117.42 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=82.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.++|++|+..+ +
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 243 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS------------------------------------P 243 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++..... ..+....|.+.+..++.++++++++.+|++||+++.
T Consensus 244 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 244 TAMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 3777888988776543 344455688999999999999999999999998765
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.1e-10 Score=109.80 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=110.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+||+|||+|+||++|+..|.++|. +|+++|++++.. +. ....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~------------~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF------------VYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce------------EEeCChHHH
Confidence 489999999999999999999873 499999887531 00 001112233
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCe-EEEEeCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTNQ 302 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~l-veiv~~~~ 302 (561)
+.+||+||.|++ +....+++.++.++++++ +|+|..+++.++.+...++...+++...|+.|...... ..++++..
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999997 677889999998877654 56788889999999887765556778888888766544 44556777
Q ss_pred CcHHHHHHHHHHHHhcCCceEE
Q 008576 303 TSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
.+++..+.+..+++.+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8889999999999999976655
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=114.37 Aligned_cols=93 Identities=23% Similarity=0.217 Sum_probs=78.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++++..+ +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~------------------------------------~ 210 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA------------------------------------P 210 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++..... .+..+.+.+..++.++++++++.+|++||+++.
T Consensus 211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 3677788888776443 345566788889999999999999999987653
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-10 Score=117.00 Aligned_cols=122 Identities=22% Similarity=0.380 Sum_probs=89.4
Q ss_pred EEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
|+|||+|.||.++|..++..|+ +|+++|++++.++ +.. ++.... ........++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~-----~dl~~~------~~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKA-----LDISQA------APILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHH-----HHHHHh------hhhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999977543 221 111100 00111123566667788899999
Q ss_pred EEEEec--------------cCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHHHhhccC-ccceecc
Q 008576 229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (561)
Q Consensus 229 lVieav--------------~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (561)
+||+++ +++..+++++++++.++++++. |++||.+.+....++..... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999976 6788899999999999998777 46688887777676665554 5677775
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-10 Score=113.69 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=92.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||..|+.+||+|++||+++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 58999999999999999999999999999998530 11 23568
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhh-cCCCceeeecCCCCCHH------HHHh-hccCccceecccccCCCC------CC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLN------LIGE-RTYSKDRIVGAHFFSPAH------VM 292 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~------~l~~-~~~~~~r~ig~h~~~P~~------~~ 292 (561)
+|+||.|+|. ...+.+++++.++ ++++++|++.++++.+. ++.. .... .+++. +..|.. ..
T Consensus 48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~ 122 (308)
T PRK14619 48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGL 122 (308)
T ss_pred CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCC
Confidence 9999999996 3677788888764 67788888766644432 2211 1111 11210 012211 11
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
+...++.+ .+.+..+.+++++...+..++..+|.-|
T Consensus 123 ~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 123 PAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 22333333 3688899999999999888876665333
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-10 Score=114.03 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=82.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.+++++++....|
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~----------------------------------- 221 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSP----------------------------------- 221 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 579999999999999999999999999999999999999873112
Q ss_pred CcHHHHHHHHHHhhcCC-hHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSG-PRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~-~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.++..+|++++...... ..+....|...+..++.|+++++++.+|++||++...+
T Consensus 222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~ 277 (296)
T PRK08260 222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG 277 (296)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence 37778899998764322 22344668888999999999999999999999877643
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-10 Score=112.30 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=80.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++++.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 204 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP------------------------------------P 204 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~k 128 (561)
.+...+|++++... .++.+.+..|.+.+..++.++++++++++|+++
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 36777888887654 468888999999999999999999999999874
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-10 Score=115.00 Aligned_cols=125 Identities=22% Similarity=0.371 Sum_probs=92.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||.++|..++..| .+|+++|++++.++. .. ++...... ......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g-~~-----lDl~~~~~------~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQG-KA-----LDLKHFST------LVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchh-HH-----HHHhhhcc------ccCCCeEEEeCCCHHHhCC
Confidence 49999999999999999999999 699999999877542 21 11111100 0011125555678889999
Q ss_pred CCEEEEec--cCCh------------hhHHHHHHHHHhhcCCC-ceeeecCCCCCHHHHHhhccCc-cceeccc
Q 008576 227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (561)
Q Consensus 227 aDlVieav--~e~~------------~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h 284 (561)
||+||+++ |+++ .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 6666 78999999999998777 4667888877766666655555 7888765
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=111.47 Aligned_cols=166 Identities=12% Similarity=0.105 Sum_probs=104.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-C---HHHHHhhhcccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-T---QEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~---~~~~~~~~~~i~~~~~~~ 222 (561)
++||+|||+|.||..+|..|+++|++|+++|+++. .+... +.|.. . .........++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999653 22211 11210 0 000000112344455666
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhccCccceecccccC-----CCCC--CCe
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFS-----PAHV--MPL 294 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~~~-----P~~~--~~l 294 (561)
.+.++|+||+|++.. ...++++++.+.++++++|++.++++.. ..+...++....+.|.+++. |... ...
T Consensus 70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 688999999999853 4567889999999999988887777764 45666554333334444432 2110 000
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccc
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (561)
-.+.-+. .+.++.+.++++..|......+|..
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~ 179 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMR 179 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhH
Confidence 0111121 2446788889998888777777643
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-10 Score=111.90 Aligned_cols=95 Identities=22% Similarity=0.220 Sum_probs=83.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+||+ ++.+.+.+++++++..+ +
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~------------------------------------~ 207 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS------------------------------------P 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999995 47889999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++++..|.+.+..++.++|+++++.+|++||++..
T Consensus 208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 37778899999888888999999999999999999999999999999987653
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-10 Score=110.43 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=82.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||.+ +++++.|.++|++++..+ |
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~-~----------------------------------- 192 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGP-F----------------------------------- 192 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999964 467889999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 245 (248)
T PRK06072 193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF 245 (248)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence 37778899999887788999999999999999999999999999999988754
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-10 Score=109.75 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=78.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHH-HHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~-a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|+|||++++|+||+++||||+|+|+. .+.+.++ +++++..+
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~--~~~a~~~~a~~la~~~------------------------------------ 193 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDP--ENAALAWFDEHPAKLS------------------------------------ 193 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcH--HHHHHHHHHHHHHhCC------------------------------------
Confidence 57999999999999999999999753 3566676 67888742
Q ss_pred CCcHHHHHHHHHHhhcCChHHHH-HHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l-~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
+.++..+|++++.....++++++ ..|.+.+..++.|+|+++++++|++||++..
T Consensus 194 p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 194 ASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 24777889999888777888776 4788889999999999999999999998754
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.3e-09 Score=115.83 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=105.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c-
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 224 (561)
.++|+|||+|.||.++|..|.+.|++|+++|++... +.+. +.| +...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence 358999999999999999999999999999998543 2111 112 112233333 3
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHH-hhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCCC-----CCeEE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV-----MPLLE 296 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~-~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~-----~~lve 296 (561)
.+||+||.|+| .....+++.++. +.++++++|++.+|.. ++..+...++....|+++||+..+.. .....
T Consensus 107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 56999999999 456677888875 5678899888766544 23445555554457999999865541 11112
Q ss_pred EEe-----CCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 297 IVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 297 iv~-----~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222334567788899999999999886
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-10 Score=111.99 Aligned_cols=90 Identities=14% Similarity=0.035 Sum_probs=81.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|| +++++++.++|++++..+ +
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~------------------------------------~ 200 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP------------------------------------R 200 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 57899999999999999999999 679999999999999842 2
Q ss_pred CcHHHHHHHHHHhhc-CChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~-~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~k 128 (561)
.+...+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus 201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 477889999998877 789999999999999999999999999999874
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.4e-10 Score=114.02 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=84.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... .. ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~---~~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA---AP---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh---hh---------hcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 9999999988754321111111 00 011123566667888899
Q ss_pred CCCEEEEec--------------cCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHHHhhccC-ccceecc
Q 008576 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (561)
Q Consensus 226 ~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (561)
+||+||+++ .++..+++++++++.+.+++.. |++||.+.+-...+...... +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 3566889999999999986653 44466554443333333222 3556654
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-10 Score=112.14 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=84.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|+|++++.+.+.+++++++..+ |
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 197 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP-P----------------------------------- 197 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999852 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~k 128 (561)
.+...+|+.++........+.+..|.+.+..++.++|+++++++|++|
T Consensus 198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 367788999999888889999999999999999999999999999987
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-10 Score=111.28 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=74.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 213 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS-Q----------------------------------- 213 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhc---CChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~---~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.... .+++..+..|. .++.|+++++++.+|++||+++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 214 TAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence 366778888876422 23444444443 46789999999999999988764
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.7e-10 Score=109.59 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=79.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|+||+++||||+|||+++. .+.+++++++..+ +
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~------------------------------------p 200 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN------------------------------------K 200 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999986553 5777888888742 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.. ..+++++++.|.+.+..++.|+|+++++.+|++||++..
T Consensus 201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 4777888888865 446888999999999999999999999999999987643
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=107.48 Aligned_cols=203 Identities=15% Similarity=0.204 Sum_probs=125.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh----h-ccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT----I-SLLTGVL 219 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~----~-~~i~~~~ 219 (561)
++||+|||+|.+|..+|..|+.+| ++|+++|+++++++...+... .+.+...++. . .++.+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~----------~~~e~gl~ell~~~~~~~l~~t~ 70 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL----------PIYEPGLDEVVKQCRGKNLFFST 70 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC----------ccCCCCHHHHHHHhhcCCEEEEc
Confidence 468999999999999999999885 789999999999877442210 0111111221 1 2477888
Q ss_pred ccc-ccCCCCEEEEeccC-------------ChhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceec
Q 008576 220 DYE-SFKDVDMVIEAIIE-------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG 282 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~e-------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig 282 (561)
+++ .+++||++|.|||. |......+.++|.++++++++|+ ..|+.|+. .+...+....+ |
T Consensus 71 ~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~--g 147 (473)
T PLN02353 71 DVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--G 147 (473)
T ss_pred CHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCC--C
Confidence 875 58999999999963 23366778888999999888765 34444433 33222211000 1
Q ss_pred ccc---cCCCCCC---------CeEEE-EeCC--CCcHHHHHHHHHHHHhcCC-ceEEEcc-c---ccchhhhHH----H
Q 008576 283 AHF---FSPAHVM---------PLLEI-VRTN--QTSPQVIVDLLDIGKKIKK-TPIVVGN-C---TGFAVNRMF----F 338 (561)
Q Consensus 283 ~h~---~~P~~~~---------~lvei-v~~~--~t~~e~~~~~~~l~~~lGk-~~v~v~d-~---~G~i~nrl~----~ 338 (561)
..| ++|-... ..--| +.+. .+.++..+.+..++..+-+ .++.+.+ . -..++.+.+ .
T Consensus 148 ~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~I 227 (473)
T PLN02353 148 INFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRI 227 (473)
T ss_pred CCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHH
Confidence 111 2332211 11113 3443 2225678888888888742 4454443 1 122333332 3
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 339 PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 339 ~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
+++||-..+.+ .|+++.+|-.++.
T Consensus 228 af~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 228 SSVNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 66889888876 5899999998886
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.8e-10 Score=109.23 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=83.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++++|+||+++||||+|++ ++.+.+.+++++++..+ +
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~------------------------------------~ 205 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS------------------------------------P 205 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999974 58999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|+.++.....++++.++.|...+..++.++++++++.+|++||+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~ 257 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 4778899999998888899999999999999999999999999999998764
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=93.92 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=103.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
|++++|+|+|.||.++|..|+++||+|++-.++.+. ++.+.+. ....++..+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---------------------l~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---------------------LGPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---------------------hccccccCChHHHHh
Confidence 579999999999999999999999999999665544 3332211 112345555667789
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC----------------CHHH-HHhhccCccceecc-ccc-
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLNL-IGERTYSKDRIVGA-HFF- 286 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~----------------~~~~-l~~~~~~~~r~ig~-h~~- 286 (561)
.||+||.+|| ......+++++..... +.|+++.|-.+ +.++ +++.++.. +++.. |-.
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 6667788888887766 77777554431 1222 33444443 44432 111
Q ss_pred -----CCCCC-CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 287 -----SPAHV-MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 287 -----~P~~~-~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
+-++. ......+++ -+.+..+.+..+.+.+|..++.++.
T Consensus 136 a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 11111 344445565 3778899999999999999998864
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.6e-08 Score=95.75 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=95.8
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc-ccccCCCCEEEEeccCC
Q 008576 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIEAIIEN 237 (561)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~l~~aDlVieav~e~ 237 (561)
|.+||.+|+++||+|++||+++++++... .+.+.+.|. ...++ .+.+++||+||.|+|..
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA-------------~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGV-------------KVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCC-------------eecCCHHHHHhCCCEEEEecCCH
Confidence 88999999999999999999987654211 111223332 12233 35678999999999955
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhcc-------CccceecccccC-CCCCCCeEEEE------eCCCC
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-------SKDRIVGAHFFS-PAHVMPLLEIV------RTNQT 303 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-------~~~r~ig~h~~~-P~~~~~lveiv------~~~~t 303 (561)
. ..++++..+.+.++++++|+ ++||+++..+...+. ..-.+..+||-. |-....-.-++ .-...
T Consensus 93 a-aV~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 K-GTFSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred H-HHHHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 4 44556677888889998775 567777665544332 123344555542 11111111122 22345
Q ss_pred cHHHHHHHHHHHHhcCCceEEEc
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+++.+++..++.+..|+.++++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 88999999999999999999885
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.6e-10 Score=114.92 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=84.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHH------------HhhccCCCchhh------hcccCCCCCchhH
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL------------DILEHRRPWVAT------LYKTDKIEPLGEA 62 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~------------~la~~~~p~~~~------~~~~~~~~~~~~~ 62 (561)
|+|||++++|++|+++||||+|||++++.+...++++ .+.....+.... ...-+-+... ..
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 241 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD-TV 241 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC-CH
Confidence 5799999999999999999999999888765333221 011100000000 0000000000 00
Q ss_pred HHHHH--------HHHHHHHhh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH-hh-ccC
Q 008576 63 REIFK--------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ-RGT 131 (561)
Q Consensus 63 ~~~~~--------~a~~~~~~~-~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~-~k-r~~ 131 (561)
..++. .+.+.+++- .+++.++..+|++++.+...+++++++.|...+..++.|+|+++++++|+ +| |+|
T Consensus 242 ~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 242 EDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 11111 122333332 24677999999999998888999999999999999999999999999997 65 555
Q ss_pred CC
Q 008576 132 SK 133 (561)
Q Consensus 132 ~k 133 (561)
+.
T Consensus 322 ~~ 323 (342)
T PRK05617 322 KW 323 (342)
T ss_pred CC
Confidence 43
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=107.14 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=78.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|++ + +.+.+++++++..+ +
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~------------------------------------~ 189 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLA------------------------------------P 189 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCC------------------------------------H
Confidence 579999999999999999999975 3 37899999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.. .+++++++.|.+.+..++.|+|+++++.+|++||++..
T Consensus 190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 3777888988765 56899999999999999999999999999999987654
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=105.70 Aligned_cols=175 Identities=13% Similarity=0.125 Sum_probs=108.7
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-c
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (561)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+. .......+.. .....++..+++++ .
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~--------~~~~~~l~~~-~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDN--------HRNSRYLGND-VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhc--------CCCcccCCCC-cccCCCeEEECCHHHH
Confidence 34679999999999999999999999 799999999876653311 0000000000 01112455566664 5
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH------H-HHHhhccCccceecccccCCCC---CCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------N-LIGERTYSKDRIVGAHFFSPAH---VMP 293 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~------~-~l~~~~~~~~r~ig~h~~~P~~---~~~ 293 (561)
+.++|+||.||| ....+++++++.+.++++++++|.+.++.. + .+.+.++.....+-..|..+.. ..+
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~ 152 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYA 152 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCC
Confidence 789999999998 667888999999999888877776666654 2 3444343211111111211111 122
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchh
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV 333 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~ 333 (561)
...++.+ .+++..+.+..++..-+..+....|.-|-..
T Consensus 153 t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~ 190 (341)
T PRK12439 153 AAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGVEM 190 (341)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHHHH
Confidence 2223333 2677788888888877766666667555433
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=100.59 Aligned_cols=108 Identities=23% Similarity=0.312 Sum_probs=72.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHH----HHhh--hccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEK----FEKT--ISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~----~~~~--~~~i~~~~ 219 (561)
|||+|||+|.+|..+|..|+.+||+|+.+|+|++.++...+ |.. .+.. +.+. -+++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~------------g~~p~~E~~l~~ll~~~~~~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN------------GELPIYEPGLDELLKENVSAGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT------------TSSSS-CTTHHHHHHHHHHTTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh------------ccccccccchhhhhccccccccchhhh
Confidence 59999999999999999999999999999999998876442 211 1111 1111 24677888
Q ss_pred cccc-cCCCCEEEEeccC--------ChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 220 DYES-FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 220 ~~~~-l~~aDlVieav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
+.+. +.+||++|.|||. |.....++.++|.+.+.++.+|+ .-|++++.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppG 125 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPG 125 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTT
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEe
Confidence 8765 8999999999964 34567788889999999988775 45555544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-09 Score=89.63 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=68.0
Q ss_pred EEEEEcCccchHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
||+|||+|.||.+|+..|..+| ++|.++ +++++++++..++ .+ ..+...+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 899966 9999988764321 11 011111334567
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+++|+||.||| +....++++++ ....++.+++|.+.
T Consensus 60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 89999999998 66778899999 66778888887654
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-09 Score=104.89 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=80.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|+++++.+ +
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP------------------------------------R 201 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF 125 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF 125 (561)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++...
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 377789999998888899999999999999999999999998864
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=105.14 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=118.7
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc----cCCCCEEEEe
Q 008576 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 233 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----l~~aDlViea 233 (561)
||..||..|+++|++|++|||++++.+...+. .+. . ..+....++++ +..+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988764320 110 0 01223344433 3458999999
Q ss_pred ccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCCC-------CCeEEEEeCCCC
Q 008576 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MPLLEIVRTNQT 303 (561)
Q Consensus 234 v~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~~-------~~lveiv~~~~t 303 (561)
||....+ .+++..+.+.+.++.||+..+++.+-+ +.++.+.. .|+||+. |+.. ++ .++.| .
T Consensus 62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~G--G 132 (459)
T PRK09287 62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPG--G 132 (459)
T ss_pred CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEe--C
Confidence 9977554 556688888888888887654443332 33333321 2666653 4432 33 34544 3
Q ss_pred cHHHHHHHHHHHHhcCCce-------EEEcc-cccc---hh-hhHHHHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 008576 304 SPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AV-NRMFFPY---TQAAFLLVE--RGTDLYLIDRAIT 362 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G~---i~-nrl~~~~---~~ea~~l~~--~G~~~~~ID~a~~ 362 (561)
++++++.++++++.++..+ .++++ ..|. ++ |-+.... +.|++.+.+ .|++++++-.++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999999776 77775 3343 33 4444433 579998887 3889999988885
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.3e-09 Score=90.74 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
-.||+|||+|.+|..++..|.++||+|..+ .++.+..+++...+ ......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence 469999999999999999999999998755 67776665533211 1111122224578
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhh--cCCCceeeecCCCCCHHHHHhhccCccceecccc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~--~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~ 285 (561)
++|++|.+||++ ....+.++|... ..+++||+=.+.+++.+-+.........+..+||
T Consensus 68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999976 567888888876 6788888754445666666555555556666775
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-09 Score=111.43 Aligned_cols=132 Identities=16% Similarity=0.186 Sum_probs=82.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHH----------HHhhcc-CCCchh-------hh-cccCCCCCchh
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEH-RRPWVA-------TL-YKTDKIEPLGE 61 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a----------~~la~~-~~p~~~-------~~-~~~~~~~~~~~ 61 (561)
|+|||++|+|++|+++||||+|||++++.+.+.+++ +++... ..++.. .. ...+-++.. .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence 579999999999999999999999888876322221 111100 000000 00 000000000 0
Q ss_pred HHHHHHH------------HHHHHHhh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhc---CHHHHHHHHHH
Q 008576 62 AREIFKF------------ARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF 125 (561)
Q Consensus 62 ~~~~~~~------------a~~~~~~~-~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~~~~aF 125 (561)
....++. +.+.++.- .+++.++..+|++++.+...+++++++.|......++. ++|+++++++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 0111111 22233332 34677899999999998888999999999888887777 99999999999
Q ss_pred H-hh-ccCCC
Q 008576 126 F-AQ-RGTSK 133 (561)
Q Consensus 126 ~-~k-r~~~k 133 (561)
+ +| |+|+-
T Consensus 327 lidK~r~P~w 336 (379)
T PLN02874 327 VIDKDNAPKW 336 (379)
T ss_pred EEcCCCCCCC
Confidence 7 77 55544
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=104.58 Aligned_cols=173 Identities=14% Similarity=0.053 Sum_probs=104.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-------CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
+||+|||+|.||+++|..|+.+| ++|.+|.++++.-.+ .+.+.+.....+...-++ -.+..++..++|
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~---~~~~~in~~~~N~~ylp~--~~Lp~ni~~tsd 86 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGE---KLSDIINTKHENVKYLPG--IKLPDNIVAVSD 86 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccch---HHHHHHHhcCCCcccCCC--CcCCCceEEecC
Confidence 68999999999999999999998 899999999863100 001112211122111111 013356777888
Q ss_pred cc-ccCCCCEEEEeccCChhhHHHHHHHHHh--hcCCCceeeecCCCCC--------HHHHHh-hccCccceecccccCC
Q 008576 221 YE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTID--------LNLIGE-RTYSKDRIVGAHFFSP 288 (561)
Q Consensus 221 ~~-~l~~aDlVieav~e~~~~k~~v~~~l~~--~~~~~~ii~s~tS~~~--------~~~l~~-~~~~~~r~ig~h~~~P 288 (561)
++ .+++||+||.+|| ++..+++++++.+ .++++++++|.+.++. ++++.. .+..+--++. -|...
T Consensus 87 l~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~Ls-GPs~A 163 (365)
T PTZ00345 87 LKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALS-GANVA 163 (365)
T ss_pred HHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEE-CCCHH
Confidence 74 5899999999999 7788999999988 7777777777665543 333332 2322111111 11100
Q ss_pred C---CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 289 A---HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 289 ~---~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
. ...|...++.+ .+.+....+++++..--.+++...|.-|
T Consensus 164 ~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 164 NDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred HHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 0 11233334444 3677777788887754445555556443
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-08 Score=101.83 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=77.6
Q ss_pred EEEEEcCccchHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 008576 149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (561)
||+|||+|.||.++|..|+.+| ++|++|.+ +++..+. +....+....-+. -.+..++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~--------in~~~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI--------INTTHENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH--------HHhcCCCccccCC--CcCCCCe
Confidence 6999999999999999999999 99999998 3333222 1111111111111 0123456
Q ss_pred ccccccc-ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 216 TGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 216 ~~~~~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
..++|++ .+.+||+||.||| .+..+.+++++.++++++.+++|.+.++..+
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 7778875 4799999999999 6688899999999998888888877665443
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-08 Score=101.60 Aligned_cols=92 Identities=24% Similarity=0.234 Sum_probs=80.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN------------------------------------P 201 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcC---HHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s---~~~~~~~~aF~~k 128 (561)
.+...+|++++.....+++++++.|...+..++.| ....+....|.++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 252 (258)
T PRK06190 202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMAR 252 (258)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 37788999999888888999999999999999988 5666666677665
|
|
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-09 Score=96.96 Aligned_cols=97 Identities=22% Similarity=0.276 Sum_probs=86.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCC----chHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhh
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~----~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (561)
+|+|||.+++.||..+||||+||... ...+.|+++|++|..
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp----------------------------------- 232 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILP----------------------------------- 232 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhcc-----------------------------------
Confidence 58999999999999999999999875 345567788887766
Q ss_pred CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 77 ~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
++|.|+..+|-+|+.+.+.++..++..|..-+++...+.|--+++.+|.+||+|.-
T Consensus 233 -~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 233 -QGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred -CCchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 34569999999999999999999999999999999999999999999999998864
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.2e-09 Score=105.12 Aligned_cols=123 Identities=20% Similarity=0.316 Sum_probs=78.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||.++|..++..|+ +|+++|++++..+ +.. ++.. ..+ .......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a-----~d~~-~~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA-----LDMY-EAS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH-----Hhhh-hhh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 8999999766432 221 1111 111 01111246777888888999
Q ss_pred CCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceee--ecCCCCCHHHHHhhcc-Cccceecc
Q 008576 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTY-SKDRIVGA 283 (561)
Q Consensus 227 aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~-~~~r~ig~ 283 (561)
||+||.++. .|..+.+++.+++.++.+ +++|+ ||...+-...+..... .+.|++|+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence 999999986 244677777788888864 44333 4433222222222222 23566664
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=101.11 Aligned_cols=93 Identities=30% Similarity=0.425 Sum_probs=81.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|++||+.++|+||+++||||++|++ +++++.|.+++++++. .|
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~--~~---------------------------------- 205 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA--PP---------------------------------- 205 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc--CH----------------------------------
Confidence 5799999999999999999999985 6999999999999886 12
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~ 131 (561)
.+...+|+.++.+...++++.+..|...+...+.++|+++++.+|++ |++
T Consensus 206 -~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p 255 (257)
T COG1024 206 -LALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP 255 (257)
T ss_pred -HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence 26778889988887767889999999999998899999999999999 654
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-09 Score=97.84 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=67.2
Q ss_pred cccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCCC
Q 008576 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (561)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (561)
.+.+|..+|+||++|||||.|||.++|++++.+||+++.+.+ | .
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P-----------------------------------~ 224 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-P-----------------------------------T 224 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-h-----------------------------------H
Confidence 467899999999999999999999999999999999999852 3 2
Q ss_pred cHHHHHHHHHHhhcCChH--HHHHH-HHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 82 HPIVCIDVVEAGVVSGPR--AGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 82 A~~~~~~~v~~~~~~~~~--~~l~~-E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
|. ++++.+.+.+-+ .++.. .-.+-.-...|+|++|++.+|++||+|..
T Consensus 225 Al----R~LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 225 AL----RMLKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred HH----HHHHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 44 445554443321 22211 11112224579999999999999998865
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-07 Score=84.62 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=125.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|+.||+|.||..++..|.+.||+|+.||+|+++.+.+. ..+......+++.. +.+..-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~~a~sl~el~---------~~L~~p 60 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGATGAASLDELV---------AKLSAP 60 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCccccCHHHHH---------HhcCCC
Confidence 4799999999999999999999999999999999988754 22311111111111 234555
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCC-------CCeEEEEeC
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLLEIVRT 300 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-------~~lveiv~~ 300 (561)
-.|-..||- -++..++++++.+.+.++-+|+....+..-..+...-. -.-.|+||+.--.. ....-++.|
T Consensus 61 r~vWlMvPa-g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~--l~~kgi~flD~GTSGG~~G~~~G~~lMiGG 137 (300)
T COG1023 61 RIVWLMVPA-GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL--LAEKGIHFLDVGTSGGVWGAERGYCLMIGG 137 (300)
T ss_pred cEEEEEccC-CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH--HHhcCCeEEeccCCCCchhhhcCceEEecC
Confidence 778888884 34778999999999999998887655544333221110 11238898742111 112224455
Q ss_pred CCCcHHHHHHHHHHHHhcCCc---eEEEcc-cccc----hhhhHHHHH---HHHHHHHHHcC---CCHHHHHHHHH
Q 008576 301 NQTSPQVIVDLLDIGKKIKKT---PIVVGN-CTGF----AVNRMFFPY---TQAAFLLVERG---TDLYLIDRAIT 362 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~---~v~v~d-~~G~----i~nrl~~~~---~~ea~~l~~~G---~~~~~ID~a~~ 362 (561)
+.+.++.+.++++.+..- -.+++. ..|- |-|-|-+.+ +.|.+.++++. ++.++|-++++
T Consensus 138 ---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~ 210 (300)
T COG1023 138 ---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN 210 (300)
T ss_pred ---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 789999999999987542 234554 3453 456665554 46888888875 48888888887
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=96.72 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=72.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccccc-cc-C
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYE-SF-K 225 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~-~l-~ 225 (561)
||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..... +.. ......+..+++++ .+ .
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~--------~~~~~~~~~---~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK--------RKNLKYLPT---CHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc--------CCCcccCCC---CcCCCCeEEeCCHHHHHhC
Confidence 79999999999999999999999999999998776543211 00000 100 00112344455554 34 5
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHh-hcCCCceeeecCCCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI 265 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~ 265 (561)
++|+||.||| .....++++++.+ .+.+++.+++.++++
T Consensus 71 ~~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 71 NATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 8999999998 5567788899988 888887666556655
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-07 Score=95.90 Aligned_cols=112 Identities=20% Similarity=0.161 Sum_probs=77.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||+.+|..|+++|++|++++++++.++... +.|... .++ ....+..+++.+.+.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~g~~~~~~~---~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-----------ENGLRLEDGE---ITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-----------HcCCcccCCc---eeecccCCCChhHcCC
Confidence 3799999999999999999999999999999887765432 112100 000 0011222344444589
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~ 275 (561)
+|+||.|++.. ....+++++.+.+.++++|++...++. ...+...++
T Consensus 67 ~d~vila~k~~--~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~ 114 (304)
T PRK06522 67 QDLVILAVKAY--QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG 114 (304)
T ss_pred CCEEEEecccc--cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence 99999999843 457788899988888887777666665 344554443
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.4e-09 Score=102.44 Aligned_cols=92 Identities=18% Similarity=0.116 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhc-CcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCcc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAE-GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPC 536 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~-gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~ 536 (561)
..++.++|++.++++++.+++.| |+ +|..+|... .-||||+ ||++++|..|++...+.-..+...++++
T Consensus 171 c~gf~v~r~l~~y~~~~~~~l~e~g~--~p~~iD~~~-t~fGf~~---g~~~L~d~~gfdv~eal~~gl~~~~~~r---- 240 (380)
T KOG1683|consen 171 CCGFRVNRLLPPYTIGLNELLLEIGA--DPWLIDSLI-TKFGFRV---GERALADGVGFDVAEALAVGLGDEIGPR---- 240 (380)
T ss_pred CCceEEEecccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCccc---cHHHHhhccCccHHHHHhhccchhccch----
Confidence 34689999999999999999998 65 599999977 5599999 9999999999999887776666665555
Q ss_pred HHHHHHHHcCCCcccCCccccccC
Q 008576 537 AFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 537 ~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+.++++++|+.|++||+|||.|.
T Consensus 241 -~~eel~~~~~~g~kT~kg~y~y~ 263 (380)
T KOG1683|consen 241 -IEEELLEKGRAGIKTGKGIYPYA 263 (380)
T ss_pred -hHHHHHHHHhhhhhccCcccccc
Confidence 78899999999999999999996
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-07 Score=85.76 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=81.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+ |.||.-++..|.++|+.|++ .+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence 38999998 99999999999999999861 46
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCC-----CeEEEEeCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-----PLLEIVRTN 301 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~-----~lveiv~~~ 301 (561)
||+||.|+| .....++++++. .+|+..+|... .+.+. ..+|+|.||+..+... ..+-+ ..+
T Consensus 32 ~DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~ 97 (197)
T PRK06444 32 ADHAFLSVP--IDAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND 97 (197)
T ss_pred CCEEEEeCC--HHHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence 899999999 445556666553 25666666543 12221 3479999998653321 22333 356
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
.++++.++.+.++++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 778888889999987 77777665
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=94.18 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=94.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~~ 226 (561)
+||+|||+|.||..+|..|+++|++|+++++ ++.++... +.|...........-.....++.++ ..+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 4899999999999999999999999999999 66655422 1121000000000001112334433 488
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHHhhccCcccee-ccccc-----CCCCC---C-CeE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIV-GAHFF-----SPAHV---M-PLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~i-g~h~~-----~P~~~---~-~lv 295 (561)
+|+||.|++.. ...++++++.+.+.++++|++...++. ...+...++. .+++ |..++ .|-.. . ..+
T Consensus 69 ~d~vilavk~~--~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVKAY--QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEeccc--CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 99999999843 346778888888888887776555665 3445544432 2333 22322 22111 0 011
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+-.-+....+..+.+..++...|.......|
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHH
Confidence 11111222345566677777777755555445
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=93.25 Aligned_cols=170 Identities=10% Similarity=0.119 Sum_probs=98.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhcccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~l 224 (561)
..+||+|||+|.||+.+|..|+++|++|+++.+++. +... +.|.. ....-......+...++.+.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhc
Confidence 346899999999999999999999999999999753 2111 11210 000000000112223344457
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH-HHHhhccCccceec-ccc-----cCCCC---C-CC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHF-----FSPAH---V-MP 293 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig-~h~-----~~P~~---~-~~ 293 (561)
..+|+||.||+.. ...++++.+.+.+.++++|++...++... .+...++. +++++ ..+ ..|.. . ..
T Consensus 71 ~~~D~vilavK~~--~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTT--ANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCC--ChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEECCCC
Confidence 7899999999743 23567888888888888777766677654 45555433 34443 222 22321 0 01
Q ss_pred eEEEEeCCCCc-----HHHHHHHHHHHHhcCCceEEEcccccc
Q 008576 294 LLEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (561)
Q Consensus 294 lveiv~~~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~~G~ 331 (561)
-+.+-.....+ .+..+.+..+++..|.......|....
T Consensus 148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~ 190 (313)
T PRK06249 148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQA 190 (313)
T ss_pred cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHH
Confidence 11111111112 455666777788877666555554443
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5e-08 Score=88.65 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=77.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||.||+++||+.-|||.+|||+++|..++.+++++|-..++.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra----------------------------------- 232 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA----------------------------------- 232 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-----------------------------------
Confidence 789999999999999999999999999999999999988774211
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.....|+-.+....++-.+++..-.+....-++-.|++|+|.+|++||.+.
T Consensus 233 -v~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~ 283 (287)
T KOG1682|consen 233 -VISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN 283 (287)
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence 122345556666666666777777777777778889999999999999774
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.9e-08 Score=95.08 Aligned_cols=96 Identities=26% Similarity=0.425 Sum_probs=73.3
Q ss_pred EEEEcC-ccchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc-ccc
Q 008576 150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES 223 (561)
Q Consensus 150 V~VIG~-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (561)
|+|||+ |.||.++|..++..| .+|+++|++++.++.....+++..... ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988776544433222110 1135666677 578
Q ss_pred cCCCCEEEE--------------eccCChhhHHHHHHHHHhhcCCCceee
Q 008576 224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 224 l~~aDlVie--------------av~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++||+||+ .+.++..+++++.+++.+++ ++++++
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i 116 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWII 116 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence 999999999 55677889999999999998 555443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-07 Score=95.66 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=70.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 223 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP------------------------------------P 223 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 1
Q ss_pred CcHHHHHHHHHHhhcC-ChHHHHHHHHHHHhHHh-cCHH
Q 008576 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET 117 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~-~~~~~l~~E~~~~~~l~-~s~~ 117 (561)
.+...+|+.++..... ++++++..|.+.+.... ++++
T Consensus 224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 3777889999887765 68999999999888877 6666
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-07 Score=88.20 Aligned_cols=105 Identities=26% Similarity=0.326 Sum_probs=71.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
..||+|||+|.||+.+|..|++.|+ +|+++|.+ ++.+.+-.-.. ...|....+.....+.++.+..+++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~-------~~iG~~Ka~~~~~~l~~inp~~~i~ 93 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKA-------SQVGEPKTEALKENISEINPYTEIE 93 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCCh-------hhCCCHHHHHHHHHHHHHCCCCEEE
Confidence 3589999999999999999999999 69999999 65554311000 0112111222233333333322221
Q ss_pred -------------ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 223 -------------SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 223 -------------~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
.++++|+||+| .++.+.|..+++++....+...+++
T Consensus 94 ~~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 94 AYDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred EeeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 36789999999 6899999999999988877766665
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.4e-06 Score=82.16 Aligned_cols=189 Identities=13% Similarity=0.121 Sum_probs=125.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc---
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 223 (561)
...|+|||+|+||..+|..++++|+.|.+|+|+.++.++..+. ++. ..+|.+..++++
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHH
Confidence 3579999999999999999999999999999999998875431 110 013444444433
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHH---HHhhccCccceeccccc-------CCCCCC
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFF-------SPAHVM 292 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~h~~-------~P~~~~ 292 (561)
++.---|+..|-.. .....++++|.+++.++-||+....+...+. ..+.....-.|+|+.-- +.|+
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-- 140 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-- 140 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence 45556667766433 2345788999999999999987655544332 22333344556665432 2233
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCc------eEEEc-ccccc----hhhhHHH---HHHHHHHHHHHcC--CCHHH
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVG-NCTGF----AVNRMFF---PYTQAAFLLVERG--TDLYL 356 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~-d~~G~----i~nrl~~---~~~~ea~~l~~~G--~~~~~ 356 (561)
|++| .+++..+.+.+++..+... ..+++ +..|- |-|-+=. .++.|+..+...+ ++.++
T Consensus 141 ----iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e 214 (473)
T COG0362 141 ----IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE 214 (473)
T ss_pred ----cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4455 5889999999998876421 22344 45564 3455544 3468998888765 49999
Q ss_pred HHHHHHh
Q 008576 357 IDRAITK 363 (561)
Q Consensus 357 ID~a~~~ 363 (561)
|-.++..
T Consensus 215 i~~vF~~ 221 (473)
T COG0362 215 IAEVFEE 221 (473)
T ss_pred HHHHHHH
Confidence 9888764
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.7e-07 Score=92.86 Aligned_cols=100 Identities=16% Similarity=0.025 Sum_probs=75.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||.++|..|...|++|++||++++..... +....++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 489999999999999999999999999999987542110 0112234 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~ 275 (561)
||+|+.++|...+....+.+++.+.++++++|+..+.+.. -..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 9999999999888888887888888999998865444433 345555553
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.2e-07 Score=79.56 Aligned_cols=100 Identities=27% Similarity=0.359 Sum_probs=66.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
+||+|||+ |..|..+|..|...+. +++++|++++.++.-...+.... ...+ ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~---~~~~----------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHAS---APLP----------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHH---HGST----------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhh---hhcc----------ccccccccccccc
Confidence 59999999 9999999999999875 79999999886654332221111 0000 0111223667899
Q ss_pred CCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeec
Q 008576 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 225 ~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
++||+||.+.- .+..+.+++..++.++. ++.+++..
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivv 117 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVV 117 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEe
Confidence 99999998872 13346677777888887 45544433
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.5e-07 Score=90.91 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhh---CHHHHHHHHHHHHHHhCC-CCCc
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSL---GSKYIYSRLEEWSSLYGE-FFKP 535 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~p 535 (561)
.++.||++.++++||+.++++|++ ++++||.++..|+|+++..-|||.++|.. |++........+....++ ++.|
T Consensus 187 G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 187 GFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 479999999999999999999999 89999999999999985555999999987 999999999888888776 7889
Q ss_pred cHHHHHHHH
Q 008576 536 CAFLAERAG 544 (561)
Q Consensus 536 ~~~l~~~~~ 544 (561)
+|++.++++
T Consensus 266 ~~~~~~~~~ 274 (308)
T PRK06129 266 VPWDGELVA 274 (308)
T ss_pred chhhHHHHH
Confidence 999999887
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-06 Score=82.59 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=115.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCCCCEEEEeccCChhhHHHHHHHH
Q 008576 170 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 248 (561)
Q Consensus 170 G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVieav~e~~~~k~~v~~~l 248 (561)
-++|++++|++++++...+. .| +....+. +.+.+||+||.||+ +....+++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 36899999999886543211 11 1122333 34678999999998 66778888988
Q ss_pred HhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 249 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 249 ~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+.+.++.+|+|...+++++++...++...+++.++|+.|......+. +..++..+++..+.+..++..+|+...+ .+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E 142 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PE 142 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CH
Confidence 877777889999999999999998886556799999998887755544 4567778889999999999999976544 33
Q ss_pred c--ccch-hhhHHH---HHHHHHH--HHHHcCCCHHHHHHHHH
Q 008576 328 C--TGFA-VNRMFF---PYTQAAF--LLVERGTDLYLIDRAIT 362 (561)
Q Consensus 328 ~--~G~i-~nrl~~---~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (561)
. ..+. ..-..- .++.+++ ..+..|+++++-.+++.
T Consensus 143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1111 111111 2223332 23457888888777765
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-07 Score=92.40 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=63.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 199 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN------------------------------------M 199 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC------------------------------------H
Confidence 4789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~ 109 (561)
.+...+|+.++.....+++++++.|.+.|
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 200 GAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 47778899998877777888888887765
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-07 Score=90.02 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=72.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||+.++|+||++|||||+|||++++.+.+.+++++|+.. |
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~----------------------------------- 227 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--L----------------------------------- 227 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--c-----------------------------------
Confidence 579999999999999999999999999999999999999973 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCH-HHHHHHHHHHh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE-TCKSLVHIFFA 127 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~-~~~~~~~aF~~ 127 (561)
.++..+|+..+.....++++.++.|...+..++++. ..++-+..|..
T Consensus 228 ~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 228 NGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 255566666666666788899999988887766654 44566667654
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-07 Score=95.72 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=72.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|++|+++||||++||++++ +.+.+++.+++..+ |
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p----------------------------------- 238 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-P----------------------------------- 238 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999987 67778888887731 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~ 126 (561)
.++..+|+.+... ..+.+.++..|...+..++.+++.++.+.+|.
T Consensus 239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2566677777654 23456778888999999999999999999994
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.2e-06 Score=77.43 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=98.5
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-ccccccccCCCCEEEEeccCC
Q 008576 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYESFKDVDMVIEAIIEN 237 (561)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~l~~aDlVieav~e~ 237 (561)
|+.+|..++.+||+|++.|.|.+-.+.. .+++....| +. .++|.++++.+.+.|.-+|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence 7899999999999999999998766542 122222223 22 245667889999999988843
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHH----HHhhccCccceecccccCCCCC----CCeEEEEeCCC------C
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTNQ------T 303 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~----l~~~~~~~~r~ig~h~~~P~~~----~~lveiv~~~~------t 303 (561)
. ..-.+.++|.++++.+++|+ ||.+.|+-. +...+..+.+-+|...+.|+.. ..-.-++.+.. .
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA 171 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA 171 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence 2 34467788999999999886 455554433 3334444545566666665432 11112333332 3
Q ss_pred cHHHHHHHHHHHHhcCCceEEEc
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+++.+++...+++..||.++++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 67899999999999999999875
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.7e-07 Score=90.65 Aligned_cols=97 Identities=24% Similarity=0.303 Sum_probs=66.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..|+..| ++|+++|++++.++.....+.+... ..+. ...+. +.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~---~~~~---------~~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALA---FLPS---------PVKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhh---ccCC---------CeEEE-cCCHHHhC
Confidence 48999999999999999999999 5899999999886654333222110 0000 00122 34567789
Q ss_pred CCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCcee
Q 008576 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii 258 (561)
+||+||.++.. +..+.+++.+++.++++ ++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~v 113 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIF 113 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEE
Confidence 99999999843 33466777788888776 4444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.7e-07 Score=91.40 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=40.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|+|||++|+|+||+++||||+|||++++++.+.++|++|+..
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999999984
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=88.31 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=66.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.||+|||+|.+|.++|..++..|. +++++|++++.++.....+.. ...... ...+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~------~~~~~~-------~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQH------GSAFLK-------NPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHH------hhccCC-------CCEEEECCCHHHhC
Confidence 499999999999999999998886 799999998765542222111 111100 12455567888999
Q ss_pred CCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCc
Q 008576 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 226 ~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
+||+||.+.- .+..+.+++.+++.+++++..
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~ 115 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAI 115 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 9999999752 123356677778888865544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=84.73 Aligned_cols=117 Identities=23% Similarity=0.263 Sum_probs=84.8
Q ss_pred ccceEEEEEcCccchHHHHHHHHhC--CC-----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILS--NY-----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
+...||+|||.|+||++||+.+..+ ++ +|.+|-..++.-.+ .+.+.+.+.+.++.-++-++ .++..++..
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg--~~lP~NvvA 95 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG--IKLPENVVA 95 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC--ccCCCCeEe
Confidence 3447999999999999999988765 23 68888776654443 23344555444444333222 234456777
Q ss_pred cccc-cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC
Q 008576 218 VLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (561)
Q Consensus 218 ~~~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 266 (561)
++|+ +.+.+||++|.++| .+....++++|..++++++..+|.+.++.
T Consensus 96 v~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred cchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 8887 56889999999999 56788999999999999998888776654
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=88.05 Aligned_cols=96 Identities=24% Similarity=0.369 Sum_probs=66.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|+++|..++..|. +++++|++++.++...-.+.... .... . ..+..+.++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~------~~~~------~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA------AFLP------R-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh------hcCC------C-CEEEeCCCHHHhC
Confidence 599999999999999999998886 79999999876654322221111 0000 0 1344445788899
Q ss_pred CCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCc
Q 008576 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 226 ~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
+||+||.+.- .+..+.+++..++.+++++..
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i 149 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI 149 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 9999999852 123466677778888766554
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=82.31 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=74.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||+-+|..|+++|++|+++++..+.++...+ +.|. +.... ....-.+. ..+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~-~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIP-AETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccC-CCCcccccc
Confidence 48999999999999999999999999999998776664321 1111 00000 00000111 111233568
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~ 275 (561)
+|+||.|+- ..-..+.++++.+.+.++++|++.-.++.. ..++..++
T Consensus 71 ~D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 71 IHRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred cCEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 999999984 223446778899999999988777767664 44555554
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.3e-06 Score=85.97 Aligned_cols=97 Identities=28% Similarity=0.391 Sum_probs=66.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..|+..| .+|+++|++++.++.....+.. ......+ ..+. ++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~------~~~~~~~-------~~i~-~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAH------GTPFVKP-------VRIY-AGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHc------cccccCC-------eEEe-eCCHHHhC
Confidence 38999999999999999999999 5899999998876532111111 0000000 1222 46778899
Q ss_pred CCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCcee
Q 008576 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii 258 (561)
+||+||.+++. +..+.+++.+++.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999864 3345677778888877655544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=81.15 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=79.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|+|+|.||+-++..|+++|++|+++-|++. +++.. +.|..-...............+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999999999988875 44432 22321111000000111223334567799
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHH-HHhhccCccceecc
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL-IGERTYSKDRIVGA 283 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig~ 283 (561)
|+||.++- .-...++++.+.+.++++++|.+.--++...+ +.+..+...-+.|+
T Consensus 69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~ 123 (307)
T COG1893 69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGV 123 (307)
T ss_pred CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEE
Confidence 99999984 34556788999999999997777666666444 55554433223344
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=90.05 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=53.9
Q ss_pred ceEEEEEcCccchHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 147 VKKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
|+||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...++..+... + ...++..++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence 369999999999966554 333 346799999999999886555444433221 1 1135677788
Q ss_pred -ccccCCCCEEEEec
Q 008576 221 -YESFKDVDMVIEAI 234 (561)
Q Consensus 221 -~~~l~~aDlVieav 234 (561)
.+++++||+||+++
T Consensus 69 ~~eal~dADfVv~ti 83 (431)
T PRK15076 69 RREALQGADYVINAI 83 (431)
T ss_pred HHHHhCCCCEEeEee
Confidence 47799999999987
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=77.26 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=70.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
-++|+|+|+|.||.+++..|...| ++|+++|++++..+...+.+.. .. + ... ..+. +.+
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~-~~~~~~~~ 79 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIA-YLDLEELL 79 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------cee-ecchhhcc
Confidence 358999999999999999999986 7899999999877653322110 00 0 001 1222 337
Q ss_pred CCCCEEEEeccCChh-hHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc-cCccceecccc
Q 008576 225 KDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVGAHF 285 (561)
Q Consensus 225 ~~aDlVieav~e~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig~h~ 285 (561)
.++|+||.|+|.... .....+. ...++++++++..++....+++.+.. ....+++..|+
T Consensus 80 ~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~ 140 (155)
T cd01065 80 AEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLE 140 (155)
T ss_pred ccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHH
Confidence 899999999987653 1111111 12356778776544433323444333 22334444443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00046 Score=72.07 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=104.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVI------LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
++|+|||.|.+|.+-|..|...|++|+ .+|.+.+.-+.+. +.|. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence 699999999999999999999999998 4443333333221 2231 111222
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC----------C
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V 291 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~----------~ 291 (561)
+.++.||+|+..+|+. . ...+++++.+.+++++++.-+. +..+....-..+....++-+-|=.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 4589999999999976 3 7778899999999999875322 233322111111112222222222221 1
Q ss_pred CC-eEEEEeCCCCcHHHHHHHHHHHHhcCCce--EE-Ec---cc-ccchhhh-HHHHHH-----HHHHHHHHcCCCHHHH
Q 008576 292 MP-LLEIVRTNQTSPQVIVDLLDIGKKIKKTP--IV-VG---NC-TGFAVNR-MFFPYT-----QAAFLLVERGTDLYLI 357 (561)
Q Consensus 292 ~~-lveiv~~~~t~~e~~~~~~~l~~~lGk~~--v~-v~---d~-~G~i~nr-l~~~~~-----~ea~~l~~~G~~~~~I 357 (561)
.| ++.|-+-...+....+.+..+...+|... +. .. +. .-.+..| +++..+ ...-.|+++|++|++-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 22 23333223445567888889999988662 22 11 11 1122222 222222 2334578889888765
Q ss_pred H
Q 008576 358 D 358 (561)
Q Consensus 358 D 358 (561)
-
T Consensus 250 ~ 250 (487)
T PRK05225 250 E 250 (487)
T ss_pred H
Confidence 4
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5e-06 Score=83.25 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=62.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
=++|+|||.|.||.++|..|...|++|+++|+.....+.+. ..|. ... ++ +.++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G~-------------~v~-sl~Eaak 70 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADGF-------------EVM-SVSEAVR 70 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcCC-------------EEC-CHHHHHh
Confidence 36899999999999999999999999999987543322211 1121 111 33 4578
Q ss_pred CCCEEEEeccCChhhHHHHH-HHHHhhcCCCceee
Q 008576 226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~ 259 (561)
.||+|+.++|. .+. +.++ .++.+.++++++++
T Consensus 71 ~ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 71 TAQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL 103 (335)
T ss_pred cCCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE
Confidence 99999999996 444 4555 57888899999775
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.7e-06 Score=84.15 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=72.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|.+||++...... . ..+ .. ..++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~-~~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AE-YRPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CE-ecCHHHHHhh
Confidence 69999999999999999999999999999997643211 0 111 01 1233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+-++..+.++++++++ |+|.-. -..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECcCchhcCHHHHHHHHH
Confidence 999999999888776666677778889999775 454432 335555553
|
|
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.2e-06 Score=78.56 Aligned_cols=95 Identities=18% Similarity=0.060 Sum_probs=83.3
Q ss_pred cccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 2 MLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
.+|+|.++|.||++.|||.+|+|. ++|++.++.+|+.|+.. ++
T Consensus 192 afTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~K------------------------------------Sp 235 (292)
T KOG1681|consen 192 AFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASK------------------------------------SP 235 (292)
T ss_pred HhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccC------------------------------------Cc
Confidence 579999999999999999999986 67899999999999984 33
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.|+..+|+.+..+.+++.+++|..-+.+--..+.|+|.-..+.+-++|+++.
T Consensus 236 vaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 236 VAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred eeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 5888899999999999999999998888877788999998888888866554
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.3e-06 Score=86.12 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=65.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|..+|..++..|. +++++|++++.++.....+.+.. .... ...+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~------~~~~-------~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV------PFTS-------PTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc------cccC-------CeEEE-eCCHHHhC
Confidence 499999999999999999999987 89999999887655332222211 0000 01233 45778899
Q ss_pred CCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCc
Q 008576 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ 256 (561)
+||+||.+.-. |..+.+++..++.++.+...
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~ 117 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGI 117 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 99999987621 33456677777777765433
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.1e-06 Score=84.31 Aligned_cols=96 Identities=24% Similarity=0.383 Sum_probs=67.0
Q ss_pred EEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
|+|||+|.+|.++|..++..| .+++++|++++.++.....+.+.... . ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~------~-------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAF------L-------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccc------c-------CCCeEEECCCHHHhCCC
Confidence 689999999999999999998 58999999998766543332221100 0 01134434568899999
Q ss_pred CEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 228 DlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
|+||.++.. +..+.+++..++.+++ ++++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999999832 3346777778888888 455443
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.1e-06 Score=73.61 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=59.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
-++|+|||.|..|.+.|+.|..+|++|++..+..+ ..+++. +.|. ...+-.+.++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~Gf-------------~v~~~~eAv~ 59 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADGF-------------EVMSVAEAVK 59 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCCC-------------eeccHHHHHh
Confidence 36999999999999999999999999999998876 333322 3332 2222235688
Q ss_pred CCCEEEEeccCChhhHHHHH-HHHHhhcCCCceee
Q 008576 226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~ 259 (561)
.+|+|+..+|+ +...+++ ++|.+.++++.++.
T Consensus 60 ~aDvV~~L~PD--~~q~~vy~~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 60 KADVVMLLLPD--EVQPEVYEEEIAPNLKPGATLV 92 (165)
T ss_dssp C-SEEEE-S-H--HHHHHHHHHHHHHHS-TT-EEE
T ss_pred hCCEEEEeCCh--HHHHHHHHHHHHhhCCCCCEEE
Confidence 99999999994 4556777 78999999999775
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.5e-06 Score=83.03 Aligned_cols=97 Identities=28% Similarity=0.383 Sum_probs=64.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..|+..+. ++.++|++++.++.-...+.+. .- ......++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~------~~------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHA------AA------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhc------ch------hccCceEEecCCChhhhc
Confidence 489999999999999999987754 8999999965543311111000 00 000012233334588999
Q ss_pred CCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCc
Q 008576 226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 226 ~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
++|+||.+. | .|..+.+++.+++.+.+++..
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~i 113 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAI 113 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeE
Confidence 999999987 3 245577888888888887444
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=7e-06 Score=84.45 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=66.7
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|+|||+|.||.++|..|+ ..|.+|+.+|++...... . .+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~-------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------T-------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------h-------------hccccCCHHHHHH
Confidence 58999999999999999994 458899999988643210 0 01112244 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT 274 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~ 274 (561)
+||+|+.++|.......-+-.++.+.++++++|+..+.+..+ ..+.+.+
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 999999999977665432224566778899977644434333 3454444
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.2e-05 Score=80.58 Aligned_cols=103 Identities=17% Similarity=0.085 Sum_probs=72.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..|...|.+|+.||++....+... ..+ +....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 5899999999999999999999999999999763211100 011 1112234 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~ 275 (561)
||+|+.++|.+.+...-+=++....++++++++ |++.-. -..+.+.+.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999888776655567778889999775 555433 235555553
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.5e-06 Score=81.60 Aligned_cols=42 Identities=33% Similarity=0.646 Sum_probs=39.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|++||++++|+||+++||||+|+|++++++.+.+++++++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999984
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.4e-06 Score=83.52 Aligned_cols=98 Identities=18% Similarity=0.319 Sum_probs=63.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
||+|||+|.+|..+|..++..|. +++++|++++.++.-...+ ......... ..-++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL------~~~~~~~~~-----~~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDF------HHATALTYS-----TNTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHH------HhhhccCCC-----CCEEEE-ECCHHHhCC
Confidence 79999999999999999999886 7999999987655422111 111110000 001233 457899999
Q ss_pred CCEEEEecc------C----------ChhhHHHHHHHHHhhcCCCceee
Q 008576 227 VDMVIEAII------E----------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 227 aDlVieav~------e----------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
||+||.+.- + |..+.+++..++.++.+ +++++
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~i 116 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVII 116 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 999999862 1 12355666667777774 44443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=79.56 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=80.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||++... .+. . ....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence 69999999999999999888789999999987421 010 0 001233 34689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhccC-ccceeccccc--CCC---CCCCeEEE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEI 297 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~~-~~r~ig~h~~--~P~---~~~~lvei 297 (561)
||+|+.++|.+.+.+.-+-++....++++++++ |+|.-. -..+.+.+.. .....++--| .|. +..+.+.+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nvii 252 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVIL 252 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEE
Confidence 999999999888776655566777789998775 555432 3455555542 2333343333 232 23466667
Q ss_pred EeC
Q 008576 298 VRT 300 (561)
Q Consensus 298 v~~ 300 (561)
.|+
T Consensus 253 TPH 255 (303)
T PRK06436 253 SPH 255 (303)
T ss_pred CCc
Confidence 777
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=74.23 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=112.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++|++||+|.|..+|+..+...|. ++...-.+...... .+...| .-.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCC------------ceeeechHHH
Confidence 479999999999999999999986 34444332211111 011112 1122334566
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ 302 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~~ 302 (561)
++.+|+++.++- +.+...++.++...+..+.||+|...+.+++.+...+..+.|++..+++.|..+..... +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 789999999984 66777788877776677889999999999999999888788999999999998876666 446777
Q ss_pred CcHHHHHHHHHHHHhcCCce
Q 008576 303 TSPQVIVDLLDIGKKIKKTP 322 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~ 322 (561)
...+..+.+..++...|+..
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 88888899999999998643
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.5e-05 Score=79.48 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=83.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||..+|+.+...|.+|..||++....+... +.| +....+++ .+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753211100 111 11223443 4689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhccC-ccceeccccc--CCC------CCCCe
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYS-KDRIVGAHFF--SPA------HVMPL 294 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~~-~~r~ig~h~~--~P~------~~~~l 294 (561)
||+|+.++|.+.+.+.-+-+++...++++++|+ |++.-. -..+.+.+.. .-.-.++--| .|. +.++.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pN 334 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPN 334 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCC
Confidence 999999999888877666677888889999775 555433 2355555532 2222333323 232 23566
Q ss_pred EEEEeCC
Q 008576 295 LEIVRTN 301 (561)
Q Consensus 295 veiv~~~ 301 (561)
+-++|+-
T Consensus 335 vilTPHi 341 (386)
T PLN03139 335 HAMTPHI 341 (386)
T ss_pred eEEcccc
Confidence 6666654
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-05 Score=78.58 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=72.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||++.+.... .. ......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~-----------------~~---------~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPG-----------------VQ---------SFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCC-----------------ce---------eecccccHHHHHhc
Confidence 69999999999999999999999999999986543110 00 00011233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|.+.+.+.-+-++....++++++++ |++- +.-..+.+.+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHh
Confidence 999999999988877766677778889999775 5553 33345655553
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.7e-05 Score=68.97 Aligned_cols=110 Identities=22% Similarity=0.216 Sum_probs=71.4
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccccccc---cc-ccc
Q 008576 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVL---DY-ESF 224 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~---~~-~~l 224 (561)
|+|+|+|.||.-+|..|.+.|++|+++++.+ .++... +.|. ++... .-..+.... +. +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~---~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPD---GDETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETT---EEEEEEEEEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecc---cceecccccccCcchhcc
Confidence 7899999999999999999999999999998 655422 1221 00000 000011111 11 245
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH-HHHhhccC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYS 276 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~ 276 (561)
..+|+||.|+. ..-..++++.+.+++.+++.|++...++... .+.+..+.
T Consensus 66 ~~~D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 66 GPYDLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp STESEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred CCCcEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 78999999995 3344567888999999998777766667644 45555433
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.7e-05 Score=80.82 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=75.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCc--EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYP--VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~--V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+||+|+|+ |..|..++..++..|+. |+++|+++ +.++.....+. +.....+ ...++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccC---------CCcEEEECCCHH
Confidence 48999998 99999999999999974 99999965 33332211111 1111111 001455566788
Q ss_pred ccCCCCEEEEecc--CC------------hhhHHHHHHHHHhhcCCCceeeecCCCCCHHH--HHhhccC-ccceecc
Q 008576 223 SFKDVDMVIEAII--EN------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA 283 (561)
Q Consensus 223 ~l~~aDlVieav~--e~------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~-~~r~ig~ 283 (561)
++++||+||.++. .. ..+.+++.+.|.+.++ +.+++..++..++-. +...... +.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 8999999999983 11 1446666677777765 555655666555332 2232222 3566665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=76.15 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=82.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|||.|++++|+||.+-|||+++++.+.+.+.++.-+++++.. | +
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l--~----------------------------------p 214 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL--S----------------------------------P 214 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC--C----------------------------------H
Confidence 678999999999999999999999999999999999998883 2 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr 129 (561)
......|++++......+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus 215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 3667788898887777888999999999999999999999999998753
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.3e-05 Score=80.49 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=85.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhh--hcccC-C------------------CCCc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT--LYKTD-K------------------IEPL 59 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~--~~~~~-~------------------~~~~ 59 (561)
|+|||++|+|++|+++||||++||++++.+.+.+++ +++.. .|.... ..... . ++..
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSN-DPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-Hhhcc-CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999988888887 55542 121111 00000 0 0000
Q ss_pred hhHHHHHH------------HHHHHHHh-hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhc---CHHHHHHHH
Q 008576 60 GEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVH 123 (561)
Q Consensus 60 ~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~~~~ 123 (561)
....+++ .++..... +.++|.+...+.+.++.+...++.+.|..|.+.-..++. ++|+.|||+
T Consensus 246 -~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVR 324 (381)
T PLN02988 246 -TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCR 324 (381)
T ss_pred -CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 0111111 12221222 245677888899999999988999999999999999988 699999999
Q ss_pred HHHh
Q 008576 124 IFFA 127 (561)
Q Consensus 124 aF~~ 127 (561)
|-+=
T Consensus 325 A~Li 328 (381)
T PLN02988 325 AILV 328 (381)
T ss_pred HHhc
Confidence 8765
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=71.34 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=103.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc--c
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--l 224 (561)
-.+|+|||.|.||.=+|..+.++||.|...||++- +.+.++ ...+.. +++.+ -
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~~--------yg~~~f---------------t~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEK--------YGSAKF---------------TLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHHH--------hccccc---------------ccHHHHHh
Confidence 35899999999999999999999999999999872 222211 111111 11111 2
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhh-cCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCC-C------CCe
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH-V------MPL 294 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~-~------~~l 294 (561)
+..|+|+.|+. ..-...+++..-.. ++.++|++..+|... .+.+..-++..-.++..|++..|. . .|+
T Consensus 107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 56899999985 33344555554444 567899998888643 445556677777899999985443 2 244
Q ss_pred EEEEe--C-CCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 295 LEIVR--T-NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 295 veiv~--~-~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
|-+-. + ....++..+.+..++...|...|.+.
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 43221 2 23458999999999999998888775
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.6e-05 Score=82.10 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=81.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||+.... +... +.+ +...++++ .+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985221 1100 111 11122343 4689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhccC-ccceeccccc--CCC-----CCCCeE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~~-~~r~ig~h~~--~P~-----~~~~lv 295 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |++.- .-..+.+.+.. .-...++--| .|+ +..+-|
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 272 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNV 272 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCe
Confidence 999999999877765544456666788998775 45432 33456555532 2223333323 232 234556
Q ss_pred EEEeCCC
Q 008576 296 EIVRTNQ 302 (561)
Q Consensus 296 eiv~~~~ 302 (561)
.++|+-.
T Consensus 273 i~TPHia 279 (525)
T TIGR01327 273 IATPHLG 279 (525)
T ss_pred EECCCcc
Confidence 6767644
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.3e-05 Score=74.89 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=68.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|+.||++........ ..+ . ...+++ .++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~-~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------V-EYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------E-EESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------c-eeeehhhhcch
Confidence 6999999999999999999999999999999987543110 111 1 122443 4688
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+...-+=++....++++++++ |++. +.-..+.+.+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEE-eccchhhhhhhHHHHHHh
Confidence 999999999776654444456667788998776 4543 23345655553
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=76.05 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=71.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|.+|+.||++........ .+ +................++ +.++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence 6999999999999999999999999999999732211100 00 0000000000000012234 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC-C--CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+...-+-++....++++++|+ |++ + +.-..+.+.+.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-NvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-NIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999887765545466777789999776 554 3 33345656554
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=7e-05 Score=79.07 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=70.3
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 008576 147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (561)
.-||+|||+ |.+|..+|..|+.. |+ +++++|++++.++.-.-.+.+... ..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~--------------~~~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY--------------PLLREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh--------------hhcCceE
Confidence 359999999 99999999999988 66 799999999887653322222110 0112233
Q ss_pred -ccccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 217 -GVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 217 -~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
.+.+++++++||+||.+.- .|..+.+++.++|.++..++++|+..+
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 2467899999999998761 134466777778888656677555433
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=74.70 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=71.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~ 225 (561)
++|+|||+|.+|+.+|..+..-|.+|..||+ ....... .. ......++++ ++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~-------------~~-------------~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAG-------------VD-------------GVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhc-------------cc-------------cceecccHHHHHh
Confidence 6899999999999999999999999999999 3332211 00 1112234443 78
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~ 275 (561)
.||+|+..+|...+.+.-+=++....+++++++ .|++--. -..+.+.+.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gail-IN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAIL-INAARGGVVDEDALLAALD 248 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEE-EECCCcceecHHHHHHHHH
Confidence 999999999988876554445666778899966 4776433 345555553
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.1e-05 Score=78.23 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=66.0
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--c
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--L 214 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~ 214 (561)
..||+|||+ |.+|+++|..|+..|. +++++|+++. .++.-.-.+.+... .... .
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 459999998 9999999999988764 7999999653 23221111111000 0001 2
Q ss_pred ccccccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 215 LTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 215 i~~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+. +.+++++++||+||.+.- .+..+.+++..+|.++.+++++++..|
T Consensus 70 i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 70 IT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred Ee-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 22 456789999999998762 133467777788888887777665444
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.9e-05 Score=77.58 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=66.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
-||+|||+ |.+|+++|..|...|. +++++|+++ +.++.-. ++......... .. ..+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a------~Dl~~~~~~~~----~~--~~i~- 70 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVA------MELEDCAFPLL----AG--VVAT- 70 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHH------HHHhhcccccc----CC--cEEe-
Confidence 49999998 9999999999998885 799999965 2233211 11111110000 00 0122
Q ss_pred cccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 218 VLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+.+++++++||+||.+.- .+..+.+++..++.++++++++++..|
T Consensus 71 ~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 71 TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 456789999999998761 134467788888999887677665444
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.2e-05 Score=77.66 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=62.0
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-c-cc--c
Q 008576 149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y 221 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (561)
||+|||+ |.+|+++|..|+..++ ++.++|+++ ....+ ++. .... ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a-------~DL--~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVA-------ADL--SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEE-------chh--hcCC--------cCceEEEecCCCchH
Confidence 7999999 9999999999998876 899999987 21111 110 1110 0113432 2 23 7
Q ss_pred cccCCCCEEEEec--------------cCChhhHHHHHHHHHhhcCCCceee
Q 008576 222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 222 ~~l~~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++++||+||.+. ..+..+.+++.+++.++. ++++++
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iii 113 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMIL 113 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEE
Confidence 8899999999886 234557777788888885 455443
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=80.01 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=81.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||+.... +... ..+ +... ++ +.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999985421 1100 111 1111 33 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhccC-ccceeccccc--CCC-----CCCCeE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~-~~r~ig~h~~--~P~-----~~~~lv 295 (561)
||+|+.++|-+.+.+.-+-++..+.++++++++ |+|. +.-..+.+.+.. .-.-.++--| .|+ +..+-|
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 273 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRII-NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNV 273 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCe
Confidence 999999999877765555466777889999775 4443 233456555532 2222333333 232 234556
Q ss_pred EEEeCCC
Q 008576 296 EIVRTNQ 302 (561)
Q Consensus 296 eiv~~~~ 302 (561)
.++|+-.
T Consensus 274 ilTPHia 280 (526)
T PRK13581 274 VVTPHLG 280 (526)
T ss_pred eEcCccc
Confidence 6777644
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.1e-05 Score=75.86 Aligned_cols=93 Identities=22% Similarity=0.319 Sum_probs=61.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-c-c--
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D-- 220 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 220 (561)
+||+|||+ |.+|+++|..++..|. +++++|++ .++. . .++- .... ....+... . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g-~-----alDL--~~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPG-V-----AADL--SHIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccce-e-----ehHh--HhCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 2211 1 1110 1110 00134432 2 2
Q ss_pred ccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceee
Q 008576 221 YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.+.- .|..+.+++..++.++.+ +++++
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vi 114 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALIL 114 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 689999999998861 244467777788888854 66554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00013 Score=70.02 Aligned_cols=100 Identities=25% Similarity=0.417 Sum_probs=69.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+..||.|||+|..|.++|..++.+|. ++.++|.+++.++.. .+|..+....+ ...++....|+..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE------~MDLqH~s~f~-------~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGE------MMDLQHGSAFL-------STPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhh------hhhhccccccc-------cCCceEecCcccc
Confidence 36799999999999999999999986 899999999987652 22222221111 1246667778988
Q ss_pred cCCCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 224 l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
.+++++||..+-. +.++.+.++.++-++ +|++++.
T Consensus 86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~ll 134 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILL 134 (332)
T ss_pred cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEE
Confidence 9999999987621 233444455555554 5677554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.73 E-value=8e-05 Score=74.91 Aligned_cols=90 Identities=23% Similarity=0.254 Sum_probs=61.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||.++|..|...|.+|++++++++..+.+. +.+. . .+. ..++ +.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654321 1121 0 000 1122 34689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+|+||+++|...- . ++..+.++++++|+...|.
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCcC
Confidence 9999999985421 1 2344456778877654443
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.1e-05 Score=77.51 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=65.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (561)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++.-. ++...... .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a------~Dl~~~~~--------~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA------MELEDCAF--------PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee------hhhhhccc--------cccCceEE
Confidence 49999999 9999999999998886 79999996432 22211 11110000 0001 23
Q ss_pred cccccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 216 ~~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
. +.+++++++||+||.+.- .|..+.+++..+|.++.+++++++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3 456789999999998861 134467777888888886566554443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=65.86 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=60.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+++.|+|-|..|.++|+.|...|..|+++|+||-.+-++. -.| ....+-.+.+..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5899999999999999999999999999999996644322 122 1112112457899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHh
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE 272 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~ 272 (561)
|++|-++-...-+..+-|+ .+++++|+++.++. +.+..+.+
T Consensus 80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred CEEEECCCCccccCHHHHH----HhcCCeEEeccCcCceeEeeccccc
Confidence 9999888654334444444 46889999765553 34555544
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=76.27 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=67.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-c----EE--EE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-P----VI--LK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT- 216 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-~----V~--l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (561)
-||+|||+ |.+|.++|..++..|. . |. ++ |++++.++.-.-.+.+... ..+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 59999999 9999999999998875 2 44 44 8888876543222221110 0112233
Q ss_pred ccccccccCCCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 217 GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 217 ~~~~~~~l~~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
.+.+++++++||+||.+. | .+..+.+++...|.++.+++++++..+
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 245778999999999875 1 134467777788888887788665443
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.9e-05 Score=74.51 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~ 42 (561)
|++||++++|+||+++||||+|||+ +++++.|.++|++++..
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999985 68999999999999884
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=66.79 Aligned_cols=95 Identities=26% Similarity=0.327 Sum_probs=58.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-----
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL----- 219 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----- 219 (561)
||+|||+|.+|+.++..|++.|. +++++|.+. +.+.+-.- ... .-|.-..+.....+.++.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLS--QIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999999999999999998 599999986 33322110 000 111111111222222221111
Q ss_pred -------cc-cccCCCCEEEEeccCChhhHHHHHHHHHhh
Q 008576 220 -------DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKY 251 (561)
Q Consensus 220 -------~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~ 251 (561)
+. +.++++|+||+| .++.+.+..+.......
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 11 236889999999 56788887777776654
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.1e-05 Score=74.02 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=53.7
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 699999996 9999999999999999999986543211 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
||+||.|++....+...+ ++++++++..
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDv 230 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDV 230 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEe
Confidence 999999998654443332 6789988754
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=74.59 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=81.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhc---cc------------------CC-CCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLY---KT------------------DK-IEP 58 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~---~~------------------~~-~~~ 58 (561)
|+|||++|+|++|+++||+|++||.+++ +.+.+.+.++... +...-.. .. .. ++.
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTD--DPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccC--CHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 5789999999999999999999999887 5566665554332 1000000 00 00 110
Q ss_pred chhHHHHHH------------HHHHHHHh-hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHh---cCHHHHHHH
Q 008576 59 LGEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLV 122 (561)
Q Consensus 59 ~~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~---~s~~~~~~~ 122 (561)
. ....+++ .++..++. ..++|.+...+.+.++.+...++++.|..|.+.-..++ .++|+.|||
T Consensus 278 ~-sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGV 356 (407)
T PLN02851 278 D-TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGV 356 (407)
T ss_pred C-CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 0 0111111 12222222 24567788889999999998999999999999988887 489999999
Q ss_pred HHHHh
Q 008576 123 HIFFA 127 (561)
Q Consensus 123 ~aF~~ 127 (561)
+|-+=
T Consensus 357 RA~LI 361 (407)
T PLN02851 357 RARLV 361 (407)
T ss_pred HHHhc
Confidence 98765
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=78.43 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCH-HHHHHHHHHHHH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGS-KYIYSRLEEWSS 527 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~-~~~~~~~~~~~~ 527 (561)
.+.++.||++.++++||+.++++|++ ++++||.++..|+|+++..-|||+.+|..|. +.+.+.++++..
T Consensus 183 ~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~ 252 (495)
T PRK07531 183 IDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP 252 (495)
T ss_pred CcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhch
Confidence 34689999999999999999999999 8999999999999988666799999999984 455665555543
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00038 Score=69.50 Aligned_cols=71 Identities=24% Similarity=0.185 Sum_probs=49.3
Q ss_pred ccceEEEEEcCccchHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+...||+|||+|.||..++..+... +++|. ++|+++++.+...+ +.+ .....+++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g------------~~~~~~~~ 61 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLR------------RPPPVVPL 61 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcC------------CCcccCCH
Confidence 3457999999999999999999863 77775 88999887654221 111 01112334
Q ss_pred cc-cCCCCEEEEeccCC
Q 008576 222 ES-FKDVDMVIEAIIEN 237 (561)
Q Consensus 222 ~~-l~~aDlVieav~e~ 237 (561)
++ +.++|+|++|+|.+
T Consensus 62 eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 62 DQLATHADIVVEAAPAS 78 (271)
T ss_pred HHHhcCCCEEEECCCcH
Confidence 33 56799999999964
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00013 Score=74.35 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=60.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccc---
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--- 220 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (561)
.||+|||+ |.+|+.+|..|+..+. ++.++|+++ ....+. +.. ... . ...+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-------Dl~--~~~-------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-------DVS--HIN-------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-------hhh--hCC-------c-CceEEEEeCCCCH
Confidence 59999999 9999999999997775 899999987 111011 000 000 0 012221 223
Q ss_pred ccccCCCCEEEEec--------------cCChhhHHHHHHHHHhhcCCCceee
Q 008576 221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ~~~l~~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.+. +.|..+.+++++.+.++.+ +.+++
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivi 132 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVN 132 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 57899999999875 2345577778888888874 44443
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00043 Score=68.98 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=55.2
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+...+ ..+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999999876 455 5689999887654321 001 112334443
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCcee
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii 258 (561)
+.++|+|++|++. ..-.++..++.+. ..+.++
T Consensus 59 l~~~DvVvi~a~~--~~~~~~~~~al~~-Gk~Vvv 90 (265)
T PRK13304 59 VEDVDLVVECASV--NAVEEVVPKSLEN-GKDVII 90 (265)
T ss_pred hcCCCEEEEcCCh--HHHHHHHHHHHHc-CCCEEE
Confidence 4789999999974 3334555544432 334444
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00018 Score=73.36 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=58.6
Q ss_pred ccceEEEEEcC-ccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc-
Q 008576 145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD- 220 (561)
Q Consensus 145 ~~~~kV~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 220 (561)
.+|+||+|||+ |.+|+.+|..++..+ .+++++|++. ++. . .++... . .. .-.+...++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g-~-----a~Dl~~--~-------~~-~~~v~~~td~ 67 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APG-V-----AADLSH--I-------DT-PAKVTGYADG 67 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--Ccc-c-----ccchhh--c-------Cc-CceEEEecCC
Confidence 46789999999 999999999999665 5899999932 111 0 000000 0 00 012322222
Q ss_pred ---ccccCCCCEEEEecc--C------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 221 ---YESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ---~~~l~~aDlVieav~--e------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.+.- . |..+.+.+++.+.++.. +.+|+
T Consensus 68 ~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~-~~ivi 122 (321)
T PTZ00325 68 ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAP-KAIVG 122 (321)
T ss_pred CchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 678999999998762 1 22245566666766644 45443
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.4e-05 Score=74.89 Aligned_cols=94 Identities=24% Similarity=0.306 Sum_probs=61.7
Q ss_pred EEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCE
Q 008576 152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (561)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 229 (561)
|||+|.+|+.+|..++..+. ++.++|++++.++.....+.... .... ....+. +.+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~------~~~~------~~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAA------SFLP------TPKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhh------cccC------CCeEEe-cCCHHHHCCCCE
Confidence 68999999999999998886 79999998876554222221111 0000 001233 456889999999
Q ss_pred EEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 230 Vieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
||.+.-. +..+.+++..++.++. ++++++
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi 110 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL 110 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 9997621 3346677777888875 455443
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.5e-05 Score=75.61 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=63.9
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--ccc
Q 008576 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LLT 216 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i~ 216 (561)
||+|+|+ |.+|..+|..|+..|. +++++|+++ +.++.-...+.+ ... .... .+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d------~~~--------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQD------CAF--------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhh------hcc--------cccCCcEEe
Confidence 8999999 9999999999998764 499999987 433221100000 000 0001 122
Q ss_pred ccccccccCCCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 217 GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 217 ~~~~~~~l~~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
..+++++++||+||.+. | .+..+.+++..++.++++++.+++..|
T Consensus 68 -~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 68 -TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred -cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34668899999999875 1 144467778888888875666554443
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=64.71 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=51.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
-++|.|||+|.||.+++..|+..|.+ |++++|+.++++...+.+ ....+ .+...+++ +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 46999999999999999999999986 999999998877643221 00000 01112222 246
Q ss_pred CCCCEEEEeccCCh
Q 008576 225 KDVDMVIEAIIENV 238 (561)
Q Consensus 225 ~~aDlVieav~e~~ 238 (561)
.++|+||.|+|-..
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 78999999997553
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00036 Score=70.64 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=60.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||.|.+|..++..|...|.+|+++|++++..+.+. ..|.. . +. ..++ +.+++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~~-~---------~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGLS-P---------FH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCe-e---------ec-HHHHHHHhCC
Confidence 5999999999999999999999999999999987654422 11210 0 00 0122 34678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+|+||+++|... +-++..+.++++++|+...+
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEcc
Confidence 999999998421 22334455677887765444
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00016 Score=74.06 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccccc
Q 008576 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG 217 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (561)
||+|||+ |.+|+.+|..|+..|. +++++|+++.. ++. . .++-.+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g-~--------------~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEG-V--------------VMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccce-e--------------EeehhcccchhcCceec
Confidence 6999999 9999999999998654 59999996542 211 1 00000000 01122333
Q ss_pred c-ccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 218 V-LDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 218 ~-~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+ .+++++++||+||.+.- .|..+.+++..+|.++++++++++..|
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 3 34788999999998761 123356777778888876667665444
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00014 Score=75.82 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=65.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~~ 226 (561)
++|+|||.|.||..+|..+...|++|++||+.....+ +. .. ..++++ +++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------GD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------cc-ccCHHHHHhh
Confidence 6899999999999999999999999999997543210 00 00 123433 688
Q ss_pred CCEEEEeccCChh---hHHHHH-HHHHhhcCCCceeeecCCCCC---HHHHHhhc
Q 008576 227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTSTID---LNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~ 274 (561)
||+|+.++|-..+ -.+.++ ++....++++++++ |+|.-. -..+.+.+
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL 221 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREAL 221 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHH
Confidence 9999999996553 122333 44566688899775 555432 33555554
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00064 Score=69.29 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=74.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|..||+.....+ .+ .. ..+++ .++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6899999999999999999888999999998632100 00 00 12343 4789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhccC-ccceeccccc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~-~~r~ig~h~~ 286 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |++. +.-..+.+.+.. .-. .++-.|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999887765555566777789999875 5553 233456666543 333 455444
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=62.35 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|+|+|.|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998776653
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00052 Score=70.14 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred ceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.||..++..+.. ...+|++|+|++++.++..+.+.+ .+. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 4689999999999999985554 347899999999987765433211 110 12223344 35
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+.+||+||.|++... .++. .+.++++++|...+
T Consensus 187 v~~aDIVi~aT~s~~----pvl~--~~~l~~g~~i~~ig 219 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVR--GEWLKPGTHLDLVG 219 (314)
T ss_pred HhcCCEEEEeeCCCC----CEec--HHHcCCCCEEEeeC
Confidence 789999998887542 2221 13456777554433
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=66.97 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=69.7
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
++|+|||.|.+|..+|+.+. .-|.+|..+|+....-.. . ..+ +.. .+++ .++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE-E-----------RFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH-H-----------hcC-------------cEe-cCHHHHHH
Confidence 69999999999999999987 678899999986421110 0 001 111 2343 478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
.||+|+.++|-+.+.+.-+=++..+.++++++++ |++- +.-..+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888765555566777789999775 6653 33445666654
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00038 Score=66.86 Aligned_cols=32 Identities=41% Similarity=0.503 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.+|+|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999998 59999998
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00027 Score=74.77 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=70.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|+.||+.+... .+ ......+++ .++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 00 011122443 4789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+=++....++++++++ |++. +.-..+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999877765555466777789998775 5553 23345555553
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00076 Score=68.97 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=69.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|+.+..-|.+|+.||+..... . . . ..+++ .++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------~---------~----~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------P---------D----RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------c---------c----ccCHHHHHHh
Confidence 699999999999999999988899999999863210 0 0 0 11233 3789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |++. +.-..+.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999887765555566777789999775 5653 23345655554
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=70.52 Aligned_cols=99 Identities=21% Similarity=0.310 Sum_probs=64.3
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
.||+|||+|.- ...+...|+.. +-+|+++|+|+++++......+ ...+....+ -++..++|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCH
Confidence 48999999873 44555666543 4589999999999876332222 222221111 146667787
Q ss_pred -cccCCCCEEEEecc----------------------------------CChhhHHHHHHHHHhhcCCCceee
Q 008576 222 -ESFKDVDMVIEAII----------------------------------ENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 222 -~~l~~aDlVieav~----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++.+||+||.++- -+..+..++.+++.++++ +++++
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P-~a~li 140 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSP-DAWYL 140 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCC-CcEEE
Confidence 56999999998761 133467788888888874 55443
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0027 Score=62.41 Aligned_cols=202 Identities=17% Similarity=0.235 Sum_probs=114.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHH---H-HHHHHHHHHcCCCCHHHHHhhh-ccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGR---V-RANLQSRVKKGKMTQEKFEKTI-SLLTGVL 219 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~---i-~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~ 219 (561)
|.||+-||+|..|++-...++.+ ..+|+++|.+..++.+-... | +-.++.- +.+.. .++-+++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldev----------v~~crgknlffst 70 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEV----------VKQCRGKNLFFST 70 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHH----------HHHhcCCceeeec
Confidence 46999999999999988877765 56899999999887542211 0 0011111 22222 3567788
Q ss_pred ccc-ccCCCCEEEEecc-------------CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHH---HHhhccCccceec
Q 008576 220 DYE-SFKDVDMVIEAII-------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVG 282 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~-------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig 282 (561)
|.+ .++++|+|+.+|. .|+.......+.|.+....+.|++ .-|+.|+.. +...+.+. --|
T Consensus 71 diekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n--~~~ 147 (481)
T KOG2666|consen 71 DIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHN--SKG 147 (481)
T ss_pred chHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcC--CCC
Confidence 875 5899999999883 244455666667777777777664 567777653 22333322 225
Q ss_pred cccc---CCCC----------CCCeEEEEeCCCCcH--HHHHHHHHHHHhcC-CceEEEcc-----cccchhhhHHHH--
Q 008576 283 AHFF---SPAH----------VMPLLEIVRTNQTSP--QVIVDLLDIGKKIK-KTPIVVGN-----CTGFAVNRMFFP-- 339 (561)
Q Consensus 283 ~h~~---~P~~----------~~~lveiv~~~~t~~--e~~~~~~~l~~~lG-k~~v~v~d-----~~G~i~nrl~~~-- 339 (561)
+||- ||-. ..|--.++.|..|.+ ..++.+..++..+= +..+.... -.-..+|..+..
T Consensus 148 i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqri 227 (481)
T KOG2666|consen 148 IKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRI 227 (481)
T ss_pred ceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHH
Confidence 5551 3321 123344777766543 34555555566542 22233221 111223333321
Q ss_pred -HHHHHHHHHH-cCCCHHHHHHHH
Q 008576 340 -YTQAAFLLVE-RGTDLYLIDRAI 361 (561)
Q Consensus 340 -~~~ea~~l~~-~G~~~~~ID~a~ 361 (561)
.+|....+.+ -|.++.++-.++
T Consensus 228 ssins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 228 SSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhhHHHHHHHHhcCCCHHHHHHHh
Confidence 1333344444 477888887775
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0062 Score=60.95 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=118.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc---
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 223 (561)
...|++||+++||..++..++.+|+.|.+|+|+..+.+..+.+-. +| ..|....++++
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHHH
Confidence 468999999999999999999999999999999999887553211 11 01222333332
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC-CCCH--HHHHhhccCccceecccccC---CCCCCCeEE
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-TIDL--NLIGERTYSKDRIVGAHFFS---PAHVMPLLE 296 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS-~~~~--~~l~~~~~~~~r~ig~h~~~---P~~~~~lve 296 (561)
++.--.||.-|-.. .....++++|.+++.++-||+.... ..+- ....+.....--|+|..--- .+.++| .
T Consensus 67 klk~PR~iillvkAG-~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--S 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAG-APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--S 143 (487)
T ss_pred hcCCCcEEEEEeeCC-CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--c
Confidence 45566667666322 2345678899999998887776433 3332 22333333444566654421 111221 2
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCC-----c--eEEEcc-cccch----hhhHHH---HHHHHHHHHHHc--CCCHHHHHH
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKK-----T--PIVVGN-CTGFA----VNRMFF---PYTQAAFLLVER--GTDLYLIDR 359 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk-----~--~v~v~d-~~G~i----~nrl~~---~~~~ea~~l~~~--G~~~~~ID~ 359 (561)
++|| .+++....++.++..+.. . -..+++ ..|-+ -|-|-. .++.|+..+... |++-++|-.
T Consensus 144 lMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3444 578888888888765421 1 234554 34543 344432 456788888765 468888888
Q ss_pred HHHh
Q 008576 360 AITK 363 (561)
Q Consensus 360 a~~~ 363 (561)
++..
T Consensus 222 vF~~ 225 (487)
T KOG2653|consen 222 VFDD 225 (487)
T ss_pred HHHh
Confidence 7754
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=66.04 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=69.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.+|..+|+.+..-|.+|+.||+.... . ...+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CREG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------cccc----------------cCCHHHHHHh
Confidence 69999999999999999998889999999975321 0 0000 1233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+...-+=++..+.++++++++ |++. +.-..+.+.+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999877765555466777789999775 5553 33446666654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=58.10 Aligned_cols=95 Identities=24% Similarity=0.262 Sum_probs=65.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||.+||+| -|..+|..|++.|++|+.+|+++++++.+.+. + .. ...+.+ +..+.+.-+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECcC-CCCCHHHHhcC
Confidence 589999999 89999999999999999999999987765421 1 00 000111 12334556899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
|+|...-|. +++ +.-+-++.+.+..+.+|..-++
T Consensus 79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCCC
Confidence 999988773 343 4445567777777777754443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00052 Score=68.80 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=52.9
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++|+||| .|.||.+||..|.++|++|++|+ ++++ ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 6999999 89999999999999999999995 5542 11 1246
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
.||+||.|++....+... +++++++++...
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvG 230 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVG 230 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcC
Confidence 799999999864433222 277899887543
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=68.95 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=49.3
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+||+|||+|.. +..+...|+.. +-+|+++|+|+++++..... ..+..+....+ -++..++|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l----~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA----VKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH----HHHHHHhhCCC--------eEEEEECCH
Confidence 59999999875 33455555543 35899999999998763322 22222221111 246677887
Q ss_pred -cccCCCCEEEEec
Q 008576 222 -ESFKDVDMVIEAI 234 (561)
Q Consensus 222 -~~l~~aDlVieav 234 (561)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 6799999999886
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.002 Score=59.81 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=45.7
Q ss_pred EEEEEcCccchHHHH--HHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 149 KVAILGGGLMGSGIA--TALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 149 kV~VIG~G~mG~~iA--~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
||+|||+|..-.+.- ..+... +.+|+++|+|+++++....-.+.. .+.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence 799999998755532 233332 348999999999988654332222 2221111 245667887
Q ss_pred cccCCCCEEEEec
Q 008576 222 ESFKDVDMVIEAI 234 (561)
Q Consensus 222 ~~l~~aDlVieav 234 (561)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 5699999999886
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=63.15 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=60.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccc---cc-
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---YE- 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~- 222 (561)
++|+|||+|.+|.++|..|.+.||+|+++|.+++.+++..+. .++.. -+.. .++ +.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~----------------~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTH----------------VVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceE----------------EEEecCCCHHHHHh
Confidence 589999999999999999999999999999999987763310 00000 0000 111 11
Q ss_pred -ccCCCCEEEEeccCChhhHHHHHHHHHh-hcCCCceeeec
Q 008576 223 -SFKDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASN 261 (561)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~s~ 261 (561)
.+.++|.+|-++.+|. ...++..+.. ......+++-.
T Consensus 62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEe
Confidence 2689999999987653 3344444442 24445556543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0016 Score=68.48 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=59.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+. ..|... ....+.+.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~~~-------------~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGYEV-------------MTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCCEE-------------ccHHHHHcCC
Confidence 5899999999999999999999999999999998876543 223200 0001345689
Q ss_pred CEEEEeccCChhhHHHHHH-HHHhhcCCCceeee
Q 008576 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILAS 260 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~s 260 (561)
|+||+|+... .++. .....++++.+++.
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEE
Confidence 9999998532 2333 33556788887754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00065 Score=67.93 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=36.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-++|.|+|+|.+|.+++..|+..|++|+++++++++++...
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la 157 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELA 157 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35899999999999999999999999999999988776543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00038 Score=72.37 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=64.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~~ 226 (561)
++|+|||.|.||+.+|..+..-|.+|.+||+.... . +. ... ..++++ ++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------EGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------ccc-cCCHHHHHhh
Confidence 69999999999999999999999999999964321 0 00 000 123433 688
Q ss_pred CCEEEEeccCChh----hHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhc
Q 008576 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~----~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~ 274 (561)
||+|+.++|-..+ ...-+=++....++++++++ |+|-- .-..+.+.+
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCL 221 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHH
Confidence 9999999985543 22222245556678999875 56542 233555554
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=69.16 Aligned_cols=75 Identities=25% Similarity=0.318 Sum_probs=47.9
Q ss_pred eEEEEEcCccchH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 148 ~kV~VIG~G~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
+||+|||+|..-+ .+...|+.. +-+|+++|+| +++++.....+++ ..+....+ -.+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence 4899999987633 455555552 3589999999 7887653322222 22221110 14566777
Q ss_pred c-cccCCCCEEEEec
Q 008576 221 Y-ESFKDVDMVIEAI 234 (561)
Q Consensus 221 ~-~~l~~aDlVieav 234 (561)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 7 5689999999886
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00095 Score=67.14 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=51.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|.|||+|.+|.+++..|+..|. +|+++||+.++++...+.+.... .. ..+....++ +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988766443321110 00 011111222 3467
Q ss_pred CCCEEEEeccC
Q 008576 226 DVDMVIEAIIE 236 (561)
Q Consensus 226 ~aDlVieav~e 236 (561)
++|+||.|+|-
T Consensus 192 ~aDiVInaTp~ 202 (284)
T PRK12549 192 AADGLVHATPT 202 (284)
T ss_pred CCCEEEECCcC
Confidence 89999999874
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0032 Score=60.50 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=51.6
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
||++| |+ ..+|.++|+.|+..|++|++..|..+++++....+.+.-...+..+..+.++.+.....+ .+.+..
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~-----~~~~g~ 81 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEAL-----PEEFGR 81 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHH-----HHhhCc
Confidence 56666 77 678999999999999999999999999988665543200001111223333322222111 145678
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|+..
T Consensus 82 iDiLvNNA 89 (246)
T COG4221 82 IDILVNNA 89 (246)
T ss_pred ccEEEecC
Confidence 89999765
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0034 Score=63.36 Aligned_cols=104 Identities=16% Similarity=0.025 Sum_probs=65.9
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhccccccccccccCCCCEEEEeccC
Q 008576 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e 236 (561)
||+.+|..|+++|++|++++|+ +.++... +.|.. ....-......+..+++.+.+..+|+||.|+..
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4443321 12210 000000000022334455557789999999974
Q ss_pred ChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhcc
Q 008576 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTY 275 (561)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~ 275 (561)
. ...++++.+.+++.++++|++...++.. ..+...++
T Consensus 70 ~--~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~ 107 (293)
T TIGR00745 70 Y--QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP 107 (293)
T ss_pred h--hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC
Confidence 3 3467788899999888888776666654 34554443
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00083 Score=69.57 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=38.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (561)
|+||.|||+|.+|+.+|..|+++| .+|++.||+.++++++.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~ 42 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIA 42 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 579999999999999999999999 89999999999988765
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00085 Score=68.54 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=35.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCch------------HHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l------------~~~A~~~a~~la~~ 42 (561)
|++||++++|++|+++||||+|||+.++ ++.+.++++.+...
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 5789999999999999999999998887 66666777666653
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00031 Score=76.46 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=39.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|+|||++|+|+||++|||||+|||++++++++.++|++++..
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~ 229 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQ 229 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999999985
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0029 Score=64.57 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=49.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
-++|+|||+|.||..++..+...| .+|+++|+++++.+...+. .|. . .+. .+++ +.+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-~---------~~~-~~~~~~~l 236 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-N---------AVP-LDELLELL 236 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-e---------EEe-HHHHHHHH
Confidence 468999999999999999998866 6899999999876543221 111 0 000 0112 346
Q ss_pred CCCCEEEEeccCCh
Q 008576 225 KDVDMVIEAIIENV 238 (561)
Q Consensus 225 ~~aDlVieav~e~~ 238 (561)
.++|+||.|++...
T Consensus 237 ~~aDvVi~at~~~~ 250 (311)
T cd05213 237 NEADVVISATGAPH 250 (311)
T ss_pred hcCCEEEECCCCCc
Confidence 78999999998543
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0019 Score=66.24 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=60.2
Q ss_pred ceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|.||...+..+.. ...+|.+||+++++.+...+++. +.+. .+...++. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHH
Confidence 4689999999999997666544 35689999999999876543321 1110 12223444 45
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+++||+||.|+|....+ +. .+.+++++.|.+..|
T Consensus 190 v~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 190 VEGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGA 223 (325)
T ss_pred hccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence 88999999999754322 21 234577776654444
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00087 Score=68.71 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=63.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCC-------CcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT 216 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (561)
-||+|+|+ |.+|+.++..|+..+ .+|+++|+++.. ++. . .++-.+.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~--------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-V--------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-e--------------eeehhhccccccCCce
Confidence 37999999 999999999998855 489999996531 221 0 00000000 0112333
Q ss_pred cccc-ccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 217 GVLD-YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 217 ~~~~-~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
...+ ++++++||+||.+.- .|..+.+++..++.++++++++++..+
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 3445 478999999998761 123345777788888876677555444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=67.55 Aligned_cols=101 Identities=21% Similarity=0.109 Sum_probs=71.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
=++++|||.|.+|..+|+.+..-|.+|..||+++.. +. . +.. .....+ + +.++
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~-~-----------~~~------------~~~y~~-l~ell~ 199 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EA-E-----------KEL------------GARYVD-LDELLA 199 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HH-H-----------hhc------------Cceecc-HHHHHH
Confidence 379999999999999999999778899999998641 11 0 000 011122 3 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERT 274 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~ 274 (561)
.||+|+..+|-..+...-+=++..+.++++.+|+ ||+--. -..+.+.+
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL 250 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDAL 250 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHH
Confidence 9999999999888876666677778889988774 776433 33455555
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0016 Score=68.17 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=71.0
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (561)
++|+|||.|.+|..+|+.+. .-|.+|..||+.... .+........ .....+... .......++++ +
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---ccccccccc--------ccccccCCHHHHH
Confidence 68999999999999999986 669999999987532 1110000000 000000000 01111235544 7
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
+.||+|+.++|-+.+...-+=++..+.++++++++ |++. +.-..+.+.+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 89999999999877765555566777889999775 5553 23345555553
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0025 Score=66.78 Aligned_cols=97 Identities=24% Similarity=0.162 Sum_probs=63.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
-++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+. ..|. ...+..+.+++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~ 250 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKI 250 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhc
Confidence 36899999999999999999999999999999987644322 1221 00011134678
Q ss_pred CCEEEEeccCChhhHHHHHH-HHHhhcCCCceeeecCCC---CCHHHHHh
Q 008576 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTST---IDLNLIGE 272 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~s~tS~---~~~~~l~~ 272 (561)
+|+||.++... .++. +....++++++++..... +....+.+
T Consensus 251 aDVVItaTG~~-----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 251 GDIFITATGNK-----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred CCEEEECCCCH-----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 99999987532 2332 355667888877643331 34445544
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0012 Score=67.41 Aligned_cols=94 Identities=21% Similarity=0.335 Sum_probs=57.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccc-
Q 008576 148 KKVAILGG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD- 220 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (561)
+||+|||+ |.+|.+++..+.. .+++++++|+++.. .+. .++. ... .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~-----alDl--~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGV-----AVDL--SHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cce-----ehhh--hcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999988855 25689999998542 110 0110 000 00012222 334
Q ss_pred ccccCCCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ~~~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.|.-. |..+.+++.+.+.++. ++++++
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi 115 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG 115 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 4778999999998721 2235666777777774 455443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=67.35 Aligned_cols=85 Identities=22% Similarity=0.171 Sum_probs=59.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. .. .++ +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------Ee-cCHHHHHhC
Confidence 5899999999999999999999999999999987654322 1121 00 111 33568
Q ss_pred CCEEEEeccCChhhHHHHHH-HHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~s~t 262 (561)
+|+||.|+.. . .++. +....++++++++...
T Consensus 268 aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 268 GDIFVTATGN-K----DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcC
Confidence 9999998742 1 2343 4556678888776433
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0058 Score=58.21 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=74.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||+|.+|...+..|...|++|++++++.. .+.. ....+.+. ...-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence 6999999999999999999999999999986532 1111 11222111 0000111245889
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--CCCeEEEEeCCCCc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS 304 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~t~ 304 (561)
+|+||-|+. +.++-..+.+ .+..+. ++.+.. .|+. ..|..|.. ..++..-+.+...+
T Consensus 71 adlViaaT~-d~elN~~i~~----~a~~~~-lvn~~d------------~~~~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKE----DLPENA-LFNVIT------------DAES---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHH----HHHhCC-cEEECC------------CCcc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999988765 4455444433 333343 332221 1221 24555543 35566666666678
Q ss_pred HHHHHHHHHHHHh
Q 008576 305 PQVIVDLLDIGKK 317 (561)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (561)
|.....++.-+..
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8776666665554
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00041 Score=75.69 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=39.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|+|||++++|+||+++||||+|||++++++.+.++|++|+..
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~ 233 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAA 233 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999985
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0038 Score=58.84 Aligned_cols=92 Identities=21% Similarity=0.239 Sum_probs=59.1
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.+|++||+|.+|..+...+... .+ .|.+||++.+++..+.+. .+ ....+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~-------------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VG-------------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cC-------------CCccccHHHH
Confidence 3799999999999999876644 24 488999999987653321 00 111245544
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 266 (561)
+.+.|+|+||.. .+..++...++.+. .-++||.| ++.+.
T Consensus 58 ~~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa 96 (255)
T COG1712 58 IAEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA 96 (255)
T ss_pred hhccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence 489999999986 44444544444332 33566654 44455
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0015 Score=65.52 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=51.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 58999999999999999999999 6899999999887654432210 00 01111111 4467
Q ss_pred CCCEEEEeccCC
Q 008576 226 DVDMVIEAIIEN 237 (561)
Q Consensus 226 ~aDlVieav~e~ 237 (561)
++|+||.|+|..
T Consensus 185 ~~DivInaTp~g 196 (278)
T PRK00258 185 DFDLIINATSAG 196 (278)
T ss_pred cCCEEEECCcCC
Confidence 899999999854
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0048 Score=58.88 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=75.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|.|||+|.+|..-+..|++.|.+|++++.+... . +..+.+.+.+. .+...-..+.+.++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence 59999999999999999999999999999876531 1 11112222211 11111112457899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCC--CCCCeEEEEeCCCCcH
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSP 305 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~t~~ 305 (561)
|+||.|+. +.++-..++... ....+++.+.+. |+ -..|+.|. ...+++.-+.+...+|
T Consensus 71 ~lVi~at~-d~~ln~~i~~~a----~~~~ilvn~~d~------------~e---~~~f~~pa~~~~g~l~iaisT~G~sP 130 (205)
T TIGR01470 71 FLVIAATD-DEELNRRVAHAA----RARGVPVNVVDD------------PE---LCSFIFPSIVDRSPVVVAISSGGAAP 130 (205)
T ss_pred EEEEECCC-CHHHHHHHHHHH----HHcCCEEEECCC------------cc---cCeEEEeeEEEcCCEEEEEECCCCCc
Confidence 99998754 455555554433 333333322221 11 12344553 3455555566667788
Q ss_pred HHHHHHHHHHHh
Q 008576 306 QVIVDLLDIGKK 317 (561)
Q Consensus 306 e~~~~~~~l~~~ 317 (561)
.....++.-++.
T Consensus 131 ~la~~lr~~ie~ 142 (205)
T TIGR01470 131 VLARLLRERIET 142 (205)
T ss_pred HHHHHHHHHHHH
Confidence 776666655544
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=59.07 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=85.7
Q ss_pred eEEEEEcCccchHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc--
Q 008576 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (561)
-||++||+|.||+.|+...++ .|++|. +-|++.+...++.++.-..-...++....+.-...-..+.+..++|.+.
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 499999999999999977765 598865 5588887777665432100001111111111111111234555666554
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC-----CCCHHHHHhhccCccceecccccCCCCCCCeEEE
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-----TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS-----~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lvei 297 (561)
....|+||+++--...--+-.+..| ....-+|..|.- +..+.+.+... | |.+
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------G------------viy 155 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQADAA-------G------------VIY 155 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHHhhc-------C------------eEE
Confidence 3567899998732222222222333 333344544432 22233333222 2 223
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
..+..-.|...-.+.+|.+++|..++..+
T Consensus 156 S~~~GDeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 156 SGGAGDEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred eccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence 33444567777788899999999999876
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0014 Score=65.11 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=52.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|+|||. |.||.++|..|.++|++|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 69999999 99999999999999999999942111 11 2367
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+||+||.|++....+..+ .++++++++..+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999855444332 378899887543
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0033 Score=63.97 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=60.4
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.+|...+..+.. .+. +|.+|++++++.++..+++.+ .+ + .+. ..+. +.
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~a 185 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAI 185 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHH
Confidence 3589999999999999999875 464 799999999987765433211 11 0 011 2333 45
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+.++|+||.|+|.... ++.. .+++++.|....|
T Consensus 186 v~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs 218 (304)
T PRK07340 186 PEAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGA 218 (304)
T ss_pred hhcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCC
Confidence 7899999999985432 2322 2467776654444
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0022 Score=60.73 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+ |.+|..++..|+..|++|++++|+.++++...
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 58999996 99999999999999999999999988776544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0034 Score=64.56 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=61.3
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+++...+ + + .+....++ +.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHH
Confidence 4589999999999998877753 454 79999999998776554332110 1 0 11223344 34
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+.++|+||.|+|... .++. ..+++++.|.+..|.
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 789999999998542 2332 345778876555443
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0061 Score=68.95 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=76.9
Q ss_pred EEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccC-ccceecccccCCCC------------CCCe
Q 008576 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAH------------VMPL 294 (561)
Q Consensus 230 Vieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~P~~------------~~~l 294 (561)
||.|+| +....++++++.++++++++|+..+|+.. +..+.+.+.. +.+|+|.||+.... .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 688998 77888999999999999999998888753 3555555543 35799999986553 2456
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.+++.+.++++.++.+.+++..+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 77889889999999999999999999988886
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.004 Score=54.38 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=58.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHh-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGG-GLMGSGIATALIL-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.||+|+|+ |.||..|+..+.. .|++ |..+|++++.... . .+ ... .+.- ...+..++++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g-~-d~----g~~--~~~~--------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG-K-DV----GEL--AGIG--------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT-S-BC----HHH--CTSS--------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc-c-hh----hhh--hCcC--------CcccccchhHHHh
Confidence 48999999 9999999999998 6888 4577877622110 0 00 000 0000 012333455544
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 271 (561)
+..+|+||+.. .++...+.++... ..+.-+++.|+++.-.++.
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYAL---KHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHH---HHT-EEEEE-SSSHHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHHHH---hCCCCEEEECCCCCHHHHH
Confidence 66799999987 3444444444433 3466677778888755443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0036 Score=63.41 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=70.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.-++|+|+|+|.+|..+|+.|..-|..+.-+.|++..-+...+ .+ . ...+..+-+.
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~-----------~--~~~d~~~~~~ 216 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YY-----------A--EFVDIEELLA 216 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hc-----------c--cccCHHHHHh
Confidence 4479999999999999999999989444444555443332111 00 0 0112224578
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT 274 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~ 274 (561)
++|+||.|.|-+.+...-+=+++...++++.+|+...-+-.+. ++.+.+
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 9999999999988877777778888999999886444343333 444444
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0058 Score=59.85 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=48.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
.||+|||.|.||..++..+...+ ++ +.++++++++.+... +.....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------------------~~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------------------GRVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------------------ccCcccCCHHH
Confidence 59999999999999999987643 44 456788775544321 01223445555
Q ss_pred --cCCCCEEEEeccCChhhHHHHHHHH
Q 008576 224 --FKDVDMVIEAIIENVSLKQQIFADL 248 (561)
Q Consensus 224 --l~~aDlVieav~e~~~~k~~v~~~l 248 (561)
....|+||||.. .+..++....+
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~i 82 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGC 82 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHH
Confidence 367999999996 44444444443
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0052 Score=53.43 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=58.1
Q ss_pred EEEEEcC-ccchHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc--
Q 008576 149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (561)
||+|+|+ |.+|..++..+... +++|..+ +++.+..+... . ..+.++. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~----~------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS----E------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH----H------HCccccc--------ccccccccCChh
Confidence 6899995 99999999999885 8887766 65432211111 0 0111100 0000111122
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
..++|+||.|+|.+... +++..+...+.++++++..+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 24899999999966433 3333444556789999888877653
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0041 Score=65.05 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
-.+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3679999999999999999999999999999999876553
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=57.32 Aligned_cols=87 Identities=22% Similarity=0.203 Sum_probs=63.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
-++|+|||.|.-|.+-|..|..+|.+|++--+.... .++ ..+.|. ...+--++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~k-----------A~~dGf-------------~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKK-----------AKEDGF-------------KVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHH-----------HHhcCC-------------EeecHHHHhh
Confidence 469999999999999999999999998876654433 222 223332 1122225689
Q ss_pred CCCEEEEeccCChhhHHHHHH-HHHhhcCCCceee
Q 008576 226 DVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~ 259 (561)
.+|+|+.-+|+. +..++++ +|.+.++.+..+.
T Consensus 74 ~ADvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 74 RADVVMILLPDE--QQKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred cCCEEEEeCchh--hHHHHHHHHhhhhhcCCceEE
Confidence 999999999953 5567777 8999999988664
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.015 Score=59.03 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=73.1
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.||+|||.|.||..++..+... +++++ ++|+++ +.+.. ..+.. .+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~v~-------------~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETPVY-------------AVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCCcc-------------ccCCHHHh
Confidence 5999999999999999988765 78876 579985 32211 01111 11222 33
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+.++|+|+.|+|..... ..+.+.+..+.=+++.. |++. .
T Consensus 58 l~~iDVViIctPs~th~-----~~~~~~L~aG~NVV~s~-------------------------~~h~-----------~ 96 (324)
T TIGR01921 58 LDDVDVLILCMGSATDI-----PEQAPYFAQFANTVDSF-------------------------DNHR-----------D 96 (324)
T ss_pred ccCCCEEEEcCCCccCH-----HHHHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence 57899999999865442 22222223322111110 1111 1
Q ss_pred cHHHHHHHHHHHHhcCCceEEE-cccccch-hhhHHH
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFA-VNRMFF 338 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i-~nrl~~ 338 (561)
.++..+.+...++.-|...+.. +-.|||. +||++.
T Consensus 97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ 133 (324)
T TIGR01921 97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG 133 (324)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence 3567777778888766655544 5568875 678775
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.005 Score=63.33 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=51.7
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
++++|||+|.+|...+..++ ..+. +|++|+|++++.++..+++.+.+ + + .+...+++ +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 58999999999999999987 4564 69999999998876554332110 1 0 12223344 347
Q ss_pred CCCCEEEEeccCC
Q 008576 225 KDVDMVIEAIIEN 237 (561)
Q Consensus 225 ~~aDlVieav~e~ 237 (561)
.+||+||.|+|..
T Consensus 193 ~~aDiVvtaT~s~ 205 (326)
T TIGR02992 193 SGADIIVTTTPSE 205 (326)
T ss_pred ccCCEEEEecCCC
Confidence 8999999999753
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0037 Score=66.50 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~ 185 (561)
++|+|||+|.||..++..|...| .+|++++++.++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 68999999999999999999999 689999999887654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0039 Score=56.98 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=35.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
+||+|||+ |..|+.|+.-..+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 59999998 999999999999999999999999988754
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0038 Score=67.53 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=50.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++++|+|+|.+|.+++..|+..|++|+++|++.++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5899999999999999999999999999999988765533211 001111 1122336789
Q ss_pred CEEEEeccCCh
Q 008576 228 DMVIEAIIENV 238 (561)
Q Consensus 228 DlVieav~e~~ 238 (561)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998654
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0039 Score=66.19 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=60.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 6899999999999999999999999999999987643321 1121 0 1122 34678
Q ss_pred CCEEEEeccCChhhHHHHH-HHHHhhcCCCceeeecCCCCC
Q 008576 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTID 266 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~ 266 (561)
+|+||.|+. + +.++ .+..+.++++++|+ |++...
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 999999864 2 2233 34555678888775 555443
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0025 Score=58.66 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=33.1
Q ss_pred ceEEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+.|+++| |+ -.+|.+|++.|+++|+.|.+.|++.+.+++..
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence 4566666 44 46899999999999999999999988766544
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0023 Score=58.94 Aligned_cols=72 Identities=26% Similarity=0.311 Sum_probs=51.9
Q ss_pred eEEEEEcCccc-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 69999999987 88899999999999999998753222 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||-|++..--+..+ .++++.+|+....
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~ 117 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGI 117 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccC
Confidence 99999999753223222 2345666665443
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.004 Score=66.01 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=59.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|+|.|.+|.++|+.+...|.+|+++|+++.+...+. ..|.- . .++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~~-------------v-v~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGYQ-------------V-LTLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCCe-------------e-ccHHHHHhh
Confidence 6899999999999999999999999999999987643322 12210 0 012 23678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+|+||++.... ..+..+..+.++++++++...
T Consensus 310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcC
Confidence 99999876422 223355556688898886443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0038 Score=54.27 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=57.7
Q ss_pred EEEEEc-CccchHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-ccccc
Q 008576 149 KVAILG-GGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF 224 (561)
Q Consensus 149 kV~VIG-~G~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l 224 (561)
||+||| .|.+|..+...|.++ .++ +.++.++.+.-.... ..... ......+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS--------EVFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH--------HTTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee--------hhccc--------cccccceeEeecchhHh
Confidence 799999 799999999999985 335 455666552111100 00000 00011222222 34568
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
.++|+||.|+|. ....++..++ +..++.|+++++.+..
T Consensus 65 ~~~Dvvf~a~~~--~~~~~~~~~~---~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 65 SDVDVVFLALPH--GASKELAPKL---LKAGIKVIDLSGDFRL 102 (121)
T ss_dssp TTESEEEE-SCH--HHHHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred hcCCEEEecCch--hHHHHHHHHH---hhCCcEEEeCCHHHhC
Confidence 999999999984 3444555544 4578888888887644
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0052 Score=61.80 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
++|.|||+|.+|.+++..|+..|. +|++++|+.++.+...
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999997 6999999998876543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0039 Score=66.48 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (561)
++|+|||+|.||..++..|...|+ +|+++++++++++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 689999999999999999999997 79999999987654
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.006 Score=60.86 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=37.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (561)
++|.|+|+|.++.+++..|++.|. +|++++|+.++.++..+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 689999999999999999999995 79999999999877543
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0037 Score=67.82 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=35.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (561)
-++|+|||+|.||..++..|...|+ +|++++++.++++..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 4689999999999999999999997 699999999887653
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=60.61 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=51.5
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.+|...+..+.. .+ .+|++|+|+++++++..+.+.+.+ + + .+....++ +.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHH
Confidence 3589999999999998888875 45 579999999998877554332110 1 0 12223444 44
Q ss_pred cCCCCEEEEeccCC
Q 008576 224 FKDVDMVIEAIIEN 237 (561)
Q Consensus 224 l~~aDlVieav~e~ 237 (561)
+.++|+||.|+|..
T Consensus 195 l~~aDiVi~aT~s~ 208 (330)
T PRK08291 195 VAGADIIVTTTPSE 208 (330)
T ss_pred HccCCEEEEeeCCC
Confidence 78899999998753
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.034 Score=47.85 Aligned_cols=67 Identities=28% Similarity=0.330 Sum_probs=46.8
Q ss_pred EEEEEcCccchHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c
Q 008576 149 KVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (561)
||+|||+|.+|......+... +.+| .++|+++++.+...+. . .+...+|+++ +
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~-------------~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------Y-------------GIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------T-------------TSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------h-------------cccchhHHHHHH
Confidence 899999999999999888877 4554 4889999887653211 1 1223444443 3
Q ss_pred --CCCCEEEEeccCCh
Q 008576 225 --KDVDMVIEAIIENV 238 (561)
Q Consensus 225 --~~aDlVieav~e~~ 238 (561)
.+.|+|+.|+|...
T Consensus 59 ~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSS 74 (120)
T ss_dssp HHTTESEEEEESSGGG
T ss_pred HhhcCCEEEEecCCcc
Confidence 37899999998543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0052 Score=58.56 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 589999999999999999999997 89999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.007 Score=59.59 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=41.8
Q ss_pred ccceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Q 008576 145 RRVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 192 (561)
Q Consensus 145 ~~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~ 192 (561)
+..+++.|-|+ +.+|..+|..|+++|++|+++.|+++++++..+++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34567888898 9999999999999999999999999999987766544
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.025 Score=51.51 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=29.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
++|.|||+|.+|...+..|...|++|++++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 6899999999999999999999999999964
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.01 Score=60.93 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=58.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.++|+|||+|.+|...+..+... +. .|.+||+++++.++..+++.+. .+ -.+...+++++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHHH
Confidence 46899999999999999988743 44 7899999998887755433211 01 01222344443
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+. +|+|+.|+|.... ++. .+.+++++.|.+..|
T Consensus 192 l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 192 CD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA 224 (326)
T ss_pred hh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 44 9999999985432 221 123466776654443
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.027 Score=65.65 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=36.3
Q ss_pred cccceEEEEEcCccchHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHH
Q 008576 144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGI 187 (561)
Q Consensus 144 ~~~~~kV~VIG~G~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~ 187 (561)
...++||+|||+|.||..+|..|++. +++ |++.|++.+.+++..
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la 623 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV 623 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH
Confidence 45578999999999999999999875 334 999999998776543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0098 Score=58.97 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=53.3
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cc---c
Q 008576 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~ 221 (561)
+||++||.|.+-...-...... |..|..+|+++++.+.+.+-+..... .. .++++. .| .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999976654433333 45789999999998876643331111 01 122221 11 1
Q ss_pred -cccCCCCEEEEecc--CChhhHHHHHHHHHhhcCCCceeeec
Q 008576 222 -ESFKDVDMVIEAII--ENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 222 -~~l~~aDlVieav~--e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
.++.++|+|+.|.- .+.+-|.+++..|.+.+++|++|+.-
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 34788999999863 34457999999999999999988754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0038 Score=58.15 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=32.8
Q ss_pred EEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 150 V~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
|.|+|+ |.+|..++..|++.|++|++.-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 789997 999999999999999999999999987653
|
... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=62.39 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=37.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
=.||.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36999999999999999999999999999999999988755
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0071 Score=64.02 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=34.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (561)
+||.|||+|.||..++..|+..|. ++++++|+.++.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~ 220 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQK 220 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 589999999999999999999995 79999999887654
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.011 Score=58.72 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=29.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhC-CCcEE-EEeCCHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~ 183 (561)
.||+|+|+ |.||..++..+... +++|+ ++|++++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~ 40 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL 40 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc
Confidence 59999998 99999999988764 67755 588887653
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.02 Score=58.05 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=52.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|.+|...+..++.- .+ +|.+|++++++.++..+++.+.+ + -.+...++. +.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 46899999999999888877753 33 79999999999887554432211 1 023333444 45
Q ss_pred cCCCCEEEEeccCC
Q 008576 224 FKDVDMVIEAIIEN 237 (561)
Q Consensus 224 l~~aDlVieav~e~ 237 (561)
+.+||+|+.|++..
T Consensus 180 v~~aDIV~taT~s~ 193 (301)
T PRK06407 180 LRDADTITSITNSD 193 (301)
T ss_pred HhcCCEEEEecCCC
Confidence 89999999988744
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=61.15 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999999999999999998 899999985
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.034 Score=58.31 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=49.4
Q ss_pred ceEEEEEcCccchHHHHH-HHH-h----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 147 VKKVAILGGGLMGSGIAT-ALI-L----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~-~la-~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
..||+|||+|..+.+.-. .+. + .+.++.++|+++++++... ...++.++.-..+ -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~----~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIA----ILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEecC
Confidence 358999999987765432 222 2 2558999999999987322 2233333322111 24666777
Q ss_pred c-cccCCCCEEEEec
Q 008576 221 Y-ESFKDVDMVIEAI 234 (561)
Q Consensus 221 ~-~~l~~aDlVieav 234 (561)
. +++.+||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 7 5699999999886
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0061 Score=60.69 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=23.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEE
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVIL 175 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~l 175 (561)
|.||+|||+|.||..++..+.+. +.++..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~ 30 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDW 30 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEE
Confidence 35999999999999999998876 566543
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0065 Score=60.06 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=63.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--c--ccc-c
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--V--LDY-E 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~--~~~-~ 222 (561)
.||+|||.|..|.--|+...--|.+|++.|+|.+++...-. ... .++.. + .++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd--------~f~-------------~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD--------LFG-------------GRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH--------hhC-------------ceeEEEEcCHHHHHH
Confidence 58999999999999999988889999999999988765221 110 12211 1 123 4
Q ss_pred ccCCCCEEEEecc-CChhhHHHHHHHHHhhcCCCceeee
Q 008576 223 SFKDVDMVIEAII-ENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 223 ~l~~aDlVieav~-e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
.+..+|+||-+|- .....-+-+.+++.+.++++++|+.
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 5899999999871 0111122355666677888988765
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.029 Score=59.85 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=75.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~ 225 (561)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+... ..++. . ...+.+. ..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~-----~~~~~----~---------------~~~~~~~~~~ 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSC-----PYIHE----R---------------YLENAEEFPE 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchh-----HHHhh----h---------------hcCCcHHHhc
Confidence 4689999999999999999999999999999887643310 00000 0 0001112 36
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
++|+||.+.+.+.. ...+++.. ..+..+++.+ +++-.. . .+.. .+.+ -|.|...+-
T Consensus 59 ~~dlvV~s~gi~~~--~~~l~~A~---~~g~~vv~~~------~~~~~~------~--~~~~----~~~I-~ITGT~GKT 114 (418)
T PRK00683 59 QVDLVVRSPGIKKE--HPWVQAAI---ASHIPVVTDI------QLAFQT------P--EFTR----YPSL-GITGSTGKT 114 (418)
T ss_pred CCCEEEECCCCCCC--cHHHHHHH---HCCCcEEEHH------HHHHhh------h--hcCC----CCEE-EEECCCChH
Confidence 79999988765422 33443332 2333343332 111000 0 0001 1222 344555566
Q ss_pred HHHHHHHHHHHhcCCceEEEcc
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+-+.+..+++..|+.....+.
T Consensus 115 TTt~ml~~iL~~~g~~~~~~Gn 136 (418)
T PRK00683 115 TTILFLEHLLKRLGIPAFAMGN 136 (418)
T ss_pred HHHHHHHHHHHHcCCCeEEECC
Confidence 7777788888888876555543
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.035 Score=53.41 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=74.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++|.|||+|.++..=+..|+..|.+|+++..+ ++- .. +.+.+.++ .+.-.-..+++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el-~~-----------l~~~~~i~---------~~~r~~~~~dl~ 84 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEF-LD-----------LKKYGNLK---------LIKGNYDKEFIK 84 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHH-HH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence 48999999999999999999999999999654 331 11 12223221 111011224588
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--CCCeEEEEeCCCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQT 303 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~t 303 (561)
++++||.|+. |.++-+.+ ...+....+++.+... |+ -..|+.|+. ..+++.-+.+...
T Consensus 85 g~~LViaATd-D~~vN~~I----~~~a~~~~~lvn~vd~------------p~---~~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 85 DKHLIVIATD-DEKLNNKI----RKHCDRLYKLYIDCSD------------YK---KGLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred CCcEEEECCC-CHHHHHHH----HHHHHHcCCeEEEcCC------------cc---cCeEEeeeEEecCCEEEEEECCCc
Confidence 9999998875 55544444 4444443333333221 11 123555642 3455555666667
Q ss_pred cHHHHHHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKK 317 (561)
Q Consensus 304 ~~e~~~~~~~l~~~ 317 (561)
+|.....++.-++.
T Consensus 145 sP~lar~lR~~ie~ 158 (223)
T PRK05562 145 SPKTSVFIGEKVKN 158 (223)
T ss_pred CcHHHHHHHHHHHH
Confidence 77766665555443
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.23 Score=50.72 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=33.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|+|+|+|.+|..-.+.....|.+|+.+|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 5999999998887666666668999999999999987755
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0035 Score=66.10 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.2
Q ss_pred EEEEcCccchHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 008576 150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~ 187 (561)
|.|+|+|.+|..++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999987644
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.024 Score=57.84 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=61.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
....++|||+|.++......+..- + -+|.+|+++++..++...++.+. +. ..+...++. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHH
Confidence 356899999999999998887764 3 48999999999988755443221 11 112334444 5
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
++.+||+|+.|+|.+..+ +. .+.+++++-|..
T Consensus 192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~a 223 (330)
T COG2423 192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHINA 223 (330)
T ss_pred HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEe
Confidence 689999999999865422 11 234556766543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.094 Score=44.79 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=56.8
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--cc--cc--cc
Q 008576 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VL--DY--ES 223 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~--~~--~~ 223 (561)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+. +.+. .-+.. ++ .+ ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~-----------~~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELR-----------EEGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-----------HTTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH-----------hccc----------ccccccchhhhHHhhcC
Confidence 67999999999999999997779999999999877644 2221 00111 00 11 13
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+.+||.||.+.+++ ..-..+...+.+..+.-.|++-
T Consensus 60 i~~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 60 IEKADAVVILTDDD-EENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp GGCESEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccccCEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEE
Confidence 67899999988754 3333333444444444455543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.027 Score=57.51 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=60.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|.++...+..+... --+|.+|++++++.++..+.++ +.+ + .+...++. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-~----------~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-F----------AVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-C----------cEEEECCHHHH
Confidence 46899999999999998877653 2489999999999876543321 111 0 22334444 45
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+.+||+|+.|++.... ++. .+.+++++.|....|
T Consensus 190 v~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs 223 (315)
T PRK06823 190 AHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGA 223 (315)
T ss_pred hcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCC
Confidence 8999999998874432 221 124567776654443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.059 Score=58.07 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=35.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999887653
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.027 Score=45.68 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=28.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEEEeC
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVILKEV 178 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~l~d~ 178 (561)
-++++|+|.|.+|.+++..+... +.+|++||+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36899999999999999999998 678999986
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.046 Score=53.04 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=30.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc---EEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~---V~l~d~~ 179 (561)
+||.|+|+|.+|.++|..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999975 9999998
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.019 Score=57.34 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=52.8
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||.|. +|..+|..|...|.+|++++.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6999999987 999999999999999999986532211 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||.|++-.--+.. ..++++++|+...+
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence 9999999974321222 24678888776443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.02 Score=57.41 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=29.6
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~ 179 (561)
++|+|||.|. .|.+++..|...|.+|+++++.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5899999997 9999999999999999999874
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.012 Score=59.35 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~ 181 (561)
+++.|+|+|.+|.+++..|+..|.+ |++++|+.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.039 Score=57.11 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.9
Q ss_pred eEEEEEcCccchHHHHHHHHhC
Q 008576 148 KKVAILGGGLMGSGIATALILS 169 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~ 169 (561)
.||+|+|+|.||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999998765
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0094 Score=62.25 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=36.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (561)
++|.|||+|-||...|.+|+.+| .+|++.+|+.+++.+..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 58999999999999999999999 58999999999877644
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.022 Score=63.68 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=63.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc--cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~ 225 (561)
.+|.|+|.|.+|..+++.|.++|++|+++|.|+++++.+.+ .|.. ...+..+-.+.+ ..+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence 58999999999999999999999999999999998876431 2210 000000000011 2367
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+||.||.+++++.. -..+...+.+..++-.|++-..+
T Consensus 464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCC
Confidence 99999999986543 33444455555555556654333
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.031 Score=60.36 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=36.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-.||.|+|+|.+|...+..+...|..|+++|++.++++.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36999999999999999999999999999999999876644
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.015 Score=58.46 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+|..+.+++..|+..|. +|+++||+.++.+...
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999997 7999999998876644
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.022 Score=63.19 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=60.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc--cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~ 225 (561)
.+|.|+|.|.+|..+|+.|.+.|++|+++|.|+++++.+.+ .|.. ...+...-...+ ..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~~------~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGIR------AVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCCe------EEEcCCCCHHHHHhcCcc
Confidence 58999999999999999999999999999999998876442 1210 000000000011 2367
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+||.||.+++++.+.. .+...+....+.-.|++-
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 9999999998765433 233334444443345543
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.4 Score=46.82 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=74.6
Q ss_pred cccccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc---c-CccceecccccCCCCCCC
Q 008576 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT---Y-SKDRIVGAHFFSPAHVMP 293 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~---~-~~~r~ig~h~~~P~~~~~ 293 (561)
++|.++++++|++|.-.|..- ..-.+++++.+.++.++|| +||.++|...+...+ . ..-.+..+||-.= ..++
T Consensus 133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV-Pgt~ 209 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV-PEMK 209 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCC-CCCC
Confidence 456788999999999998542 2347788899999999987 577788876655443 2 2234555665431 1222
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
.-..+.-...+++.++++.++.+..|+.++++.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 222334456789999999999999999999885
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.22 Score=47.64 Aligned_cols=130 Identities=25% Similarity=0.275 Sum_probs=79.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||+|..|..=+..|++.|.+|+++..+. +.+.. +...+.+. .+.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~---------~~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIK---------WIEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcc---------hhhcccChhhhcC
Confidence 589999999999999999999999999998766 22222 22333221 1111112345667
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--CCCeEEEEeCCCCc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS 304 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~t~ 304 (561)
+++||.|+. |.++-+.+++...+ ..+++ |.. ..|+. ..|+.|.. ..++..-+.+...+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~----~~i~v-Nv~-----------D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARE----RRILV-NVV-----------DDPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHH----hCCce-ecc-----------CCccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999886 55666666554433 33332 222 12221 45556653 45666666666677
Q ss_pred HHHHHHHHHHHHh
Q 008576 305 PQVIVDLLDIGKK 317 (561)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (561)
|.....++.-...
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 7776666655544
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.016 Score=46.22 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
||+|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.015 Score=59.50 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=51.3
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|..+..-+..++. .++ +|.+|+++++++++..+++++ + + -.+...++. ++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~a 189 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEA 189 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhh
Confidence 3589999999999998887765 344 799999999988775543221 0 1 123344555 45
Q ss_pred cCCCCEEEEeccCCh--hhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~--~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+++||+|+.|++... .+ +. ...+++++.|.+..|
T Consensus 190 v~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 190 VRGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGS 225 (313)
T ss_dssp HTTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-
T ss_pred cccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecC
Confidence 899999999987543 21 11 134567776655444
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.02 Score=59.08 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999998 899999874
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.3 Score=53.05 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=32.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+-++|.|||+|..|.++|..|+..|++|+++|.++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 346899999999999999999999999999997653
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.011 Score=62.84 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=31.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
|.+|+|||+|.+|.++|..|++.|++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3699999999999999999999999999999875
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.056 Score=55.77 Aligned_cols=96 Identities=11% Similarity=0.189 Sum_probs=59.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|..+...+..+..- . .+|++|++++++.++..+++.+ .+ + .+...++. +.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHH
Confidence 46899999999998887655542 3 4899999999988775544321 11 0 12334444 45
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+.+||+|+-|++.... ..++. .+.+++++.|....|.
T Consensus 191 v~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 191 VEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred HhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 8999999999864310 01111 1245778766544443
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.037 Score=55.12 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=26.0
Q ss_pred eEEEEEc-CccchHHHHHHHHh-CCCcEE-EEeCC
Q 008576 148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN 179 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~-~G~~V~-l~d~~ 179 (561)
.||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5999999 59999999999986 477755 57743
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.024 Score=58.62 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=29.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.+|+|||+|..|+.++..|++.|. +++++|-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 589999999999999999999997 89999976
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.019 Score=55.55 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 57888976 999999999999999999999999876554
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.058 Score=58.11 Aligned_cols=42 Identities=36% Similarity=0.404 Sum_probs=37.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
..++|.|+|+|.+|..++..|...|++|+++|.+++..+...
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 357999999999999999999999999999999998876543
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.042 Score=54.82 Aligned_cols=39 Identities=31% Similarity=0.238 Sum_probs=34.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+|..+.+++..|+..|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 489999999999999999999997 599999999876653
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.024 Score=56.01 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=36.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 37888877 88999999999999999999999998777655443
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.027 Score=50.34 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 68999999999999999999998 699999773
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.017 Score=60.86 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=33.3
Q ss_pred eEEEEEcCccchHHH-HHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
+||+++|+|.||++. ...|.+.|++|+++|++++.++..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 489999999999865 788888999999999988766553
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.78 Score=44.94 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=73.1
Q ss_pred cccccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHh---hcc-CccceecccccCCCCCCC
Q 008576 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTY-SKDRIVGAHFFSPAHVMP 293 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~-~~~r~ig~h~~~P~~~~~ 293 (561)
++|.++++++|++|.=.|..- ..-.+++++.+.++.++|| +||.++|...+.. .+. ..-.+..+||-.=| .++
T Consensus 131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP-gt~ 207 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP-EMK 207 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCC-CCC
Confidence 456788999999999998542 2347788889999999987 4777777664443 333 23445566664311 121
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
-=.++.-...+++.++++.++.+..|+.++.+.
T Consensus 208 ~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 208 GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 111223446789999999999999999999875
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.041 Score=55.45 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (561)
++|.|||+|..+.+|+..|+..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 589999999999999999999886 7999999965
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.17 Score=55.22 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.062 Score=53.07 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=66.0
Q ss_pred HHHHhhccCCCCCCCCCCCCCcccceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 008576 123 HIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKG 201 (561)
Q Consensus 123 ~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g 201 (561)
.+||......|.. -+-|.|||+|..|+-.+..|++.|. ++.++|.++-.+..... ...+.+..-|
T Consensus 61 ~aFfGee~m~kl~-----------~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNr---Hs~Atl~DVG 126 (430)
T KOG2018|consen 61 YAFFGEEGMEKLT-----------NSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNR---HSCATLADVG 126 (430)
T ss_pred HhhhhhhHHHHhc-----------CcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhh---hhhhhHhhcC
Confidence 3677776655541 2369999999999999999999998 68899988765543221 1111111112
Q ss_pred CCCHHHHHhhhcccccc------------ccccc--cCCCCEEEEeccCChhhHHHHHHH
Q 008576 202 KMTQEKFEKTISLLTGV------------LDYES--FKDVDMVIEAIIENVSLKQQIFAD 247 (561)
Q Consensus 202 ~~~~~~~~~~~~~i~~~------------~~~~~--l~~aDlVieav~e~~~~k~~v~~~ 247 (561)
.-....+...++.|.+. ++.++ .++-|+||+|+- |.+.|.++++-
T Consensus 127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciD-NidtKVdLL~y 185 (430)
T KOG2018|consen 127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCID-NIDTKVDLLEY 185 (430)
T ss_pred CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhh-hhhhhhHHHHH
Confidence 11111122222222221 12222 477899999984 78888887764
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.053 Score=46.71 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=50.3
Q ss_pred eEEEEEc----CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG----~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++|+||| -+.+|.-+...|.++|++|+.++...+.+. .+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence 5899999 588999999999999999999986653221 1223344544
Q ss_pred c-CCCCEEEEeccCChhhHHHHHHHHHhhc
Q 008576 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYC 252 (561)
Q Consensus 224 l-~~aDlVieav~e~~~~k~~v~~~l~~~~ 252 (561)
. ...|+++.++| .+..-++++++.+.-
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAALG 79 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHcC
Confidence 4 68999999998 566667788776653
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.054 Score=53.43 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+ |.+|..++..|+.+|++|++.+++++.++..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999977 9999999999999999999999998766543
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.15 Score=57.11 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=61.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc--ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l 224 (561)
-++|.|+|.|.+|..+++.|.+.|++|+++|.|+++++.+.+ .|.. -..+..+-.+-+ ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGMK------VFYGDATRMDLLESAGA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCCe------EEEEeCCCHHHHHhcCC
Confidence 368999999999999999999999999999999999877542 1210 000000000011 236
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
.++|+||.++.++. .-..+...+.++.++-.|++
T Consensus 463 ~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 463 AKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEE
Confidence 78999999996543 33334444445444444554
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.064 Score=55.46 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=56.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hccccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~ 223 (561)
+.||+|+|+|.||..++..+... +++|+ +.|.+++......... .++. .+.. +...... -..+....+++.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~-~~~~~~~~~~~i~V~~~~~e 74 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVAD-PEREKAFEEAGIPVAGTIED 74 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccC-ccccccccCCceEEcCChhH
Confidence 35999999999999999988765 66755 5566654333211100 0000 0000 0000000 012333334433
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+.++|+||+|.+... -.+... .++..++.+++|++.
T Consensus 75 l~~~vDVVIdaT~~~~--~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 75 LLEKADIVVDATPGGV--GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hhccCCEEEECCCchh--hHHHHH---HHHHCCCEEEEcCCC
Confidence 568999999998542 223332 334456666666664
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.14 Score=55.60 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=33.8
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
...+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 34578999999999999999999999999999987643
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.056 Score=45.43 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=48.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|.|||+|.+|..=++.|++.|.+|+++..+.+..+ +.+. +. ...+ +.+.+
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~ 60 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG 60 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence 6899999999999999999999999999998851111 1111 00 1112 45889
Q ss_pred CCEEEEeccCChhhHHHHHHHH
Q 008576 227 VDMVIEAIIENVSLKQQIFADL 248 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l 248 (561)
+|+||.|.. +..+.+.+.+..
T Consensus 61 ~~lV~~at~-d~~~n~~i~~~a 81 (103)
T PF13241_consen 61 ADLVFAATD-DPELNEAIYADA 81 (103)
T ss_dssp ESEEEE-SS--HHHHHHHHHHH
T ss_pred heEEEecCC-CHHHHHHHHHHH
Confidence 999997764 555555555443
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.027 Score=54.67 Aligned_cols=39 Identities=36% Similarity=0.467 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+ |.+|..++..|+..|++|++.+++++.++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 57888886 9999999999999999999999998776553
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.054 Score=54.09 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.+|.|||+|.+|+.++..|+..|. +++++|.|.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 589999999999999999999997 799999874
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.043 Score=56.07 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=50.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|.|+ |.+|..+|..|+..|++|++.+++++.++...+.+.. -..+..+..+.+++.+....+. +....
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~--v~~~~~Dl~d~~~v~~~~~~~~-----~~~~~ 99 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG--VEVVMLDLADLESVRAFAERFL-----DSGRR 99 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh--CeEEEccCCCHHHHHHHHHHHH-----hcCCC
Confidence 56788877 8999999999999999999999998877655443321 0111222233333333222211 12456
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|+||.+.
T Consensus 100 iD~li~nA 107 (315)
T PRK06196 100 IDILINNA 107 (315)
T ss_pred CCEEEECC
Confidence 88888875
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.022 Score=56.43 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=33.4
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
.|.|=|+ +.+|..||..+++.|..+.+||+|.+..++..+.+
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~ 82 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEI 82 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHH
Confidence 3444455 57899999999999999999999998877655443
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.037 Score=55.98 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 99999999999999999999999988776544
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.05 Score=53.78 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=36.9
Q ss_pred ceEEEEEcC-c-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 147 VKKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 147 ~~kV~VIG~-G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
-+++.|.|+ | .+|.+++..|+..|++|++.|++++.++...+.+
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 367889997 6 6999999999999999999999988777655443
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.25 Score=53.21 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=31.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999985
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.037 Score=54.81 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
+.+.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 51 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEAR 51 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 45677776 7899999999999999999999999877665433
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.035 Score=54.06 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=34.8
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.++++.|.|+ |.+|..++..|+++|++|++.+++++..+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEA 45 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3568888886 999999999999999999999999876554
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.034 Score=54.37 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|+..|++|++.+++++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888887 9999999999999999999999998765543
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.027 Score=55.66 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=34.9
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
|++|.|+|+ |.+|..++..|++.|++|++++++.+.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 367888976 9999999999999999999999998876653
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.033 Score=54.80 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|+..|++|++.+++++.++...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888876 89999999999999999999999987765544
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.032 Score=55.81 Aligned_cols=42 Identities=33% Similarity=0.489 Sum_probs=33.0
Q ss_pred ceEEE-EEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 147 VKKVA-ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 147 ~~kV~-VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
|+|++ |.|+|.+|..+|..|+ .|++|++.+++.+.++...+.
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~ 43 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKT 43 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHH
Confidence 34554 4588999999999996 799999999998876654433
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.061 Score=56.33 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=51.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
.++++|||+|.++......++.- .+ +|.+|+++++++++..+++.+.+ . +. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~----~-~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY----P-QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc----C-CC----------ceEEEeCCHHH
Confidence 46899999999999999888763 23 89999999998877554332211 0 10 013334454 4
Q ss_pred ccCCCCEEEEecc
Q 008576 223 SFKDVDMVIEAII 235 (561)
Q Consensus 223 ~l~~aDlVieav~ 235 (561)
.+.+||+|+-|++
T Consensus 220 av~~ADIVvtaT~ 232 (379)
T PRK06199 220 VVRGSDIVTYCNS 232 (379)
T ss_pred HHcCCCEEEEccC
Confidence 5889999998885
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.045 Score=54.89 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|+++|++.+.+++..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 57888876 89999999999999999999999987766543
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.033 Score=54.85 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.9
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+.+.|.|++ .+|.++|..|++.|++|++.+++.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 467777885 799999999999999999999984
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.075 Score=56.75 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=27.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--------CC--c-EEEEeCCHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILS--------NY--P-VILKEVNEKF 182 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--------G~--~-V~l~d~~~~~ 182 (561)
.-||+|||+|.+|.+++..|.++ |. + +.++|++.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~ 49 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK 49 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence 35899999999999999877553 33 3 4567888654
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.021 Score=59.33 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 799999874
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.041 Score=54.14 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=34.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
-++|.|+|+ |.+|..++..|++.|++|++.++++..++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 46 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA 46 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 368999988 999999999999999999999999876554
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.06 Score=53.72 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=51.9
Q ss_pred eEEEEEcCccc-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|+|||.|.. |.++|..|.+.|..|+++..... ++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence 68999999887 99999999999999998753221 12 2368
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+||+||.|++-.- ++.. ..++++++++...
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcc
Confidence 8999999998322 2222 5678899886543
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.027 Score=58.77 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=30.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 489999999999999999999997 89999987
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.058 Score=53.66 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888877 89999999999999999999999998876543
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.066 Score=53.30 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=33.5
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++.|+|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~ 41 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTV 41 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6788876 89999999999999999999999987765533
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.052 Score=53.05 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 58899987 89999999999999999999999997765543
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.21 Score=50.73 Aligned_cols=196 Identities=18% Similarity=0.170 Sum_probs=97.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--------CCcEEE---EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS--------NYPVIL---KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--------G~~V~l---~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (561)
..+|+|+|.|++|++++..|.++ |.++.+ .|++...... . .... ........
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~-~-------------~~~~---~~~~~~~~ 65 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRD-L-------------DLLN---AEVWTTDG 65 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccc-c-------------cccc---hhhheecc
Confidence 46999999999999999988775 344433 3444333210 0 0000 00000000
Q ss_pred cccc--cccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHH--HHHhhccCccceecccccCCCC
Q 008576 216 TGVL--DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLN--LIGERTYSKDRIVGAHFFSPAH 290 (561)
Q Consensus 216 ~~~~--~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~P~~ 290 (561)
.... +.-...+.|+|||+++-+...-+. +..+.+.+..+. +|+.|-..+... ++.+..... |.+++.-+.
T Consensus 66 ~~~~~~~~~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~----g~~l~yEAt 140 (333)
T COG0460 66 ALSLGDEVLLDEDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKN----GVKLLYEAT 140 (333)
T ss_pred cccccHhhhccccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHh----CCeEEEEee
Confidence 0001 112346789999999987777775 566666666666 455555444332 444333211 333332221
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCc-
Q 008576 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFL-LVERGTDLYLIDRAITKFGMPM- 368 (561)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~-l~~~G~~~~~ID~a~~~~G~~~- 368 (561)
. ..| + -.+..++..+. |.++..+.- |+|-. +|..+. |.+++.+.+|+-+-.+.+|+.-
T Consensus 141 V------~gG--i--PiI~~lr~~l~--g~~I~~i~G----IlNGT----~NyIlt~m~~~~~~f~dal~eAq~lGyAE~ 200 (333)
T COG0460 141 V------GGG--I--PIIKLLRELLA--GDEILSIRG----ILNGT----TNYILTRMEEGGLSFEDALAEAQELGYAEA 200 (333)
T ss_pred e------ccC--c--chHHHHHhhcc--cCceEEEEE----EEecc----HHHHHHHHHccCCCHHHHHHHHHHcCCCCC
Confidence 1 111 1 13344444443 444444421 22222 233322 2334457777666666566631
Q ss_pred cHHHHHHHhchHHHHHHH
Q 008576 369 GPFRLADLVGFGVAIATG 386 (561)
Q Consensus 369 GPf~~~D~~Gld~~~~~~ 386 (561)
=| ..|.-|+|+..+..
T Consensus 201 DP--t~DleG~DaA~Kl~ 216 (333)
T COG0460 201 DP--TDDLEGIDAARKLV 216 (333)
T ss_pred CC--CCCccchHHHHHHH
Confidence 12 45888999877643
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.071 Score=55.22 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=56.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-
Q 008576 147 VKKVAILGG-GLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (561)
|.||+|||+ |.+|..++..|... +++++. .++ .+..+... +. .+.+. .. .... ..+++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~----~~------~~~~~-----~~-~~~~-~~~~~~ 63 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLS----DV------HPHLR-----GL-VDLV-LEPLDP 63 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchH----Hh------Ccccc-----cc-cCce-eecCCH
Confidence 469999997 99999999999887 677654 553 22111110 00 00000 00 0000 11111
Q ss_pred -ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
...++|+|+.|+|... -.++..++ ...++.|+++++...+.
T Consensus 64 ~~~~~vD~Vf~alP~~~--~~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 64 EILAGADVVFLALPHGV--SMDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HHhcCCCEEEECCCcHH--HHHHHHHH---HhCCCEEEECCcccCCC
Confidence 3467999999999642 23333333 34688888998877653
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.6 Score=46.68 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=89.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHh-hhcccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFEK-TISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~~~~~~~~-~~~~i~~~~~~~ 222 (561)
..|+|+|+|..|.+.++-...+|. +++.+|+|+++.+.+++ -|. +.+.+... ....|.--+
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~-----------fGaTe~iNp~d~~~~i~evi~EmT--- 259 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE-----------FGATEFINPKDLKKPIQEVIIEMT--- 259 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh-----------cCcceecChhhccccHHHHHHHHh---
Confidence 579999999999999999988886 89999999999887653 221 11211111 111111111
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE--EEeC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve--iv~~ 300 (561)
+ .+.|+-+||+- +.++.++.+....+.-....+|-...++. .+.+|+|.=.. .+.+. +..|
T Consensus 260 d-gGvDysfEc~G-~~~~m~~al~s~h~GwG~sv~iGv~~~~~--------------~i~~~p~~l~~-GR~~~Gs~FGG 322 (375)
T KOG0022|consen 260 D-GGVDYSFECIG-NVSTMRAALESCHKGWGKSVVIGVAAAGQ--------------EISTRPFQLVT-GRTWKGSAFGG 322 (375)
T ss_pred c-CCceEEEEecC-CHHHHHHHHHHhhcCCCeEEEEEecCCCc--------------ccccchhhhcc-ccEEEEEeccc
Confidence 1 67999999996 45555555443332222222332222221 12222221111 11111 1122
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT 352 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~ 352 (561)
-+...+.=..+..+++. .+ +-.-||.+++-+--+|+|+.++.+|-
T Consensus 323 ~K~~~~iP~lV~~y~~~----~l---~ld~~ITh~l~f~~In~AF~ll~~Gk 367 (375)
T KOG0022|consen 323 FKSKSDIPKLVKDYMKK----KL---NLDEFITHELPFEEINKAFDLLHEGK 367 (375)
T ss_pred ccchhhhhHHHHHHHhC----cc---chhhhhhcccCHHHHHHHHHHHhCCc
Confidence 22233333333333332 11 12457888888888999999998873
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=56.78 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+.|.|.|+ |.+|..++..|++.|++|++++|+.+.++...
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 46778877 99999999999999999999999998776544
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.074 Score=51.75 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=29.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
||.|||+|.+|+.++..|+..|. +++++|.|.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999997 789999763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.043 Score=54.17 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=35.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|.+++..|++.|++|++.+++++.++...+.+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~ 51 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAI 51 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777776 89999999999999999999999988776655443
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.046 Score=53.74 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=34.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888876 99999999999999999999999988766543
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.049 Score=53.41 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|+|+ |.+|..+|..|+..|++|++.+++++.++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 39 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 36888886 899999999999999999999999887654
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.23 Score=53.68 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=32.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
.+||+|+|.|..|.++|..|.+.|++|+++|.++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 36899999999999999999999999999998753
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.067 Score=52.68 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=36.7
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
.++|.|.|+ |.+|..++..|+++|++|++.+++++..++..+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 357888887 9999999999999999999999999877665543
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.053 Score=52.74 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 789998763
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.062 Score=52.73 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=35.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 47 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLES 47 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHH
Confidence 57888876 8999999999999999999999998877665433
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.05 Score=53.50 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35667765 89999999999999999999999987766544
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.06 Score=52.72 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (561)
.||.|+|+|.+|+.+|..|+..|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999997 7899998753
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.066 Score=52.29 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-----------CcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-----------~~V~l~d~~~ 180 (561)
.||.|||+|..|+.++..|++.| .+++++|.|.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 58999999999999999999864 2899999763
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.067 Score=52.49 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|+..|++|++++++++..+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 57889985 99999999999999999999999988776544
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.059 Score=52.98 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
+++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777776 899999999999999999999999887766543
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.025 Score=59.42 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.||.|||+|..|+.++..|+..|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999998 79999987
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.065 Score=54.81 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
+||.|.|+ |.+|+.++..|.++||+|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 38999986 9999999999999999999999987543
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.045 Score=53.96 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=33.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.++.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~ 41 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQA 41 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 47788875 899999999999999999999999877654
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.036 Score=58.89 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=31.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
++|+|||+|.+|.++|..|++.|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3799999999999999999999999999999753
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.085 Score=52.58 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=51.1
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||.| ..|.++|..|.+.|..|+++......+. +.++.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 699999998 8999999999999999999864332221 13578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
||+||-|+.-.--+.. ..++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDv 228 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDI 228 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEe
Confidence 9999999963322222 345788887653
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.069 Score=54.56 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=36.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+++.|.|+ +.+|..+|..|++.|++|++.+|+.+..+++.+.+
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l 58 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI 58 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45666665 88999999999999999999999998877766554
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.044 Score=53.98 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|+++|++|++.+++.+.++...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAA 47 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 46888876 99999999999999999999999988766543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.049 Score=53.51 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
+++.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD 51 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 46777777 899999999999999999999999887665443
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.073 Score=52.91 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=34.2
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+|.|.|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6788876 99999999999999999999999988766544
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.06 Score=55.51 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=36.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.+++..+.+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~ 51 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEEC 51 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 56778887 89999999999999999999999998877655443
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.14 Score=53.33 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (561)
+|+|+|+|.||.-.++.+...|. +|++.|+++++++.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 89999999999998888888885 78888999999987653
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.11 Score=46.17 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=52.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|+|- ...|..+|..|.+.|.+|++++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 69999988 56699999999999999999985432221 23678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||-++.-...++. +.+++++++++..
T Consensus 72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg 100 (140)
T cd05212 72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCS 100 (140)
T ss_pred CCEEEEecCCCCccCH-------HHcCCCCEEEEcC
Confidence 9999999975533333 3467899887543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.051 Score=51.36 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHh
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADS 512 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~ 512 (561)
.+..||+.++++||.-+++..|+. +..|+|..|..|+|.+...-||++.+..
T Consensus 189 Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HL 240 (313)
T KOG2305|consen 189 GFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHL 240 (313)
T ss_pred cceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhc
Confidence 378999999999999999999999 7999999999999988888899998754
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.16 Score=50.22 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=27.5
Q ss_pred eEEEEEcC---ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGG---GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~---G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+.+.|.|+ +.+|.++|..|++.|++|++.+++.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~ 42 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPD 42 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 45677787 4899999999999999999887654
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.09 Score=51.10 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999997 899999764
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.046 Score=54.10 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|..+|..|++.|++|++.+++.+.+++..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVA 47 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57777876 99999999999999999999999987665533
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.077 Score=52.16 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 799998763
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.073 Score=54.95 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=35.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~ 51 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE 51 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 57888877 8999999999999999999999999877665443
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.067 Score=52.65 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 50 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQAR 50 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57788876 89999999999999999999999988766544
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.076 Score=51.88 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=34.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46777775 99999999999999999999999988766543
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.26 Score=53.14 Aligned_cols=129 Identities=20% Similarity=0.294 Sum_probs=77.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++|.|||+|.++..=+..|+..|.+|+++... ++- . .+...+.+. .+.-.-..+++.
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~-----------~l~~~~~i~---------~~~~~~~~~dl~ 71 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-T-----------AWADAGMLT---------LVEGPFDESLLD 71 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-H-----------HHHhCCCEE---------EEeCCCChHHhC
Confidence 69999999999999999999999999998543 221 1 112223221 011011124588
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCC--CCCCeEEEEeCCCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~t 303 (561)
++++||.|+. |.++-+. |...+....+++ |...- |+ ..+|+.|. ...+++.-+.+...
T Consensus 72 ~~~lv~~at~-d~~~n~~----i~~~a~~~~~lv-N~~d~-----------~~---~~~f~~pa~~~~g~l~iaisT~G~ 131 (457)
T PRK10637 72 TCWLAIAATD-DDAVNQR----VSEAAEARRIFC-NVVDA-----------PK---AASFIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_pred CCEEEEECCC-CHHHhHH----HHHHHHHcCcEE-EECCC-----------cc---cCeEEEeeEEecCCEEEEEECCCC
Confidence 9999988865 4444444 444454444554 33221 11 12455563 34667777777778
Q ss_pred cHHHHHHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKK 317 (561)
Q Consensus 304 ~~e~~~~~~~l~~~ 317 (561)
+|.....+++-++.
T Consensus 132 sP~~a~~lr~~ie~ 145 (457)
T PRK10637 132 SPVLARLLREKLES 145 (457)
T ss_pred CcHHHHHHHHHHHH
Confidence 88777777666554
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.13 Score=48.94 Aligned_cols=170 Identities=15% Similarity=0.228 Sum_probs=90.6
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS--RVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~--~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+|+.|.|.. .++-+||+.|.++|.++...-.++ ++++-.+.+.+.+.. ..+.+.-+.++++.....+. +
T Consensus 7 K~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~-----~ 80 (259)
T COG0623 7 KRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIK-----K 80 (259)
T ss_pred ceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH-----H
Confidence 577777764 578899999999999987776665 333322222222211 12334444444554444333 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc----cCccceecccccCCCCCCCeEEEE
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YSKDRIVGAHFFSPAHVMPLLEIV 298 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~~~~r~ig~h~~~P~~~~~lveiv 298 (561)
....-|.+|-|+--.+ |.++-.+..+.-.++-.++-+.|+.+...++... .....++.+-|+-....+|.--++
T Consensus 81 ~~g~lD~lVHsIaFa~--k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvM 158 (259)
T COG0623 81 KWGKLDGLVHSIAFAP--KEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVM 158 (259)
T ss_pred hhCcccEEEEEeccCC--hHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchh
Confidence 4667888888874211 2222222222222233445567777777766544 334556666555333322222232
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.- .+...-..++-+...+|+.-++|+.
T Consensus 159 Gv--AKAaLEasvRyLA~dlG~~gIRVNa 185 (259)
T COG0623 159 GV--AKAALEASVRYLAADLGKEGIRVNA 185 (259)
T ss_pred HH--HHHHHHHHHHHHHHHhCccCeEEee
Confidence 22 1233333445556678998888874
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.066 Score=52.24 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=35.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 67888886 99999999999999999999999988766544
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.3 Score=49.22 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=55.7
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l 224 (561)
.||+|||+|.+|..+...+.+. +.++ .++|++++...... ..+.|.-. ....+..+. ..++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~---------A~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR---------ARRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH---------HHHcCCCcccCCHHHHHh-------CcCC
Confidence 5899999999999977777754 5665 47899886432111 11223211 011222111 0124
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
.+.|+|++|++.... .+.. ......++.++.+++..
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a---~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHA---AKLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHHH--HHHH---HHHHHcCCeEEECCccc
Confidence 679999999985422 2222 22345677777777653
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.081 Score=52.79 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=29.5
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
+.+.|.|++ .+|.++|..|++.|++|++.+++.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~ 45 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL 45 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH
Confidence 356666886 79999999999999999999988643
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.085 Score=53.58 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=35.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+..+.+.+.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56777776 99999999999999999999999988776554433
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.12 Score=47.53 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=30.5
Q ss_pred ccceEEEEEcCccchHHHHHH-HH-hCCCc-EEEEeCCHHHH
Q 008576 145 RRVKKVAILGGGLMGSGIATA-LI-LSNYP-VILKEVNEKFL 183 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~-la-~~G~~-V~l~d~~~~~~ 183 (561)
.++.+|.|||+|++|.+++.. +. ++|.+ |-++|.+++.+
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V 123 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV 123 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh
Confidence 457899999999999999853 33 45776 45889999854
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.08 Score=52.81 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=33.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|..++..|++.|++|++++++.+.++...
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVV 51 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777776 89999999999999999999999987665543
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.16 Score=49.28 Aligned_cols=32 Identities=31% Similarity=0.294 Sum_probs=29.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEE-EEeC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVI-LKEV 178 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~-l~d~ 178 (561)
-++|+|.|.|.+|..+|..|...|.+|+ +.|.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3699999999999999999999999988 7787
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.041 Score=57.74 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
|++|.|||+|.-|...|..|++.|++|+++|++++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 56899999999999999999999999999998765
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.07 Score=52.78 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=33.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 45 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLAS 45 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46777776 889999999999999999999999877654
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.17 Score=49.08 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+++.|++.|++|++.+++++.++..
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58889987 8899999999999999999999998876654
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.066 Score=52.21 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=33.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|+++|++|++.+++.+.+...
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888885 9999999999999999999999998765543
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.11 Score=51.46 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|+..|++|++.+++++.++..
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888877 8999999999999999999999998776543
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.098 Score=51.91 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+.+.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKI 52 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 35566676 78999999999999999999999998876655443
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.19 Score=47.09 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=56.1
Q ss_pred ceEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc--cc---
Q 008576 147 VKKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD--- 220 (561)
Q Consensus 147 ~~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~--- 220 (561)
=++|+|||-+ ..|.++|..|.+.|..|+++|++--.+-. +.+.+ +-+.+ .+
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~ 118 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEA 118 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhh
Confidence 3699999985 56999999999999999999865432210 00000 00001 11
Q ss_pred -c-cccCCCCEEEEeccCChh-hHHHHHHHHHhhcCCCceeeecCCC
Q 008576 221 -Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 221 -~-~~l~~aDlVieav~e~~~-~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+ +.+++||+||-|++-.-- ++.+ .++++++++.....
T Consensus 119 ~l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~ 158 (197)
T cd01079 119 MTLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASI 158 (197)
T ss_pred HHHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCC
Confidence 2 347899999999974332 3333 46789988765443
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.022 Score=57.01 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999997 78888865
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.082 Score=52.36 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=34.7
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 357888876 68999999999999999999999987766544
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.075 Score=48.40 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=46.4
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||-+ ..|.+++..|.++|..|++++.....++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 699999996 5899999999999999999876543222 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||-|+.-.--++ ...++++++++....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGI 109 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--C
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCC
Confidence 999999996433232 235688888875443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.06 Score=52.98 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFA 43 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46888887 89999999999999999999999987765533
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.11 Score=50.02 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
++|+|.|.|++|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 699999999999999999999988 567789876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.06 Score=52.64 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=33.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++.+..+..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERV 45 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence 57888877 9999999999999999999999998766543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.073 Score=52.27 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|..++..|++.|+.|++.+++.+.++...
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAK 42 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36777776 78999999999999999999999987765543
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.055 Score=62.26 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=29.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||+|||+|..|+.++..|+..|. +++++|-|.
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 788888764
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.25 Score=53.08 Aligned_cols=34 Identities=26% Similarity=0.172 Sum_probs=31.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
++|.|+|+|.+|.++|..|++.|++|+++|.+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 5899999999999999999999999999998754
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.077 Score=53.69 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~ 50 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALA 50 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57788876 89999999999999999999999988766543
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.086 Score=51.77 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~ 51 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVA 51 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 46777776 899999999999999999999999887665443
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1 Score=45.20 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=29.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~ 186 (561)
=++|+|+|+|.+| ++|..++++ |++|+++|.+...-+++
T Consensus 182 G~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 182 GKWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEA 221 (360)
T ss_pred CcEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHH
Confidence 3689999998866 566666666 99999999987554443
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.11 Score=50.33 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=34.5
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.++|.|.|+ |.+|..++..|+++|++|++++++++..+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~ 44 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEA 44 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHH
Confidence 368999987 999999999999999999999999876654
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.037 Score=62.36 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~ 180 (561)
.||+|||+| +|+.+|..|+..|. +++++|.|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 589999999 89999999999995 899999764
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.088 Score=51.64 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=35.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888877 89999999999999999999999988766544
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.058 Score=55.50 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=29.8
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
.|+|||+|..|.++|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999987
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.56 Score=50.69 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=32.2
Q ss_pred cceEEEEEcCccchHH-HHHHHHhCCCcEEEEeCCHH
Q 008576 146 RVKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK 181 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~ 181 (561)
+.++|.|||.|..|.+ +|..|.+.|++|+++|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3468999999999999 79999999999999998754
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.093 Score=50.90 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
+++.|.|+ +.+|.++|..|++.|++|++.+++++.+++..+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 48 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQ 48 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 46777777 5699999999999999999999999887765543
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.08 Score=52.71 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=34.0
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.++|.|.|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~ 42 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED 42 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 357888886 899999999999999999999999877654
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.12 Score=51.32 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=28.6
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+.+.|.|++ .+|.++|..|++.|+.|++.+++.
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~ 42 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 42 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch
Confidence 457777986 699999999999999999999873
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.12 Score=54.40 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.1
Q ss_pred cceEEEEE----cC-ccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 146 ~~~kV~VI----G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
..+||.|+ |+ |.+|..++..|++.||+|++++++.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34789999 76 999999999999999999999998764
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.099 Score=51.37 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=35.1
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-++|.|.|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 467888877 89999999999999999999999987765543
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.1 Score=51.90 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++++++++..+...
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 68889987 89999999999999999999999987765433
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.095 Score=51.59 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.|++.+..+...
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 43 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVA 43 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 35777776 89999999999999999999999987665543
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.11 Score=51.25 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAA 53 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888876 99999999999999999999999987766544
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.14 Score=53.63 Aligned_cols=102 Identities=18% Similarity=0.295 Sum_probs=60.0
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
..+||+|||+ |..|..+...|..+ .++|+.+..+.+.-+. +....... ..+.. ..+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~----i~~~~~~l-~~~~~---------~~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS----FGSVFPHL-ITQDL---------PNLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC----chhhCccc-cCccc---------ccee-cCCHHH
Confidence 4569999999 99999999999998 7799988765433111 00000000 00000 0000 011123
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
++++|+||.|+|.. .-.++...+ ..++.|+++++..-..
T Consensus 102 ~~~~DvVf~Alp~~--~s~~i~~~~----~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 102 FSDVDAVFCCLPHG--TTQEIIKAL----PKDLKIVDLSADFRLR 140 (381)
T ss_pred hcCCCEEEEcCCHH--HHHHHHHHH----hCCCEEEEcCchhccC
Confidence 67899999999853 333444433 4578888888765443
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.065 Score=56.43 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=33.5
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+...+|+|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3457999999999999999999999999999998764
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.13 Score=49.70 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=34.2
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
|+.|.|+ |.+|.+++..|++.|++|++.+++.+.++...
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6888877 89999999999999999999999988766543
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.17 Score=50.35 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=53.2
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||-+ ..|..+|..|...|..|+++..+...+.+ .+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~-------------------------------------~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKA-------------------------------------ELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHH-------------------------------------HHhh
Confidence 699999998 88999999999999999999876543322 3578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||-|++-..-++. ..++++++|+...
T Consensus 196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVg 224 (279)
T PRK14178 196 ADILVSAAGKAGFITP-------DMVKPGATVIDVG 224 (279)
T ss_pred CCEEEECCCcccccCH-------HHcCCCcEEEEee
Confidence 9999999963222222 2358899887644
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.078 Score=40.87 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=26.6
Q ss_pred EEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 152 ILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
|||+|.-|...|..|++.|++|+++|.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999775
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 561 | ||||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 0.0 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 8e-71 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 2e-68 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 3e-68 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 3e-68 | ||
| 1zcj_A | 463 | Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas | 4e-59 | ||
| 3k6j_A | 460 | Crystal Structure Of The Dehydrogenase Part Of Mult | 6e-54 | ||
| 3mog_A | 483 | Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge | 6e-45 | ||
| 1f12_A | 310 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- | 1e-38 | ||
| 1f0y_A | 302 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac | 2e-38 | ||
| 1lso_A | 302 | Crystal Structure Of The S137a Mutant Of L-3-Hydrox | 4e-38 | ||
| 1lsj_A | 302 | Crystal Structure Of The E110q Mutant Of L-3-hydrox | 4e-38 | ||
| 1il0_A | 302 | X-Ray Crystal Structure Of The E170q Mutant Of Huma | 4e-38 | ||
| 3had_A | 308 | Biochemical Characterization And Structure Determin | 5e-38 | ||
| 3hdh_A | 302 | Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge | 6e-38 | ||
| 1m75_A | 302 | Crystal Structure Of The N208s Mutant Of L-3-Hydrox | 7e-38 | ||
| 1m76_A | 302 | Crystal Structure Of The S137c Mutant Of L-3-Hydrox | 7e-38 | ||
| 3rqs_A | 324 | Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh | 2e-29 | ||
| 2hdh_A | 293 | Biochemical Characterization And Structure Determin | 3e-28 | ||
| 1zej_A | 293 | Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog | 5e-21 | ||
| 4dyd_A | 283 | Substrate-Directed Dual Catalysis Of Dicarbonyl Com | 1e-17 | ||
| 3f3s_A | 313 | The Crystal Structure Of Human Lambda-Crystallin, C | 8e-13 | ||
| 3ado_A | 319 | Crystal Structure Of The Rabbit L-Gulonate 3-Dehydr | 2e-11 |
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463 | Back alignment and structure |
|
| >pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460 | Back alignment and structure |
|
| >pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483 | Back alignment and structure |
|
| >pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310 | Back alignment and structure |
|
| >pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302 | Back alignment and structure |
|
| >pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302 | Back alignment and structure |
|
| >pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308 | Back alignment and structure |
|
| >pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302 | Back alignment and structure |
|
| >pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324 | Back alignment and structure |
|
| >pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293 | Back alignment and structure |
|
| >pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293 | Back alignment and structure |
|
| >pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283 | Back alignment and structure |
|
| >pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313 | Back alignment and structure |
|
| >pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase Length = 319 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 561 | |||
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 0.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 0.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 0.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 0.0 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 0.0 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 2e-95 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 2e-26 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 2e-84 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 5e-75 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 7e-04 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 3e-68 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 2e-11 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 2e-10 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-07 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 6e-07 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 1e-06 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 1e-06 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 2e-06 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 2e-06 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 3e-06 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 3e-06 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 3e-06 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 4e-06 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 4e-06 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 4e-06 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 4e-06 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 7e-06 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 8e-06 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 8e-06 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 9e-06 | |
| 3t3w_A | 279 | Probable enoyl-COA hydratase; ssgcid, structural g | 1e-05 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 1e-05 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 1e-05 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 1e-05 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 1e-05 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 1e-05 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 1e-05 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 1e-05 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 1e-05 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 1e-05 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 1e-05 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 1e-05 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 1e-05 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 1e-05 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 2e-05 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 2e-05 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 2e-05 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 2e-05 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 3e-05 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 3e-05 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 3e-05 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 3e-05 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 3e-05 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 3e-05 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 4e-05 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 4e-05 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 5e-05 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 5e-05 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 6e-05 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 6e-05 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 8e-05 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 1e-04 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 1e-04 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 1e-04 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 1e-04 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 1e-04 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 2e-04 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 2e-04 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 2e-04 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 2e-04 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 4e-04 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 4e-04 |
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 717 bits (1853), Expect = 0.0
Identities = 441/549 (80%), Positives = 496/549 (90%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+ R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI FA+AQ K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T K
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEKDI+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA +MGMGFPPYRGGIMFWADS+GSKYIYSRL+EWS YGEFFKPCAFLA
Sbjct: 646 GIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLA 705
Query: 541 ERAGKGATL 549
ER KG L
Sbjct: 706 ERGSKGVLL 714
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 662 bits (1709), Expect = 0.0
Identities = 174/555 (31%), Positives = 272/555 (49%), Gaps = 16/555 (2%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
+ + K + E+A + VDAVV ++L + A + + A + K+E L
Sbjct: 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA--KRQPKLEKLK 224
Query: 61 ----EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS 115
E F+ A+ QA PN P+ I ++ G L+ EA F KL ++
Sbjct: 225 LNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT 284
Query: 116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
L+ +F + K V D + VK+ A+LG G+MG GIA P+++
Sbjct: 285 SASNCLIGLFLNDQELKKKAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILM 342
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++NE +E G+ L RV KG+MT K + ++ + L Y F +VD+V+EA++
Sbjct: 343 KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVV 402
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
EN +KQ + A++E + ILASNTSTI ++L+ + + VG HFF+P H+MPL+
Sbjct: 403 ENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLV 462
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E++R ++S + + KK+ K PIVV +C GF VNR+ FPY LV G D
Sbjct: 463 EVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFV 522
Query: 356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYK--SMIIPIMQEDKRAG 413
ID+ + KFG PMGP L D+VG E FP+R I + E KR G
Sbjct: 523 RIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLG 582
Query: 414 ETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473
+ KGFY Y+ +K V + + ++++DI+ + P+ E
Sbjct: 583 QKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYEQ----RDVTDEDIINWMMIPLCLE 638
Query: 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF 533
R +GI AA+ D+ V G+GFP +RGG + + DS+G + ++++ G +
Sbjct: 639 TVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAE-LGALY 697
Query: 534 KPCAFLAERAGKGAT 548
P A L E A G +
Sbjct: 698 HPTAKLREMAKNGQS 712
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 655 bits (1693), Expect = 0.0
Identities = 166/569 (29%), Positives = 282/569 (49%), Gaps = 33/569 (5%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL---VSTARQWALDILEHRRPWVATLYKTDKIE 57
++ + K + +EA LG++DAVV + + + A++ +E RR + +
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIF------NKPVP 223
Query: 58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
L +F A A+ RKQ P + P C+ ++A V G+++E + F L S
Sbjct: 224 SLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQ 283
Query: 118 CKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVI 174
K+L + FFA++ +K G + + + V V +LG G MG GIA + V+
Sbjct: 284 AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 343
Query: 175 LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
E + K L+A + L+ + + L + VD+V+EA+
Sbjct: 344 AVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAV 401
Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
E+++LK+++FA+L C P L +NTS ++++ I T ++G HFFSPAHVM L
Sbjct: 402 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 461
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
LE++ + +SP I ++ + KKI K +VVGNC GF NRM PY F L+E G+
Sbjct: 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 521
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVA-------IATGMQFIENFPER----TYKSMII 403
+D + +FG MGPFR++DL G V TG P R + S +
Sbjct: 522 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 581
Query: 404 PIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKD 461
++ E R G+ T KG+Y YD+ R PDP + F+ + R + + +S+++
Sbjct: 582 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEE 637
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSR 521
I+E + ++NEA R+ EG+A + +D+ + G G+P ++GG MF+A S+G + +
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 697
Query: 522 LEEWSSLYGE--FFKPCAFLAERAGKGAT 548
L+++ + +P +L +G+
Sbjct: 698 LQKYYRQNPDIPQLEPSDYLRRLVAQGSP 726
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463 | Back alignment and structure |
|---|
Score = 559 bits (1443), Expect = 0.0
Identities = 137/452 (30%), Positives = 228/452 (50%), Gaps = 24/452 (5%)
Query: 115 SETCKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY 171
S K+L + FFA++ +K G + + + V V +LG G MG GIA +
Sbjct: 2 SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61
Query: 172 PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVI 231
V+ E + K L+A + L+ + + L + VD+V+
Sbjct: 62 SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVV 119
Query: 232 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291
EA+ E+++LK+++FA+L C P L +NTS ++++ I T ++G HFFSPAHV
Sbjct: 120 EAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHV 179
Query: 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERG 351
M LLE++ + +SP I ++ + KKI K +VVGNC GF NRM PY F L+E G
Sbjct: 180 MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEG 239
Query: 352 TDLYLIDRAITKFGMPMGPFRLADLVGFGVA-------IATGMQFIENFPER----TYKS 400
+ +D + +FG MGPFR++DL G V TG P R + S
Sbjct: 240 SKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYS 299
Query: 401 MIIPIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFAKLS 458
+ ++ E R G+ T KG+Y YD+ R PDP + F+ + R + + +S
Sbjct: 300 PLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTIS 355
Query: 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYI 518
+++I+E + ++NEA R+ EG+A + +D+ + G G+P ++GG MF+A S+G +
Sbjct: 356 KEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTV 415
Query: 519 YSRLEEWSSLYGEF--FKPCAFLAERAGKGAT 548
+L+++ + +P +L +G+
Sbjct: 416 LEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSP 447
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460 | Back alignment and structure |
|---|
Score = 531 bits (1371), Expect = 0.0
Identities = 127/456 (27%), Positives = 209/456 (45%), Gaps = 21/456 (4%)
Query: 101 GLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGL----APRRVKKVAILGGG 156
+ L + + ++ A + D G V VAI+GGG
Sbjct: 4 HHHHHHHSTGENLYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGG 63
Query: 157 LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216
MG +A L+ L NE+ + + + ++ ++ EK + L
Sbjct: 64 TMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM---YAREKSFKRLNDKRIEKINANLK 120
Query: 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS 276
D+ + D+++E++IE++ LK+++FA+LE C CI +NTS++DLN I
Sbjct: 121 ITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRD 180
Query: 277 KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336
+VG HFF+PA+V+ L+EI+ + TS Q I + IKK P++VGNC F NR+
Sbjct: 181 PSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRL 240
Query: 337 FFPYT-QAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE 395
Y Q+ L+ E G + ID+ IT FG MGP +AD+ GF V +
Sbjct: 241 LHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKEN------ 294
Query: 396 RTYKSMIIPIMQEDKRAGETTRKGFYLYDE-RRKASPDPEVKKFIEKARSMSGVAIDPKF 454
+ I M KR G T KGFY YD+ ++ D E+++ I + + I
Sbjct: 295 GLEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQI-- 352
Query: 455 AKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLG 514
++++D++ + +P VNE R EG+ + +DI ++G G+P + GG M + + G
Sbjct: 353 --INDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEG 410
Query: 515 SKYIYSRLEEWSSLYGEF--FKPCAFLAERAGKGAT 548
I + L WSSL + + L +
Sbjct: 411 LDKIANMLVHWSSLEPKESAYIVADALKTANVSTGS 446
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 2e-95
Identities = 132/475 (27%), Positives = 208/475 (43%), Gaps = 82/475 (17%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
V+ VA++G G MG+GIA + V+L +++ + L I + A L SRV +GK+T E
Sbjct: 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
E+T+ L V D + D+VIEA E + +K+ +FA L + CPP +L +NTS+I
Sbjct: 65 TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ I + +R+ G HFF+PA VM L+E+V T+ +V+ L ++ K P+
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGV-- 381
+ GF VNR+ PY ++A L E+ +ID A+ + G PMGP L DL+G V
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAAL-RDGAGFPMGPLELTDLIGQDVNF 243
Query: 382 AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRK------ASPD 432
A+ + F + ER + + QE G +K G Y + R+ A D
Sbjct: 244 AVTCSV-FNAFWQERRFLPS--LVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSD 300
Query: 433 PEVKKFIEKA-----------------RSMSGVA---------IDPKFAKLSE------- 459
+EK + +A ID K+
Sbjct: 301 SFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVN 360
Query: 460 ----------------------KD----IVEMIFFPVVNEACRVFAEGIAVKAADLDIAS 493
D ++ ++NEA +G+A D+D A
Sbjct: 361 PDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALDALQKGVA-SEQDIDTAM 419
Query: 494 VMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF-FKPCAFLAERAGKGA 547
+G+ +P G + W LG + I LE YGE ++PC+ L +RA +
Sbjct: 420 RLGVNYPY---GPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLES 471
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 29/218 (13%), Positives = 74/218 (33%), Gaps = 26/218 (11%)
Query: 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS 276
GV D+ + ++ + +EA+ + ++ + +L T + R
Sbjct: 281 GVYDWRAEREAVVGLEAV-SDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLAR 339
Query: 277 KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336
++ ++ I + ++ KT + + + G + R
Sbjct: 340 PVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRT 393
Query: 337 FFPYTQAAFLLVERGT----DLYLIDRAITKFGM--PMGPFRLADLVGFGV--AIATGMQ 388
A +++G D ID A+ + G+ P GP +G+ + +Q
Sbjct: 394 VAMIINEALDALQKGVASEQD---IDTAM-RLGVNYPYGPLAWGAQLGWQRILRLLENLQ 449
Query: 389 FIENFPERTYKSMIIPIMQEDK--RAGETTRKGFYLYD 424
++ E Y+ ++++ +G + G + +
Sbjct: 450 --HHYGEERYRPC--SLLRQRALLESGYESE-GHHHHH 482
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 2e-84
Identities = 100/295 (33%), Positives = 144/295 (48%), Gaps = 18/295 (6%)
Query: 143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70
Query: 202 ----KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC 256
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H
Sbjct: 71 AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130
Query: 257 ILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316
I ASNTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190
Query: 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGM--PMGPFRL 373
+ K P+ + GF VNR+ PY A L ERG ID A+ K G PMGPF L
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAM-KLGAGYPMGPFEL 249
Query: 374 ADLVGFGV--AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
D VG I G + ++ P + + + +K GFY Y
Sbjct: 250 LDYVGLDTTKFIVDGW-HEMDAENPLHQP--SPSLNKLVAENKFGKKTGEGFYKY 301
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 5e-75
Identities = 85/311 (27%), Positives = 138/311 (44%), Gaps = 31/311 (9%)
Query: 138 TDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR 197
+D KV ++G GLMG GIA A+ S + V+L++V+EK LEA ++ L S+
Sbjct: 3 SDKIHHHHHHMKVFVIGAGLMGRGIAIAI-ASKHEVVLQDVSEKALEAAREQIPEELLSK 61
Query: 198 VKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCI 257
+ E KD D+V+EA+ E+++ K ++ ++E+ +
Sbjct: 62 -----------------IEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102
Query: 258 LASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317
L SNTS I ++ I ER S R +G H+ +P HVMPL+EIV + T + + + ++
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162
Query: 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAI-TKFGM---PMGPFRL 373
+ K +V VNR A ++E G +DR G+ GP
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220
Query: 374 ADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKAS 430
D +G VA + + F + +K +QE + GE K G Y Y +
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKP--PEWLQEKIKKGEVGVKAGKGIYEYGPKAYEE 278
Query: 431 PDPEVKKFIEK 441
+KK +
Sbjct: 279 RVERLKKLLRF 289
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSR 521
+V V++EA R+ EG+ + D +G+ + + G + D +G Y
Sbjct: 175 LVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLF--GPLGNLDYIGLDVAYYA 232
Query: 522 LEEWSSLYGEF----FKPCAFLAE--RAGK 545
LY F FKP +L E + G+
Sbjct: 233 SL---YLYKRFGDEKFKPPEWLQEKIKKGE 259
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 12/151 (7%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA-------TLYKT 53
+ V+GE A + LVD VV PNQ + AL++ + +T
Sbjct: 198 FCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERT 257
Query: 54 DKIEPLGEAREIFKFAR----AQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDF 109
D+ + L R A +AP P +V AG P +E +D
Sbjct: 258 DREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWP-LKFAREFDDA 316
Query: 110 QKLLRSETCKSLVHIFFAQRGTSKVPGVTDL 140
+R+ +F + +
Sbjct: 317 ILSMRTNELAVGTWVFRTEGDARHLLAADAS 347
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-10
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 19/114 (16%)
Query: 315 GKKIKKTPIVVGNCTGFAVN--RMFFPYTQAAFLLVERGT----DLYLIDRAITKFGM-- 366
G + P + + +N F A LVE G D ID AI K G+
Sbjct: 1 GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQD---IDTAI-KLGLNR 55
Query: 367 PMGPFRLADLVGFGV--AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK 418
P GPF LA G + + F ++ ++ ++E K
Sbjct: 56 PFGPFELAKQFGAEQIAKRLEELA--KQFGKKIFEP--AKTLKEGKLEELLKAG 105
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSR 521
F +NEA ++ G+A D+D A +G+ P G A G++ I R
Sbjct: 19 NPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKR 74
Query: 522 LEEWSSLYGE-FFKPCAFLAE--RAGKG 546
LEE + +G+ F+P L E
Sbjct: 75 LEELAKQFGKKIFEPAKTLKEGKLEELL 102
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 79/606 (13%), Positives = 168/606 (27%), Gaps = 220/606 (36%)
Query: 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLV--------STARQWALDILEHRRPWVATLYKT 53
+L+ + + H + DAV +L +++ ++L ++ + KT
Sbjct: 45 ILSKEEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 54 DKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL 113
++ +P ++ + R + N +V R + ++ L
Sbjct: 101 EQRQPSMM-TRMY----IEQRDRLYNDNQVFAKYNV--------SR---LQPYLKLRQAL 144
Query: 114 RSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSG--IATALILSNY 171
L R K V I G GSG + +Y
Sbjct: 145 -----LEL-----------------------RPAKNVLIDGVL--GSGKTWVALDVCLSY 174
Query: 172 PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVI 231
V Q K + I L K+ +
Sbjct: 175 KV-------------------------------QCKMDFKIFWLN-------LKNCN-SP 195
Query: 232 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291
E ++E + Q++ ++ P + ++S I L + + + S +
Sbjct: 196 ETVLEML---QKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR-----LLKSKPYE 244
Query: 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERG 351
LL ++ N + + + ++ KI ++ T F FL
Sbjct: 245 NCLL-VLL-NVQNAKAW-NAFNLSCKI----LLT---TRFKQV--------TDFLSAATT 286
Query: 352 TDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYK------SMIIPI 405
T + L + M + P + L + + ++ P S+I
Sbjct: 287 THISLDHHS-----MTLTPDEVKSL----LLKYLDCR-PQDLPREVLTTNPRRLSII--- 333
Query: 406 MQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEM 465
E+ R G +D + + D ++ IE + L + +M
Sbjct: 334 -------AESIRDGLATWDNWKHVNCD-KLTTIIESS-----------LNVLEPAEYRKM 374
Query: 466 IFFPVVNEACRVFAEGIAVKAADLDI-ASVMGMGFPPYRGGIMFWADS--------LGSK 516
F + VF I ++ + W D +
Sbjct: 375 -F-----DRLSVFPP-------SAHIPTILLS----------LIWFDVIKSDVMVVVNKL 411
Query: 517 YIYSRLEEWS-----SLYGEFFKPCAFLAERAGKGATLVRNLKL---------------- 555
+ YS +E+ S+ + + L ++V + +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 556 -FFSYL 560
F+S++
Sbjct: 472 YFYSHI 477
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 60/440 (13%), Positives = 121/440 (27%), Gaps = 147/440 (33%)
Query: 58 PLGEAREIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
+ + + R K N L +V ++V A A +
Sbjct: 226 RIHSIQA--ELRRLLKSKPYENCL---LVLLNVQNAKAW---------NAFNLS------ 265
Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAI--LGGGLMGSGIATALILSNY--- 171
CK L+ T++ VTD L+ +++ L +L Y
Sbjct: 266 -CKILL--------TTRFKQVTDF-LSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDC 313
Query: 172 -----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ-EKFEKTISLLTGVLD----- 220
P + N + I + + K +K I VL+
Sbjct: 314 RPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 221 --YESF----KDVD---MVIE----AIIENVSLKQQIFADLEKYCPPHCILA-----SNT 262
++ +++ +I++ + L KY L +T
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYS-----LVEKQPKEST 425
Query: 263 STI-DL----------------NLIGE----RTYSKDRIVGAH----FFSPAHV---MPL 294
+I + +++ +T+ D ++ + F+S H+ +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HIGHHLKN 483
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
+E V +D + +KI+ N +G +N L L
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-NASGSILN-----------TL----QQL 527
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKS-----MIIPIMQED 409
I P + + + F+ E S + I +M ED
Sbjct: 528 KFYKPYICD-NDPKYERLVNAI----------LDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 410 KRAGETTRKGFYLYDERRKA 429
+ +++E K
Sbjct: 577 E----------AIFEEAHKQ 586
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+K GE A + G +D + P ++S A + A +
Sbjct: 159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGL 200
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ ++ E A + G +D VV+ +L A A + +
Sbjct: 159 SVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKI 200
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ EA +G+VD VV Q+ STA +
Sbjct: 163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI 204
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
M +T + + +EA +GLV+ V + R++A +
Sbjct: 166 MNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANS 207
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
++LT + A GL + + +++ A + A DI + P
Sbjct: 162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAP 206
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
MMLTS P+ G EA GLV+ V A + + A I
Sbjct: 162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGK 203
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ + + EEA +LGL+D +VAP+ + +A WA LE
Sbjct: 179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLEC 220
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
++L+ + EEA LGLV VV P QL+ A ++A DI + P
Sbjct: 194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSP 238
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++T K G++A +GLV+ V QL + A ++LE
Sbjct: 170 YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEK 211
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA 36
+ML E+ +GLVD VV Q V+ Q
Sbjct: 204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI 239
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M+ T + +G+E G+ VV+ +++ A+Q I
Sbjct: 154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKI 192
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 4e-06
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ T + + +EA GLV+ VV + L A + A I +
Sbjct: 166 LIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASN 207
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 7e-06
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ T + +EA LG+V+ VV+P L+ + A + E
Sbjct: 159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQ 200
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++L + + +E + LVD VV P++L + + +
Sbjct: 347 VILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDGD 388
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 8e-06
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
MMLT + E G ++ A + + ++
Sbjct: 170 MMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+LTS + A G V+ V +L A +
Sbjct: 168 AVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGF 209
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ T + + EE G+V+ VV ++L + R A +I +
Sbjct: 179 ILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKM 220
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ +++ +EA +G V A Q + A
Sbjct: 159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATAL 200
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ + E+ H +G V+AV +L + QWA +I
Sbjct: 232 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK 273
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT + + EA GLV VV + L++ AR A I +
Sbjct: 179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQM 220
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+ T + + ++A+ L +V V+ ++L+ A + A +
Sbjct: 181 FLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTL 219
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT+ E A S G ++ + ++L + A +I
Sbjct: 171 VVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAAL 212
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT +PV EA +GLV+ VVA Q A A +I
Sbjct: 165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAF 206
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+MLT + V +EA +GLV VA L+ I
Sbjct: 188 IMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGF 229
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT +P+ A GL++ VV ++ A A I +
Sbjct: 165 LLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVN 206
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ LT + E+A G ++ +V Q + TA + A I +
Sbjct: 157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITAN 198
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
M+LT + ++A GLV + LV A Q A I + + VA
Sbjct: 161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA 208
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ LT + + EEA +GLV +V L+ A A I
Sbjct: 164 LCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARM 205
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 36/116 (31%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MLT+ EAH +G+V +V + V TA A I V
Sbjct: 166 WMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGV------------- 212
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
QA + V G A ++ ++L SE
Sbjct: 213 -----------QATLRN------------ARLAVREGDAAAEEQLVPTVRELFTSE 245
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ + +EA +GLV+ VV ++ QW +I++H
Sbjct: 171 IWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH 212
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ + + LV+ VV + L+ A A + +
Sbjct: 157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASY 198
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
M LT + ++A GLV VVA + L++ AR+ A I+ +
Sbjct: 156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGN 197
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ + +EA +G+V+ VV ++L QWA +IL
Sbjct: 173 IWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSK 214
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ LT + E AH+LG+V+ + P + A A I +
Sbjct: 166 LALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITAN 207
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+LT +EA + L+ VV P + ++ A ++A I
Sbjct: 169 YILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERI 207
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT + + EA +GLV VV Q ++ A + A I +
Sbjct: 179 LLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAAN 220
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ + ++A +GLV+ VV L +W ++L++
Sbjct: 187 IWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQN 228
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ T+ P+ + A ++G+++ VV +L Q A I E
Sbjct: 160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+LT + + GEEA +GLV V ++++ TA + A ++
Sbjct: 171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENL 209
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-05
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT + V+ EA +LGLV+ + P + + A+ A ++ ++
Sbjct: 157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKN 198
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+LT + + A G V+ V++ +L+ A + A I
Sbjct: 172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGI 210
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M++ K + EA + GLV V +
Sbjct: 185 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAF 223
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+L ++P+ GEEA LGLV V ++ A + A +
Sbjct: 168 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL 206
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 5e-05
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
M+LT +P+ EA+ GLV VV + AR A I+ +
Sbjct: 166 MILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRN 207
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++++S+ + EEA +GLV + +P +L+ AR+ A +
Sbjct: 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEIL 201
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++ T + G +A GL P L + + I
Sbjct: 218 LLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERI 256
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
+ ++++ A+SL LV V + L+ ++A I
Sbjct: 162 LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISN 202
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M LT + A + GL++ ++ L + A +
Sbjct: 167 MALTGATYDADWALAAGLINRILPEAALATHVADLAGAL 205
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M+L+ + + +EA GLV V P ++
Sbjct: 165 MLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKEL 203
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+ + + V EEA +LGL V+ + +Q+A +
Sbjct: 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERL 196
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
+++ V+ EA +GL+ + + AR A + + P +A
Sbjct: 178 LLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLAD--GPALA 223
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M++ + + EA + GLV V ++
Sbjct: 183 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++ +++ + G+EA ++GL+ V+ NQ A + ALD+
Sbjct: 169 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDL 207
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA 36
M +T++ + A G++ + + ++ S
Sbjct: 156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVL 191
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 1 MMLT--SKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
M L + + + A+ LGL+ +V ++L+ A + A + +
Sbjct: 173 MALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSN 216
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
M++T + V ++A LGLV+ VVAP L I+ R VA
Sbjct: 182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA 229
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+MLT++ + EEA GLV V ++ A + A ++
Sbjct: 164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVAREL 202
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 561 | |||
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 100.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 100.0 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 100.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 100.0 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 100.0 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 100.0 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 100.0 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 100.0 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 99.9 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.9 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 99.85 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.83 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.79 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.76 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.76 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.75 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.72 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.72 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.69 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.68 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.67 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.64 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.64 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.64 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.63 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.63 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.63 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.62 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.61 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.6 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.6 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.59 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.58 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.58 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.58 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.57 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.57 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.56 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.55 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.55 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.54 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.53 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.52 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 99.52 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 99.51 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.51 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.5 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.5 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.5 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 99.5 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.5 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.49 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.49 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.48 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.48 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.47 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.47 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.46 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.46 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 99.46 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 99.46 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.45 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.45 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 99.45 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.45 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 99.45 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.45 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.44 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 99.44 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.44 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 99.44 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 99.43 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 99.43 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 99.43 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 99.43 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.43 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 99.42 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 99.42 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 99.42 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.42 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 99.41 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 99.41 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 99.4 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 99.4 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.39 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 99.39 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 99.39 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.38 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 99.38 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.38 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 99.38 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.38 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 99.37 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.37 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 99.36 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.36 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.36 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 99.36 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 99.36 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 99.36 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 99.35 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 99.34 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 99.34 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 99.33 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.33 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 99.33 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 99.32 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.32 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 99.32 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 99.32 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 99.32 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 99.32 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.31 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 99.31 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 99.3 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 99.3 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 99.3 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.29 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 99.29 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 99.28 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.28 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 99.27 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.26 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.26 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 99.26 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 99.26 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 99.25 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 99.24 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 99.24 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 99.24 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 99.23 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.23 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 99.22 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.22 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 99.22 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 99.21 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.21 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 99.2 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 99.19 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 99.19 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 99.19 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.16 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.16 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 99.15 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.15 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 99.15 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 99.14 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.14 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.12 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.11 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.11 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 99.11 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 99.08 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.05 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.05 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 99.04 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.03 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 99.03 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 99.03 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 98.99 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.98 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.97 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.96 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.49 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.93 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 98.92 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 98.91 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 98.91 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.86 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.86 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.85 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.83 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.81 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.8 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.76 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 98.76 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 98.75 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.74 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.74 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.73 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.73 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.73 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.72 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.72 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 98.7 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.67 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 98.66 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.66 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.65 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.64 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.64 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.62 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.55 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 98.54 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.53 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.52 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.52 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.49 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.48 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.46 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 98.44 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.42 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.41 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.4 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.39 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.33 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.31 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.3 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.3 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.29 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.28 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.27 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.27 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.26 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.26 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.26 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.25 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.24 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.22 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.21 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.21 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.2 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.18 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.17 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.17 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.15 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.15 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.14 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.13 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.13 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.12 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.12 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.11 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.11 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.09 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.06 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.02 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.01 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.0 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.97 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.94 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 97.91 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.89 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.85 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.85 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.84 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.83 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.83 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.83 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.79 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.77 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.73 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.72 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.71 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.68 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.65 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.65 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.64 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.64 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.63 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.61 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.58 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.53 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 97.47 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.44 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.42 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.38 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.38 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.37 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.37 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.34 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.33 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.33 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.32 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.32 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.32 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.31 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.31 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.29 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.28 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.27 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.25 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.24 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.22 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.21 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.2 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.2 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.19 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.18 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.18 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.17 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.16 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.13 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 97.13 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.12 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.12 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.12 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.12 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.11 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.1 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 97.1 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.1 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.05 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.05 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.03 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.03 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.03 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.02 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.01 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.97 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 96.97 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.96 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.94 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.94 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.93 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.91 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.89 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.85 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.85 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.84 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.82 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 96.82 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.79 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.78 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.76 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.76 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.71 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.71 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.69 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.64 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.63 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.62 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.6 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.6 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.59 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 96.58 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.57 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.57 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.56 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.56 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.55 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.54 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.54 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.52 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.49 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.49 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.47 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.45 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.43 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.4 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.37 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.28 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.28 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.26 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.26 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.22 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.2 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 96.17 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.07 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 96.06 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.05 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.05 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.96 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 95.92 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.89 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.85 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.83 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 95.83 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 95.83 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.81 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.8 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 95.8 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.8 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.77 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 95.73 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.72 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.72 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.68 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.67 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 95.66 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.65 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.64 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.64 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 95.63 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.61 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.6 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.59 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 95.55 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.55 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.54 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 95.51 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.51 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.5 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.44 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 95.43 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.43 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.43 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 95.43 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 95.41 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 95.41 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 95.4 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 95.39 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.38 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.37 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.36 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 95.36 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 95.36 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 95.36 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.36 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.34 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.34 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 95.33 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 95.33 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.32 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.32 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.32 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 95.31 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 95.3 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 95.3 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.29 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.29 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 95.28 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 95.28 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 95.27 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 95.27 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 95.25 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 95.25 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.24 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 95.23 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.22 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 95.2 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 95.2 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 95.17 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 95.16 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 95.14 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 95.14 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 95.13 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.12 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.12 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 95.11 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.11 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 95.09 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 95.06 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 95.06 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 95.05 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 95.05 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 95.04 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 95.01 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 95.01 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 95.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 95.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.98 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 94.98 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 94.98 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 94.98 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 94.97 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 94.96 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 94.95 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.95 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 94.93 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.92 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.92 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 94.91 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 94.91 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.91 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 94.9 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 94.88 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 94.88 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 94.86 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 94.86 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 94.85 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.84 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 94.84 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.8 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 94.79 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 94.76 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 94.74 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 94.69 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 94.66 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.65 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.61 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.61 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 94.59 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 94.55 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 94.55 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 94.54 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 94.52 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 94.49 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 94.49 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 94.47 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 94.47 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 94.46 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 94.46 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 94.44 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 94.44 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 94.41 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 94.41 |
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-105 Score=885.30 Aligned_cols=551 Identities=30% Similarity=0.503 Sum_probs=491.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|+|++ +++.|.++|++++.+ |+..+................+..+.++++++.+++
T Consensus 170 l~ltG~~i~a~eA~~~GLv~~vv~~d-~~~~A~~~A~~ia~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 246 (742)
T 3zwc_A 170 LITSGKYLSADEALRLGILDAVVKSD-PVEEAIKFAQKIIDK--PIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGV 246 (742)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEESSC-HHHHHHHHHHHHTTS--CSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHHcCCchhHHHHHHcCCccEecCch-hhHHHHHHHHHHhcC--CchhhhhhcccccccchhhhhHHHHHHHHhhhccch
Confidence 58999999999999999999999865 578899999999985 443333222333333333456677788888999999
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCC---CCCCCCcccceEEEEEcCcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGV---TDLGLAPRRVKKVAILGGGL 157 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~---~~~~~~~~~~~kV~VIG~G~ 157 (561)
+|+..++++|+.+...+++++++.|++.|.+|+.|+++++++++|+++|+++|.+.. .+.+..+++|+||+|||+|+
T Consensus 247 ~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~ 326 (742)
T 3zwc_A 247 LAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGT 326 (742)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSH
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccH
Confidence 999999999999999999999999999999999999999999999999999886543 22344567899999999999
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccCC
Q 008576 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~ 237 (561)
||++||..++.+|++|+++|++++.++++.+.+...++..+.++..+.. .....+++.+++++++++||+|||||+|+
T Consensus 327 MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~ 404 (742)
T 3zwc_A 327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFED 404 (742)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSC
T ss_pred HHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEecccc
Confidence 9999999999999999999999999999999999888877776544432 23346788888999999999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (561)
+++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||+++|++||||+++.|++++++.+..+.+.
T Consensus 405 l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~ 484 (742)
T 3zwc_A 405 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKK 484 (742)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC-
Q 008576 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER- 396 (561)
Q Consensus 318 lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~- 396 (561)
+||+||+++|+||||+||++.++++|+++++++|+++++||.+++++|||||||+++|.+|||+.+++++.++...++.
T Consensus 485 lgK~pV~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~ 564 (742)
T 3zwc_A 485 IGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLP 564 (742)
T ss_dssp TTCEEEECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSC
T ss_pred hCCCCcccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876543321
Q ss_pred ----------CcccchHHHHHHCCcCccccCceeeeccCC--CCCCCChhHHHHHHHHhhccCccCCcccccCchHHHHH
Q 008576 397 ----------TYKSMIIPIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVE 464 (561)
Q Consensus 397 ----------~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 464 (561)
..+++++++|+++|++|+|||+|||+|+++ ++..+|+++..++...+......+ ..+++++|.+
T Consensus 565 ~~~~~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ei~~ 640 (742)
T 3zwc_A 565 PGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEEILE 640 (742)
T ss_dssp TTCCTTEETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCC----CCCCHHHHHH
T ss_pred ccchhhhcccccccHHHHHHHHCCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCc----CCCCHHHHHH
Confidence 124679999999999999999999999864 345689999988877665434332 2678899999
Q ss_pred HHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC--CCCccHHHHHH
Q 008576 465 MIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE--FFKPCAFLAER 542 (561)
Q Consensus 465 r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~ 542 (561)
|++.+++||+++|++|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|...+|+ +|+|+|+|++|
T Consensus 641 R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~m 720 (742)
T 3zwc_A 641 RCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRL 720 (742)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 89999999999
Q ss_pred HHcCCCcccCCccccccC
Q 008576 543 AGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 543 ~~~g~~g~~~g~Gfy~y~ 560 (561)
+++|..+.+.++|||.|.
T Consensus 721 a~~G~~~f~~~~~~~~~~ 738 (742)
T 3zwc_A 721 VAQGSPPLKEWQSLAGPH 738 (742)
T ss_dssp HHTTCCCGGGHHHHHSTT
T ss_pred HHcCCCcccccccccCCC
Confidence 999999999999999873
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-95 Score=815.07 Aligned_cols=547 Identities=80% Similarity=1.278 Sum_probs=464.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCch-hhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWV-ATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|+|||++++|+||+++||||+|||+++++++|.++|++++....|+. +.... ............+..+++.+++++++
T Consensus 166 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~g 244 (725)
T 2wtb_A 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKT-DKLPPLGEAREILTFAKAQTLKRAPN 244 (725)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGCC-TTSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhhc-cccCccchHHHHHHHHHHHHHHhccC
Confidence 57999999999999999999999999999999999999987533442 22110 01111122334778899999999988
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcCccch
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMG 159 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~mG 159 (561)
|||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.+.....+..+++|+||+|||+|.||
T Consensus 245 ~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG 324 (725)
T 2wtb_A 245 MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMG 324 (725)
T ss_dssp CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEECCSHHH
T ss_pred CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEEcCCHhh
Confidence 99999999999999999999999999999999999999999999999999999987632113345678999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccCChh
Q 008576 160 SGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (561)
Q Consensus 160 ~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~~~ 239 (561)
++||..|+++|++|++||++++.++.+.+.+++.+++.+++|.+++.+.....++++.+++++.+++||+||+||||+.+
T Consensus 325 ~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaVpe~~~ 404 (725)
T 2wtb_A 325 SGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENIS 404 (725)
T ss_dssp HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEECCCSCHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEEcCcCCHH
Confidence 99999999999999999999999999988898899888888988887778888899988999889999999999999999
Q ss_pred hHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcC
Q 008576 240 LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIK 319 (561)
Q Consensus 240 ~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG 319 (561)
+|+++++++.+++++++||+||||+++++++++.+.+|++++|+|||+|++.++++||++++.|++++++.+.++++.+|
T Consensus 405 vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lG 484 (725)
T 2wtb_A 405 LKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIK 484 (725)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC-Cc
Q 008576 320 KTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER-TY 398 (561)
Q Consensus 320 k~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~-~~ 398 (561)
+.+++++|.+||++||++.++++|++.++++|+++++||.++.++|+|||||+++|.+|||+++++++.+++.++++ +.
T Consensus 485 k~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~ 564 (725)
T 2wtb_A 485 KTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYK 564 (725)
T ss_dssp CEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHSGGGCCC
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999988876 45
Q ss_pred ccchHHHHHHCCcCccccCceeeeccCCCCCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHHHHHHHHH
Q 008576 399 KSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVF 478 (561)
Q Consensus 399 ~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l 478 (561)
| +++++|+++|++|+|||+|||+|++.++..+|+++..|++..+...+..+..+...++.++|.+|++.+++||+++|+
T Consensus 565 ~-~~l~~~v~~g~lG~k~g~GfY~y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l 643 (725)
T 2wtb_A 565 S-MIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVF 643 (725)
T ss_dssp C-THHHHHHTTC---------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHCCCceecCCceeEeCCCCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999996322234777776665543221111101111136788999999999999999999
Q ss_pred hcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCCc
Q 008576 479 AEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 479 ~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 549 (561)
+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.++..+|++|.|+++|++|+++|+.|
T Consensus 644 ~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f 714 (725)
T 2wtb_A 644 AEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLL 714 (725)
T ss_dssp HTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHTCCS
T ss_pred hcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988654
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-95 Score=808.80 Aligned_cols=537 Identities=32% Similarity=0.541 Sum_probs=480.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhccc-CCC-CCchhHHHHHHHHHHHHHhhCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT-DKI-EPLGEAREIFKFARAQARKQAP 78 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~-~~~-~~~~~~~~~~~~a~~~~~~~~~ 78 (561)
|++||++++|+||+++||||+|||+++++++|.++|++++....||..+.... ... .+......+++.+++++.++++
T Consensus 167 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~ 246 (715)
T 1wdk_A 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAG 246 (715)
T ss_dssp HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHHHHHHhcc
Confidence 57999999999999999999999999999999999999988533543332110 010 0111112357778888888765
Q ss_pred -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcCcc
Q 008576 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (561)
Q Consensus 79 -~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~ 157 (561)
+|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++|.+.... + .+++++||+|||+|.
T Consensus 247 g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~VIGaG~ 324 (715)
T 1wdk_A 247 PNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAAVLGAGI 324 (715)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEEEECCHH
T ss_pred cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEEEECCCh
Confidence 5999999999999999899999999999999999999999999999999999988654211 2 346789999999999
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccCC
Q 008576 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~ 237 (561)
||++||..|+++|++|++||++++.++.+...+.+.++..+++|.+++.+....+++++++++++.+++||+||+||||+
T Consensus 325 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaV~e~ 404 (715)
T 1wdk_A 325 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVEN 404 (715)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEEECCCSC
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEEEcCCCC
Confidence 99999999999999999999999999999989999999999999999888888888898888888899999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (561)
.++|+++++++.+++++++||+||||+++++++++.+.+|++++|+|||+|++.++++|++++..|++++++.+.++++.
T Consensus 405 ~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~ 484 (715)
T 1wdk_A 405 PKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKK 484 (715)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCCC
Q 008576 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT 397 (561)
Q Consensus 318 lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~ 397 (561)
+|+.+++++|.+||++||++.++++|++.++++|+++++||.++.++|+|||||+++|.+|||+++++++.+++.+++++
T Consensus 485 lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~ 564 (715)
T 1wdk_A 485 MGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRM 564 (715)
T ss_dssp TTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHH
T ss_pred hCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999998888766
Q ss_pred ccc--chHHHHHHCCcCccccCceeeecc-C--CC-CCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHH
Q 008576 398 YKS--MIIPIMQEDKRAGETTRKGFYLYD-E--RR-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVV 471 (561)
Q Consensus 398 ~~~--~~l~~~v~~G~~G~k~g~GfY~y~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 471 (561)
.|+ +++++|+++|++|+|||+|||+|+ + ++ +..+|+++..|++..+. + ...++.++|.+|++.+++
T Consensus 565 ~~~~~~~l~~~v~~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~i~~r~l~~~~ 636 (715)
T 1wdk_A 565 KDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY--E------QRDVTDEDIINWMMIPLC 636 (715)
T ss_dssp CCSSCCHHHHHHHTTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC--C------CCCCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhCchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc--C------ccCCCHHHHHHHHHHHHH
Confidence 677 899999999999999999999996 3 33 44689998888754321 0 123678899999999999
Q ss_pred HHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCC
Q 008576 472 NEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548 (561)
Q Consensus 472 ~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (561)
||+++|++|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+ ..||++|.|+++|.+|+++|+.
T Consensus 637 nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~l~~~~~~g~~ 712 (715)
T 1wdk_A 637 LETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAKLREMAKNGQS 712 (715)
T ss_dssp HHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999 8899999999999999998764
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-85 Score=688.52 Aligned_cols=418 Identities=30% Similarity=0.474 Sum_probs=367.8
Q ss_pred HHHhhccCCCCCCCCC----CCCCcccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q 008576 124 IFFAQRGTSKVPGVTD----LGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVK 199 (561)
Q Consensus 124 aF~~kr~~~k~~~~~~----~~~~~~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~ 199 (561)
+|..+|..++...+.. ....+++|+||+|||+|.||++||..|+++|++|++||++++ ++.+.+++.++.+++
T Consensus 27 ~~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~ 103 (460)
T 3k6j_A 27 LMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKS 103 (460)
T ss_dssp HHHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHH
T ss_pred HHhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHH
Confidence 4557777766533211 122457889999999999999999999999999999999998 456678888999999
Q ss_pred cCCCCHHHHHhhhccccccccccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccc
Q 008576 200 KGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDR 279 (561)
Q Consensus 200 ~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r 279 (561)
+|.++.++.+..+++++++++++++++||+|||||||++++|+++++++++.+++++||+||||+++++++++.+.+|++
T Consensus 104 ~G~l~~~~~~~~~~~i~~t~dl~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r 183 (460)
T 3k6j_A 104 FKRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSN 183 (460)
T ss_dssp TTSCCHHHHHHHHTTEEEESCGGGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGG
T ss_pred cCCCCHHHHHHHhcceEEeCCHHHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcc
Confidence 99999988888999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHH-HcCCCHHHHH
Q 008576 280 IVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV-ERGTDLYLID 358 (561)
Q Consensus 280 ~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~-~~G~~~~~ID 358 (561)
|+|+|||+|++.++++||+++..|++++++.+.++++.+|+++++++|+|||++||++.++++||+.++ ++|+++++||
T Consensus 184 ~iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID 263 (460)
T 3k6j_A 184 LVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQID 263 (460)
T ss_dssp EEEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred eEEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred HHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCCCcccchHHHHHHCCcCccccCceeeeccCCCC-CCCChhHHH
Q 008576 359 RAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPEVKK 437 (561)
Q Consensus 359 ~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~-~~~~~~~~~ 437 (561)
.+++++|+|||||+++|++|||+++++++.+ . ..+++++++|+++|++|+|||+|||+|+++++ +..|+++..
T Consensus 264 ~a~~~~G~pmGPf~l~D~vGlD~~~~i~~~~----~--~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~~~~~~~~~~~ 337 (460)
T 3k6j_A 264 KIITNFGFLMGPMTVADMNGFDVMEKLKKEN----G--LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQ 337 (460)
T ss_dssp HHHHHHTBSSCHHHHHHHHCTHHHHHHHHHS----C--CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTCCEECCHHHHH
T ss_pred HHHHHcCCCcCHHHHHHHhchHHHHHHHHHh----c--cCchHHHHHHHHCCCCeeecCCEEEECCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999998765 1 23458999999999999999999999987553 578999988
Q ss_pred HHHHHhhccCccCCcccccCchHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHH
Q 008576 438 FIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKY 517 (561)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~ 517 (561)
++...+...++.+ ..+++++|++|++++++||+++||+|||+++++|||.+|++|+|||+|+||||+|+|.+|++.
T Consensus 338 ~~~~~~~~~~~~~----~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~ 413 (460)
T 3k6j_A 338 IIRRVSQNAKSNI----QIINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDK 413 (460)
T ss_dssp HHHHC---CCCSS----CCCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHH
T ss_pred HHHHHHHhcCCCc----ccCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHH
Confidence 8765443223322 257889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC--CCccHHHHHHHHcCCCcccCCc
Q 008576 518 IYSRLEEWSSLYGEF--FKPCAFLAERAGKGATLVRNLK 554 (561)
Q Consensus 518 ~~~~~~~~~~~~~~~--~~p~~~l~~~~~~g~~g~~~g~ 554 (561)
+++.++.|++.+|++ |+|+|+|++|+++|++|.|+|.
T Consensus 414 ~~~~l~~l~~~~g~~~~~~p~~~L~~~a~~g~~~~~~~~ 452 (460)
T 3k6j_A 414 IANMLVHWSSLEPKESAYIVADALKTANVSTGSSGSSGG 452 (460)
T ss_dssp HHHHHHHHHHHCTTCGGGSCCHHHHHHC-----------
T ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHcCCCccccCC
Confidence 999999999999997 9999999999999999999985
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-78 Score=644.64 Aligned_cols=431 Identities=30% Similarity=0.532 Sum_probs=373.8
Q ss_pred cCHHHHHHHHHHHhhccCCCCCCC---CCCCCCcccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 114 RSETCKSLVHIFFAQRGTSKVPGV---TDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 114 ~s~~~~~~~~aF~~kr~~~k~~~~---~~~~~~~~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
.|++++++++.|+.+|..+|.+.. ...+..+++++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+
T Consensus 1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i 80 (463)
T 1zcj_A 1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII 80 (463)
T ss_dssp -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 489999999999999999985431 11223456789999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHH
Q 008576 191 RANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (561)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l 270 (561)
.+.++..+++|.+++.+.+....+ .+++++.+++||+||+|||++.++|+++++++.+.+++++||+||||+++++++
T Consensus 81 ~~~l~~~~~~g~~~~~~~~~~~~~--i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l 158 (463)
T 1zcj_A 81 TFTLEKEASRAHQNGQASAKPKLR--FSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI 158 (463)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEE--EESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhh--hcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence 777777766654332211111122 356677789999999999999999999999999999999999999999999999
Q ss_pred HhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHc
Q 008576 271 GERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER 350 (561)
Q Consensus 271 ~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~ 350 (561)
++.+.+|++++|+|||+|++.++++|++++..|++++++.+.++++.+|++++++++.+||++||++.++++|+++++++
T Consensus 159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~ 238 (463)
T 1zcj_A 159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE 238 (463)
T ss_dssp HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhH---hhC-------CCC-CcccchHHHHHHCCcCccccCce
Q 008576 351 GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFI---ENF-------PER-TYKSMIIPIMQEDKRAGETTRKG 419 (561)
Q Consensus 351 G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~---~~~-------~~~-~~~~~~l~~~v~~G~~G~k~g~G 419 (561)
|+++++||.+++++|+|||||+++|.+|+|+++++++.+. +.+ .+. ..+++++++|+++|++|+|||+|
T Consensus 239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G 318 (463)
T 1zcj_A 239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG 318 (463)
T ss_dssp TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence 9999999999999999999999999999999999998772 221 111 11268999999999999999999
Q ss_pred eeeccC-CC-CCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhc
Q 008576 420 FYLYDE-RR-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGM 497 (561)
Q Consensus 420 fY~y~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~ 497 (561)
||+|++ +. ....++++..++.......+..+ ..++..+|.||++.+++|||++|++|||+++++|||.+|++|+
T Consensus 319 fy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~ 394 (463)
T 1zcj_A 319 WYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGY 394 (463)
T ss_dssp SEEESSTTCSCEEECHHHHHHHHHHHHHTTCCC----CCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHS
T ss_pred eccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCc----ccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence 999963 32 23578888888765543223221 2356789999999999999999999999988999999999999
Q ss_pred CCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC--CCCccHHHHHHHHcCCCcc
Q 008576 498 GFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE--FFKPCAFLAERAGKGATLV 550 (561)
Q Consensus 498 g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~~~~g~~g~ 550 (561)
|||+|+||||+|+|.+|++.++++++.|.+.+|+ +|.|+|+|++|+++|+.|.
T Consensus 395 G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~~~~ 449 (463)
T 1zcj_A 395 GWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPL 449 (463)
T ss_dssp CCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCG
T ss_pred CCCCCCcChHHHHHHhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999999998 8999999999999999876
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-76 Score=633.68 Aligned_cols=405 Identities=30% Similarity=0.490 Sum_probs=355.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+++||+|||+|.||++||..|+++|++|++||++++.++++.+.+.+.+++.+++|.++..+.+..+++++++++++.++
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALA 83 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999988888899999999998899
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+||||+.++|+++++++.+.+++++||+||||+++++++++.+.+|++++|+|||+|++.++++|++++..|++
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts~ 163 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAA 163 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+.++++.+|+.+++++|+|||++||++.++++|++.++++|. ++++||.+++ ++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~~ 243 (483)
T 3mog_A 164 EVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNF 243 (483)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999987 9999999999 899999999999999999999
Q ss_pred HHHhhhHhhC-CCCC-cccchHHHHHHCCcCccccCceeeeccCCCCCCC-----ChhHHHHHH----------------
Q 008576 384 ATGMQFIENF-PERT-YKSMIIPIMQEDKRAGETTRKGFYLYDERRKASP-----DPEVKKFIE---------------- 440 (561)
Q Consensus 384 ~~~~~l~~~~-~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~-----~~~~~~~~~---------------- 440 (561)
++++.+++.+ ++++ .|++++++|+++|++|+|||+|||+|+++++... +++...+++
T Consensus 244 ~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (483)
T 3mog_A 244 AVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLI 323 (483)
T ss_dssp HHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSCCCCCCCCCCCCGGGCCSCEEECSTTEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCCCCCcccccCCCchhHHHHHHHHhcccccccchhhc
Confidence 9999998876 3444 4678899999999999999999999976432111 222111000
Q ss_pred ----------H-Hhh--ccC----------c------------------cCCc-ccc--cCchHHHHHHHHHHHHHHHHH
Q 008576 441 ----------K-ARS--MSG----------V------------------AIDP-KFA--KLSEKDIVEMIFFPVVNEACR 476 (561)
Q Consensus 441 ----------~-~~~--~~~----------~------------------~~~~-~~~--~~~~~~i~~r~~~~~~~ea~~ 476 (561)
+ .+. ..+ + ...+ .+. .-+..+|+||++.+++|||++
T Consensus 324 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~~nEA~~ 403 (483)
T 3mog_A 324 ETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALD 403 (483)
T ss_dssp ECSSSCHHHHHHHHTSCEEEEECCSSSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHhhccccceeeeeccccceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHHHHHHHH
Confidence 0 000 000 0 0000 001 123468999999999999999
Q ss_pred HHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccHHHHHHHHcCCCcccCCc
Q 008576 477 VFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAFLAERAGKGATLVRNLK 554 (561)
Q Consensus 477 ~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l~~~~~~g~~g~~~g~ 554 (561)
|++|||+ +|+|||.+|++|+|||+ |||+|+|.+|++.++++++.|.+.+|+ +|.|+|+|++|+++|++|...|.
T Consensus 404 ~l~eGva-s~~diD~a~~~G~G~P~---GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~~~ 478 (483)
T 3mog_A 404 ALQKGVA-SEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESEGH 478 (483)
T ss_dssp HHHTTSS-CHHHHHHHHHHHSCCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC-----
T ss_pred HHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCCCc
Confidence 9999998 89999999999999999 999999999999999999999999986 99999999999999998877553
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-56 Score=446.78 Aligned_cols=268 Identities=22% Similarity=0.348 Sum_probs=237.9
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYE-S 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~ 223 (561)
.+.||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.++..+++|.++.. ..++.+++|+.+++++ .
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 4789999999999999999999999999999999999999999999999999999988754 4566788999999985 5
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+++||+|||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++++|+|||+++..|
T Consensus 85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T 164 (319)
T 3ado_A 85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET 164 (319)
T ss_dssp TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEE-cccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~ 377 (561)
++++++.+..+++.+|+.|+++ +|+||||+||++.++++||++++++|+ +++|||.+|+ ++|+| ||||+++|++
T Consensus 165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~ 244 (319)
T 3ado_A 165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN 244 (319)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence 9999999999999999999866 799999999999999999999999997 9999999999 88886 9999999999
Q ss_pred chHHHHHHHhhhHhhCCCCCcccchHHH-HHHCCcCccccCceeeecc
Q 008576 378 GFGVAIATGMQFIENFPERTYKSMIIPI-MQEDKRAGETTRKGFYLYD 424 (561)
Q Consensus 378 Gld~~~~~~~~l~~~~~~~~~~~~~l~~-~v~~G~~G~k~g~GfY~y~ 424 (561)
|+|+...+-+ +.+ .++. +.+.|+.+.++|+++|+|.
T Consensus 245 G~~~~~~~~~-~~~----------~~~~~~~~~~~~p~~~~~~~~k~~ 281 (319)
T 3ado_A 245 AEGMLSYCDR-YSE----------GMKRVLKSFGSIPEFSGATVEKVN 281 (319)
T ss_dssp TTSHHHHHHH-HHH----------HHHHHHHTCCCCCCCCHHHHHHHH
T ss_pred CccHHHHHHH-hhH----------hHHHHHHHcCcccccchHHHHHHH
Confidence 9987654322 111 1222 2233566666666666554
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=434.23 Aligned_cols=258 Identities=30% Similarity=0.446 Sum_probs=239.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+-+||+|||+|.||++||..|+ +|++|++||++++.++++.+. + .++.++++++++++++++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-------------l----~~~~~~~i~~~~~~~~~~ 72 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-------------I----PEELLSKIEFTTTLEKVK 72 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-------------S----CGGGGGGEEEESSCTTGG
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-------------H----HHHHhCCeEEeCCHHHHc
Confidence 4579999999999999999999 999999999999998876643 1 133456777788887799
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||||+||+.++|+.+|+++++. +++|++||||+++++++++.+.+|.+++|+|||+|++.++++|++++..|++
T Consensus 73 ~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~ 150 (293)
T 1zej_A 73 DCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDS 150 (293)
T ss_dssp GCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCH
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCH
Confidence 99999999999999999999999887 8999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCc---cHHHHHHHhchHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPM---GPFRLADLVGFGV 381 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~-~~G~~~---GPf~~~D~~Gld~ 381 (561)
++++.+.++++.+|+.+++++|. |++||++.++++||+.++++|+++++||.+++ ++|+|+ |||+++|.+|+|+
T Consensus 151 ~~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~ 228 (293)
T 1zej_A 151 KTVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDV 228 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHH
Confidence 99999999999999999999986 99999999999999999999999999999999 899999 9999999999999
Q ss_pred HHHHHhhhHhhCCCC-CcccchHHHHHHCCcCccccCceeeeccC
Q 008576 382 AIATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (561)
Q Consensus 382 ~~~~~~~l~~~~~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~~ 425 (561)
++++++.+++.+++. +.|++++++|+++|++|+|||+|||+|++
T Consensus 229 ~~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~ 273 (293)
T 1zej_A 229 AYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP 273 (293)
T ss_dssp HHHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred HHHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence 999999999998874 45788999999999999999999999964
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-54 Score=433.42 Aligned_cols=275 Identities=27% Similarity=0.409 Sum_probs=255.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHhhhcccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-KMTQEKFEKTISLLTGVLDYE-S 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~-~ 223 (561)
.++||+|||+|.||.+||..|+.+|++|++||++++.++++.+.+.+.+...++.+ .++..+.+....++..+++++ .
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 47899999999999999999999999999999999999999999988888888887 777777777778888888885 4
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+++||+||+|+|++.++|+.+++++.+.+++++||+||||+++++++++.+.++.+++|+|||+|++.++++|++++..|
T Consensus 83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t 162 (283)
T 4e12_A 83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT 162 (283)
T ss_dssp TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEE-cccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchH
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld 380 (561)
++++++.+.++++.+|+.++++ ++.|||++||++.++++||++++++|. +|++||.+++ ++|+|||||+++|++|||
T Consensus 163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld 242 (283)
T 4e12_A 163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLT 242 (283)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHH
Confidence 9999999999999999999999 689999999999999999999999986 9999999999 999999999999999999
Q ss_pred HHHHHHhhhHhhCCCC-CcccchHHHHHHCCcCccccCceeeec
Q 008576 381 VAIATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (561)
Q Consensus 381 ~~~~~~~~l~~~~~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y 423 (561)
++++++++ ..++. +.|++++++|+++|++|+|||+|||+|
T Consensus 243 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y 283 (283)
T 4e12_A 243 TAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY 283 (283)
T ss_dssp HHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred HHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence 99999873 22222 236788999999999999999999998
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=424.52 Aligned_cols=280 Identities=34% Similarity=0.541 Sum_probs=259.7
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-----HHHhhhccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-----KFEKTISLLTGVL 219 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-----~~~~~~~~i~~~~ 219 (561)
.+|+||+|||+|.||.+||..|+++|++|++||++++.++.+.+.+.+.++..++.|.++.. .......+++.++
T Consensus 13 ~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 92 (302)
T 1f0y_A 13 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 92 (302)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence 45789999999999999999999999999999999999999888888888888888887654 3444556787788
Q ss_pred ccc-ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEE
Q 008576 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 298 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv 298 (561)
+++ .+++||+||+|||++.++|+.+++++.+.+++++||+||+|+++++++++.+.+|++++|+||++|++.++++|++
T Consensus 93 ~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~i~ 172 (302)
T 1f0y_A 93 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI 172 (302)
T ss_dssp CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred CHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEe
Confidence 876 6899999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHH
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL 376 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~ 376 (561)
++..+++++++.+.++++.+|+.++++++.+||++||++.++++|+++++++|. ++++||.+++ ++|||+|||+++|.
T Consensus 173 ~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~D~ 252 (302)
T 1f0y_A 173 KTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDY 252 (302)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 999999999999999999999999999988999999999999999999999985 9999999998 99999999999999
Q ss_pred hchHHHHHHHhhhHhhC-CCC-CcccchHHHHHHCCcCccccCceeeecc
Q 008576 377 VGFGVAIATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (561)
Q Consensus 377 ~Gld~~~~~~~~l~~~~-~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~ 424 (561)
+|+|+++++++.+++.+ +++ +.|+++|++|+++|++|+|||+|||+|+
T Consensus 253 ~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~ 302 (302)
T 1f0y_A 253 VGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302 (302)
T ss_dssp HCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred HHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence 99999999999999988 775 5578999999999999999999999994
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-25 Score=186.48 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=85.6
Q ss_pred hcCCceE-EEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhC
Q 008576 317 KIKKTPI-VVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENF 393 (561)
Q Consensus 317 ~lGk~~v-~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~ 393 (561)
.++|.+| +++|.||||+||++.++++||++++++|+ +++|||.+|+ ++|||+|||+++|.+|+|+++++++.+++.+
T Consensus 3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~ 82 (110)
T 3ctv_A 3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF 82 (110)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678899 78899999999999999999999999997 9999999999 9999999999999999999999999999988
Q ss_pred CC-CCcccchHHHHHHCCcCccccCce
Q 008576 394 PE-RTYKSMIIPIMQEDKRAGETTRKG 419 (561)
Q Consensus 394 ~~-~~~~~~~l~~~v~~G~~G~k~g~G 419 (561)
++ ++.|+++|++|+++|++|+|||+|
T Consensus 83 g~~~~~p~~~L~~~v~~G~lG~k~g~G 109 (110)
T 3ctv_A 83 GKKIFEPAKTLKEGKLEELLKAGKAEG 109 (110)
T ss_dssp CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence 87 556889999999999999999988
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=221.48 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=135.0
Q ss_pred cCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHH
Q 008576 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY 340 (561)
Q Consensus 261 ~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~ 340 (561)
.+++.+.++. ...+|.++++.|+++ ++++|++++..|++++++.+..+++.+|+.+++++|.||||+||++.++
T Consensus 324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~ 397 (483)
T 3mog_A 324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI 397 (483)
T ss_dssp ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence 3556666666 345688999999988 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCCC-CCcccchHHHHHHCCcCccc
Q 008576 341 TQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDKRAGET 415 (561)
Q Consensus 341 ~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~~G~k 415 (561)
+|||++++++|+ +++|||.+|+ |+|||+|||+|+|.+|+|+++++++.|++.+++ ++.|+++|++|+++|++|..
T Consensus 398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~ 475 (483)
T 3mog_A 398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYES 475 (483)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCC
Confidence 999999999998 9999999999 999999999999999999999999999999987 55688999999999866543
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-22 Score=171.45 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCcc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPC 536 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 536 (561)
+..+|.||++.+++|||++|++|||+ +++|||.+|++|+|||+ |||+++|.+|++.++++++.+.+.+++ +|.|+
T Consensus 15 ~~gfi~nRll~~~~~eA~~ll~eGva-~~~dID~a~~~g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~ 90 (110)
T 3ctv_A 15 TDKINPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKRLEELAKQFGKKIFEPA 90 (110)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHTTCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 34589999999999999999999999 99999999999999999 999999999999999999999999998 89999
Q ss_pred HHHHHHHHcCCCcccCCcc
Q 008576 537 AFLAERAGKGATLVRNLKL 555 (561)
Q Consensus 537 ~~l~~~~~~g~~g~~~g~G 555 (561)
++|++|+++|++|.|+|+|
T Consensus 91 ~~L~~~v~~G~lG~k~g~G 109 (110)
T 3ctv_A 91 KTLKEGKLEELLKAGKAEG 109 (110)
T ss_dssp HHHHTTTHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCCccCCCC
Confidence 9999999999999999998
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-21 Score=195.60 Aligned_cols=201 Identities=17% Similarity=0.240 Sum_probs=159.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||.+||..|+.+|+ +|++||++++.++.....+.... .......++..+++++++++
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~t~d~~a~~~ 72 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSM------------VMFGSTSKVIGTDDYADISG 72 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHH------------HHHTCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhh------------hhcCCCcEEEECCCHHHhCC
Confidence 589999999999999999999999 99999999887765321111110 00111235666677888999
Q ss_pred CCEEEEec--------------cCChhhHHHHHHHHHhhcCCCcee--eecCCCCCHHHHHhhccC-ccceecccccCCC
Q 008576 227 VDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYS-KDRIVGAHFFSPA 289 (561)
Q Consensus 227 aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~~-~~r~ig~h~~~P~ 289 (561)
||+||+|+ +++..+++++++++.++++ ++++ +||++++....+++.... |+|++|+
T Consensus 73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------ 145 (317)
T 2ewd_A 73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------ 145 (317)
T ss_dssp CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence 99999999 7888999999999999975 7766 688877777777776655 6888875
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhh---HHHHHHHHH-------HHHHHcCC-CHHHHH
Q 008576 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNR---MFFPYTQAA-------FLLVERGT-DLYLID 358 (561)
Q Consensus 290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nr---l~~~~~~ea-------~~l~~~G~-~~~~ID 358 (561)
.|..++......+.+.+|+. .++.+||++|| .+.++++++ ..++++|+ +++++|
T Consensus 146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id 210 (317)
T 2ewd_A 146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID 210 (317)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence 36788888888898999976 36889999999 888888888 88899985 999999
Q ss_pred HHHHhcCCCccHHHHHHHhch-HHHHH
Q 008576 359 RAITKFGMPMGPFRLADLVGF-GVAIA 384 (561)
Q Consensus 359 ~a~~~~G~~~GPf~~~D~~Gl-d~~~~ 384 (561)
.+++.. ++|||+++|..|. ++.+.
T Consensus 211 ~~~~~~--~~~~~ei~~~~g~g~~~~~ 235 (317)
T 2ewd_A 211 EIVCHT--RIAWKEVADNLKTGTAYFA 235 (317)
T ss_dssp HHHHHH--HHHHHHHHHHHSSSCCCHH
T ss_pred HHHHHH--HhhHHHHHHhhcCCchHHH
Confidence 999832 7899999998887 55444
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=172.88 Aligned_cols=191 Identities=15% Similarity=0.132 Sum_probs=144.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
.+||+|||+|.||.+|+..|+++|+ +|++||+++++++...+. .| +..+++. +
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------~g-------------i~~~~~~~~ 59 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------CG-------------VHTTQDNRQ 59 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------TC-------------CEEESCHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------cC-------------CEEeCChHH
Confidence 4689999999999999999999999 999999999887764321 02 2233343 5
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhh-cCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~ 300 (561)
.+++||+||+||| ++.+.++++++.+. ++++++|+|++++++++.+++.++.+.++++.||++|...+..++ ++++
T Consensus 60 ~~~~aDvVilav~--p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~ 137 (280)
T 3tri_A 60 GALNADVVVLAVK--PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN 137 (280)
T ss_dssp HHSSCSEEEECSC--GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred HHhcCCeEEEEeC--HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence 6789999999997 57889999999998 889989999999999999999888888999999999998887776 5678
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEccc--ccchh-h---hHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--TGFAV-N---RMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~i~-n---rl~~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (561)
+.++++.++.+.++++.+|+.+++..+. ..+.. . .-+..++.|++. .+..|+++++.-.++.
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~ 207 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTE 207 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8899999999999999999844332321 11100 0 011122334432 3467887777666554
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=175.62 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHh-CC-CCCccH
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLY-GE-FFKPCA 537 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~-~~-~~~p~~ 537 (561)
.++.||++.+++||+++++++|++ ++++||.++..|+|||+ |||+++|.+|+|.++++++.+.+.+ ++ +|.|++
T Consensus 204 g~i~nr~l~~~~~Ea~~l~~~g~~-~~~~id~~~~~g~g~p~---GP~~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~ 279 (302)
T 1f0y_A 204 GFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSP 279 (302)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcCH
Confidence 589999999999999999999999 89999999999999996 9999999999999999999999888 77 599999
Q ss_pred HHHHHHHcCCCcccCCccccccC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+|++|+++|++|+|+|+|||+|+
T Consensus 280 ~l~~~~~~g~~G~k~g~Gfy~y~ 302 (302)
T 1f0y_A 280 SLNKLVAENKFGKKTGEGFYKYK 302 (302)
T ss_dssp HHHHHHHTTCCBTTTTBSSSBCC
T ss_pred HHHHHHHcCCCccccCcEeeeCC
Confidence 99999999999999999999994
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-19 Score=176.77 Aligned_cols=99 Identities=26% Similarity=0.299 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccHHH
Q 008576 461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAFL 539 (561)
Q Consensus 461 ~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l 539 (561)
+++||++.++++||+.++++|+ +|++||.++..|+|+|+...|||+++|.+|+|.++++++.+.+.+++ +|.|+|+|
T Consensus 174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~l 251 (293)
T 1zej_A 174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFKPPEWL 251 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCHHH
Confidence 9999999999999999999999 69999999999999998888999999999999999999999999887 89999999
Q ss_pred HHHHHcCCCcccCCccccccCC
Q 008576 540 AERAGKGATLVRNLKLFFSYLE 561 (561)
Q Consensus 540 ~~~~~~g~~g~~~g~Gfy~y~~ 561 (561)
++|+++|++|+|+|+|||+|++
T Consensus 252 ~~~v~~G~lG~Ktg~Gfy~y~~ 273 (293)
T 1zej_A 252 QEKIKKGEVGVKAGKGIYEYGP 273 (293)
T ss_dssp HHHHHTTCCBGGGTBSSSBCCT
T ss_pred HHHHHCCCCccccCCEeeecCc
Confidence 9999999999999999999964
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=167.83 Aligned_cols=211 Identities=10% Similarity=0.032 Sum_probs=154.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
+||+|||+|.||..+|..|+..|++ |++||++++.++...+. .+ +...+++ +.+.
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~~ 67 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK----------VE-------------AEYTTDLAEVNP 67 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH----------TT-------------CEEESCGGGSCS
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH----------cC-------------CceeCCHHHHhc
Confidence 5899999999999999999999999 99999999887653311 01 2234455 4478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC-----CCCeEEEEeC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-----VMPLLEIVRT 300 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~-----~~~lveiv~~ 300 (561)
+||+||+|+|++ . ..++++++.+.++++++|++++++++.+.+++.+..+. ..|+++|.. .++.+.++-
T Consensus 68 ~~Dvvi~av~~~-~-~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~v- 141 (266)
T 3d1l_A 68 YAKLYIVSLKDS-A-FAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYG---VFYPMQTFSKQREVDFKEIPFFI- 141 (266)
T ss_dssp CCSEEEECCCHH-H-HHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSEE---EEEECCCC---CCCCCTTCCEEE-
T ss_pred CCCEEEEecCHH-H-HHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhcc---CcCCceecCCCchhhcCCCeEEE-
Confidence 999999999965 3 37888889888889999999999999877765554322 357766522 222222222
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEccc--ccc-----hhhhHHH--HHHHHHHHHHHcCCCHHHHHHH--------HH-
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-----AVNRMFF--PYTQAAFLLVERGTDLYLIDRA--------IT- 362 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~-----i~nrl~~--~~~~ea~~l~~~G~~~~~ID~a--------~~- 362 (561)
..++++.++.+.++++.+|+.++.+++. +++ ++|++.. ..+.|++. ...|++++++..+ ++
T Consensus 142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~ 220 (266)
T 3d1l_A 142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL 220 (266)
T ss_dssp EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence 2358899999999999999999998753 456 6777763 34456532 4679988887443 33
Q ss_pred hc-CCCccHHHHHHHhchHHHHHHHhh
Q 008576 363 KF-GMPMGPFRLADLVGFGVAIATGMQ 388 (561)
Q Consensus 363 ~~-G~~~GPf~~~D~~Gld~~~~~~~~ 388 (561)
+. +.++||+...|..|++..+..++.
T Consensus 221 ~~~~~~~GP~~r~d~~~l~~~l~~l~~ 247 (266)
T 3d1l_A 221 EPKTAQTGPAIRYDENVIGNHLRMLAD 247 (266)
T ss_dssp CHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred ChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence 32 457899999999999998887754
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-17 Score=159.04 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=143.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
+||+|||+|.||.+|+..|+++|+ +|++||+++++++...+. .| +...++. +
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~e 59 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEK----------YG-------------LTTTTDNNE 59 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHH----------HC-------------CEECSCHHH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHH----------hC-------------CEEeCChHH
Confidence 689999999999999999999998 999999999987764321 12 2233344 4
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCC-eEEEEeCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTN 301 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~ 301 (561)
.+.+||+||+|++ +....++++++.+.++++++|+|.+++++++.+++.+..+.++++.||++|+.... .+.+++++
T Consensus 60 ~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~ 137 (247)
T 3gt0_A 60 VAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE 137 (247)
T ss_dssp HHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred HHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence 4788999999996 56788899999988999999999999999999988887778999999999998776 67788888
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEcccc-----cchhh-hHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCT-----GFAVN-RMFFPYTQAAFLL--VERGTDLYLIDRAIT 362 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~-----G~i~n-rl~~~~~~ea~~l--~~~G~~~~~ID~a~~ 362 (561)
.++++.++.++++++.+|+ ++.+.+.. +.... ..+...+.|++.. +..|+++++...++.
T Consensus 138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~ 205 (247)
T 3gt0_A 138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAA 205 (247)
T ss_dssp TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999998 55554321 10100 1122234555443 457889888887775
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=159.76 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=127.8
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (561)
.++||+|||+|.||.+||..|.++|+ +|++||++++.++.+. +.|.++ ..+++++
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~~-----------~~~~~~~~ 89 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAK 89 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCTTG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------hhcCCHHH
Confidence 35799999999999999999999999 9999999998876543 334321 1234543
Q ss_pred -ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCC---------
Q 008576 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH--------- 290 (561)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~--------- 290 (561)
.+.+||+||+|||.+ ...++++++.+.+++++||++++|... +..+.+.++ .+|++.||+.++.
T Consensus 90 ~~~~~aDvVilavp~~--~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~ 165 (314)
T 3ggo_A 90 VEDFSPDFVMLSSPVR--TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLD 165 (314)
T ss_dssp GGGGCCSEEEECSCGG--GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCT
T ss_pred HhhccCCEEEEeCCHH--HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhh
Confidence 578999999999954 567889999999999999988777643 456665553 3899999998643
Q ss_pred ---CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccchh
Q 008576 291 ---VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAV 333 (561)
Q Consensus 291 ---~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i~ 333 (561)
.+..+.+++++.++++.++.+.++++.+|+.++.++. ....++
T Consensus 166 ~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~ 212 (314)
T 3ggo_A 166 NLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVF 212 (314)
T ss_dssp TTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHH
T ss_pred hhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHH
Confidence 2467888888889999999999999999999998863 344443
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-18 Score=168.04 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhC-CCCCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYG-EFFKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~-~~~~p~~ 537 (561)
..++.||++.++++||++++++|++ +|++||.++..|+|||+ |||+++|.+|+|..++++++ .++ +++.|++
T Consensus 189 ~g~i~nr~~~~~~~ea~~l~~~g~~-~~~~id~~~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~---~~~~~~~~~~~ 261 (283)
T 4e12_A 189 AGYVLNSLLVPLLDAAAELLVDGIA-DPETIDKTWRIGTGAPK---GPFEIFDIVGLTTAYNISSV---SGPKQREFAAY 261 (283)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHT---SCHHHHHHHHH
T ss_pred CCEEehHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---CHHHHHHhccHHHHHHHHhc---cccCcccCchH
Confidence 3579999999999999999999999 89999999999999999 99999999999999999883 222 2467889
Q ss_pred HHHHHHHcCCCcccCCcccccc
Q 008576 538 FLAERAGKGATLVRNLKLFFSY 559 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y 559 (561)
++++|+++|++|+|+|+|||+|
T Consensus 262 ~~~~~v~~g~lG~k~g~Gfy~y 283 (283)
T 4e12_A 262 LKENYIDKGKLGLATGEGFYRY 283 (283)
T ss_dssp HHHHTGGGTCCBGGGTBSSSBC
T ss_pred HHHHHHHCCCCceeCCeEeecC
Confidence 9999999999999999999999
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=157.28 Aligned_cols=188 Identities=17% Similarity=0.240 Sum_probs=135.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
.|+||+|||+|.||.+||.+|+++||+|++|||++++++... +.|. +...++ +.+
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~a~s~~e~~ 57 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAGA-------------SAARSARDAV 57 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC-------------EECSSHHHHH
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HcCC-------------EEcCCHHHHH
Confidence 378999999999999999999999999999999999877633 3332 233444 457
Q ss_pred CCCCEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceeccccc-CCCCC-------
Q 008576 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV------- 291 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~~------- 291 (561)
++||+||.|+|.+..+...++. .+.+.++++++|+. +|+.++. ++++.+.. .|.||. .|+..
T Consensus 58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId-~sT~~p~~~~~~a~~~~~----~G~~~lDaPVsGg~~~A~~ 132 (300)
T 3obb_A 58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARE----RGLAMLDAPVSGGTAGAAA 132 (300)
T ss_dssp TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEE-CSCCCHHHHHHHHHHHHT----TTCEEEECCEESCHHHHHH
T ss_pred hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCEEEecCCCCCHHHHHh
Confidence 8999999999977665554443 26667788887764 4445544 44444432 267776 35543
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~~~----~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
..+.-++.| +++.+++++++++.+|+.++++++ ..|. ++|+++... +.|++.+.+ .|++++.+-.++.
T Consensus 133 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~ 209 (300)
T 3obb_A 133 GTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMR 209 (300)
T ss_dssp TCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 345666666 789999999999999999999986 2343 466665532 579988876 6899999999987
Q ss_pred -hcC
Q 008576 363 -KFG 365 (561)
Q Consensus 363 -~~G 365 (561)
+.+
T Consensus 210 ~~~~ 213 (300)
T 3obb_A 210 RSSG 213 (300)
T ss_dssp TSTT
T ss_pred hCcc
Confidence 543
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=156.28 Aligned_cols=208 Identities=10% Similarity=0.013 Sum_probs=138.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
+||+|||+|.||.+|+..|+++ ++| .+||++++.++...+. .+ . .+++++ .+.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------~g------------~--~~~~~~~~~~ 57 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------YG------------G--KAATLEKHPE 57 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------TC------------C--CCCSSCCCCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------cC------------C--ccCCHHHHHh
Confidence 5899999999999999999988 999 5999999877653311 11 1 234444 478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceeccccc----CCC-CC---CCeEEE
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFF----SPA-HV---MPLLEI 297 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~----~P~-~~---~~lvei 297 (561)
+||+||+|+|++. ..+++.++. .++++|++.+++++.+.+... .+.+.|+. +++ .. ..+.-.
T Consensus 58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~ 127 (276)
T 2i76_A 58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG 127 (276)
T ss_dssp ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence 8999999999764 567776664 577888766556777665432 34556643 322 21 122223
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCceEEEccc--cc-----chhhhHHHHHHHHHHHHHH-cCCCH----------HHHHH
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--TG-----FAVNRMFFPYTQAAFLLVE-RGTDL----------YLIDR 359 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G-----~i~nrl~~~~~~ea~~l~~-~G~~~----------~~ID~ 359 (561)
+.+ +++.++.++++++.+|+.++.+++. +. .+.+..+..++.++..+.. .|++. ..++.
T Consensus 128 ~~~---~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~ 204 (276)
T 2i76_A 128 LEG---DERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADN 204 (276)
T ss_dssp ECC---CTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred EEe---ChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 333 4566889999999999988888742 21 2344466667788877776 68844 46777
Q ss_pred HHH-h-cCCCccHHHHHHHhchHHHHHHHhhhHhhC
Q 008576 360 AIT-K-FGMPMGPFRLADLVGFGVAIATGMQFIENF 393 (561)
Q Consensus 360 a~~-~-~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~ 393 (561)
+++ + .+.++||++..|..+++..++.++.+++.+
T Consensus 205 ~~~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~ 240 (276)
T 2i76_A 205 IKKMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT 240 (276)
T ss_dssp HHHSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred HHhcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence 777 5 677899999999999999999998875444
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=154.92 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=125.4
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
..++||+|||+|.||.+||..|+++|+ +|++||++ ++..+... +.| +..+++.
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~g-------------~~~~~~~ 77 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------ELG-------------VSCKASV 77 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HTT-------------CEECSCH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HCC-------------CEEeCCH
Confidence 346799999999999999999999999 99999997 45544321 222 2234444
Q ss_pred -cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccCCCC-------C
Q 008576 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFSPAH-------V 291 (561)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~P~~-------~ 291 (561)
+.+++||+||+|||++... ++++++.+.++++++|++.+|..+.+ ++.+.+ +++++|.||++++- .
T Consensus 78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~--~~~~~g~~~vd~pv~g~~~~~~ 153 (312)
T 3qsg_A 78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVI--SRHRPSAQYAAVAVMSAVKPHG 153 (312)
T ss_dssp HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHH--HHHCTTCEEEEEEECSCSTTTG
T ss_pred HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHH--HhhcCCCeEEeccccCCchhhc
Confidence 4478899999999977654 46788999999999888666554433 333333 22334556543221 1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccc-----hhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHH
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAI 361 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~-----i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~ 361 (561)
..+..+++++.. +.++++++.+|+.++++++.+|. ++|+++. ..++|++.+.+ .|++++-+ ..+
T Consensus 154 g~l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~-~~l 227 (312)
T 3qsg_A 154 HRVPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVL-ASL 227 (312)
T ss_dssp GGSEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH-HHH
T ss_pred CCEEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHH
Confidence 356777777543 78899999999999998864443 4555554 55789988776 58888544 455
Q ss_pred H
Q 008576 362 T 362 (561)
Q Consensus 362 ~ 362 (561)
.
T Consensus 228 ~ 228 (312)
T 3qsg_A 228 D 228 (312)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=155.29 Aligned_cols=186 Identities=16% Similarity=0.200 Sum_probs=131.3
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.+++||+|||+|.||.+||..|+++|++|++||+++++++... +.| +..++++ +.
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~~~~~~ 74 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV-----------EHG-------------ASVCESPAEV 74 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-----------HTT-------------CEECSSHHHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CeEcCCHHHH
Confidence 4578999999999999999999999999999999998776532 222 2234444 44
Q ss_pred cCCCCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCC-------
Q 008576 224 FKDVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------- 290 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~------- 290 (561)
+++||+||+|+|++..++..++ +++.+.+.++++|++.+ +.++. .+.+.+... |.||+. |+.
T Consensus 75 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~----g~~~v~~pv~g~~~~a~ 149 (310)
T 3doj_A 75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAITGK----GGRFVEGPVSGSKKPAE 149 (310)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHT----TCEEEECCEECCHHHHH
T ss_pred HHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHc----CCEEEeCCCCCChhHHh
Confidence 7889999999997666554443 66778888888876544 44433 333333211 344432 221
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-ccc----chhhhHHH---HHHHHHHHHHH-cCCCHHHHHHHH
Q 008576 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG----FAVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAI 361 (561)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G----~i~nrl~~---~~~~ea~~l~~-~G~~~~~ID~a~ 361 (561)
...++.++.+ +++.++.++++++.+|+.++++++ ..| ++.|.+.. ..++|++.+.+ .|++++++..++
T Consensus 150 ~g~l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~ 226 (310)
T 3doj_A 150 DGQLIILAAG---DKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDIL 226 (310)
T ss_dssp HTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cCCeEEEEcC---CHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2345666666 588999999999999999999976 223 23344332 34689999886 588999999998
Q ss_pred H
Q 008576 362 T 362 (561)
Q Consensus 362 ~ 362 (561)
.
T Consensus 227 ~ 227 (310)
T 3doj_A 227 D 227 (310)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=163.95 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVF-AEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l-~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (561)
..+++||++.++++||++++ ++| + +|++||.++. ++|||+ |||+++|.+|+|+.+++.+.+ .+.|++
T Consensus 233 pGfi~Nril~~~~~EA~~l~~~~G-a-~~e~ID~a~~-~~G~pm---GPf~l~D~vGlD~~~~i~~~~------~~~~~~ 300 (460)
T 3k6j_A 233 KSFVFNRLLHVYFDQSQKLMYEYG-Y-LPHQIDKIIT-NFGFLM---GPMTVADMNGFDVMEKLKKEN------GLEPNP 300 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSC-C-CHHHHHHHHH-HHTBSS---CHHHHHHHHCTHHHHHHHHHS------CCCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHh------ccCchH
Confidence 46899999999999999999 788 5 7999999997 899999 999999999999999988765 245679
Q ss_pred HHHHHHHcCCCcccCCccccccCC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYLE 561 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~~ 561 (561)
+|++|+++|++|+|+|+|||+|++
T Consensus 301 ~l~~~v~~G~lG~KtG~GFY~y~~ 324 (460)
T 3k6j_A 301 IEKEMWRLKRYGRKTNKGFYKYDD 324 (460)
T ss_dssp HHHHHHHTTCCBGGGTBSSSEECT
T ss_pred HHHHHHHCCCCeeecCCEEEECCC
Confidence 999999999999999999999963
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=152.31 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=127.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||.+|+++||+|++||+++++.+... +.| .....+. +.+++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~~ 61 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLT-----------KLG-------------ATVVENAIDAITP 61 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTT-----------TTT-------------CEECSSGGGGCCT
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeEeCCHHHHHhc
Confidence 4899999999999999999999999999999998765421 222 2233444 55789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceeccccc-CCCCC-------CCeE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MPLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~~-------~~lv 295 (561)
||+||.|+|.+..+...+...+.+.+.++.|++. .|+.++. ++++.+.. .|.+|. .|+.. ..+.
T Consensus 62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid-~sT~~p~~~~~~~~~~~~----~g~~~ldapVsGg~~~a~~g~l~ 136 (297)
T 4gbj_A 62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVS-MSTISPETSRQLAQVHEW----YGAHYVGAPIFARPEAVRAKVGN 136 (297)
T ss_dssp TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEE-CSCCCHHHHHHHHHHHHH----TTCEEEECCEECCHHHHHHTCCE
T ss_pred CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEE-CCCCChHHHHHHHHHHHh----cCCceecCCcCCCccccccccce
Confidence 9999999998776666666778888888887764 3444444 34443321 256665 34432 2344
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc--c---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hc
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KF 364 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~~-~~ 364 (561)
-++.+ +++.++.++++++.+|+.++++++.+| . ++|+++.. .+.|++.+.+ .|++++++-.++. +.
T Consensus 137 im~gG---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~ 213 (297)
T 4gbj_A 137 ICLSG---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTL 213 (297)
T ss_dssp EEEEE---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred eeccc---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 44455 789999999999999999999886444 2 56666553 3579988876 6899999999887 44
Q ss_pred C
Q 008576 365 G 365 (561)
Q Consensus 365 G 365 (561)
+
T Consensus 214 ~ 214 (297)
T 4gbj_A 214 F 214 (297)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=149.95 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=131.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
.+||+|||+|.||.+||..|+++|++|++||+++++++... +.|. ...++++ +.++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~e~~~ 63 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLL-----------AEGA------------CGAAASAREFAG 63 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC------------SEEESSSTTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HcCC------------ccccCCHHHHHh
Confidence 46999999999999999999999999999999998877633 2231 1113444 4578
Q ss_pred CCCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCHH---HHHhhccC-ccceecccccCC-C---CCCCeE
Q 008576 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYS-KDRIVGAHFFSP-A---HVMPLL 295 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-~~r~ig~h~~~P-~---~~~~lv 295 (561)
+||+||+|+|++..++..++ +++.+.++++++|++.+ +.++. .+.+.+.. ...|+. ||+.. + ....++
T Consensus 64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~s-t~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~ 141 (303)
T 3g0o_A 64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSS-TISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMT 141 (303)
T ss_dssp TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECS-CCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEE
T ss_pred cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecC-CCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeE
Confidence 99999999997655554443 66778888898886544 44433 34443322 223444 33211 1 112455
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc--c---hhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.++.+ +++.++.++++++.+|+.++.+++.+| . ++|+++. ..++|++.+.+ .|++++++..++.
T Consensus 142 ~~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~ 215 (303)
T 3g0o_A 142 VMASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVT 215 (303)
T ss_dssp EEEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred EEeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55554 689999999999999999999886344 2 3444443 34789988876 5889999999987
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=151.14 Aligned_cols=188 Identities=18% Similarity=0.130 Sum_probs=132.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.++|..|+++|++|++||+++++++... +.| +..++++ +.+.+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~ 57 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA-----------ALG-------------AERAATPCEVVES 57 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-----------HTT-------------CEECSSHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHhc
Confidence 5899999999999999999999999999999998876533 112 2334455 34688
Q ss_pred CCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCHH---HHHhhcc-CccceecccccCC-C---CCCCeEE
Q 008576 227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSP-A---HVMPLLE 296 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P-~---~~~~lve 296 (561)
||+||+|+|++..++..++ +++.+.++++++|++. |+.++. ++.+.+. ...+|+. ||+.+ + ....++.
T Consensus 58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~ 135 (287)
T 3pef_A 58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLII 135 (287)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEE
T ss_pred CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEE
Confidence 9999999997666555444 7788888889887655 444433 3333332 2223333 33221 1 1134555
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hc
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KF 364 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~~-~~ 364 (561)
++.+ +++.++.++++++.+|+.++.+++ ..+. ++|+++.. .++|++.+.+ .|++++++..++. +.
T Consensus 136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~ 210 (287)
T 3pef_A 136 LAAG---DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA 210 (287)
T ss_dssp EEEE---CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred EEeC---CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 6665 688999999999999999999875 2333 34555443 5789998876 5889999999998 44
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-15 Score=148.37 Aligned_cols=182 Identities=18% Similarity=0.224 Sum_probs=129.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~~ 226 (561)
+||+|||+|.||.++|..|+++|++|++||+++++++... +.| +..++++++ ++
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~- 70 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLA-----------EAG-------------ATLADSVADVAA- 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHH-----------HTT-------------CEECSSHHHHTT-
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CEEcCCHHHHHh-
Confidence 5899999999999999999999999999999998776533 112 334555544 56
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCC-------CCCeEE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAH-------VMPLLE 296 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~-------~~~lve 296 (561)
||+||+|+|++..+ +.+++++.+.++++++|++.++..+.+ ++.+.+... |.||+. |+. ...++.
T Consensus 71 aDvvi~~vp~~~~~-~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~l~~ 145 (296)
T 3qha_A 71 ADLIHITVLDDAQV-REVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKAR----DIHIVDAPVSGGAAAAARGELAT 145 (296)
T ss_dssp SSEEEECCSSHHHH-HHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGG----TCEEEECCEESCHHHHHHTCEEE
T ss_pred CCEEEEECCChHHH-HHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHc----CCEEEeCCCcCCHHHHhcCCccE
Confidence 99999999976554 455688888888998887554443322 344444321 444442 221 235566
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHH----HHHHHHHHHHH-cCCCHHHH------HHHH
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLI------DRAI 361 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~~-~G~~~~~I------D~a~ 361 (561)
++.+ +++.++.++++++.+|+.++++++ ..|. ++|+.+. ..++|++.+.+ .|++++++ ..++
T Consensus 146 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i 222 (296)
T 3qha_A 146 MVGA---DREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDAL 222 (296)
T ss_dssp EEEC---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EecC---CHHHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHH
Confidence 6666 689999999999999999999875 2232 3444443 33689999886 58899999 7777
Q ss_pred H
Q 008576 362 T 362 (561)
Q Consensus 362 ~ 362 (561)
.
T Consensus 223 ~ 223 (296)
T 3qha_A 223 T 223 (296)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=142.68 Aligned_cols=157 Identities=10% Similarity=0.023 Sum_probs=125.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
.+||+|||+|.||++||..|.++|++|++||+. +++.+
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~~ 43 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIRD 43 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGGG
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhcc
Confidence 469999999999999999999999999999972 12457
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHH
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ 306 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e 306 (561)
|| |.|||.+ ...++++++.+.+++++||++.+++.+...+......+.+|++.||+... ..-+..+ +++
T Consensus 44 aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~----~~~i~a~---d~~ 112 (232)
T 3dfu_A 44 FE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD----RWVASAL---DEL 112 (232)
T ss_dssp CS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT----EEEEEES---SHH
T ss_pred CC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC----ceeeeCC---CHH
Confidence 88 8899975 56788899998899999998766666655555544567789999988432 1223333 788
Q ss_pred HHHHHHHHHHhcCCceEEEcc--cccc----hhhhHHHHHHHHHHHHH---HcCC-CHHH
Q 008576 307 VIVDLLDIGKKIKKTPIVVGN--CTGF----AVNRMFFPYTQAAFLLV---ERGT-DLYL 356 (561)
Q Consensus 307 ~~~~~~~l~~~lGk~~v~v~d--~~G~----i~nrl~~~~~~ea~~l~---~~G~-~~~~ 356 (561)
.++.++.+++.+|..++.+++ .+++ ..++.+.++.++|.+++ ++|+ +++|
T Consensus 113 a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d 172 (232)
T 3dfu_A 113 GETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSD 172 (232)
T ss_dssp HHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence 999999999999999999863 4666 56788888999999998 7887 8888
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=148.70 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=129.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
|+||+|||+|.||.++|..|+++|++|++||+++++++...+ .| +..+++. +.++
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 56 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------LG-------------ARQASSPAEVCA 56 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------HT-------------CEECSCHHHHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHH
Confidence 468999999999999999999999999999999988765331 12 2334454 3468
Q ss_pred CCCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCCC-------C
Q 008576 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV-------M 292 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~~-------~ 292 (561)
+||+||+|+|++..++..++ +++.+.++++++|++.++ .++. ++.+.+.. .|.||+. |+.. .
T Consensus 57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~----~g~~~~~~pv~g~~~~a~~g 131 (287)
T 3pdu_A 57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMST-VDDETSTAIGAAVTA----RGGRFLEAPVSGTKKPAEDG 131 (287)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSC-CCHHHHHHHHHHHHH----TTCEEEECCEECCHHHHHHT
T ss_pred cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCC-CCHHHHHHHHHHHHH----cCCEEEECCccCCHHHHhcC
Confidence 89999999997655554443 667788888887765444 4433 33333321 1444443 2211 2
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHH-
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT- 362 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~- 362 (561)
.+..++.+ +++.++.++++++.+|+.++++++ ..|. ++|+.+. ..++|++.+.+ .|++++++..++.
T Consensus 132 ~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 208 (287)
T 3pdu_A 132 TLIILAAG---DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDA 208 (287)
T ss_dssp CEEEEEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CEEEEEeC---CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34445554 689999999999999999999876 2333 3344332 34689988876 5889999999998
Q ss_pred hc
Q 008576 363 KF 364 (561)
Q Consensus 363 ~~ 364 (561)
+.
T Consensus 209 ~~ 210 (287)
T 3pdu_A 209 GA 210 (287)
T ss_dssp ST
T ss_pred cc
Confidence 44
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=146.97 Aligned_cols=186 Identities=19% Similarity=0.231 Sum_probs=129.9
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
.++||+|||+|.||.++|..|+++|++|++||+++++++... +.| +..++++ +.+
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~~~~e~~ 85 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA-----------ALG-------------ATIHEQARAAA 85 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------TTT-------------CEEESSHHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HCC-------------CEeeCCHHHHH
Confidence 457999999999999999999999999999999999876532 122 2334555 447
Q ss_pred CCCCEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCH--HHHHhhccCccceecccccC-CCC-------CC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFS-PAH-------VM 292 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~r~ig~h~~~-P~~-------~~ 292 (561)
++||+||+|+|++..++ .++. ++.+.+.++++|++.+++.+. .++.+.+.. .|.||+. |+. ..
T Consensus 86 ~~aDvVi~~vp~~~~~~-~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~----~g~~~~~~pv~g~~~~a~~g 160 (320)
T 4dll_A 86 RDADIVVSMLENGAVVQ-DVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGA----LGIAHLDTPVSGGTVGAEQG 160 (320)
T ss_dssp TTCSEEEECCSSHHHHH-HHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH----TTCEEEECCEECHHHHHHHT
T ss_pred hcCCEEEEECCCHHHHH-HHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHH----cCCEEEeCCCcCCHhHHhcC
Confidence 89999999999765554 4444 666778888877654443332 234333321 1445542 221 23
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHH-
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT- 362 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~- 362 (561)
.+..++.+ ++++++.++++++.+ +.++++++ ..|. ++|+++. ..++|++.+.+ .|++++++..++.
T Consensus 161 ~l~i~~gg---~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~ 236 (320)
T 4dll_A 161 TLVIMAGG---KPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITG 236 (320)
T ss_dssp CEEEEEES---CHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTT
T ss_pred CeeEEeCC---CHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 55666666 688999999999999 88888875 3343 3444433 34789998876 5899999999987
Q ss_pred hc
Q 008576 363 KF 364 (561)
Q Consensus 363 ~~ 364 (561)
+.
T Consensus 237 ~~ 238 (320)
T 4dll_A 237 GF 238 (320)
T ss_dssp ST
T ss_pred cc
Confidence 44
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=144.75 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=133.8
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++||+|||+ |.||.+||..|+++|++|++||++++.++... +.| +..++..+.+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~~~~ 66 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQ-----------GMG-------------IPLTDGDGWID 66 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHH-----------HTT-------------CCCCCSSGGGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------hcC-------------CCcCCHHHHhc
Confidence 469999999 99999999999999999999999998776532 112 11222335578
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--------CCC----
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VMP---- 293 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--------~~~---- 293 (561)
+||+||+|+|++ ...++++++.+.++++++|++.+++.+++.+.+ .....++++.||+.|.. ...
T Consensus 67 ~aDvVi~av~~~--~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~ 143 (286)
T 3c24_A 67 EADVVVLALPDN--IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG 143 (286)
T ss_dssp TCSEEEECSCHH--HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred CCCEEEEcCCch--HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence 999999999954 367888999988899999988666666666654 33346899999998765 222
Q ss_pred ----eEEEEeCCCCcHHHHHHHHHHHHhcCC---ceEEEcc-cccch----hhhHHHHH---HHHHHHHH--HcCCCHHH
Q 008576 294 ----LLEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGFA----VNRMFFPY---TQAAFLLV--ERGTDLYL 356 (561)
Q Consensus 294 ----lveiv~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~~G~i----~nrl~~~~---~~ea~~l~--~~G~~~~~ 356 (561)
...++.+..++++.++.+.++++.+|. .++.+++ ..+.+ .|-...++ +.|++... ..|+++++
T Consensus 144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~ 223 (286)
T 3c24_A 144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA 223 (286)
T ss_dssp SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 233433334688999999999999999 7888863 22322 33333333 34544332 24888877
Q ss_pred HHHHHH
Q 008576 357 IDRAIT 362 (561)
Q Consensus 357 ID~a~~ 362 (561)
+-.++.
T Consensus 224 ~~~~~~ 229 (286)
T 3c24_A 224 ALDFMI 229 (286)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=170.43 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCcc--
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPC-- 536 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~-- 536 (561)
..++.||++.+++||++.++++|+ ++++||.++ .++|||+ |||+++|.+|+|..+++++.+.+.++++|.|+
T Consensus 496 ~Gfi~Nril~~~~~Ea~~l~~~G~--~~~~id~~~-~~~G~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~~~ 569 (715)
T 1wdk_A 496 PGFLVNRVLFPYFGGFAKLVSAGV--DFVRIDKVM-EKFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRR 569 (715)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSC
T ss_pred CChhhhHHHHHHHHHHHHHHHCCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCCccCCChH
Confidence 458999999999999999999994 699999999 8999999 99999999999999999999988888888898
Q ss_pred HHHHHHHHcCCCcccCCccccccC
Q 008576 537 AFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 537 ~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
++|++|+++|++|+|+|+|||+|+
T Consensus 570 ~~l~~~v~~g~lG~k~g~GfY~y~ 593 (715)
T 1wdk_A 570 SAIDALYEAKRLGQKNGKGFYAYE 593 (715)
T ss_dssp CHHHHHHHTTCCBTTTTBSSSEEC
T ss_pred HHHHHHHhCchhhhcCCcEEEecc
Confidence 999999999999999999999994
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=145.36 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=133.9
Q ss_pred cceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
.++||+|||+|.||.+||..|+++| ++|++||++++ .++... +.| +..++
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-----------~~G-------------~~~~~ 76 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-----------KMG-------------VKLTP 76 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-----------HHT-------------CEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-----------HcC-------------CEEeC
Confidence 3468999999999999999999999 89999999985 554421 112 22233
Q ss_pred cc-cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccC---ccceecccccCCCCCCCeE
Q 008576 220 DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS---KDRIVGAHFFSPAHVMPLL 295 (561)
Q Consensus 220 ~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~---~~r~ig~h~~~P~~~~~lv 295 (561)
+. +.+.+||+||+||| +....+++.++.+.++++++|++.++++++..+.+.+.. ..++++.|++.|.......
T Consensus 77 ~~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~ 154 (322)
T 2izz_A 77 HNKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGA 154 (322)
T ss_dssp CHHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEE
T ss_pred ChHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCe
Confidence 33 45678999999998 567788899999888889999998888888877766543 4589999999888765554
Q ss_pred EEE-eCCCCcHHHHHHHHHHHHhcCCceEEEcccc----cc--hhhhHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008576 296 EIV-RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT----GF--AVNRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (561)
Q Consensus 296 eiv-~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~----G~--i~nrl~~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (561)
.++ .++.++++.++.+.++++.+|..+++..+.- +. ..+..+. .+.|++. ....|+++++.-.++.
T Consensus 155 ~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~~ 229 (322)
T 2izz_A 155 TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLGA 229 (322)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 544 6777788999999999999997654432210 10 1122222 2334433 2446887776665554
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=168.65 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCC-CCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF-FKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~ 537 (561)
..++.||++.+++||++.++++|+ ++++||.++ .++|||+ |||+++|.+|+|..+++++.+.+.++++ |.| +
T Consensus 494 ~Gfi~Nril~~~~~Ea~~l~~~G~--~~e~id~~~-~~~g~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~-~ 566 (725)
T 2wtb_A 494 TGFAVNRMFFPYTQAAMFLVECGA--DPYLIDRAI-SKFGMPM---GPFRLCDLVGFGVAIATATQFIENFSERTYKS-M 566 (725)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHSGGGCCCC-T
T ss_pred ccHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhchHHHHHHHHHHHHhcCCccCCh-H
Confidence 458999999999999999999994 699999999 8999999 9999999999999999999998888877 888 9
Q ss_pred HHHHHHHcCCCcccCCccccccC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+|++|+++|++|+|+|+|||+|+
T Consensus 567 ~l~~~v~~g~lG~k~g~GfY~y~ 589 (725)
T 2wtb_A 567 IIPLMQEDKRAGEATRKGFYLYD 589 (725)
T ss_dssp HHHHHHTTC--------------
T ss_pred HHHHHHHCCCceecCCceeEeCC
Confidence 99999999999999999999993
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=168.70 Aligned_cols=98 Identities=15% Similarity=0.059 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC------
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE------ 531 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~------ 531 (561)
+.-||.||++.++++||+++++||+ ++.+||.++. ++|||+ |||+++|.+|+|+.+++.+.+...++.
T Consensus 495 ~pGFi~NRi~~~~~~ea~~l~~eG~--~~~~id~a~~-~~G~pm---GPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~ 568 (742)
T 3zwc_A 495 CYGFVGNRMLAPYYNQGFFLLEEGS--KPEDVDGVLE-EFGFKM---GPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTP 568 (742)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCC
T ss_pred CCCccHHHHhhHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---ChHHHHHHhCHHHHHHHHHHHHhhCcccCccch
Confidence 4469999999999999999999996 4999999885 799999 999999999999999999887543322
Q ss_pred -----CCCccHHHHHHHHcCCCcccCCccccccCC
Q 008576 532 -----FFKPCAFLAERAGKGATLVRNLKLFFSYLE 561 (561)
Q Consensus 532 -----~~~p~~~l~~~~~~g~~g~~~g~Gfy~y~~ 561 (561)
.+.++|++++|+++|++|+|||+|||+|++
T Consensus 569 ~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~ 603 (742)
T 3zwc_A 569 VRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDK 603 (742)
T ss_dssp TTEETTEECCCHHHHHHTTTCCBGGGTBSSSEESS
T ss_pred hhhcccccccHHHHHHHHCCCccccCCCeeEECCC
Confidence 234678999999999999999999999964
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=150.27 Aligned_cols=204 Identities=17% Similarity=0.192 Sum_probs=137.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhC-CC-cEEEEeCCHH----HHHHHHHHHHHHHHHHHHcCCC--CHHHHHh------h
Q 008576 146 RVKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEK----FLEAGIGRVRANLQSRVKKGKM--TQEKFEK------T 211 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~----~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~------~ 211 (561)
+++||+|||+|.||.++|..|+++ |+ +|++||++++ +++...+. ...+ .....+. .
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g----------~~~i~~~e~gl~~l~~~~~~ 86 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRG----------ESPLKGEEPGLEELIGKVVK 86 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTT----------CCCSSCCGGGHHHHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhc----------CCCccccCCCHHHHHHhhcc
Confidence 468999999999999999999999 99 9999999999 77653310 0001 0111111 1
Q ss_pred hccccccccccccCCCCEEEEeccCCh----------hhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhh-c-cC
Q 008576 212 ISLLTGVLDYESFKDVDMVIEAIIENV----------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGER-T-YS 276 (561)
Q Consensus 212 ~~~i~~~~~~~~l~~aDlVieav~e~~----------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~-~-~~ 276 (561)
.+++.++++.+.+++||+||+|||++. .......+.+.+.++++++|+ +.||+++. ++... + ..
T Consensus 87 ~g~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~~ 165 (478)
T 3g79_A 87 AGKFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEEE 165 (478)
T ss_dssp TTCEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHHH
T ss_pred cCCeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHHh
Confidence 356788888888999999999998753 235566788999999999775 55666653 23221 1 00
Q ss_pred ccceec--ccc-cCCCCCCCe---------EEEEeCCCCcHHHHHHHHHHHHhc-CCceEEEccc-cc---chhhhHHH-
Q 008576 277 KDRIVG--AHF-FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGNC-TG---FAVNRMFF- 338 (561)
Q Consensus 277 ~~r~ig--~h~-~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d~-~G---~i~nrl~~- 338 (561)
...-.+ .++ ++|....+. ..|+.| .+++..+.++++++.+ ++.++++++. .+ .++|+++.
T Consensus 166 ~g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a 243 (478)
T 3g79_A 166 SGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRD 243 (478)
T ss_dssp HCCCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCceeEEeCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHH
Confidence 000001 111 256543221 124554 3678889999999999 8888888752 23 24565554
Q ss_pred ---HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 339 ---PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 339 ---~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
+++||+..+.+ .|+++.++-.++.
T Consensus 244 ~~Ia~~nE~~~l~e~~GiD~~~v~~~~~ 271 (478)
T 3g79_A 244 LQIAAINQLALYCEAMGINVYDVRTGVD 271 (478)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 45799999887 5899999998887
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-14 Score=151.25 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=139.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~ 220 (561)
.+||+|||+|.||.++|..|+++|++|++||+++++++...+.. .....++ .+.. .+++.++++
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~---------~~i~e~g-l~~~l~~~~~~~~l~~ttd 77 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGG---------VPIHEPG-LKEVIARNRSAGRLRFSTD 77 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC---------CSSCCTT-HHHHHHHHHHTTCEEEECC
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCC---------CCcCCCC-HHHHHHHhcccCCEEEECC
Confidence 46999999999999999999999999999999999887644210 0000111 1111 245777888
Q ss_pred cc-ccCCCCEEEEeccC--------ChhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhcc----Cccc--eec
Q 008576 221 YE-SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY----SKDR--IVG 282 (561)
Q Consensus 221 ~~-~l~~aDlVieav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~----~~~r--~ig 282 (561)
++ .+++||+||+|||. |+....++++++.++++++++|+ +.|++++. .+.+.+. .+ + .-.
T Consensus 78 ~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV-~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~ 155 (478)
T 2y0c_A 78 IEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIV-DKSTVPVGTAERVRAAVAEELAKR-GGDQMF 155 (478)
T ss_dssp HHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHHHHT-TCCCCE
T ss_pred HHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEE-EeCCcCCCchHHHHHHHHHHhcCC-CCCccE
Confidence 74 58899999999997 44788999999999999999875 45676553 2222221 11 1 111
Q ss_pred ccccCCCCCCCeE---------EEEeCCCCcH----HHHHHHHHHHHhcCC--ceEEEccc-----ccchhhhHH---HH
Q 008576 283 AHFFSPAHVMPLL---------EIVRTNQTSP----QVIVDLLDIGKKIKK--TPIVVGNC-----TGFAVNRMF---FP 339 (561)
Q Consensus 283 ~h~~~P~~~~~lv---------eiv~~~~t~~----e~~~~~~~l~~~lGk--~~v~v~d~-----~G~i~nrl~---~~ 339 (561)
.+.++|....+.. .++.|.. ++ +..+.+.++++.+++ .++++.+. .+++.|.+. ..
T Consensus 156 ~v~~~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia 234 (478)
T 2y0c_A 156 SVVSNPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRIS 234 (478)
T ss_dssp EEEECCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 2455676554333 3444432 33 788999999998775 56776642 345667655 45
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 340 ~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
+++|+..+.+ .|++++++..++.
T Consensus 235 ~~nE~~~la~~~Gid~~~v~~~i~ 258 (478)
T 2y0c_A 235 FMNELANLADRFGADIEAVRRGIG 258 (478)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHh
Confidence 6899999987 5889999998885
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=136.39 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=114.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
+||+|||+|.||.++|..|+++| ++|++||+++++++...+. .| +..+++. +.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~- 56 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH- 56 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-
Confidence 48999999999999999999999 9999999999887653311 12 2233444 457
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCC-eEEEEeCCCCc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTS 304 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~~t~ 304 (561)
+||+||+|+| .....+++.++.+ + +++|++.++++++..+.+.++.+.+++..++..|..... ...++.+..++
T Consensus 57 ~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~ 131 (263)
T 1yqg_A 57 SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS 131 (263)
T ss_dssp TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence 9999999999 4555677776655 4 889999889999888888776656788886555655543 45677777789
Q ss_pred HHHHHHHHHHHHhcCCceEEEc
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
++.++.+.++++.+|+.+ .++
T Consensus 132 ~~~~~~~~~l~~~~g~~~-~~~ 152 (263)
T 1yqg_A 132 ETDRRIADRIMKSVGLTV-WLD 152 (263)
T ss_dssp HHHHHHHHHHHHTTEEEE-ECS
T ss_pred HHHHHHHHHHHHhCCCEE-EeC
Confidence 999999999999999765 665
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=145.22 Aligned_cols=153 Identities=14% Similarity=0.202 Sum_probs=115.9
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-cc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 224 (561)
.++||+|||+|.||.+||..|.++|++|++||++++.++.+. +.|. ..+++++ .+
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~G~-------------~~~~~~~e~~ 62 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAV-----------DEGF-------------DVSADLEATL 62 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH-----------HTTC-------------CEESCHHHHH
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-------------eeeCCHHHHH
Confidence 357999999999999999999999999999999998876543 2332 1122332 23
Q ss_pred ----CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCCC-------
Q 008576 225 ----KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV------- 291 (561)
Q Consensus 225 ----~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~------- 291 (561)
.+||+||+||| +.....+++++.++ ++++||++.+|... +..+.+... ..+|++.||+.....
T Consensus 63 ~~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~ 138 (341)
T 3ktd_A 63 QRAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASM 138 (341)
T ss_dssp HHHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCC
T ss_pred HhcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhh
Confidence 35899999999 45677888999886 78888876555432 345555443 478999999876531
Q ss_pred -----CCeEEEEeCCCCcHH--------HHHHHHHHHHhcCCceEEEc
Q 008576 292 -----MPLLEIVRTNQTSPQ--------VIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 292 -----~~lveiv~~~~t~~e--------~~~~~~~l~~~lGk~~v~v~ 326 (561)
...+.+++++.++++ .++.+.++++.+|..++.++
T Consensus 139 ~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~ 186 (341)
T 3ktd_A 139 DGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSR 186 (341)
T ss_dssp SSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred hHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeC
Confidence 235678888878888 89999999999999999886
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-14 Score=139.28 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=119.7
Q ss_pred ccceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 145 RRVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
+.++||+|||+|.||.++|..|+++ |++|++||++++.++.+. +.|... ..++++
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~ 61 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-----------ERGIVD-----------EATADFK 61 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-----------HTTSCS-----------EEESCTT
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-----------HcCCcc-----------cccCCHH
Confidence 4567999999999999999999988 679999999998776532 223211 123444
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhh-cCCCceeeecCCCCC--HHHHHhhccC-ccceeccccc------CCCC-
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFF------SPAH- 290 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~------~P~~- 290 (561)
+.+.+||+||+|||.. ...++++++.+. ++++++|++.+++.. ...+.+.++. ..++++.||+ .|..
T Consensus 62 ~~~~~aDvVilavp~~--~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a 139 (290)
T 3b1f_A 62 VFAALADVIILAVPIK--KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAA 139 (290)
T ss_dssp TTGGGCSEEEECSCHH--HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSC
T ss_pred HhhcCCCEEEEcCCHH--HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHh
Confidence 3578999999999954 447888899888 888988875444322 2566666654 6789999998 4443
Q ss_pred -----CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 291 -----VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 291 -----~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
....+.++++..++++.++.+.++++.+|..++.+++
T Consensus 140 ~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 181 (290)
T 3b1f_A 140 NVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA 181 (290)
T ss_dssp CTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred hHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 2456788888888899999999999999998887763
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-13 Score=133.24 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=115.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||.++|..|.+.|++|++||++++.++... +.|... ..+++++++.+|
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~~~~~ 58 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLVD-----------EAGQDLSLLQTA 58 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGGTTC
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------hCCCCc-----------cccCCHHHhCCC
Confidence 4899999999999999999999999999999998776532 223210 123444444889
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC------------CCCeE
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lv 295 (561)
|+||+|+| .....++++++.+.++++++|++. ++.....+........++++.||+.... ....+
T Consensus 59 D~vi~av~--~~~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~ 135 (279)
T 2f1k_A 59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135 (279)
T ss_dssp SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred CEEEEECC--HHHHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcE
Confidence 99999999 456778889998888889988764 5555443333222223899999875211 23467
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.++++..++++..+.+.++++.+|..++.+++
T Consensus 136 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 167 (279)
T 2f1k_A 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP 167 (279)
T ss_dssp EEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 78888778999999999999999998888875
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=142.07 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=90.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 159 llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 202 (258)
T 4fzw_A 159 MVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHS-P----------------------------------- 202 (258)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus 203 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 256 (258)
T 4fzw_A 203 LALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK 256 (258)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence 377889999999999999999999999999999999999999999999988654
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=141.80 Aligned_cols=98 Identities=20% Similarity=0.159 Sum_probs=90.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 155 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 198 (254)
T 3hrx_A 155 LLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGP-T----------------------------------- 198 (254)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HhhcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccc-h-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|+..
T Consensus 199 ~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 252 (254)
T 3hrx_A 199 RAYALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ 252 (254)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 377789999999999999999999999999999999999999999999988653
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-14 Score=151.07 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=97.0
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHHH
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLAD 375 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~--~~~~ID~a~~-~~G~~~---GPf~~~D 375 (561)
.+++++.+.+..+...+|+.++.+ .+|+|+||++.++++||++++++|+ +++|||.+|+ |+|||+ |||+++|
T Consensus 331 ~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D 408 (463)
T 1zcj_A 331 KPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA 408 (463)
T ss_dssp EECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence 468999998888888888665543 3799999999999999999999998 5999999999 999998 9999999
Q ss_pred HhchHHHHHHHhhhHhhCCC--CCcccchHHHHHHCC
Q 008576 376 LVGFGVAIATGMQFIENFPE--RTYKSMIIPIMQEDK 410 (561)
Q Consensus 376 ~~Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~v~~G 410 (561)
.+|+|+++++++.|++.+++ ++.|+++|++|+++|
T Consensus 409 ~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G 445 (463)
T 1zcj_A 409 SVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 445 (463)
T ss_dssp HHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTT
T ss_pred HhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcC
Confidence 99999999999999999998 566899999999987
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=138.50 Aligned_cols=175 Identities=10% Similarity=0.087 Sum_probs=118.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-cc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 224 (561)
+.+||+|||+|.||.++|..|+++|++|++||+++++++... +.| +...++++ .+
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~e~~ 76 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE-----------REG-------------IAGARSIEEFC 76 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------TTT-------------CBCCSSHHHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HCC-------------CEEeCCHHHHH
Confidence 347999999999999999999999999999999998876533 222 22334443 35
Q ss_pred CCC---CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhcc-CccceecccccCCCC---CCCeE
Q 008576 225 KDV---DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTY-SKDRIVGAHFFSPAH---VMPLL 295 (561)
Q Consensus 225 ~~a---DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~P~~---~~~lv 295 (561)
.++ |+||.|||.+ ...+++.++.+.+++++||++.+++.+.+ ++.+.+. +..+|+....+.++. ..+
T Consensus 77 ~~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-- 152 (358)
T 4e21_A 77 AKLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-- 152 (358)
T ss_dssp HHSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC--
T ss_pred hcCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC--
Confidence 566 9999999977 56677889999999999988776665533 3444332 222333321111111 122
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcC--------------------CceEEEcc-cccch---hhhHHH----HHHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIK--------------------KTPIVVGN-CTGFA---VNRMFF----PYTQAAFLL 347 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lG--------------------k~~v~v~d-~~G~i---~nrl~~----~~~~ea~~l 347 (561)
.++.+ .+++.++.++++++.+| +.++++++ ..|.. +|+.+. ..+.|++.+
T Consensus 153 ~im~G--G~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~l 230 (358)
T 4e21_A 153 CLMIG--GEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNI 230 (358)
T ss_dssp EEEEE--SCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeec--CCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 36899999999999999 56778875 45554 333332 235788888
Q ss_pred HHc
Q 008576 348 VER 350 (561)
Q Consensus 348 ~~~ 350 (561)
.+.
T Consensus 231 a~~ 233 (358)
T 4e21_A 231 LHH 233 (358)
T ss_dssp HHT
T ss_pred HHh
Confidence 875
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=137.22 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=126.8
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
.++||+|||+|.||.+||..|+++|++|++||+++++++... +.| +...+++ +.+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~ 63 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALV-----------AAG-------------AHLCESVKAAL 63 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH-----------HHT-------------CEECSSHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCC-------------CeecCCHHHHH
Confidence 357999999999999999999999999999999998877633 112 1223444 446
Q ss_pred CCCCEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCC--HHHHHhhcc-CccceecccccC-CCC--CCCeEE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTID--LNLIGERTY-SKDRIVGAHFFS-PAH--VMPLLE 296 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~-~~~r~ig~h~~~-P~~--~~~lve 296 (561)
++||+||+|+|++..++. ++. .+... .++++|++.++..+ ..++.+.+. ...+|+....+. |+. ...++.
T Consensus 64 ~~aDvVi~~vp~~~~~~~-v~~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i 141 (306)
T 3l6d_A 64 SASPATIFVLLDNHATHE-VLGMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS 141 (306)
T ss_dssp HHSSEEEECCSSHHHHHH-HHTSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred hcCCEEEEEeCCHHHHHH-Hhcccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence 789999999997655544 444 55544 56776664433333 224444332 223344332221 111 123444
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEE--cc--cccchhhhHHH---HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVV--GN--CTGFAVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v--~d--~~G~i~nrl~~---~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
++.+ ++++++.++++++.+|..++++ ++ ..|.+++.++. ..++|++.+.+ .|++++++..++.
T Consensus 142 ~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 212 (306)
T 3l6d_A 142 IHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLL 212 (306)
T ss_dssp EEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5555 6899999999999998899999 74 46677773332 34679988876 5899999999887
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-13 Score=134.64 Aligned_cols=193 Identities=14% Similarity=0.110 Sum_probs=124.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l 224 (561)
++||+|||+|.||.++|..|+++| ++|++||++++..+++.+. .+...+.| + .+ +..+.+
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~----~~~~~~~g-------------~-~~~s~~e~~ 85 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGAL----RARAAELG-------------V-EPLDDVAGI 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHH----HHHHHHTT-------------C-EEESSGGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHH----HHHHHHCC-------------C-CCCCHHHHH
Confidence 368999999999999999999999 9999999997321111111 11111222 1 22 233557
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccC-ccceecccccCC--CCCCCeEEEEe
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYS-KDRIVGAHFFSP--AHVMPLLEIVR 299 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~-~~r~ig~h~~~P--~~~~~lveiv~ 299 (561)
++||+||.|||++... +.+.++.+.++++++|++.++..+.+ ++.+.+.. ..+|+....+.| .....+..++.
T Consensus 86 ~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vg 163 (317)
T 4ezb_A 86 ACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA 163 (317)
T ss_dssp GGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEE
T ss_pred hcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEe
Confidence 8999999999976544 34588888889999887655433322 44444422 223333211222 22345666777
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEEEcccccc-----hhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHHhc
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAITKF 364 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~-----i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~~~ 364 (561)
++. + +.++++++.+|+.++.+++.+|. ++|+++. ..++|++.+.+ .|++++.++.+..+.
T Consensus 164 g~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~ 233 (317)
T 4ezb_A 164 GRR---A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF 233 (317)
T ss_dssp STT---H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 743 2 78899999999999999864452 4444433 45789999886 588886565555443
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-14 Score=141.85 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=89.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 175 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 218 (274)
T 4fzw_C 175 LALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQP-T----------------------------------- 218 (274)
T ss_dssp HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus 219 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~ 272 (274)
T 4fzw_C 219 FGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT 272 (274)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence 377889999999999999999999999999999999999999999999988653
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-13 Score=131.08 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=115.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++||+|||+|.||..++..|.+.|++|.+||+++++++...+. .| +...+++ +.+.
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~~ 59 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA-------------LPYAMSHQDLID 59 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT-------------CCBCSSHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHH----------cC-------------CEeeCCHHHHHh
Confidence 4699999999999999999999999999999999887653311 02 1223344 3467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCC-eEEEEeCCCCc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTS 304 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~~t~ 304 (561)
++|+||+|+| .....+++.++ .++++|++.+++++++.+.+.+....+++..||..|..... .+.++++..++
T Consensus 60 ~~D~Vi~~v~--~~~~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~ 133 (259)
T 2ahr_A 60 QVDLVILGIK--PQLFETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS 133 (259)
T ss_dssp TCSEEEECSC--GGGHHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred cCCEEEEEeC--cHhHHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence 8999999998 33445555543 47788888888899888888776555788888877776544 55677787789
Q ss_pred HHHHHHHHHHHHhcCCceEEEcc
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
++.++.++++++.+| .++.+++
T Consensus 134 ~~~~~~~~~ll~~~G-~~~~~~~ 155 (259)
T 2ahr_A 134 QELQARVRDLTDSFG-STFDISE 155 (259)
T ss_dssp HHHHHHHHHHHHTTE-EEEECCG
T ss_pred HHHHHHHHHHHHhCC-CEEEecH
Confidence 999999999999999 5666664
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.3e-13 Score=131.17 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=115.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
|+||+|||+|.||.++|..|+..|+ +|++||++++.++.+. +.|... ..++++ +.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~~ 58 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAKV 58 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGG
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCcc-----------cccCCHHHH
Confidence 4689999999999999999999999 9999999998776532 223211 123344 45
Q ss_pred cC-CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCC----------
Q 008576 224 FK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH---------- 290 (561)
Q Consensus 224 l~-~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~---------- 290 (561)
+. +||+||+|+|.. ...+++.++.+.++++++|++.++... ...+.+.++. ++++.||+.+..
T Consensus 59 ~~~~aDvVilavp~~--~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~ 134 (281)
T 2g5c_A 59 EDFSPDFVMLSSPVR--TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN 134 (281)
T ss_dssp GGTCCSEEEECSCHH--HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred hcCCCCEEEEcCCHH--HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence 77 999999999954 556788888888888887765443322 3455555532 488889876421
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
....+.++++..++++..+.+.++++.+|..++.+++
T Consensus 135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 173 (281)
T 2g5c_A 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP 173 (281)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 3445778888788999999999999999998888774
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.5e-14 Score=141.59 Aligned_cols=188 Identities=16% Similarity=0.169 Sum_probs=132.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++||+|||+|.||..+|..|++.|++|++||++++.++... +.|. ....+. +.+.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~-------------~~~~~~~~~~~ 85 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI-----------QEGA-------------RLGRTPAEVVS 85 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHH-----------HTTC-------------EECSCHHHHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HcCC-------------EEcCCHHHHHh
Confidence 57899999999999999999999999999999988766532 1221 122333 4467
Q ss_pred CCCEEEEeccCChhhHHHHHHH---HHhhcCCCceeeecCCCC--CHHHHHhhcc-CccceecccccCCC---CCCCeEE
Q 008576 226 DVDMVIEAIIENVSLKQQIFAD---LEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPA---HVMPLLE 296 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~---l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~~P~---~~~~lve 296 (561)
++|+||+|+|+...++. ++.+ +.+.+.++++|++.++.. ...++.+.+. .+.++++.++++++ ....++.
T Consensus 86 ~~DvVi~av~~~~~~~~-v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~ 164 (316)
T 2uyy_A 86 TCDITFACVSDPKAAKD-LVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 164 (316)
T ss_dssp HCSEEEECCSSHHHHHH-HHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred cCCEEEEeCCCHHHHHH-HHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEE
Confidence 89999999997555544 4443 336677888776443332 2445666553 45678887776432 2355666
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-ccc----chhhhH---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG----FAVNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G----~i~nrl---~~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
++++ +++.++.+.++++.+|+.++++++ ..+ .+.|.+ +..++.|++.+.+ .|+++++++.++.
T Consensus 165 ~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~ 236 (316)
T 2uyy_A 165 LAAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN 236 (316)
T ss_dssp EEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EeCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666 578899999999999998888865 222 245555 3456789988865 6899999998887
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-13 Score=138.73 Aligned_cols=201 Identities=10% Similarity=0.068 Sum_probs=132.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVL 219 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~ 219 (561)
+-.|..|||+|.||.++|.+|+++||+|++||+++++++...+. ......+ ..++. .+++.+++
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g---------~~pi~ep-gl~~ll~~~~~~g~l~~tt 79 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNG---------QISIEEP-GLQEVYEEVLSSGKLKVST 79 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT---------CCSSCCT-THHHHHHHHHHTTCEEEES
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC---------CCCcCCC-CHHHHHHhhcccCceEEeC
Confidence 34699999999999999999999999999999999998874421 0000111 01111 24566676
Q ss_pred cccccCCCCEEEEeccCChh----------hHHHHHHHHHhhcCCCceeeecCCCCCHHH---HHhhc-c-Cccce-ecc
Q 008576 220 DYESFKDVDMVIEAIIENVS----------LKQQIFADLEKYCPPHCILASNTSTIDLNL---IGERT-Y-SKDRI-VGA 283 (561)
Q Consensus 220 ~~~~l~~aDlVieav~e~~~----------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~-~-~~~r~-ig~ 283 (561)
+ +++||+||.|||.... ......+.+.+.++++++|+ ..||+++.. +...+ . .+.++ ...
T Consensus 80 d---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~e~~g~~~~~d~ 155 (431)
T 3ojo_A 80 T---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVIENLGFTIGEDI 155 (431)
T ss_dssp S---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHHHTTTCCBTTTE
T ss_pred c---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHHHHcCCCcCCCe
Confidence 6 4589999999987552 34566678999999999776 456666543 22221 1 11110 001
Q ss_pred cc-cCCCCCCCe---------EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHH----HHHHHHH
Q 008576 284 HF-FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAF 345 (561)
Q Consensus 284 h~-~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~----~~~~ea~ 345 (561)
++ ++|....+. ..|+.| .+++..+.++++++.+++.++++++ ..+. ++|+++. +++||+.
T Consensus 156 ~v~~~Pe~~~~G~A~~~~~~p~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~ 233 (431)
T 3ojo_A 156 YLVHCPERVLPGKILEELVHNNRIIGG--VTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELT 233 (431)
T ss_dssp EEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCcCCCcchhhcccCCCEEEEe--CCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 256433211 134555 2689999999999999988877764 2333 4566655 4579999
Q ss_pred HHHH-cCCCHHHHHHHHH
Q 008576 346 LLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 346 ~l~~-~G~~~~~ID~a~~ 362 (561)
.+.+ .|+++.++-.++.
T Consensus 234 ~l~e~~GiD~~~v~~~~~ 251 (431)
T 3ojo_A 234 KICNNLNINVLDVIEMAN 251 (431)
T ss_dssp HHHHHTTCCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHc
Confidence 9887 5899999998886
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=136.34 Aligned_cols=185 Identities=17% Similarity=0.182 Sum_probs=129.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
.+||+|||+|.||..++..|+..|++|++||++++.++... +.| +...+++ +.+.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~ 59 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVV-----------AQG-------------AQACENNQKVAA 59 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------TTT-------------CEECSSHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence 35899999999999999999999999999999998776532 112 2223344 3467
Q ss_pred CCCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceeccccc-CCCCC-------CC
Q 008576 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~-~P~~~-------~~ 293 (561)
++|+||+|+|.+..++..+. .++.+.++++++|++.+++.+ ..++.+.+... +.||+ .|... ..
T Consensus 60 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g~ 135 (301)
T 3cky_A 60 ASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK----GIDYVDAPVSGGTKGAEAGT 135 (301)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHTC
T ss_pred CCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcCC
Confidence 89999999997655544443 277788889999888777663 44666555321 33333 23221 22
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccch----hhhH---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA----VNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i----~nrl---~~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
+..++.+ +++.++.+.++++.+|..++++++ ..|.. .|.+ +...+.|++.+.. .|+++++++.++.
T Consensus 136 ~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 210 (301)
T 3cky_A 136 LTIMVGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIG 210 (301)
T ss_dssp EEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444454 688999999999999998887764 34433 4444 3345789988765 6899999888876
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-13 Score=139.27 Aligned_cols=198 Identities=18% Similarity=0.245 Sum_probs=131.0
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh----cccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI----SLLTGVLD 220 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~----~~i~~~~~ 220 (561)
..++||+|||+|.||.++|..|++ |++|++||+++++++...+.. ..+.....++.+ .++.++++
T Consensus 34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~----------~~i~e~~l~~ll~~~~~~l~~ttd 102 (432)
T 3pid_A 34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI----------SPIVDKEIQEYLAEKPLNFRATTD 102 (432)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESC
T ss_pred cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC----------CccccccHHHHHhhccCCeEEEcC
Confidence 346799999999999999999998 999999999999887644210 011111122221 35777888
Q ss_pred c-cccCCCCEEEEeccCCh---------hhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC
Q 008576 221 Y-ESFKDVDMVIEAIIENV---------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS 287 (561)
Q Consensus 221 ~-~~l~~aDlVieav~e~~---------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~ 287 (561)
+ +.+++||+||+|||++. .....+++.+.+ ++++++|+ ..|++++. ++.+.+.. . ++. ++
T Consensus 103 ~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~~--~--~v~-~s 175 (432)
T 3pid_A 103 KHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLGI--D--NVI-FS 175 (432)
T ss_dssp HHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHTC--C--CEE-EC
T ss_pred HHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHhh--c--cEe-ec
Confidence 7 56899999999999864 346677788888 88898776 46666653 44444322 1 222 26
Q ss_pred CCCCCCe------E---EEEeCCCCcHHHHHHHHHHHHh--cCC-ceEEEcc-cccc---hhhhHHH----HHHHHHHHH
Q 008576 288 PAHVMPL------L---EIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGN-CTGF---AVNRMFF----PYTQAAFLL 347 (561)
Q Consensus 288 P~~~~~l------v---eiv~~~~t~~e~~~~~~~l~~~--lGk-~~v~v~d-~~G~---i~nrl~~----~~~~ea~~l 347 (561)
|....+. . .|+.| .+++..+.+.+++.. ++. .++.+.+ ..+. ++++.+. +++||+..+
T Consensus 176 Pe~~~~G~A~~~~l~p~rIvvG--~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~l 253 (432)
T 3pid_A 176 PEFLREGRALYDNLHPSRIVIG--ERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSY 253 (432)
T ss_dssp CCCCCTTSHHHHHHSCSCEEES--SCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcchhhhcccCCceEEec--CCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654321 1 24444 245677888888876 443 3455554 2222 4455544 457999998
Q ss_pred HH-cCCCHHHHHHHHH
Q 008576 348 VE-RGTDLYLIDRAIT 362 (561)
Q Consensus 348 ~~-~G~~~~~ID~a~~ 362 (561)
.+ .|+++.++-.++.
T Consensus 254 ae~~GiD~~~v~~~~~ 269 (432)
T 3pid_A 254 AESQGLNSKQIIEGVC 269 (432)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHc
Confidence 86 5899999988885
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.8e-14 Score=133.16 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=112.8
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+.|+||+|||+|.||.++|..|+++|++|++ +|+++++++...+. .+. ....++.+.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~----------~g~------------~~~~~~~~~ 78 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDR----------FGA------------SVKAVELKD 78 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHH----------HTT------------TEEECCHHH
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------hCC------------CcccChHHH
Confidence 4568999999999999999999999999999 99999887653321 010 111233456
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--------------CHHHHHhhccCccceecccccCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--------------DLNLIGERTYSKDRIVGAHFFSPA 289 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--------------~~~~l~~~~~~~~r~ig~h~~~P~ 289 (561)
+.++|+||+|+| .....++++++.+ + ++++|++.+.++ +...+++.++ ..+++..+++.|.
T Consensus 79 ~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~ 153 (220)
T 4huj_A 79 ALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA 153 (220)
T ss_dssp HTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred HhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence 789999999998 5677788888766 4 477888877766 3556676665 4566666655443
Q ss_pred CC---------CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 290 HV---------MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 290 ~~---------~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.. .+...++.+ .+++..+.++++++.+|+.++.+++
T Consensus 154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~ 198 (220)
T 4huj_A 154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT 198 (220)
T ss_dssp HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence 22 123444555 3689999999999999999999875
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-13 Score=139.98 Aligned_cols=203 Identities=15% Similarity=0.138 Sum_probs=133.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHh------hhccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK------TISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~------~~~~i~~~~~~ 221 (561)
-+|+|||+|.||.++|.+|+++||+|++||+++++++...+. ......++ .++ ..+++++++++
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g---------~~~~~epg-l~~~~~~~~~~g~l~~ttd~ 78 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQN---------VMPIYEPG-LDALVASNVKAGRLSFTTDL 78 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTT---------CCSSCCTT-HHHHHHHHHHTTCEEEESCH
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcC---------CCCccCCC-HHHHHHhhcccCCEEEECCH
Confidence 489999999999999999999999999999999988764321 00001111 111 12467788888
Q ss_pred -cccCCCCEEEEeccCChh---------hHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccc-cC
Q 008576 222 -ESFKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHF-FS 287 (561)
Q Consensus 222 -~~l~~aDlVieav~e~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~-~~ 287 (561)
+.+++||+||.|||...+ ..+++++++.+.++++++|++ .|++++. ++.+.+.....-...+. ++
T Consensus 79 ~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~-~STv~pgtt~~l~~~l~e~~~~~d~~v~~~ 157 (446)
T 4a7p_A 79 AEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVT-KSTVPVGTGDEVERIIAEVAPNSGAKVVSN 157 (446)
T ss_dssp HHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEE-CSCCCTTHHHHHHHHHHHHSTTSCCEEEEC
T ss_pred HHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCCCchHHHHHHHHHHHhCCCCCceEEeC
Confidence 568999999999986543 477888999999999998875 4566653 33332211000011111 24
Q ss_pred CCCCCCe---------EEEEeCCCCcHHHHHHHHHHHHhcCCc---eEEEccc-cc---chhhhHHH----HHHHHHHHH
Q 008576 288 PAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKIKKT---PIVVGNC-TG---FAVNRMFF----PYTQAAFLL 347 (561)
Q Consensus 288 P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~lGk~---~v~v~d~-~G---~i~nrl~~----~~~~ea~~l 347 (561)
|....+. ..|+.|. .++++.+.+++++..+++. ++.+++. .+ .++++.+. ++++|...+
T Consensus 158 Pe~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 236 (446)
T 4a7p_A 158 PEFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADL 236 (446)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332211 1233331 3578999999999998875 5777652 22 24555544 457899988
Q ss_pred HH-cCCCHHHHHHHHH
Q 008576 348 VE-RGTDLYLIDRAIT 362 (561)
Q Consensus 348 ~~-~G~~~~~ID~a~~ 362 (561)
.+ .|++++++-.++.
T Consensus 237 ~~~~GiD~~~v~~~~~ 252 (446)
T 4a7p_A 237 CEQVGADVQEVSRGIG 252 (446)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHh
Confidence 86 5899999999986
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-13 Score=133.53 Aligned_cols=185 Identities=18% Similarity=0.301 Sum_probs=127.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||..++..|+..|++|++||++++.++... +.| +...+++ +.+.+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~ 61 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-----------AAG-------------AETASTAKAIAEQ 61 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEECSSHHHHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HCC-------------CeecCCHHHHHhC
Confidence 4899999999999999999999999999999998776532 112 2223444 34678
Q ss_pred CCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCH--HHHHhhccCccceecccccC-CCC------CCCeE
Q 008576 227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFS-PAH------VMPLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~r~ig~h~~~-P~~------~~~lv 295 (561)
+|+||+|+|....++..++ +++.+.++++++|++.+++.+. .++.+.+... |.||+. |.. ....+
T Consensus 62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~pv~~~~~~~~~~~~ 137 (299)
T 1vpd_A 62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK----GVEMLDAPVSGGEPKAIDGTL 137 (299)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT----TCEEEECCEESHHHHHHHTCE
T ss_pred CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEecCCCCHhHHhcCCE
Confidence 9999999996555544333 5677888889988765554442 3565555321 334432 211 01123
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccch---hhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i---~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.++.+. +++.++.+.++++.+|..++++++ ..|.. +++.+. ..++|++.+.. .|+++++++.++.
T Consensus 138 ~~~~~~--~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 211 (299)
T 1vpd_A 138 SVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR 211 (299)
T ss_dssp EEEEES--CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred EEEeCC--CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344332 788999999999999998888864 34543 344444 45789888765 6899999988876
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-14 Score=137.56 Aligned_cols=98 Identities=20% Similarity=0.276 Sum_probs=90.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|++|+..+ +
T Consensus 164 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 207 (263)
T 3moy_A 164 LCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMS------------------------------------R 207 (263)
T ss_dssp HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSC------------------------------------H
T ss_pred HHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~ 261 (263)
T 3moy_A 208 PAGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT 261 (263)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence 488899999999988899999999999999999999999999999999987653
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.4e-14 Score=137.68 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=89.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++|+..+ +
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 209 (265)
T 3kqf_A 166 LIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNG------------------------------------P 209 (265)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC------------------------------------H
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 210 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 262 (265)
T 3kqf_A 210 IAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMY 262 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 47888999999999899999999999999999999999999999999998765
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.8e-13 Score=133.28 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=111.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc---c
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE---S 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~ 223 (561)
++||+|||+|.||..+|..|+++|++|++||++++.++...+ .|............++..+++.+ .
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK-----------NGLIADFNGEEVVANLPIFSPEEIDHQ 71 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECCCEECGGGCCTT
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-----------CCEEEEeCCCeeEecceeecchhhccc
Confidence 469999999999999999999999999999999987765331 12100000000001222222222 2
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhccCccceecc-ccc-----CCCC----CC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGA-HFF-----SPAH----VM 292 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~-h~~-----~P~~----~~ 292 (561)
++++|+||.|+|. ....++++++.+.++++++|++.++++.. ..+.+.++ +.++++. +++ .|.. ..
T Consensus 72 ~~~~d~vi~~v~~--~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~ 148 (316)
T 2ew2_A 72 NEQVDLIIALTKA--QQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD 148 (316)
T ss_dssp SCCCSEEEECSCH--HHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred CCCCCEEEEEecc--ccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence 3489999999995 35678889999999999999888888776 45655554 3367733 332 2211 11
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
..+.++....++++..+.+.++++.+|..+++..|
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d 183 (316)
T 2ew2_A 149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSN 183 (316)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTT
T ss_pred CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchh
Confidence 22345554556889999999999999988777665
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=136.30 Aligned_cols=185 Identities=21% Similarity=0.223 Sum_probs=126.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.++|..|++.|++|++||+++++++... +.| +..+++. +.+.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~ 56 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQ-----------DAG-------------EQVVSSPADVAEK 56 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHH-----------TTT-------------CEECSSHHHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhc
Confidence 3799999999999999999999999999999998766532 112 2233444 34678
Q ss_pred CCEEEEeccCChhhHHHHHHH---HHhhcCCCceeeecCCCCCHHHHHhhccC-ccceecccccC-CCCCC------CeE
Q 008576 227 VDMVIEAIIENVSLKQQIFAD---LEKYCPPHCILASNTSTIDLNLIGERTYS-KDRIVGAHFFS-PAHVM------PLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~---l~~~~~~~~ii~s~tS~~~~~~l~~~~~~-~~r~ig~h~~~-P~~~~------~lv 295 (561)
+|+||+|+|.+..++ .++.+ +.+.++++++|++ +|++++......... +.+ +.+|.+ |.... +.+
T Consensus 57 ~Dvvi~~vp~~~~~~-~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~--g~~~~~~p~~~g~~~a~~~~~ 132 (296)
T 2gf2_A 57 ADRIITMLPTSINAI-EAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM--GAVFMDAPVSGGVGAARSGNL 132 (296)
T ss_dssp CSEEEECCSSHHHHH-HHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT--TCEEEECCEESHHHHHHHTCE
T ss_pred CCEEEEeCCCHHHHH-HHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc--CCEEEEcCCCCChhHHhcCcE
Confidence 999999998654443 45554 3345678888888 888887654432111 111 444443 33211 223
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.++.+ .+++.++.+.++++.+|+.++.+++ ..|. ++|+.+. ..++|++.+.. .|+++++++.++.
T Consensus 133 ~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~ 206 (296)
T 2gf2_A 133 TFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 206 (296)
T ss_dssp EEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44444 3678899999999999998888765 2222 3455443 46789988775 6899999999877
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=135.81 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=90.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (256)
T 3trr_A 157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANG-P----------------------------------- 200 (256)
T ss_dssp HHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus 201 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 254 (256)
T 3trr_A 201 LAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQ 254 (256)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 377889999999998999999999999999999999999999999999987653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-13 Score=139.32 Aligned_cols=202 Identities=15% Similarity=0.119 Sum_probs=133.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~ 221 (561)
+||+|||+|.||.++|..|+++|++|++||+++++++...+.. .....+. .... .+++.+++++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~---------~~i~e~g-l~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGT---------IPIYEPG-LEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTC---------SCCCSTT-HHHHHHHHHHTTSEEEESCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCC---------CcccCCC-HHHHHHhhcccCcEEEECCH
Confidence 5999999999999999999999999999999999887644210 0001111 1111 2457777887
Q ss_pred cc-cCCCCEEEEeccCChh--------hHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccC--ccceecccc--
Q 008576 222 ES-FKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KDRIVGAHF-- 285 (561)
Q Consensus 222 ~~-l~~aDlVieav~e~~~--------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--~~r~ig~h~-- 285 (561)
++ +++||+||+|||.... ...++++++.+.++++++|++. |++++. ++.+.+.. +....+..|
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgt~~~l~~~l~~~~~~~~~~~d~~v 151 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK-STVPVGSYRLIRKAIQEELDKREVLIDFDI 151 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC-SCCCTTHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe-eeCCCcchHHHHHHHHHhccccCcCcceeE
Confidence 64 8999999999987542 6778889999999999988654 355543 33332211 000001111
Q ss_pred -cCCCCCCCe----------EEEEeCCCCcHHHHHHHHHHHHhcCC--ceEEEccc-ccc---hhhhHHH----HHHHHH
Q 008576 286 -FSPAHVMPL----------LEIVRTNQTSPQVIVDLLDIGKKIKK--TPIVVGNC-TGF---AVNRMFF----PYTQAA 344 (561)
Q Consensus 286 -~~P~~~~~l----------veiv~~~~t~~e~~~~~~~l~~~lGk--~~v~v~d~-~G~---i~nrl~~----~~~~ea 344 (561)
++|....+. ..++.+ .+++..+.+++++..+++ .++.+.+. .+. ++++.+. .+++|+
T Consensus 152 ~~~Pe~a~eG~~~~~~~~p~~ivvG~--~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~ 229 (450)
T 3gg2_A 152 ASNPEFLKEGNAIDDFMKPDRVVVGV--DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDV 229 (450)
T ss_dssp EECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EechhhhcccchhhhccCCCEEEEEc--CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245433221 123343 368899999999999987 36666653 222 3444433 457999
Q ss_pred HHHHH-cCCCHHHHHHHHH
Q 008576 345 FLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 345 ~~l~~-~G~~~~~ID~a~~ 362 (561)
..+.+ .|++++++-.++.
T Consensus 230 ~~l~~~~Gid~~~v~~~~~ 248 (450)
T 3gg2_A 230 ANLCERVGADVSMVRLGIG 248 (450)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHc
Confidence 99886 5999999999996
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-14 Score=137.91 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=90.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++|+..+ +
T Consensus 179 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 222 (278)
T 3h81_A 179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMS------------------------------------A 222 (278)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC------------------------------------H
T ss_pred HHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|+..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus 223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~ 276 (278)
T 3h81_A 223 SAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT 276 (278)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 488899999999998899999999999999999999999999999999987653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-13 Score=142.19 Aligned_cols=203 Identities=15% Similarity=0.195 Sum_probs=135.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHhhh-----cccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEKTI-----SLLT 216 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~~-----~~i~ 216 (561)
.++||+|||+|.||.++|..|+++ |++|++||+++++++... .+.. .....+..+ .++.
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~------------~g~~~i~e~~l~~~~~~~~~~~~~ 71 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWN------------SPTLPIYEPGLKEVVESCRGKNLF 71 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTEE
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHh------------CCCCCcCCCCHHHHHHHhhcCCEE
Confidence 357999999999999999999999 899999999998876532 1111 000111111 2456
Q ss_pred ccccc-cccCCCCEEEEeccCChhh-------------HHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccc
Q 008576 217 GVLDY-ESFKDVDMVIEAIIENVSL-------------KQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDR 279 (561)
Q Consensus 217 ~~~~~-~~l~~aDlVieav~e~~~~-------------k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r 279 (561)
+++++ +.+++||+||+|||..... ...+++++.+.++++++|+ ++|+.++. ++.+.+....
T Consensus 72 ~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~g~~~~l~~~l~~~~- 149 (467)
T 2q3e_A 72 FSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT-EKSTVPVRAAESIRRIFDANT- 149 (467)
T ss_dssp EESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEE-ECSCCCTTHHHHHHHHHHHTC-
T ss_pred EECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEE-ECCcCCchHHHHHHHHHHHhC-
Confidence 66676 4578999999999865432 4567788888888888775 44455433 3443332211
Q ss_pred eeccc---ccCCCCCCCeE----------EEEeCCC--CcHHHHHHHHHHHHhc-CCceEEEccc-----ccchhhhHH-
Q 008576 280 IVGAH---FFSPAHVMPLL----------EIVRTNQ--TSPQVIVDLLDIGKKI-KKTPIVVGNC-----TGFAVNRMF- 337 (561)
Q Consensus 280 ~ig~h---~~~P~~~~~lv----------eiv~~~~--t~~e~~~~~~~l~~~l-Gk~~v~v~d~-----~G~i~nrl~- 337 (561)
..+.+ .++|....+.. .++.+.. ++++..+.+.++++.+ |+.++++.+. ..++.|.+.
T Consensus 150 ~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a 229 (467)
T 2q3e_A 150 KPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLA 229 (467)
T ss_dssp CTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHH
Confidence 11222 24555443322 2344433 3788999999999998 7777777642 345566653
Q ss_pred --HHHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 338 --FPYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 338 --~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.++++|+..+.+ .|++++++..++.
T Consensus 230 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~ 257 (467)
T 2q3e_A 230 QRISSINSISALCEATGADVEEVATAIG 257 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 366899999887 5899999999997
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.8e-13 Score=129.54 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=109.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
.+||+|||+|.||.+||..|+++| ++|++||++++. .| +...++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~ 53 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE 53 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence 458999999999999999999999 799999998754 11 1223333
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCC-eEEEEeC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRT 300 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~ 300 (561)
+.+.+||+||+|+|. ....+++.++.+.+ ++++|++.+++++...+.+.++...+++...+..|..... ...++++
T Consensus 54 ~~~~~~D~vi~~v~~--~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~ 130 (262)
T 2rcy_A 54 ELARHCDIIVCAVKP--DIAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN 130 (262)
T ss_dssp HHHHHCSEEEECSCT--TTHHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred HHHhcCCEEEEEeCH--HHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence 346789999999994 46778888888887 5777888999999888877765432443322333443333 3445677
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
+.++++.++.+.++++.+|+ ++.+++
T Consensus 131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~ 156 (262)
T 2rcy_A 131 KNVNSTDKKYVNDIFNSCGI-IHEIKE 156 (262)
T ss_dssp TTCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence 77899999999999999997 777764
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=134.76 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=89.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T 3p5m_A 156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGP-T----------------------------------- 199 (255)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 252 (255)
T 3p5m_A 200 LAFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNF 252 (255)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 37888999999998889999999999999999999999999999999998765
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=134.42 Aligned_cols=167 Identities=13% Similarity=0.117 Sum_probs=113.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
.+||+|||+|.||.++|..|+++|++|++||++++.++...+. ......-++ .....++..++++ +.++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~--------~~~~~~l~g--~~l~~~i~~t~d~~ea~~ 98 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAE--------GVNNRYLPN--YPFPETLKAYCDLKASLE 98 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHH--------SSBTTTBTT--CCCCTTEEEESCHHHHHT
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc--------CCCcccCCC--CccCCCeEEECCHHHHHh
Confidence 4699999999999999999999999999999999887653321 000000000 0012345666777 4578
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH------HHHhhccCccceecccccCCCC------CCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN------LIGERTYSKDRIVGAHFFSPAH------VMP 293 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~------~l~~~~~~~~r~ig~h~~~P~~------~~~ 293 (561)
+||+||+||| ....+++++++.++++++++|++.++++.+. .+.+.++. ..+.- ...|.. ..+
T Consensus 99 ~aDvVilaVp--~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~v--lsgP~~a~ev~~g~p 173 (356)
T 3k96_A 99 GVTDILIVVP--SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAV--ISGPSLATEVAANLP 173 (356)
T ss_dssp TCCEEEECCC--HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEE--EESSCCHHHHHTTCC
T ss_pred cCCEEEECCC--HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEE--EECccHHHHHHcCCC
Confidence 9999999999 4578899999999999999999888877654 23343331 11110 112322 123
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
...++.+ .+++..+.+++++...+..++...|..|
T Consensus 174 t~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g 208 (356)
T 3k96_A 174 TAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIG 208 (356)
T ss_dssp EEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred eEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence 3333333 4788899999999998888888777444
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=135.43 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=89.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 209 (265)
T 3swx_A 166 WMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQA-P----------------------------------- 209 (265)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++.+|++||+|+.
T Consensus 210 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 262 (265)
T 3swx_A 210 LGVQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEF 262 (265)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 37888999999988889999999999999999999999999999999998765
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=134.90 Aligned_cols=97 Identities=22% Similarity=0.217 Sum_probs=89.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 209 (265)
T 3rsi_A 166 MILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNG-P----------------------------------- 209 (265)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 210 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 262 (265)
T 3rsi_A 210 LAVRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARF 262 (265)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 37888999999998889999999999999999999999999999999988765
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-14 Score=137.64 Aligned_cols=98 Identities=29% Similarity=0.378 Sum_probs=89.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++++..+ +
T Consensus 162 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 205 (261)
T 3pea_A 162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKS------------------------------------P 205 (261)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC------------------------------------H
T ss_pred HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus 206 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~ 259 (261)
T 3pea_A 206 ATARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFS 259 (261)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 378889999999888889999999999999999999999999999999987653
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-14 Score=138.59 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=90.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 170 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p----------------------------------- 213 (275)
T 3hin_A 170 MMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNA-P----------------------------------- 213 (275)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|+..+|++++.+...+++++++.|...+..++.|+|+++++++|++||+|+..
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~ 267 (275)
T 3hin_A 214 LTNFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVR 267 (275)
T ss_dssp HHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 377889999999988999999999999999999999999999999999998764
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=135.97 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=126.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++||+|||+|.||..+|..|++.|++|++|| +++.++... +.| +...+++ +.+.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~ 57 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELL-----------SLG-------------AVNVETARQVTE 57 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHH-----------TTT-------------CBCCSSHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHH-----------HcC-------------CcccCCHHHHHh
Confidence 4699999999999999999999999999999 887665422 112 1223344 3467
Q ss_pred CCCEEEEeccCChhhHHHHHH---HHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccC-CCC-------CC
Q 008576 226 DVDMVIEAIIENVSLKQQIFA---DLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAH-------VM 292 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~---~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~-P~~-------~~ 292 (561)
++|+||+|+|.+..++ .++. ++.+.++++++|++.+++.+ ..++.+.+.. .|.||++ |.. ..
T Consensus 58 ~~D~vi~~vp~~~~~~-~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~----~g~~~~~~p~~~~~~~a~~g 132 (295)
T 1yb4_A 58 FADIIFIMVPDTPQVE-DVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNE----MGADYLDAPVSGGEIGAREG 132 (295)
T ss_dssp TCSEEEECCSSHHHHH-HHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHT----TTEEEEECCEESHHHHHHHT
T ss_pred cCCEEEEECCCHHHHH-HHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEEccCCCCHHHHHcC
Confidence 8999999999665444 4444 67777888998876655533 3456555533 1555553 321 12
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.+..++.+ +++.++.+.++++.+|..++++++ ..|. ++++.+. ..++|++.+.+ .|+++++++.++.
T Consensus 133 ~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 208 (295)
T 1yb4_A 133 TLSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALM 208 (295)
T ss_dssp CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34545554 788999999999999998888865 3443 2333332 46789988876 5899999998886
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=136.60 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=89.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 162 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (268)
T 3i47_A 162 LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNA-P----------------------------------- 205 (268)
T ss_dssp HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHH-HHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRA-GLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~-~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.|...+|++++.....++++ .++.|.+.+..++.|+|+++++.+|++||+|+...
T Consensus 206 ~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~ 261 (268)
T 3i47_A 206 EAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNE 261 (268)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC-
T ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 37888999999988888887 68999999999999999999999999999987753
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=135.81 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=90.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 178 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 221 (279)
T 3g64_A 178 LLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGP-A----------------------------------- 221 (279)
T ss_dssp HHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.+...+++++++.|...+..++.|+|+++++++|++||+|+..
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 275 (279)
T 3g64_A 222 LAHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQ 275 (279)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 377889999999988899999999999999999999999999999999887654
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-13 Score=134.99 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=89.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 209 (265)
T 3qxi_A 166 LALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANG-P----------------------------------- 209 (265)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus 210 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3qxi_A 210 LAVAATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWT 263 (265)
T ss_dssp HHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 377889999999988899999999999999999999999999999999987653
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=136.51 Aligned_cols=202 Identities=14% Similarity=0.108 Sum_probs=130.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~ 221 (561)
+||+|||+|.||.++|..|+++|++|++||+++++++...+. .-.+.....+.. .+++.+++++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~----------~~~i~e~~l~~~~~~~~~~g~l~~t~~~ 70 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQG----------KSPIVEPGLEALLQQGRQTGRLSGTTDF 70 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT----------CCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCC----------CCCcCCCCHHHHHHhhcccCceEEeCCH
Confidence 489999999999999999999999999999999987764321 000000011111 2356677777
Q ss_pred c-ccCCCCEEEEeccCChh--------hHHHHHHHHHhhcCC---CceeeecCCCCCHH----HHHhhccC--ccce-ec
Q 008576 222 E-SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPP---HCILASNTSTIDLN----LIGERTYS--KDRI-VG 282 (561)
Q Consensus 222 ~-~l~~aDlVieav~e~~~--------~k~~v~~~l~~~~~~---~~ii~s~tS~~~~~----~l~~~~~~--~~r~-ig 282 (561)
+ .+++||+||+|||.... ...++++++.+.+++ +++|+. .|+.++. .+...+.. ..++ +.
T Consensus 71 ~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~~ 149 (436)
T 1mv8_A 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGVD 149 (436)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred HHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence 5 58899999999987553 145677889888888 887764 4444432 23333321 1111 11
Q ss_pred cc-ccCCCCCCCeE---------EEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-----ccchhhhHH---HHHHHHH
Q 008576 283 AH-FFSPAHVMPLL---------EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAVNRMF---FPYTQAA 344 (561)
Q Consensus 283 ~h-~~~P~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-----~G~i~nrl~---~~~~~ea 344 (561)
.+ .++|....+.. .++.|. ++++..+.+.++++.+|.. +.+.+. ..++.|... .++++|+
T Consensus 150 ~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 150 FGVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp BEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 23554433221 234332 3688899999999999984 444432 234455443 4678999
Q ss_pred HHHHH-cCCCHHHHHHHHH
Q 008576 345 FLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 345 ~~l~~-~G~~~~~ID~a~~ 362 (561)
..+.+ .|+++++++.++.
T Consensus 228 ~~l~~~~Gid~~~v~~~~~ 246 (436)
T 1mv8_A 228 GNIAKAVGVDGREVMDVIC 246 (436)
T ss_dssp HHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHhc
Confidence 99886 4889999999986
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=135.30 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=89.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 179 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 222 (278)
T 4f47_A 179 LLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANG-P----------------------------------- 222 (278)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f 275 (278)
T 4f47_A 223 LAVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNF 275 (278)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 37888999999998889999999999999999999999999999999998765
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-13 Score=135.89 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=90.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 182 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 225 (286)
T 3myb_A 182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKP-R----------------------------------- 225 (286)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+..+
T Consensus 226 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g 280 (286)
T 3myb_A 226 AAVAMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHT 280 (286)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCC
Confidence 3778899999999888999999999999999999999999999999999887653
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-13 Score=134.77 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=89.6
Q ss_pred CcccCC--CCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCC
Q 008576 1 MMLTSK--PVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAP 78 (561)
Q Consensus 1 miltG~--~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (561)
|+|||+ +|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 173 l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~--------------------------------- 218 (274)
T 3tlf_A 173 MALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNA-P--------------------------------- 218 (274)
T ss_dssp HHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H---------------------------------
T ss_pred HHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCC-H---------------------------------
Confidence 578999 9999999999999999999999999999999999852 2
Q ss_pred CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 79 NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 79 ~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 219 --~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 271 (274)
T 3tlf_A 219 --LAVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNW 271 (274)
T ss_dssp --HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 37888999999998889999999999999999999999999999999988765
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-13 Score=136.62 Aligned_cols=97 Identities=26% Similarity=0.406 Sum_probs=88.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 165 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 208 (267)
T 3r9t_A 165 LLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNA-P----------------------------------- 208 (267)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCC-h-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHH---HHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDV---VEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~---v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++ ++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 209 ~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f 264 (267)
T 3r9t_A 209 LSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVW 264 (267)
T ss_dssp HHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 377889999 88888888999999999999999999999999999999998765
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=122.57 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=113.4
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
+||+||| +|.||..++..|++.|++|+++|++++..+...+.+. ..+.. ..+.. +++ +.++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~------------~~~~~-~~~~~~~~ 63 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR----RIAGD------------ASITG-MKNEDAAE 63 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH----HHHSS------------CCEEE-EEHHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----ccccc------------CCCCh-hhHHHHHh
Confidence 3899999 9999999999999999999999999987765432211 01110 11222 233 3467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--------------HHHHHhhccCccceecccccCCCC-
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--------------LNLIGERTYSKDRIVGAHFFSPAH- 290 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--------------~~~l~~~~~~~~r~ig~h~~~P~~- 290 (561)
++|+||+|+|. ....+++.++.+.++ ++++++.+++++ .+++++.++. .+++..|+..|..
T Consensus 64 ~~D~Vi~~~~~--~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~~~~~~~~ 139 (212)
T 1jay_A 64 ACDIAVLTIPW--EHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSALHTIPAAR 139 (212)
T ss_dssp HCSEEEECSCH--HHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECCTTCCHHH
T ss_pred cCCEEEEeCCh--hhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEccchHHHH
Confidence 89999999984 345578888877674 888888888665 5777777653 6787776543321
Q ss_pred ------CCCeEEEEeCCCCcHHHHHHHHHHHHhc-CCceEEEcc
Q 008576 291 ------VMPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (561)
Q Consensus 291 ------~~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d 327 (561)
...+..+++++ +++.++.+.++++.+ |+.++.+++
T Consensus 140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~ 181 (212)
T 1jay_A 140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP 181 (212)
T ss_dssp HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence 22356666764 688999999999999 999988876
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=135.26 Aligned_cols=98 Identities=18% Similarity=0.273 Sum_probs=89.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc-CCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH-RRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~-~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|+|||++++|+||+++||||+|||+++++++|.++|++++.. + |
T Consensus 162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~-p---------------------------------- 206 (265)
T 3qxz_A 162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVA-P---------------------------------- 206 (265)
T ss_dssp HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCC-H----------------------------------
Confidence 578999999999999999999999999999999999999984 2 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHH--HHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAG--LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~--l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.....+++++ ++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus 207 -~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~ 262 (265)
T 3qxz_A 207 -ESAALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWA 262 (265)
T ss_dssp -HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCC
T ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCC
Confidence 377889999999888888888 999999999999999999999999999988654
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-13 Score=135.20 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=89.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 231 (290)
T 3sll_A 188 IMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFS-R----------------------------------- 231 (290)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhc-CChHHHHHHHHHHHhHHh-cCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLL-RSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~-~~~~~~l~~E~~~~~~l~-~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.+.. .+++++++.|...+..++ .|+|+++++.+|++||+|+..
T Consensus 232 ~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~ 287 (290)
T 3sll_A 232 PGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFR 287 (290)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 377889999999988 899999999999999999 999999999999999987654
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=139.67 Aligned_cols=191 Identities=13% Similarity=0.110 Sum_probs=128.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC-
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~- 225 (561)
.+|+|||+|.||.+||..|+++|++|++||+++++++...+. ... + ..+..++++++ +.
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~~~---~------~gi~~~~s~~e~v~~ 71 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN----------EAK---G------KSIIGATSIEDFISK 71 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT----------TTT---T------SSEECCSSHHHHHHT
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc----------ccc---C------CCeEEeCCHHHHHhc
Confidence 589999999999999999999999999999999887764320 000 0 12344455533 34
Q ss_pred --CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhccC-ccceecccccCCCC---CCCeEEE
Q 008576 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPAH---VMPLLEI 297 (561)
Q Consensus 226 --~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~P~~---~~~lvei 297 (561)
.||+||.|||....+ +++++++.+.+++++||++.+++.+. .++.+.+.. ..+|+++....++. ..+ .+
T Consensus 72 l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~i 148 (497)
T 2p4q_A 72 LKRPRKVMLLVKAGAPV-DALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--SL 148 (497)
T ss_dssp SCSSCEEEECCCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred CCCCCEEEEEcCChHHH-HHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--eE
Confidence 499999999975444 46668899999999988876665553 345444432 22343332111111 122 24
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCc------eEEEcc-cccc----hhhhHH---HHHHHHHHHHHHc--CCCHHHHHHHH
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLIDRAI 361 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~----i~nrl~---~~~~~ea~~l~~~--G~~~~~ID~a~ 361 (561)
+.+ .+++.++.++++++.+|.. ++.+++ ..|. +.|.+. ...++|+..+... |++++++..++
T Consensus 149 m~g--g~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~ 226 (497)
T 2p4q_A 149 MPG--GSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF 226 (497)
T ss_dssp EEE--ECGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred Eec--CCHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 443 2678899999999999987 566653 3443 345554 3557899998875 89999999888
Q ss_pred H
Q 008576 362 T 362 (561)
Q Consensus 362 ~ 362 (561)
.
T Consensus 227 ~ 227 (497)
T 2p4q_A 227 A 227 (497)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-13 Score=131.14 Aligned_cols=97 Identities=26% Similarity=0.317 Sum_probs=88.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 202 (258)
T 2pbp_A 159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQP-P----------------------------------- 202 (258)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 255 (258)
T 2pbp_A 203 LALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRF 255 (258)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence 37778999999988889999999999999999999999999999999987654
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=136.51 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=127.7
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc--
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (561)
.+++|+|||+|.||.+||..|+++|++|++||+++++++... +.+... .++..+.++++
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~g--------~~i~~~~s~~e~v 63 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-----------ANEAKG--------TKVVGAQSLKEMV 63 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-----------HTTTTT--------SSCEECSSHHHHH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------hcccCC--------CceeccCCHHHHH
Confidence 457999999999999999999999999999999999877643 221100 12333344433
Q ss_pred --cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCC-------C
Q 008576 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAH-------V 291 (561)
Q Consensus 224 --l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~-------~ 291 (561)
++++|+||.|||.... .+.++.++.+.++++.||++.+++.+.. ++.+.+.. .|.||+. |+. .
T Consensus 64 ~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~----~Gi~fvd~pVsGg~~gA~~ 138 (484)
T 4gwg_A 64 SKLKKPRRIILLVKAGQA-VDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKA----KGILFVGSGVSGGEEGARY 138 (484)
T ss_dssp HTBCSSCEEEECSCSSHH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH----TTCEEEEEEEESHHHHHHH
T ss_pred hhccCCCEEEEecCChHH-HHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHh----hccccccCCccCCHHHHhc
Confidence 3469999999997644 4567789999999999888766666533 33333321 1344432 221 1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCce-------EEEcc-cccc---hhhhHH-H---HHHHHHHHHHHc--CCCH
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AVNRMF-F---PYTQAAFLLVER--GTDL 354 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G~---i~nrl~-~---~~~~ea~~l~~~--G~~~ 354 (561)
.+ .++.+ .+++.++.++++++.+|..+ +++++ ..|. ++++.+ . ..++|++.+.+. |+++
T Consensus 139 G~--~im~G--G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~ 214 (484)
T 4gwg_A 139 GP--SLMPG--GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQ 214 (484)
T ss_dssp CC--EEEEE--ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred CC--eeecC--CCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 23 33443 26789999999999999876 56654 2333 334333 3 346899998875 7899
Q ss_pred HHHHHHHH
Q 008576 355 YLIDRAIT 362 (561)
Q Consensus 355 ~~ID~a~~ 362 (561)
+++-.++.
T Consensus 215 ~~l~~v~~ 222 (484)
T 4gwg_A 215 DEMAQAFE 222 (484)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988874
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-13 Score=131.32 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=88.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++|+..+ |
T Consensus 161 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (260)
T 1mj3_A 161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS-K----------------------------------- 204 (260)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 257 (260)
T 1mj3_A 205 IIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF 257 (260)
T ss_dssp HHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 37788999999988889999999999999999999999999999999987654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=129.17 Aligned_cols=139 Identities=21% Similarity=0.218 Sum_probs=105.9
Q ss_pred ceEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++||+||| +|.||.+||..|++.|++|++||++++. +..+.+.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~ 64 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA 64 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence 56999999 9999999999999999999999988641 0012357
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCC----CCCeEEEEe
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH----VMPLLEIVR 299 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~----~~~lveiv~ 299 (561)
+||+||+|||.. ...++++++.+.++++++|++.+|... +..+.+.. +.++++.||+.++. ....+.+++
T Consensus 65 ~aDvVilavp~~--~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~ 140 (298)
T 2pv7_A 65 NADVVIVSVPIN--LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCD 140 (298)
T ss_dssp TCSEEEECSCGG--GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred CCCEEEEeCCHH--HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEec
Confidence 899999999954 578889999988999997765544322 33444433 46899999975432 234566666
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
+. +++.++.+.++++.+|..++.+++
T Consensus 141 ~~--~~~~~~~v~~l~~~~G~~~~~~~~ 166 (298)
T 2pv7_A 141 GR--FPERYEWLLEQIQIWGAKIYQTNA 166 (298)
T ss_dssp EE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred CC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence 54 678889999999999998888763
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-13 Score=130.96 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=88.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 209 (265)
T 2ppy_A 166 MNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSA-T----------------------------------- 209 (265)
T ss_dssp HHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 210 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~ 262 (265)
T 2ppy_A 210 YAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNW 262 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 37788999999988889999999999999999999999999999999987754
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=128.13 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=122.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
|+||+|||+|.||..+|..|++ |++|++||++++.++...+ .|. ...+..+.+.+
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~-----------~g~-------------~~~~~~~~~~~ 55 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQE-----------EFG-------------SEAVPLERVAE 55 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHH-----------HHC-------------CEECCGGGGGG
T ss_pred CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHH-----------CCC-------------cccCHHHHHhC
Confidence 3689999999999999999999 9999999999987765331 111 11122244678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccC-ccceecccccCC-CC---CCCeEEEEe
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYS-KDRIVGAHFFSP-AH---VMPLLEIVR 299 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~-~~r~ig~h~~~P-~~---~~~lveiv~ 299 (561)
+|+||+|+|.+..+ ..+++++.+.++++++|++.++.. ...++.+.+.. ..+++.. |+.+ +. ...+..++.
T Consensus 56 ~D~vi~~v~~~~~~-~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~ 133 (289)
T 2cvz_A 56 ARVIFTCLPTTREV-YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG 133 (289)
T ss_dssp CSEEEECCSSHHHH-HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE
T ss_pred CCEEEEeCCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC
Confidence 99999999965444 346688888888888877433322 23456555543 2344443 2211 11 123333444
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEEEccc-ccc----hhhhH---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF----AVNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~----i~nrl---~~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
+ +++.++.+.+++ .+|..++++++. .+. +.|.+ +...++|+..+.. .|++++++..++.
T Consensus 134 ~---~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 201 (289)
T 2cvz_A 134 G---PEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201 (289)
T ss_dssp S---CHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred C---CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3 788999999999 999888888753 332 23433 2355788888775 6889999888876
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-13 Score=131.97 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=89.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 164 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (269)
T 1nzy_A 164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP-T----------------------------------- 207 (269)
T ss_dssp HHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~ 261 (269)
T 1nzy_A 208 HLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRP 261 (269)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Confidence 377788999999888899999999999999999999999999999999887664
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-12 Score=134.34 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=129.0
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
++-++|+|||+|.||.+||..|+++|++|++||+++++++...+.. .+ ..+..++++++
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~---------~~-----------~gi~~~~s~~e~ 72 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN---------PG-----------KKLVPYYTVKEF 72 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS---------TT-----------SCEEECSSHHHH
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC---------CC-----------CCeEEeCCHHHH
Confidence 4456899999999999999999999999999999999877643210 00 12344455533
Q ss_pred cCC---CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhccC-ccceecccccC-CC--CCCCe
Q 008576 224 FKD---VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFS-PA--HVMPL 294 (561)
Q Consensus 224 l~~---aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~-P~--~~~~l 294 (561)
+++ ||+||.|||.... .+++++++.+.++++++|++.+++.+. ..+.+.+.. ..+++++.... |. ...+
T Consensus 73 v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~- 150 (480)
T 2zyd_A 73 VESLETPRRILLMVKAGAG-TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP- 150 (480)
T ss_dssp HHTBCSSCEEEECSCSSSH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-
T ss_pred HhCCCCCCEEEEECCCHHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-
Confidence 444 9999999996544 456778899999999988876666653 345444432 23344331111 11 1233
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCc-------eEEEcc-cccc----hhhhHH---HHHHHHHHHHHHc--CCCHHHH
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLI 357 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~~G~----i~nrl~---~~~~~ea~~l~~~--G~~~~~I 357 (561)
.++.+ .+++.++.++++++.+|.. +..+++ ..|. +.|.+. ...+.|+..+... |++++++
T Consensus 151 -~i~~g--g~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~ 227 (480)
T 2zyd_A 151 -SIMPG--GQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEEL 227 (480)
T ss_dssp -EEEEE--SCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred -eEEec--CCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 34444 2689999999999999987 556654 2332 344443 3457899888775 9999998
Q ss_pred HHHHH
Q 008576 358 DRAIT 362 (561)
Q Consensus 358 D~a~~ 362 (561)
..++.
T Consensus 228 ~~l~~ 232 (480)
T 2zyd_A 228 AQTFT 232 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-12 Score=134.77 Aligned_cols=201 Identities=15% Similarity=0.197 Sum_probs=131.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhh-----hcccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKT-----ISLLT 216 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~-----~~~i~ 216 (561)
.++||+|||+|.||.++|..|+++ |++|++||+++++++... .+... ....... ..++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~------------~g~~~i~e~gl~~~~~~~~~~~l~ 75 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWN------------SDKLPIYEPGLDEIVFAARGRNLF 75 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH------------CCCCCcCCCCHHHHHHHhhcCCEE
Confidence 467999999999999999999998 799999999999887633 11110 0011111 12466
Q ss_pred ccccc-cccCCCCEEEEeccCCh-------------hhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccC--c
Q 008576 217 GVLDY-ESFKDVDMVIEAIIENV-------------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--K 277 (561)
Q Consensus 217 ~~~~~-~~l~~aDlVieav~e~~-------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--~ 277 (561)
+++++ +.+++||+||+|||... ....++++++.++++++++|+. .|++++. ++.+.+.. .
T Consensus 76 ~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~~ 154 (481)
T 2o3j_A 76 FSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQK 154 (481)
T ss_dssp EESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHTC
T ss_pred EECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhhC
Confidence 67776 56889999999997643 2467788899999999998764 4455432 33333321 1
Q ss_pred ----c-ceecccccCCCCCCCe----------EEEEeCCCC--cHHHHHHHHHHHHhcCC-ceEEEccc-----ccchhh
Q 008576 278 ----D-RIVGAHFFSPAHVMPL----------LEIVRTNQT--SPQVIVDLLDIGKKIKK-TPIVVGNC-----TGFAVN 334 (561)
Q Consensus 278 ----~-r~ig~h~~~P~~~~~l----------veiv~~~~t--~~e~~~~~~~l~~~lGk-~~v~v~d~-----~G~i~n 334 (561)
. -.+.. +|....+. ..++.+... ++++.+.++++++.+++ .++++.+. ..++.|
T Consensus 155 ~~~~~d~~v~~---~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N 231 (481)
T 2o3j_A 155 NNENLKFQVLS---NPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVAN 231 (481)
T ss_dssp ----CCEEEEE---CCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHH
T ss_pred cCcCCceEEEe---CcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHH
Confidence 0 11222 34322211 123344322 23688899999999986 67776542 223344
Q ss_pred hH---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 335 RM---FFPYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 335 rl---~~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.+ ..++++|+..+.+ .|++++++..++.
T Consensus 232 ~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~~ 263 (481)
T 2o3j_A 232 AFLAQRISSINSISAVCEATGAEISEVAHAVG 263 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 42 3356899999887 5899999999987
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.7e-13 Score=130.02 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=87.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 157 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (253)
T 1uiy_A 157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA-P----------------------------------- 200 (253)
T ss_dssp HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+
T Consensus 201 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~ 252 (253)
T 1uiy_A 201 TSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR 252 (253)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence 3777899999998888999999999999999999999999999999998764
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-13 Score=133.24 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=80.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 163 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (260)
T 1sg4_A 163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIP-D----------------------------------- 206 (260)
T ss_dssp HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....+++++++.|.+.|..++.|+|+++++++|++||+++|
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~ 259 (260)
T 1sg4_A 207 HARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence 36778899998887778889999999999999999999999999999998876
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-13 Score=132.63 Aligned_cols=94 Identities=26% Similarity=0.219 Sum_probs=71.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 165 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 208 (262)
T 3r9q_A 165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFP-Q----------------------------------- 208 (262)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.|...+|++++.+...+++++++.|.+ +..++.| |++|++.+|++||++.
T Consensus 209 ~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~ 258 (262)
T 3r9q_A 209 QCVRADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRH 258 (262)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-----------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCC
Confidence 378889999999998999999999999 9999999 9999999999998764
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.9e-13 Score=130.20 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=88.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++|+|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (257)
T 2ej5_A 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMP-T----------------------------------- 201 (257)
T ss_dssp HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 254 (257)
T 2ej5_A 202 KAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLF 254 (257)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCC
Confidence 37778999999988889999999999999999999999999999999987654
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=130.92 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=88.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 189 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 232 (287)
T 2vx2_A 189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLS-R----------------------------------- 232 (287)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 233 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f 285 (287)
T 2vx2_A 233 PVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVW 285 (287)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 36778899999888889999999999999999999999999999999987754
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=130.80 Aligned_cols=122 Identities=20% Similarity=0.310 Sum_probs=91.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||.++|..|+.+|+ +|++||++++.++.....+.+..... ....++..+++++++++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~~ 82 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALI------------GSPAKIFGENNYEYLQN 82 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHH------------TCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhcc------------CCCCEEEECCCHHHHCC
Confidence 599999999999999999999999 99999999988875433333322110 01246777788888999
Q ss_pred CCEEEEec--cC------------ChhhHHHHHHHHHhhcCCCcee--eecCCCCCHHHHHhhcc--Cccceecc
Q 008576 227 VDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIVGA 283 (561)
Q Consensus 227 aDlVieav--~e------------~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~r~ig~ 283 (561)
||+||+++ |+ +..+++++++++.+++ +++++ +||++++. +.++.... +|.|++|+
T Consensus 83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~ 155 (328)
T 2hjr_A 83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM 155 (328)
T ss_dssp CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence 99999998 54 4567999999999998 56654 67766543 44443333 57888886
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-13 Score=136.62 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=54.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+...+|
T Consensus 194 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p----------------------------------- 238 (298)
T 3qre_A 194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSP----------------------------------- 238 (298)
T ss_dssp HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCH-----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCH-----------------------------------
Confidence 578999999999999999999999999999999999999984112
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|+..+|++++.....++++++..|...+..++.|+|+++++.+|++||+|+..
T Consensus 239 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~ 292 (298)
T 3qre_A 239 SSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFP 292 (298)
T ss_dssp HHHHHHHHHHHGGGGC--------------------------------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 378889999999988899999999999999999999999999999999988764
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=130.86 Aligned_cols=151 Identities=17% Similarity=0.094 Sum_probs=108.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
..++|+|||+|.||.++|..|...|++|+++|++++. .+.+. +.|. ..+ +. +.
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G~-------------~~~-~~~e~ 69 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHGL-------------KVA-DVKTA 69 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTTC-------------EEE-CHHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCCC-------------EEc-cHHHH
Confidence 3468999999999999999999999999999998765 22211 2221 122 33 44
Q ss_pred cCCCCEEEEeccCChhhHHHHHH-HHHhhcCCCceeeecCCCCCHHHHHhhc-cCccceecccccCCCCC---------C
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVGAHFFSPAHV---------M 292 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig~h~~~P~~~---------~ 292 (561)
+++||+||+|+|.. ....++. ++.+.++++++|++. +++.+ .+.... +....+++.||+.|.+. .
T Consensus 70 ~~~aDvVilavp~~--~~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g 145 (338)
T 1np3_A 70 VAAADVVMILTPDE--FQGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGG 145 (338)
T ss_dssp HHTCSEEEECSCHH--HHHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCC
T ss_pred HhcCCEEEEeCCcH--HHHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCC
Confidence 78999999999954 4478888 898889999988865 44444 332222 12235899999777641 2
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCC-c--eEEE
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKK-T--PIVV 325 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk-~--~v~v 325 (561)
..+-++++..++++..+.+..+++.+|. . ++.+
T Consensus 146 ~~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~ 181 (338)
T 1np3_A 146 IPDLIAIYQDASGNAKNVALSYACGVGGGRTGIIET 181 (338)
T ss_dssp CCEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEEC
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHcCCCccceEee
Confidence 3344566667788889999999999998 4 5555
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=129.25 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=86.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 168 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 211 (264)
T 1wz8_A 168 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGP-K----------------------------------- 211 (264)
T ss_dssp HHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|++++.+... ++++++.|.+.+..++.|+|+++++++|++||+|+
T Consensus 212 ~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 262 (264)
T 1wz8_A 212 EALHHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPE 262 (264)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCC
Confidence 3677889999988877 89999999999999999999999999999998775
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-13 Score=132.49 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=81.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 183 l~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 226 (291)
T 2fbm_A 183 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYN-P----------------------------------- 226 (291)
T ss_dssp HHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHH-HhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF-FAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF-~~kr~~~k~ 134 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+| ++||+|+..
T Consensus 227 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~ 281 (291)
T 2fbm_A 227 IVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFP 281 (291)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence 377789999998877788999999999999999999999999999 999988654
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=130.97 Aligned_cols=191 Identities=13% Similarity=0.076 Sum_probs=128.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~ 225 (561)
.+||+|||+|.||..+|..|+++|++|++||++++.++...+.. . + ..+..++++++ +.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~--------~-~-----------~gi~~~~s~~e~v~ 64 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH--------Q-D-----------KNLVFTKTLEEFVG 64 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT--------T-T-----------SCEEECSSHHHHHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC--------c-C-----------CCeEEeCCHHHHHh
Confidence 46899999999999999999999999999999998877643210 0 0 12334445533 33
Q ss_pred ---CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhccC-ccceecccccCCC---CCCCeEE
Q 008576 226 ---DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPA---HVMPLLE 296 (561)
Q Consensus 226 ---~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~P~---~~~~lve 296 (561)
++|+||+|||....+ ..+++++.+.++++++|++.+++.+. .++.+.+.. ..+++++....++ ...+ .
T Consensus 65 ~l~~aDvVilavp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~ 141 (474)
T 2iz1_A 65 SLEKPRRIMLMVQAGAAT-DATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--S 141 (474)
T ss_dssp TBCSSCEEEECCCTTHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--C
T ss_pred hccCCCEEEEEccCchHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--e
Confidence 499999999975444 45678888889889988876666543 455555532 2234432111111 1122 1
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCc--------eEEEcc-ccc----chhhhHH---HHHHHHHHHHHHc--CCCHHHHH
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKT--------PIVVGN-CTG----FAVNRMF---FPYTQAAFLLVER--GTDLYLID 358 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~--------~v~v~d-~~G----~i~nrl~---~~~~~ea~~l~~~--G~~~~~ID 358 (561)
++.+ .+++..+.+.++++.+|.. +..+++ ..| ++.|.+. ...+.|+..+... |++++++.
T Consensus 142 i~~g--g~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~ 219 (474)
T 2iz1_A 142 MMPG--GQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ 219 (474)
T ss_dssp EEEE--ECHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred EEec--CCHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3343 2788999999999999987 355553 233 2445543 3457899988875 89999999
Q ss_pred HHHH
Q 008576 359 RAIT 362 (561)
Q Consensus 359 ~a~~ 362 (561)
.++.
T Consensus 220 ~l~~ 223 (474)
T 2iz1_A 220 AIFE 223 (474)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8885
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-13 Score=133.03 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=51.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (256)
T 3qmj_A 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKP-I----------------------------------- 206 (256)
T ss_dssp HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.|...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 256 (256)
T 3qmj_A 207 SSLMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR 256 (256)
T ss_dssp HHHHHHHHHHHCC-------------------------------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence 37888999999988889999999999999999999999999999999984
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=129.26 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 160 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 203 (261)
T 1ef8_A 160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHh--HHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQ--KLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~--~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.+...+++++++.|.+.+. .++.|+|+++++++|++||+|+.
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~ 258 (261)
T 1ef8_A 204 LAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNF 258 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCC
Confidence 377789999999888889999999999999 99999999999999999987754
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.9e-13 Score=130.95 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=76.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 185 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 228 (280)
T 2f6q_A 185 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLP-P----------------------------------- 228 (280)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~ 131 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|
T Consensus 229 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p 279 (280)
T 2f6q_A 229 NALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK 279 (280)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence 367788999988877788999999999999999999999999999999875
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-13 Score=131.42 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=87.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 165 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 208 (261)
T 2gtr_A 165 MLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCN-P----------------------------------- 208 (261)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+
T Consensus 209 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~ 260 (261)
T 2gtr_A 209 VVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDE 260 (261)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence 3777899999988777889999999999999999999999999999998764
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=118.19 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=101.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
..+||+|||+|.||.+||..|+++|++|++||++++. +.+.... +.+.............+...+..+.+
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~ 88 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPD---------AMGAPPFSQWLPEHPHVHLAAFADVA 88 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC----------------CCHHHHGGGSTTCEEEEHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhh---------hhcchhhhHHHhhcCceeccCHHHHH
Confidence 4579999999999999999999999999999999986 1110000 00000000000001122222233457
Q ss_pred CCCCEEEEeccCChhhHHHHHHHH-HhhcCCCceeeecCCCC----------------CH-HHHHhhccCcccee-cccc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTSTI----------------DL-NLIGERTYSKDRIV-GAHF 285 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l-~~~~~~~~ii~s~tS~~----------------~~-~~l~~~~~~~~r~i-g~h~ 285 (561)
++||+||.|||.+ ...+++.++ .+.+ ++++|++.+.++ .+ ..+++.++. .+++ ++++
T Consensus 89 ~~aDvVilavp~~--~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~~~~~ 164 (245)
T 3dtt_A 89 AGAELVVNATEGA--SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVKTLNT 164 (245)
T ss_dssp HHCSEEEECSCGG--GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEECSTT
T ss_pred hcCCEEEEccCcH--HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEEeecc
Confidence 8999999999954 334666677 6666 777777655321 23 345555543 4555 4444
Q ss_pred cC------CCC--CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCc-eEEEcc
Q 008576 286 FS------PAH--VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT-PIVVGN 327 (561)
Q Consensus 286 ~~------P~~--~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~-~v~v~d 327 (561)
.. |.. ..++..++.+. +++..+.++++++.+|+. ++.+++
T Consensus 165 ~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~ 213 (245)
T 3dtt_A 165 MNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD 213 (245)
T ss_dssp SCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence 31 111 23444455553 689999999999999975 477775
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-12 Score=131.30 Aligned_cols=136 Identities=16% Similarity=0.098 Sum_probs=91.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccC-------CCchh---hhcccC-CCCCch--hHHHHH-
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR-------RPWVA---TLYKTD-KIEPLG--EAREIF- 66 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~-------~p~~~---~~~~~~-~~~~~~--~~~~~~- 66 (561)
|+|||++|+|++|+++||||+|||+++|++.+.+++.+..... .|... ...... -+.... .....+
T Consensus 168 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~L~ 247 (353)
T 4hdt_A 168 AALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAALR 247 (353)
T ss_dssp HHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999887643310 00000 000000 000000 000001
Q ss_pred ----HHHHHHHHh-hCCCCCcHHHHHHHHHHhhcC-ChHHHHHHHHHHHhHHhcCHHHHHHHHHHH--hhccCCCCCC
Q 008576 67 ----KFARAQARK-QAPNLTHPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLLRSETCKSLVHIFF--AQRGTSKVPG 136 (561)
Q Consensus 67 ----~~a~~~~~~-~~~~~~A~~~~~~~v~~~~~~-~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~--~kr~~~k~~~ 136 (561)
..+...... ..++|.++..+|++++.+... +++++|+.|.+.+..++.|+|++|+++||+ +||+|+-.+.
T Consensus 248 ~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p~ 325 (353)
T 4hdt_A 248 AHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRPA 325 (353)
T ss_dssp HHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSSC
T ss_pred hcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCCC
Confidence 011111222 245688999999999998875 799999999999999999999999999998 8888876543
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=128.56 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|+|||++|+|+||+++||||+|||+ +++++.|.++|++|+..+ |
T Consensus 172 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~-p---------------------------------- 216 (275)
T 1dci_A 172 LTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS-P---------------------------------- 216 (275)
T ss_dssp HHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999999 999999999999999852 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhh---ccCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ---RGTSK 133 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~k---r~~~k 133 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++| |+|+.
T Consensus 217 -~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f 272 (275)
T 1dci_A 217 -VAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITF 272 (275)
T ss_dssp -HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCC
T ss_pred -HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence 377789999999888899999999999999999999999999999999 77654
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-12 Score=127.62 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=82.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 173 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 216 (275)
T 4eml_A 173 IWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKS-P----------------------------------- 216 (275)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|...+|++++..... .......|.+.+..++.|+|+++++.+|++||+|+..
T Consensus 217 ~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~ 269 (275)
T 4eml_A 217 LAIRCLKAAFNADCDG-QAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFS 269 (275)
T ss_dssp HHHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCT
T ss_pred HHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 3777889998886532 3344567888888999999999999999999988764
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=129.00 Aligned_cols=96 Identities=20% Similarity=0.212 Sum_probs=78.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++|+|+||+++||||+||| ++++.|.++|++|+..+ |
T Consensus 163 l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~-~----------------------------------- 204 (266)
T 3fdu_A 163 LLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALP-L----------------------------------- 204 (266)
T ss_dssp HHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999998 89999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.|...+|++++.+. .+++++++.|.+.+..++.|+|+++++++|++||+|+...
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~ 258 (266)
T 3fdu_A 205 ASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ 258 (266)
T ss_dssp HHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence 37778899888765 4788999999999999999999999999999999987753
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=118.62 Aligned_cols=175 Identities=14% Similarity=0.110 Sum_probs=112.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
+||+|||+|.||.+||..|+++|++|++||+ +++.++... +.|. . ++. +.+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~-----------~~g~-------------~--~~~~~~~ 54 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR-----------TVGV-------------T--ETSEEDV 54 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----------HHTC-------------E--ECCHHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHH-----------HCCC-------------c--CCHHHHH
Confidence 3899999999999999999999999999998 666654422 1121 1 233 346
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH---HHHHhhccCccceecccccCCCC---CCCeEEEE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFSPAH---VMPLLEIV 298 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~---~~l~~~~~~~~r~ig~h~~~P~~---~~~lveiv 298 (561)
.+||+||+|||.+...+. +.++.+.+++ +|++ +|+..+ ..+.+.+.... ++..+.+.++. ...+ .++
T Consensus 55 ~~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~-~s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~ 127 (264)
T 1i36_A 55 YSCPVVISAVTPGVALGA--ARRAGRHVRG--IYVD-INNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIA 127 (264)
T ss_dssp HTSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEE-CSCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEE
T ss_pred hcCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEE-ccCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEe
Confidence 899999999997654433 3567666666 4544 345543 35666665443 66655554432 2233 455
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEcccccc-----hhhhHH----HHHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMF----FPYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~-----i~nrl~----~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.++. + +.+.+ ++.+|+.++.+++..|. +.++.+ ...++|++.+.. .|++++.+ ..+.
T Consensus 128 ~g~~---~--~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~~ 194 (264)
T 1i36_A 128 SGRD---A--EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EMLE 194 (264)
T ss_dssp ESTT---H--HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred cCCc---H--HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHH
Confidence 5532 2 67778 89999988888754443 344443 345788888765 58877633 4444
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-12 Score=126.84 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=86.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+| ++++++.|.++|++|+..+ |
T Consensus 171 l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~-~----------------------------------- 212 (267)
T 3oc7_A 171 YYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGS-P----------------------------------- 212 (267)
T ss_dssp HHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999 7889999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 213 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 265 (267)
T 3oc7_A 213 QGLAASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNW 265 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 37788999999988888999999999999999999999999999999998754
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-12 Score=127.00 Aligned_cols=123 Identities=18% Similarity=0.326 Sum_probs=90.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+...+.. .....++..++++++++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~------------~~~~~~i~~t~d~~al~ 71 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM------------AYSNCKVSGSNTYDDLA 71 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH------------HTCCCCEEEECCGGGGT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhh------------cCCCcEEEECCCHHHhC
Confidence 5699999999999999999999998 9999999998887544333332211 01123567777888899
Q ss_pred CCCEEEEec--cCCh-----------------hhHHHHHHHHHhhcCCCcee--eecCCCCCHHHHHhhcc--Cccceec
Q 008576 226 DVDMVIEAI--IENV-----------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIVG 282 (561)
Q Consensus 226 ~aDlVieav--~e~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~r~ig 282 (561)
+||+||+++ |+++ .+++++++++.+++ +++++ +||++++. +.+..... +|.|++|
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG 149 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIG 149 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEe
Confidence 999999998 6532 37899999999998 56644 57766554 44443333 5778888
Q ss_pred c
Q 008576 283 A 283 (561)
Q Consensus 283 ~ 283 (561)
+
T Consensus 150 ~ 150 (322)
T 1t2d_A 150 L 150 (322)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=115.54 Aligned_cols=135 Identities=11% Similarity=0.074 Sum_probs=100.7
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
..+||+|||+|.||.++|..|+++|++|++||++++ .++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~ 56 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATT 56 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhc
Confidence 457999999999999999999999999999998754 356
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---------------HHHHHhhccCccceec-ccccC-C
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---------------LNLIGERTYSKDRIVG-AHFFS-P 288 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---------------~~~l~~~~~~~~r~ig-~h~~~-P 288 (561)
+||+||+|+| ....+++++++.+.++ +++|++.+++++ ...+++.++ ..+++. .|++. |
T Consensus 57 ~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p 132 (209)
T 2raf_A 57 LGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAA 132 (209)
T ss_dssp CCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHH
T ss_pred cCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHh
Confidence 8999999999 4556788888888887 888887777554 345555554 356777 66642 2
Q ss_pred CC-----C--CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 289 AH-----V--MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 289 ~~-----~--~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.. . .+...++.+ .+++..+.+.++++.+|..++.+++
T Consensus 133 ~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~ 176 (209)
T 2raf_A 133 TLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK 176 (209)
T ss_dssp HHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred hccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence 11 1 122333444 3678999999999999998888876
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-12 Score=125.88 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=84.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 171 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 214 (273)
T 2uzf_A 171 IWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHS-P----------------------------------- 214 (273)
T ss_dssp HHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHH-HHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEA-EDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~-~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++ ...+++++++.|. +.+..++.|+|+++++++|++||+|+..
T Consensus 215 ~a~~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~ 267 (273)
T 2uzf_A 215 TALRFLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFD 267 (273)
T ss_dssp HHHHHHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCS
T ss_pred HHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCC
Confidence 36777888887 3457889999999 9999999999999999999999887653
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=131.24 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=126.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c--
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F-- 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l-- 224 (561)
+||+|||+|.||..+|..|+++|++|++||++++.++...+. ...| ..+..++++++ +
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~--------~~~g-----------~gi~~~~~~~e~v~~ 63 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN--------EAKG-----------TKVLGAHSLEEMVSK 63 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT--------TTTT-----------SSCEECSSHHHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc--------cccC-----------CCeEEeCCHHHHHhh
Confidence 479999999999999999999999999999999887764320 0000 12334555544 2
Q ss_pred -CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccC-ccceecccccCCCC---CCCeEEE
Q 008576 225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYS-KDRIVGAHFFSPAH---VMPLLEI 297 (561)
Q Consensus 225 -~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~-~~r~ig~h~~~P~~---~~~lvei 297 (561)
+++|+||+|||....+ ..++.++.+.++++++|++.+++.+.. .+.+.+.. ...++++..+.++. ..+ .+
T Consensus 64 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i 140 (482)
T 2pgd_A 64 LKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL 140 (482)
T ss_dssp BCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred ccCCCEEEEeCCChHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence 5899999999975444 456788888898888888766665532 44444432 23344332211111 122 23
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCce-------EEEcc-ccc----chhhhHH---HHHHHHHHHHHH-c-CCCHHHHHHH
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKTP-------IVVGN-CTG----FAVNRMF---FPYTQAAFLLVE-R-GTDLYLIDRA 360 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G----~i~nrl~---~~~~~ea~~l~~-~-G~~~~~ID~a 360 (561)
+.+. +++..+.+.++++.+|..+ +.+++ ..| ++.|.+. ...++|+..+.. . |++++++..+
T Consensus 141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~ 218 (482)
T 2pgd_A 141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA 218 (482)
T ss_dssp EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 4332 4678889999999999875 44442 233 2345443 245789988876 4 8899999888
Q ss_pred HH
Q 008576 361 IT 362 (561)
Q Consensus 361 ~~ 362 (561)
+.
T Consensus 219 ~~ 220 (482)
T 2pgd_A 219 FE 220 (482)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-11 Score=127.58 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=127.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC-
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~- 225 (561)
+||+|||+|.||..+|..|+++|++|++||++++.++...+. .|... . -..+..++++++ +.
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~g~~~-~-----~~~i~~~~~~~e~v~~ 65 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA----------NASAP-F-----AGNLKAFETMEAFAAS 65 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TTTST-T-----GGGEEECSCHHHHHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCCC-C-----CCCeEEECCHHHHHhc
Confidence 379999999999999999999999999999999887764321 12110 0 012444555543 33
Q ss_pred --CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhccC-ccceecccccCCCC---CCCeEEE
Q 008576 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPAH---VMPLLEI 297 (561)
Q Consensus 226 --~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~P~~---~~~lvei 297 (561)
++|+||+|||....+ ..+++++.+.++++++|++.+++.+. ..+.+.+.. ...+++.....++. ..+ .+
T Consensus 66 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i 142 (478)
T 1pgj_A 66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP--AF 142 (478)
T ss_dssp BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred ccCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC--eE
Confidence 599999999975444 45678888889889988866655543 345554432 22333332111111 123 23
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCc-------eEEEcc-cccc----hhhhHHH---HHHHHHHHHHH-cCCCHHHHHHHH
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGF----AVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAI 361 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~~G~----i~nrl~~---~~~~ea~~l~~-~G~~~~~ID~a~ 361 (561)
+.+ .+++..+.++++++.+|.. ++.+++ ..|. +.|.+.. ..+.|+..+.. .|++++++..++
T Consensus 143 ~~g--g~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~ 220 (478)
T 1pgj_A 143 FPG--GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVL 220 (478)
T ss_dssp EEE--ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ecc--CCHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 433 2688899999999999987 455553 2332 2344432 45789988775 578999988887
Q ss_pred H
Q 008576 362 T 362 (561)
Q Consensus 362 ~ 362 (561)
.
T Consensus 221 ~ 221 (478)
T 1pgj_A 221 E 221 (478)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-12 Score=127.50 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=82.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 187 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~-~----------------------------------- 230 (289)
T 3t89_A 187 IWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNS-P----------------------------------- 230 (289)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|...+|++++.... ........|.+.+..++.|+|++|++.+|++||+|+..
T Consensus 231 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~ 283 (289)
T 3t89_A 231 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFS 283 (289)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCT
T ss_pred HHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 377788999988653 23344457888888999999999999999999988764
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=128.08 Aligned_cols=96 Identities=16% Similarity=0.256 Sum_probs=82.5
Q ss_pred CcccCCCCChHHHHhCCCcceecC-CCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVA-PNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~-~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|++||++++|+||+++||||+||| ++++.+.|.++|++++..+ |
T Consensus 165 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~-~---------------------------------- 209 (263)
T 3lke_A 165 LLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGY-V---------------------------------- 209 (263)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSC-H----------------------------------
T ss_pred HHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 578999999999999999999999 9999999999999999852 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++++|.+++++.
T Consensus 210 -~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~ 261 (263)
T 3lke_A 210 -PAIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHH 261 (263)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCC
Confidence 3778899999998888899999999999999999999999999999998764
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-12 Score=125.24 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=83.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchH----HHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhh
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLV----STARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~----~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (561)
|+|||++|+|+||+++||||+|||++++. +.|.+++++++..+
T Consensus 169 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~--------------------------------- 215 (272)
T 1hzd_A 169 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQG--------------------------------- 215 (272)
T ss_dssp HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSC---------------------------------
T ss_pred HHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCC---------------------------------
Confidence 57899999999999999999999998864 46667777766631
Q ss_pred CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 77 ~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
+.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 216 ---p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~ 269 (272)
T 1hzd_A 216 ---PVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRY 269 (272)
T ss_dssp ---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCC
T ss_pred ---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 237778999999988889999999999999999999999999999999988754
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-12 Score=127.76 Aligned_cols=94 Identities=10% Similarity=0.074 Sum_probs=66.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (250)
T 2a7k_A 157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYP-A----------------------------------- 200 (250)
T ss_dssp HHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus 201 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 250 (250)
T 2a7k_A 201 SAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY 250 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 37778999999887778899999999999999999999999999999874
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-12 Score=127.36 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=82.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ +
T Consensus 171 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~------------------------------------p 214 (287)
T 3gkb_A 171 VVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALP------------------------------------D 214 (287)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC------------------------------------T
T ss_pred HHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.|...+|++++.. ..+++++.|.+.+..++.|+|+++++.+|++||+
T Consensus 215 ~a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~ 261 (287)
T 3gkb_A 215 GVIEAAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGA 261 (287)
T ss_dssp THHHHHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 4788889888764 3468999999999999999999999999999986
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-12 Score=132.80 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=53.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++|+++|.++|++|+..+ |
T Consensus 232 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~-p----------------------------------- 275 (334)
T 3t8b_A 232 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKS-P----------------------------------- 275 (334)
T ss_dssp HHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|+..+|++++.... ++.+.+..|.+.+..++.|+|++|++.+|++||+|...
T Consensus 276 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~ 328 (334)
T 3t8b_A 276 QAQRMLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWS 328 (334)
T ss_dssp HHHHHHHHHHHHTCC-CC------------------------------------
T ss_pred HHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 377889999988754 45556677888889999999999999999999988654
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.7e-12 Score=125.32 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=83.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++|+|+||+++||||+|| +++++.|.++|++|+..+ |
T Consensus 186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~-~----------------------------------- 227 (276)
T 3rrv_A 186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELP-Q----------------------------------- 227 (276)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 57899999999999999999999 889999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr 129 (561)
.+...+|++++.....+++++++.|...+..++.|+|+++++.+|++||
T Consensus 228 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR 276 (276)
T 3rrv_A 228 QAVESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN 276 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 3778899999988888899999999999999999999999999999986
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=124.05 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=104.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-cc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 224 (561)
.|+||+|||+|.||.++|..|+++|++|++||++++.++...+. .......++ ......+..+++.+ .+
T Consensus 14 ~M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~--------~~~~~~~~~--~~~~~~~~~~~~~~~~~ 83 (366)
T 1evy_A 14 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK--------RENVLFLKG--VQLASNITFTSDVEKAY 83 (366)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH--------TBCTTTSTT--CBCCTTEEEESCHHHHH
T ss_pred ccCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc--------Ccccccccc--cccccceeeeCCHHHHH
Confidence 35599999999999999999999999999999999887653321 000000000 00011344445553 47
Q ss_pred CCCCEEEEeccCChhhHHHHHHH----HHhhcCC-CceeeecCCCCCHH---HHHhhccCccceecccc----cCCCC--
Q 008576 225 KDVDMVIEAIIENVSLKQQIFAD----LEKYCPP-HCILASNTSTIDLN---LIGERTYSKDRIVGAHF----FSPAH-- 290 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~----l~~~~~~-~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~----~~P~~-- 290 (561)
.+||+||+|||. ....+++.+ +.+.+++ +++|++.++++.+. .+.+.+.. +++.|. ..|..
T Consensus 84 ~~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~---~~~~~~~~v~~gp~~~~ 158 (366)
T 1evy_A 84 NGAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFAI 158 (366)
T ss_dssp TTCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCHH
T ss_pred cCCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHH---HCCCCcEEEEeCCChHH
Confidence 899999999984 567788888 8888888 88888877666543 22222211 112111 12221
Q ss_pred ----CCCeEEEEeCCCCcHHHHHHHHHHHHhc--CCceEEEccc
Q 008576 291 ----VMPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNC 328 (561)
Q Consensus 291 ----~~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~ 328 (561)
..+...++.+ .+++..+.+.+++... |..++...|.
T Consensus 159 ~~~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~g~~~~~~~di 200 (366)
T 1evy_A 159 EVATGVFTCVSIAS--ADINVARRLQRIMSTGDRSFVCWATTDT 200 (366)
T ss_dssp HHHTTCCEEEEEEC--SSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred HHHhCCceEEEEec--CCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence 1122222332 3678889999999998 7666666553
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.2e-12 Score=124.31 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=77.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 214 (272)
T 3qk8_A 171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGA-Q----------------------------------- 214 (272)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhc---CChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~---~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|...+|++++.... .++++.++.| ..++.|+|+++++++|++||+|+..
T Consensus 215 ~a~~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~ 267 (272)
T 3qk8_A 215 NAIRWTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFT 267 (272)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC-
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 377788888886544 2344444444 4788999999999999999988654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=125.77 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=90.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
+||+|||+|.||.++|..|+..|+ +|++||++++.++.....+.+.... .+ ...++..++|++ +++
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~---~~---------~~~~i~~t~d~~ea~~ 77 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV---VD---------TNVSVRAEYSYEAALT 77 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH---TT---------CCCCEEEECSHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhc---cC---------CCCEEEEeCCHHHHhC
Confidence 599999999999999999999998 9999999998887644333333211 11 124677778886 799
Q ss_pred CCCEEEEec--cCCh-----------------hhHHHHHHHHHhhcCCCcee--eecCCCCCHHHHHhhcc--Cccceec
Q 008576 226 DVDMVIEAI--IENV-----------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIVG 282 (561)
Q Consensus 226 ~aDlVieav--~e~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~r~ig 282 (561)
+||+||+++ |+++ .+++++++++.+++ +++++ +||++++. +.+..... +|.|++|
T Consensus 78 ~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rviG 155 (331)
T 1pzg_A 78 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMICG 155 (331)
T ss_dssp TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEEe
Confidence 999999998 7654 34899999999998 56655 57776654 44443333 5678888
Q ss_pred c
Q 008576 283 A 283 (561)
Q Consensus 283 ~ 283 (561)
+
T Consensus 156 ~ 156 (331)
T 1pzg_A 156 M 156 (331)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-12 Score=126.68 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=69.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 170 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 213 (276)
T 2j5i_A 170 YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKN-P----------------------------------- 213 (276)
T ss_dssp HHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHH--hcCH-HHHHHHHHHHhhc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKL--LRSE-TCKSLVHIFFAQR 129 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l--~~s~-~~~~~~~aF~~kr 129 (561)
.+...+|++++.+...+++++++.|.+.+..+ +.|+ |+++++.+|++||
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr 265 (276)
T 2j5i_A 214 VVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDK 265 (276)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcc
Confidence 37788999999988889999999998888776 6699 9999999999998
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-12 Score=124.88 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=83.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 168 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~-p----------------------------------- 211 (289)
T 3h0u_A 168 AVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFP-R----------------------------------- 211 (289)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFA 127 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~ 127 (561)
.|+..+|++++.+.. +++++++.|.+.+..++.|+|+++++++|++
T Consensus 212 ~a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle 257 (289)
T 3h0u_A 212 DALIAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK 257 (289)
T ss_dssp HHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 378889999999887 8999999999999999999999999999999
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=117.93 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=100.9
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
.++||+|||+|.||..++..|++.|++|+++|++++.++... +.| +... +. +.+
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~-~~~~~~ 81 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVT-FQEEAV 81 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEE-EHHHHT
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------Ccee-cHHHHH
Confidence 457899999999999999999999999999999988765421 111 1222 33 447
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHH----------hhccCccceecc-ccc-----CC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG----------ERTYSKDRIVGA-HFF-----SP 288 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----------~~~~~~~r~ig~-h~~-----~P 288 (561)
.++|+||+|+|.. ....+++ +.+.. ++++|++.+++++++.+. +.++ ..++++. ++. .+
T Consensus 82 ~~~DvVi~av~~~--~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~ 156 (215)
T 2vns_A 82 SSPEVIFVAVFRE--HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQA 156 (215)
T ss_dssp TSCSEEEECSCGG--GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHT
T ss_pred hCCCEEEECCChH--HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhcc
Confidence 8999999999853 3344554 55555 788898888888776542 3332 2344432 111 11
Q ss_pred -CCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 289 -AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 289 -~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
+...+...++.+ .+++.++.+.++++.+|+.++.+++
T Consensus 157 ~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~ 194 (215)
T 2vns_A 157 GPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS 194 (215)
T ss_dssp CSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred cccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence 111122223333 3789999999999999999999875
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-12 Score=124.32 Aligned_cols=90 Identities=23% Similarity=0.304 Sum_probs=53.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++|+|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 169 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 212 (258)
T 3lao_A 169 YILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAA-P----------------------------------- 212 (258)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~ 126 (561)
.++..+|++++.....+++++++.|.+.+..++.|+|+++++++|+
T Consensus 213 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ 258 (258)
T 3lao_A 213 LAVRAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV 258 (258)
T ss_dssp HHHHHHHHHHHHHTC-------------------------------
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence 3788899999999888999999999999999999999999999995
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=121.31 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=83.0
Q ss_pred CcccceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 143 APRRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 143 ~~~~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
+.++++||+|||+|.||.++|..++.+|+ +|+++|++++....+.+.. + . ...++..++|
T Consensus 10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~----~--~------------~~~~i~~t~d 71 (303)
T 2i6t_A 10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE----I--F------------NLPNVEISKD 71 (303)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH----H--H------------TCTTEEEESC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh----h--h------------cCCCeEEeCC
Confidence 34557899999999999999999999999 9999999987322222111 0 0 0125666678
Q ss_pred ccccCCCCEEEEec-------------cCChhhHHHHHHHHHhhcCCCcee--eecCCCCCHHHHHhhcc-Cccceecc
Q 008576 221 YESFKDVDMVIEAI-------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY-SKDRIVGA 283 (561)
Q Consensus 221 ~~~l~~aDlVieav-------------~e~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~-~~~r~ig~ 283 (561)
++++++||+||+++ .++..+++++++++.+++ +++++ +||++.+-...+..... .|.|++|+
T Consensus 72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~ 149 (303)
T 2i6t_A 72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI 149 (303)
T ss_dssp GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence 88899999999997 889999999999999998 56654 57744422222222222 25778776
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=121.47 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=78.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+.+ +.+.+++++|+..+ |
T Consensus 163 llltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~-p----------------------------------- 204 (267)
T 3hp0_A 163 MTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLN-K----------------------------------- 204 (267)
T ss_dssp HHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999998644 34778888888842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.|...+|++++... .+.+++++.|.+.+..++.|+|++|++.+|++||+|+..+
T Consensus 205 ~a~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~ 258 (267)
T 3hp0_A 205 KGIAHYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED 258 (267)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC----
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence 37788999998864 3467888899999999999999999999999999998753
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.4e-12 Score=123.61 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=72.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 167 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 210 (263)
T 3l3s_A 167 MALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARN-Q----------------------------------- 210 (263)
T ss_dssp HHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~k 128 (561)
.+...+|++++.+...+++++++.|.+.+..++.|+|++|++++|...
T Consensus 211 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~ 258 (263)
T 3l3s_A 211 APLRRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGH 258 (263)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence 378889999999988899999999999999999999999999999753
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=119.76 Aligned_cols=169 Identities=19% Similarity=0.070 Sum_probs=106.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK-----FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS 213 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~ 213 (561)
.++||+|||+|.||.++|..|+++| ++|++||++++ ..+...+ ........++ .....
T Consensus 7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~--------~~~~~~~~~~--~~~~~ 76 (354)
T 1x0v_A 7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINT--------QHENVKYLPG--HKLPP 76 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHH--------HSCCTTTSTT--CCCCT
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHh--------cCcccccCCc--ccCcc
Confidence 3569999999999999999999999 99999999987 5543221 0000000000 00012
Q ss_pred ccccccccc-ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--------HHH-HhhccCccceecc
Q 008576 214 LLTGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NLI-GERTYSKDRIVGA 283 (561)
Q Consensus 214 ~i~~~~~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--------~~l-~~~~~~~~r~ig~ 283 (561)
++..+++.+ .+.+||+||+|||+ ....++++++.+.++++++|++.++++.+ .+. .+.++.+ ..+-.
T Consensus 77 ~~~~~~~~~~~~~~aD~Vilav~~--~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~ 153 (354)
T 1x0v_A 77 NVVAVPDVVQAAEDADILIFVVPH--QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVLM 153 (354)
T ss_dssp TEEEESSHHHHHTTCSEEEECCCG--GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEEE
T ss_pred CeEEEcCHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEEE
Confidence 344455653 47899999999995 57788999999999999999888877653 221 2222211 11111
Q ss_pred cccCCCC---CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccc
Q 008576 284 HFFSPAH---VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (561)
Q Consensus 284 h~~~P~~---~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (561)
.|..+.. ..+...++.+ .+++..+.+.+++...|..+++..|..
T Consensus 154 gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~ 200 (354)
T 1x0v_A 154 GANIASEVADEKFCETTIGC--KDPAQGQLLKELMQTPNFRITVVQEVD 200 (354)
T ss_dssp CSCCHHHHHTTCCEEEEEEC--SSHHHHHHHHHHHCBTTEEEEEESCHH
T ss_pred CCCcHHHHHhcCCceEEEEE--CCHHHHHHHHHHhCCCCEEEEEcCCch
Confidence 1211111 1222222232 467889999999999998777776643
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.5e-10 Score=116.10 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=125.9
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
+|.+|+|||+|.+|..+|.+|++.||+|+.+|+|+++++...+. +.+.+.+.++ -+++++
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~------------~g~l~~ 87 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALS------------SGRLSF 87 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEE
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHH------------cCCeeE
Confidence 57899999999999999999999999999999999998764321 1111222222 246778
Q ss_pred ccccc-ccCCCCEEEEeccC--------ChhhHHHHHHHHHhhcC---CCceeeecCCCCCHH---HHHh-hccCcccee
Q 008576 218 VLDYE-SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCP---PHCILASNTSTIDLN---LIGE-RTYSKDRIV 281 (561)
Q Consensus 218 ~~~~~-~l~~aDlVieav~e--------~~~~k~~v~~~l~~~~~---~~~ii~s~tS~~~~~---~l~~-~~~~~~r~i 281 (561)
+++.+ .+++||++|.|||. |+.......+.|.++++ ++++|+ ..||.++. ++.. .+.... -
T Consensus 88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV-~eSTVppGtte~~~~~~l~~~~--~ 164 (444)
T 3vtf_A 88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVV-VKSTVPPGTTEGLVARAVAEEA--G 164 (444)
T ss_dssp CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEE-ECSCCCTTTTTTHHHHHHHTTT--T
T ss_pred EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEE-EeCCCCCchHHHHHHHHHHHhC--C
Confidence 88874 58999999999974 34456666777776664 455554 35555543 2211 111100 1
Q ss_pred cccc---cCCCCCCCe----------EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc---chhhhHHH----HHH
Q 008576 282 GAHF---FSPAHVMPL----------LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG---FAVNRMFF----PYT 341 (561)
Q Consensus 282 g~h~---~~P~~~~~l----------veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G---~i~nrl~~----~~~ 341 (561)
+..| ++|-...+. -.|+.+ .++...+.+..+++.+....++++.... .++.+.+. +++
T Consensus 165 ~~~f~v~~~PErl~eG~a~~d~~~~~riViG~--~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~ 242 (444)
T 3vtf_A 165 GVKFSVASNPEFLREGSALEDFFKPDRIVIGA--GDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFA 242 (444)
T ss_dssp TCCCEEEECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeecCcccccCCccccccccCCcEEEcC--CCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHH
Confidence 2222 134322111 113333 4677888888898888766555542222 23333333 568
Q ss_pred HHHHHHHH-cCCCHHHHHHHHH
Q 008576 342 QAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 342 ~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
||...+.+ .|+++.+|-.++.
T Consensus 243 NEla~ice~~GiDv~eV~~a~~ 264 (444)
T 3vtf_A 243 NEVGLLAKRLGVDTYRVFEAVG 264 (444)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhc
Confidence 99988886 5899999888874
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=120.25 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=79.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|++ +++|.++|++|+..+ |
T Consensus 171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~-p----------------------------------- 210 (264)
T 3he2_A 171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLA-P----------------------------------- 210 (264)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCC-H-----------------------------------
Confidence 578999999999999999999986 468899999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|...+|++++.. .+++++++.|.+.+..++.|+|++|++.+|++||+|+..
T Consensus 211 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~ 262 (264)
T 3he2_A 211 LAIQHAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQ 262 (264)
T ss_dssp HHHHHHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 3777889999876 356778889999999999999999999999999988653
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-10 Score=116.22 Aligned_cols=200 Identities=17% Similarity=0.209 Sum_probs=120.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhh----ccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTI----SLLTGVLDY- 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~----~~i~~~~~~- 221 (561)
+||+|||+|.||..+|..|++ |++|++||+++++++...+ .+. +........+ .++..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~-----------~~~~i~e~~l~~~~~~~~~~l~~t~~~~ 68 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINN-----------GLSPIQDEYIEYYLKSKQLSIKATLDSK 68 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHT-----------TCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHc-----------CCCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence 489999999999999999999 9999999999988776331 111 1111111111 245566665
Q ss_pred cccCCCCEEEEeccCCh---------hhHHHHHHHHHhhcCCCceeee-cCCCCC-HHHHHhhccCccceecccc--cCC
Q 008576 222 ESFKDVDMVIEAIIENV---------SLKQQIFADLEKYCPPHCILAS-NTSTID-LNLIGERTYSKDRIVGAHF--FSP 288 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~---------~~k~~v~~~l~~~~~~~~ii~s-~tS~~~-~~~l~~~~~~~~r~ig~h~--~~P 288 (561)
+.+.+||+||.|||... ....++++++.+ +.++++|+. +|.... ..++.+.+... .+...| ..|
T Consensus 69 ~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~ 145 (402)
T 1dlj_A 69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRE 145 (402)
T ss_dssp HHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCT
T ss_pred HHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccC
Confidence 45789999999998753 156778888888 888887764 333332 33555544322 222111 122
Q ss_pred CCC-----CCeEEEEeCCCC----cHHHHHHHHHHHHh-cCC-c-eEEEccc-cc----chhhhHH---HHHHHHHHHHH
Q 008576 289 AHV-----MPLLEIVRTNQT----SPQVIVDLLDIGKK-IKK-T-PIVVGNC-TG----FAVNRMF---FPYTQAAFLLV 348 (561)
Q Consensus 289 ~~~-----~~lveiv~~~~t----~~e~~~~~~~l~~~-lGk-~-~v~v~d~-~G----~i~nrl~---~~~~~ea~~l~ 348 (561)
... .+--.++.+... ..+..+.+.+++.. ..+ . ++++.+. .+ .+.|-+. .++++|+..+.
T Consensus 146 G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~ 225 (402)
T 1dlj_A 146 SKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYA 225 (402)
T ss_dssp TSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 011123344321 12556777777765 322 2 4666552 22 2333322 35678998888
Q ss_pred H-cCCCHHHHHHHHH
Q 008576 349 E-RGTDLYLIDRAIT 362 (561)
Q Consensus 349 ~-~G~~~~~ID~a~~ 362 (561)
+ .|+++.++-.++.
T Consensus 226 ~~~Gid~~~v~~~~~ 240 (402)
T 1dlj_A 226 ESRKLNSHMIIQGIS 240 (402)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHhc
Confidence 6 5899999998885
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-12 Score=122.76 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=68.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (256)
T 3pe8_A 156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNN-Q----------------------------------- 199 (256)
T ss_dssp HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHH---hcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKL---LRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l---~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|++++.+...+++++++.|.+.|..+ ..++|+++++.+|++|+++.
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~ 254 (256)
T 3pe8_A 200 KAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQ 254 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCcc
Confidence 37788999999988889999999999997755 56778899999999998875
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-11 Score=119.96 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=72.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++|+|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 202 (254)
T 3isa_A 159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALD-P----------------------------------- 202 (254)
T ss_dssp HHTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999842 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|+++. ++.++.|.+.+..++.|+|+++++.+|++||+|...
T Consensus 203 ~a~~~~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~ 249 (254)
T 3isa_A 203 ATRATLHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGH 249 (254)
T ss_dssp HHHHHHHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC------
T ss_pred HHHHHHHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC
Confidence 25566677663 234567888999999999999999999999988764
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=117.84 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=111.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.++||+|||+|.||+.+|..|+++|++|++| ++++.++...+ .|......-......+..+++.+.+.
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA-----------TGLRLETQSFDEQVKVSASSDPSAVQ 85 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH-----------HCEEEECSSCEEEECCEEESCGGGGT
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh-----------CCeEEEcCCCcEEEeeeeeCCHHHcC
Confidence 3579999999999999999999999999999 99887765431 12100000000112344556667788
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhccCccceeccc------ccCCCCC---CCeE
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAH------FFSPAHV---MPLL 295 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h------~~~P~~~---~~lv 295 (561)
++|+||.|||.. ..+++++++.+.++++++|++.+.++.. +.+.+.++ .++++.. ...|-.. ...
T Consensus 86 ~~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g- 160 (318)
T 3hwr_A 86 GADLVLFCVKST--DTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRG- 160 (318)
T ss_dssp TCSEEEECCCGG--GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEE-
T ss_pred CCCEEEEEcccc--cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCc-
Confidence 999999999964 5678899999999999999999999987 45566554 4455321 1123211 111
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 337 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~ 337 (561)
.+.-+. .+..+.+.+++...|.......|.-+.....++
T Consensus 161 ~~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~ 199 (318)
T 3hwr_A 161 ELVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLI 199 (318)
T ss_dssp EEEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHH
T ss_pred eEEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHH
Confidence 111222 234566778888888877776665554444433
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.2e-10 Score=114.16 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=92.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHhhhcccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~l 224 (561)
+||+|||+|.||+.+|..|+++|++|++||++++.++... +.|. .... .+ .+..+++.+++
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~-----------~~g~~~~~~~~----~~-~~~~~~~~~~~ 78 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLIN-----------VSHTSPYVEES----KI-TVRATNDLEEI 78 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HHSCBTTBTTC----CC-CSEEESCGGGC
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HhCCcccCCCC----ee-eEEEeCCHHHh
Confidence 5999999999999999999999999999999988776532 1121 0000 00 24445555448
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccC--c-cceecccccCCC---CCCCeE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--K-DRIVGAHFFSPA---HVMPLL 295 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--~-~r~ig~h~~~P~---~~~~lv 295 (561)
.++|+||.|||. ....+++.++.+ ++++|++.+.++.+. .+++.+.. + ...+...|..+. ...+..
T Consensus 79 ~~aDvVil~vk~--~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~ 153 (335)
T 1z82_A 79 KKEDILVIAIPV--QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTA 153 (335)
T ss_dssp CTTEEEEECSCG--GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEE
T ss_pred cCCCEEEEECCH--HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceE
Confidence 899999999984 455566665544 677777666554432 23332211 1 001111111111 111222
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 328 (561)
.++.+. + .+.+.+++...|..+....|.
T Consensus 154 ~~~g~~--~---~~~~~~ll~~~g~~~~~~~di 181 (335)
T 1z82_A 154 VTLAGE--N---SKELQKRISTEYFRVYTCEDV 181 (335)
T ss_dssp EEEEET--T---HHHHHHHHCCSSEEEEEESCH
T ss_pred EEEEeh--h---HHHHHHHhCCCCEEEEecCch
Confidence 222221 2 678889999888877766653
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.1e-10 Score=116.04 Aligned_cols=169 Identities=12% Similarity=-0.004 Sum_probs=106.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK-----FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL 214 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 214 (561)
++||+|||+|.||++||..|+++| ++|++||++++ .++...+ ........++ .....+
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~--------~~~~~~~~~~--~~~~~~ 90 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINN--------KHENTKYLKG--VPLPHN 90 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHH--------HCBCTTTSTT--CBCCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHh--------cCcccccCCc--ccCcCC
Confidence 468999999999999999999999 99999999987 4443211 0000000000 001123
Q ss_pred cccccccc-ccCCCCEEEEeccCChhhHHHHHHHHHh----hcCCCceeeecCCCCCH-----HHHHhh----ccCccce
Q 008576 215 LTGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK----YCPPHCILASNTSTIDL-----NLIGER----TYSKDRI 280 (561)
Q Consensus 215 i~~~~~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~----~~~~~~ii~s~tS~~~~-----~~l~~~----~~~~~r~ 280 (561)
+..+++.+ .+.+||+||+|||. ....++++++.+ .++++++|++.++++.+ ..+.+. ++.+. .
T Consensus 91 i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~ 167 (375)
T 1yj8_A 91 IVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPC-S 167 (375)
T ss_dssp EEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCE-E
T ss_pred eEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCE-E
Confidence 55556664 47899999999994 678889999988 88899999888877654 122222 21110 1
Q ss_pred ecccccCCC---CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 281 VGAHFFSPA---HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 281 ig~h~~~P~---~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
+-..|..+. ...+...++.+ .+++..+.+.+++...|..++...|..|
T Consensus 168 v~~gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~ 218 (375)
T 1yj8_A 168 ALSGANIAMDVAMENFSEATIGG--NDKDSLVIWQRVFDLPYFKINCVNETIE 218 (375)
T ss_dssp EEECSCCHHHHHTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred EEeCCchHHHHHhCCCeEEEEec--CCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 111111110 11222223333 3678889999999999988777776443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=120.91 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=109.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
++||+|||.|.||.++|..|.++ |++|++.+++.+ ..+.+ .+.|..... ....
T Consensus 54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~d---------~ta~ 113 (525)
T 3fr7_A 54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEES---------GTLG 113 (525)
T ss_dssp CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTTT---------TCEE
T ss_pred CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEec---------CCCC
Confidence 37999999999999999999999 999987776543 22221 133432100 0012
Q ss_pred cc-cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHh---hccCccceecccccCCCCC----
Q 008576 220 DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYSKDRIVGAHFFSPAHV---- 291 (561)
Q Consensus 220 ~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~r~ig~h~~~P~~~---- 291 (561)
+. +.+++||+||.++|.. ...+++.++.+.++++++| +..+++.+..+.+ ..+....++..||..|.+.
T Consensus 114 s~aEAa~~ADVVILaVP~~--~~~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~ 190 (525)
T 3fr7_A 114 DIWETVSGSDLVLLLISDA--AQADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRL 190 (525)
T ss_dssp EHHHHHHHCSEEEECSCHH--HHHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHH
T ss_pred CHHHHHhcCCEEEECCChH--HHHHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHH
Confidence 33 4578999999999954 3356888999999999985 7788888887765 3334468999999999774
Q ss_pred -----------CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceE
Q 008576 292 -----------MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323 (561)
Q Consensus 292 -----------~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v 323 (561)
++. -+..+...+.+..+.+..++..+|...+
T Consensus 191 y~~G~~~~g~Gv~~-liAv~qd~tgea~e~alala~aiG~~~v 232 (525)
T 3fr7_A 191 YVQGKEINGAGINS-SFAVHQDVDGRATDVALGWSVALGSPFT 232 (525)
T ss_dssp HHHHTTSTTCSCCE-EEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred HhcccccccCCccE-EEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence 331 2333445667888999999999998754
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.9e-11 Score=121.50 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=85.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHH--------------HhhccC---CC----chhhhcccCC-CCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL--------------DILEHR---RP----WVATLYKTDK-IEP 58 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~--------------~la~~~---~p----~~~~~~~~~~-~~~ 58 (561)
|+|||++|+|++|+++||||+|||++++.+.+..+++ .+.... .| .......... +..
T Consensus 165 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~ 244 (363)
T 3bpt_A 165 LALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSA 244 (363)
T ss_dssp HHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCC
Confidence 5789999999999999999999999998765544432 111000 00 0000000000 000
Q ss_pred chhHHHHHH--------HHHHHHHhh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH-hh
Q 008576 59 LGEAREIFK--------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ 128 (561)
Q Consensus 59 ~~~~~~~~~--------~a~~~~~~~-~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~-~k 128 (561)
+ .....++ .+++.+.+- .+++.++..+|++++.+...+++++++.|.+.+..++.|+|+++++++|+ +|
T Consensus 245 ~-~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK 323 (363)
T 3bpt_A 245 N-TVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDK 323 (363)
T ss_dssp S-SHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTSC
T ss_pred C-CHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeCC
Confidence 0 0011111 111223332 34567899999999999888999999999999999999999999999999 67
Q ss_pred -ccCCC
Q 008576 129 -RGTSK 133 (561)
Q Consensus 129 -r~~~k 133 (561)
|+|+.
T Consensus 324 ~r~P~~ 329 (363)
T 3bpt_A 324 DQSPKW 329 (363)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 66544
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-11 Score=117.25 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=81.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 154 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 197 (243)
T 2q35_A 154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSP-R----------------------------------- 197 (243)
T ss_dssp HHHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~ 126 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+||
T Consensus 198 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~ 243 (243)
T 2q35_A 198 LSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF 243 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence 3777899999988777889999999999999999999999999885
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-10 Score=115.19 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=104.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++||+|||+|.||+.+|..|+++|++|++||++ +.++... +.|......-......+..+++.+++.+
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALGE 70 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence 579999999999999999999999999999995 4444321 2231100000000112334556666789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-------------------H-HHHHhhccCccceecc-cc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-------------------L-NLIGERTYSKDRIVGA-HF 285 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-------------------~-~~l~~~~~~~~r~ig~-h~ 285 (561)
+|+||.|||. ....++++++.+.++++++|++...+++ . ..+.+.++. .++++. -+
T Consensus 71 ~D~Vilavk~--~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-~~v~~gv~~ 147 (335)
T 3ghy_A 71 QDVVIVAVKA--PALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT-RHVLGCVVH 147 (335)
T ss_dssp CSEEEECCCH--HHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG-GGEEEEEEC
T ss_pred CCEEEEeCCc--hhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc-ccEEEEEEE
Confidence 9999999985 4556888889888999998888777753 1 245555532 344422 11
Q ss_pred -----cCCCCC---C-CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 286 -----FSPAHV---M-PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 286 -----~~P~~~---~-~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
..|-.. . ..+.+-.....+.+..+.+.+++...|.......|..+
T Consensus 148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 201 (335)
T 3ghy_A 148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR 201 (335)
T ss_dssp CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence 122211 1 11222222223456778888899988877666666444
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-10 Score=113.07 Aligned_cols=166 Identities=13% Similarity=-0.010 Sum_probs=105.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||..+|..|+++|++|++||++++.++... ..+... . .....+. .++.+.+.++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~-----------~~~~~~-~---~~~~~~~-~~~~~~~~~~ 64 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVETDG-S---IFNESLT-ANDPDFLATS 64 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECTTS-C---EEEEEEE-ESCHHHHHTC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEE-----------EEcCCC-c---eeeeeee-ecCccccCCC
Confidence 4899999999999999999999999999999976543200 011000 0 0000111 2234557889
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH-HHHhhccCcccee-ccccc-----CCCCC----CCeEE
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIV-GAHFF-----SPAHV----MPLLE 296 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~i-g~h~~-----~P~~~----~~lve 296 (561)
|+||.|+|.. ...++++++.+.++++++|++.++++... .+.+.++ . ++ |.+++ .| .. ...+.
T Consensus 65 d~vi~~v~~~--~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p-~~~~~~~g~~~ 138 (291)
T 1ks9_A 65 DLLLVTLKAW--QVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGN-VIIHVANGITH 138 (291)
T ss_dssp SEEEECSCGG--GHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETT-EEEEEECCCEE
T ss_pred CEEEEEecHH--hHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCC-EEEEecccceE
Confidence 9999999965 35788899999999899888877777553 4444332 2 43 33321 34 11 11122
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhH
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl 336 (561)
+.... .+++.++.+.++++.+|..+++.+|..+...+.+
T Consensus 139 i~~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl 177 (291)
T 1ks9_A 139 IGPAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKL 177 (291)
T ss_dssp EEESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHH
T ss_pred EccCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHH
Confidence 33322 3456778899999999988887776444444433
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=120.96 Aligned_cols=132 Identities=9% Similarity=-0.007 Sum_probs=87.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHH---H----------------HHHHHHHhhccCC---Cchh---hhcccCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVS---T----------------ARQWALDILEHRR---PWVA---TLYKTDK 55 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~---~----------------A~~~a~~la~~~~---p~~~---~~~~~~~ 55 (561)
|+|||++|+|+||+++||||+|||++++.+ + +.++++++..... |... .......
T Consensus 205 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~ 284 (407)
T 3ju1_A 205 LGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDR 284 (407)
T ss_dssp HHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHH
T ss_pred HHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHH
Confidence 578999999999999999999999999877 3 4444433322100 0000 0000000
Q ss_pred -CCCchhHHHHHH----------HHHHHHHh-hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHH
Q 008576 56 -IEPLGEAREIFK----------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVH 123 (561)
Q Consensus 56 -~~~~~~~~~~~~----------~a~~~~~~-~~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~ 123 (561)
+. . ....+++ .++...++ ..+++.++..+|++++.+...+++++++.|.+.+..++.++|++|+++
T Consensus 285 ~f~-~-sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvr 362 (407)
T 3ju1_A 285 LMA-G-SLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVR 362 (407)
T ss_dssp HTC-S-CHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred Hhc-C-CHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 00 0 0011111 11111111 235678999999999999999999999999999999999999999999
Q ss_pred HHH-hh-ccCCCC
Q 008576 124 IFF-AQ-RGTSKV 134 (561)
Q Consensus 124 aF~-~k-r~~~k~ 134 (561)
+|+ +| |+|+-.
T Consensus 363 AflidKdr~P~w~ 375 (407)
T 3ju1_A 363 ALLIDKDKQPKWQ 375 (407)
T ss_dssp HHTTSCCCCCCCS
T ss_pred HHHhcCCcCCCCC
Confidence 998 77 666543
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.6e-10 Score=111.79 Aligned_cols=164 Identities=12% Similarity=0.024 Sum_probs=102.9
Q ss_pred eEEEEEcCccchHHHHHHHHhC-----C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHh-hhccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILS-----N-YPVILKEVNEKFLEAGIGRVRANLQSRVK-KGKMTQEKFEK-TISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-----G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~-~~~~i~~~~ 219 (561)
+||+|||+|.||..+|..|+++ | ++|++||+ ++.++... + .|......... ....+..++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~-----------~~~g~~~~~~~~~~~~~~~~~~~ 76 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIR-----------AAGGLRVVTPSRDFLARPTCVTD 76 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHH-----------HHTSEEEECSSCEEEECCSEEES
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHH-----------hcCCeEEEeCCCCeEEecceEec
Confidence 5899999999999999999999 9 99999999 66555422 1 22110000000 000122234
Q ss_pred cccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhccCccceecccccCCCCC-------
Q 008576 220 DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFSPAHV------- 291 (561)
Q Consensus 220 ~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~~~P~~~------- 291 (561)
+.+.+.++|+||.||+... ..++++++.+.+.++++|++.+.++.. ..+.+.++.. +++....+.++..
T Consensus 77 ~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~~ 153 (317)
T 2qyt_A 77 NPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDT-VVWKGCVYISARKSAPGLIT 153 (317)
T ss_dssp CHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEEE
T ss_pred CccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEEE
Confidence 4455789999999998653 477888898888888888877777776 4555555432 3333333222211
Q ss_pred --CCe-EEEEeC--CCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 292 --MPL-LEIVRT--NQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 292 --~~l-veiv~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
... +.++.. ...+.+.+ .+.+++...|....+.+|
T Consensus 154 ~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~d 193 (317)
T 2qyt_A 154 LEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTD 193 (317)
T ss_dssp EEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSC
T ss_pred EcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchH
Confidence 111 121332 33456667 889999999987766655
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=110.92 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=93.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+...+ .. .. ..++.. +++++++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~----~~--~~-------~~~i~~-~d~~~~~ 66 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT----PF--TR-------RANIYA-GDYADLK 66 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG----GG--SC-------CCEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhh----hh--cC-------CcEEEe-CCHHHhC
Confidence 489999999999999999999999 99999999987765332222111 00 00 123333 3577899
Q ss_pred CCCEEEEeccCC--------------hhhHHHHHHHHHhhcCCCcee--eecCCCCCHHHHHhhc-c-CccceecccccC
Q 008576 226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERT-Y-SKDRIVGAHFFS 287 (561)
Q Consensus 226 ~aDlVieav~e~--------------~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~-~-~~~r~ig~h~~~ 287 (561)
+||+||+|++.. ..+++++++++.+++ +++++ +||.++.. +.+.... . .|.|++|+
T Consensus 67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~---- 140 (319)
T 1a5z_A 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS---- 140 (319)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC----
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee----
Confidence 999999999852 246788999999986 45543 45554432 3443332 2 46677775
Q ss_pred CCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCc
Q 008576 288 PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT 321 (561)
Q Consensus 288 P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~ 321 (561)
.|..++......+.+.+|..
T Consensus 141 --------------~t~ld~~r~~~~la~~lgv~ 160 (319)
T 1a5z_A 141 --------------GTVLDTARLRTLIAQHCGFS 160 (319)
T ss_dssp --------------TTHHHHHHHHHHHHHHHTCC
T ss_pred --------------CccHHHHHHHHHHHHHhCcC
Confidence 35566666666677777743
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-10 Score=113.67 Aligned_cols=122 Identities=18% Similarity=0.304 Sum_probs=82.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.. .......+++.+++++++++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~------------~~~~~~~~i~~t~d~~a~~~ 70 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS------------PIEGFDVRVTGTNNYADTAN 70 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTH------------HHHTCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhH------------hhcCCCeEEEECCCHHHHCC
Confidence 599999999999999999999997 99999999887753221111110 00111235666678888999
Q ss_pred CCEEEEec--------------cCChhhHHHHHHHHHhhcCCCcee--eecCCCCCHHHHHhhc-c-Cccceecc
Q 008576 227 VDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERT-Y-SKDRIVGA 283 (561)
Q Consensus 227 aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~-~-~~~r~ig~ 283 (561)
||+||+++ .++..+++++++++.+++ +++++ +||..... +.+.... . .|.|++|+
T Consensus 71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~-t~~~~~~~~~~~~rviG~ 143 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAM-TYLAAEVSGFPKERVIGQ 143 (309)
T ss_dssp CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEEC
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHH-HHHHHHHcCCCHHHEEEC
Confidence 99999997 445678889999999987 66654 34433221 2222221 1 35677775
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-10 Score=114.15 Aligned_cols=86 Identities=21% Similarity=0.311 Sum_probs=75.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.++|++++..+ +
T Consensus 179 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 222 (277)
T 4di1_A 179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECP------------------------------------P 222 (277)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSC------------------------------------H
T ss_pred HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.|+..+|++++.+...+++++++.|.+.|..++.|+ +||+|+
T Consensus 223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~ 264 (277)
T 4di1_A 223 RALAAAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDG 264 (277)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC----
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCc
Confidence 488899999999998999999999999999999988 777776
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.8e-09 Score=106.74 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=103.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc--cc-c
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL--DY-E 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~ 222 (561)
+||+|||+|.||..+|..|+++|++|++||+ +++.++... +.+....... . +..+..++ ++ +
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~g~-~-~~~~~~~~~~~~~~ 67 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-----------AGREHPRLGV-K-LNGVEIFWPEQLEK 67 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-----------TTCCBTTTTB-C-CCSEEEECGGGHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHH-----------HhCcCcccCc-c-ccceEEecHHhHHH
Confidence 3899999999999999999999999999999 888766532 2221000000 0 01223344 44 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC------CHHHHHhhccCccceecc-c----ccCCCCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI------DLNLIGERTYSKDRIVGA-H----FFSPAHV 291 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~------~~~~l~~~~~~~~r~ig~-h----~~~P~~~ 291 (561)
.+.++|+||.|+|.. ...+++.++.+ ++++++|++.+.++ ....+.+.+... +|. | ...|...
T Consensus 68 ~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~---~g~~~~~~~~~~p~~~ 141 (335)
T 1txg_A 68 CLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLK---HDLRERTVAITGPAIA 141 (335)
T ss_dssp HHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTS---TTCGGGEEEEESSCCH
T ss_pred HHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHh---cCCCCcEEEEECCCcH
Confidence 478999999999854 56788889988 88888887766555 234555544321 111 1 1233221
Q ss_pred ------CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc
Q 008576 292 ------MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (561)
Q Consensus 292 ------~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 328 (561)
.+...++.+ .+++..+.+.++++..|..+.+..|.
T Consensus 142 ~~~~~g~~~~~~~~~--~~~~~~~~~~~ll~~~g~~~~~~~di 182 (335)
T 1txg_A 142 REVAKRMPTTVVFSS--PSESSANKMKEIFETEYFGVEVTTDI 182 (335)
T ss_dssp HHHHTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEEESCH
T ss_pred HHHHccCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCch
Confidence 112222333 35788999999999988877776663
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.97 E-value=6e-10 Score=111.97 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=81.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.||.++|..|+.+|+ +|+++|+++++++..... ..... . .. ...++.. +++++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~--------l~~~~-~---~~-~~~~i~~-~~~~a~~ 66 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAED--------IAHAA-P---VS-HGTRVWH-GGHSELA 66 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HTTSC-C---TT-SCCEEEE-ECGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHh--------hhhhh-h---hc-CCeEEEE-CCHHHhC
Confidence 489999999999999999999999 999999998766531111 11111 0 00 0112332 4677899
Q ss_pred CCCEEEEec--cC------------ChhhHHHHHHHHHhhcCCCcee--eecCCCCCHHHHHhhccCccceecc
Q 008576 226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYSKDRIVGA 283 (561)
Q Consensus 226 ~aDlVieav--~e------------~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~~~~r~ig~ 283 (561)
+||+||+++ |. +..+++++++++.+++ +++++ +||++.+....+++.. .|.|++|+
T Consensus 67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~ 138 (304)
T 2v6b_A 67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS 138 (304)
T ss_dssp TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence 999999999 42 4557899999999986 66644 4666554433444444 67787775
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-09 Score=107.24 Aligned_cols=167 Identities=13% Similarity=0.068 Sum_probs=106.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||+.+|..|+++|++|++|++++ .+... +.|...... -...+..+..+++.+.+.+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~-----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 69 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIA-----------GNGLKVFSINGDFTLPHVKGYRAPEEIGP 69 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHH-----------HTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHH-----------hCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence 589999999999999999999999999999986 23211 222110000 0000012333455566789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHHhhccCccceeccc------ccCCCC---CCC-eE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAH------FFSPAH---VMP-LL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~ig~h------~~~P~~---~~~-lv 295 (561)
+|+||.||+. ....++++++.+.+.++++|++...++. .+.+.+.++. .++++.. ...|-. ..+ .+
T Consensus 70 ~D~vilavk~--~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~ 146 (312)
T 3hn2_A 70 MDLVLVGLKT--FANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI 146 (312)
T ss_dssp CSEEEECCCG--GGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred CCEEEEecCC--CCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence 9999999984 3455889999999999999999888986 4556666543 3444332 112221 111 12
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
.+-..+..+.+..+.+.+++...|.......|.-+
T Consensus 147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 181 (312)
T 3hn2_A 147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKR 181 (312)
T ss_dssp EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHH
T ss_pred EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHH
Confidence 22223334466778888999988877766556433
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.1e-11 Score=110.96 Aligned_cols=149 Identities=16% Similarity=0.233 Sum_probs=99.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
.+||+|||+|.||..+|..|.+.|++|++||++++ .+... ..+ +...+..+.+.+
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g-------------~~~~~~~~~~~~ 73 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLL-----------PRG-------------AEVLCYSEAASR 73 (201)
Confidence 35899999999999999999999999999999876 32210 111 111222245778
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--------HHHHhhccCccceecccccCCCCCCC-eE--
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NLIGERTYSKDRIVGAHFFSPAHVMP-LL-- 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--------~~l~~~~~~~~r~ig~h~~~P~~~~~-lv-- 295 (561)
+|+||.|+|.. . ...++ ++.. ..++++|++.+++++. ..+.+.++. .+++...++.|+.... ..
T Consensus 74 aDvVilav~~~-~-~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~ 148 (201)
T 2yjz_A 74 SDVIVLAVHRE-H-YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLD 148 (201)
Confidence 99999999854 3 33444 4543 3467788777777753 344444432 4666666666655432 11
Q ss_pred ----EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 296 ----EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 296 ----eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.++.+. +++..+.+.++++.+|+.++.+++
T Consensus 149 g~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~ 182 (201)
T 2yjz_A 149 ASRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS 182 (201)
Confidence 344442 577889999999999999998875
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=107.93 Aligned_cols=118 Identities=18% Similarity=0.351 Sum_probs=80.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.. ...+ ...++..+++++++++|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~---~~~~---------~~~~i~~t~d~~a~~~a 68 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAA---AELG---------VDIRISGSNSYEDMRGS 68 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHH---HHHT---------CCCCEEEESCGGGGTTC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhh---hhcC---------CCeEEEECCCHHHhCCC
Confidence 79999999999999999999898 79999999887754222221110 0000 11246666778889999
Q ss_pred CEEEEec--------------cCChhhHHHHHHHHHhhcCCCc--eeeecCCCCCHHHHHhhcc-----Cccceecc
Q 008576 228 DMVIEAI--------------IENVSLKQQIFADLEKYCPPHC--ILASNTSTIDLNLIGERTY-----SKDRIVGA 283 (561)
Q Consensus 228 DlVieav--------------~e~~~~k~~v~~~l~~~~~~~~--ii~s~tS~~~~~~l~~~~~-----~~~r~ig~ 283 (561)
|+||+++ ..+..+++++.+++.+++ +++ |++|| |+..+...+. .|.|++|+
T Consensus 69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN----Pv~~~t~~~~k~~~~p~~rviG~ 140 (308)
T 2d4a_B 69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN----PVDAMTYVMYKKTGFPRERVIGF 140 (308)
T ss_dssp SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS----SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC----chHHHHHHHHHhcCCChhhEEEe
Confidence 9999993 456668999999999987 555 33344 5554433331 25677765
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-10 Score=117.91 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=73.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++++.+++++++.
T Consensus 347 llLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~--------------------------------------- 387 (440)
T 2np9_A 347 VILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG--------------------------------------- 387 (440)
T ss_dssp HHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---------------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---------------------------------------
Confidence 57999999999999999999999999999999999887643
Q ss_pred CcHHHHHHHHHHhhcCChH---HHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPR---AGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~---~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.++..+|++++.+.. +.+ +.+..|...+..++.|+|+++++.+|++||+
T Consensus 388 ~Av~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~ 439 (440)
T 2np9_A 388 DAVLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP 439 (440)
T ss_dssp HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 266788898887754 443 4566777888999999999999999999985
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=9.3e-10 Score=110.41 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=83.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+. .|
T Consensus 204 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~--~p----------------------------------- 246 (305)
T 3m6n_A 204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR--TP----------------------------------- 246 (305)
T ss_dssp HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT--CH-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh--Ch-----------------------------------
Confidence 57899999999999999999999999999999999999975 23
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.....+++++++.|.+.+..++.|+|....+..++.+...++
T Consensus 247 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~~ 299 (305)
T 3m6n_A 247 HAWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRR 299 (305)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhc
Confidence 27788999999999999999999999999999999998877666665554443
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=98.91 E-value=7.7e-10 Score=108.55 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=69.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 181 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 224 (263)
T 2j5g_A 181 FLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQP-T----------------------------------- 224 (263)
T ss_dssp HHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr 129 (561)
.+...+|++++.....++++++..|. ..+++++|++||
T Consensus 225 ~a~~~~K~~l~~~~~~~l~~~l~~e~-----------~~eg~~af~~~~ 262 (263)
T 2j5g_A 225 LNLRYTRVALTQRLKRLVNEGIGYGL-----------ALEGITATDLRN 262 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHH-----------HHhhHHHHHhcc
Confidence 37778899998877667777766654 459999999987
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.6e-09 Score=103.24 Aligned_cols=102 Identities=23% Similarity=0.305 Sum_probs=71.1
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
++.+||+|||+|.||.++|..++..|+ +|+++|++ ++.++.....+.... .......++..++++
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~d~ 73 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTSDY 73 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEESCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcCCH
Confidence 345799999999999999999999999 99999999 444432211111110 011122456667789
Q ss_pred cccCCCCEEEEecc--C------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 222 ESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 222 ~~l~~aDlVieav~--e------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++++||+||+++. . +..+.+++.+++.++++ +++++
T Consensus 74 ~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vl 124 (315)
T 3tl2_A 74 ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIV 124 (315)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999999999972 1 33466777788888864 55443
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-09 Score=105.74 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=74.7
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+.+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.+.. .. ....++..++++++
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~----~~---------~~~~~i~~t~d~~~ 86 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGS----LF---------LHTAKIVSGKDYSV 86 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHG----GG---------SCCSEEEEESSSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhh----hc---------ccCCeEEEcCCHHH
Confidence 56899999999999999999999997 89999999987765332222211 00 01235666788989
Q ss_pred cCCCCEEEEec--------------cCChhhHHHHHHHHHhhcCCCceee
Q 008576 224 FKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 224 l~~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++||+||++. .++..+++++.+++.+++ ++++++
T Consensus 87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~il 135 (330)
T 3ldh_A 87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKE 135 (330)
T ss_dssp CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEE
Confidence 99999999874 345678889999999985 555443
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.2e-09 Score=104.98 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=81.4
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++++||+|||+|.||.++|..|+..|+ +|+++|++++.++.....+.+... .. + ...++..++++++
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~-~~--~---------~~~~v~~t~d~~a 72 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSP-VD--G---------FDAKFTGANDYAA 72 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHH-HH--T---------CCCCEEEESSGGG
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhh-hc--C---------CCCEEEEeCCHHH
Confidence 456799999999999999999999999 999999999876532222221110 00 0 1124556678889
Q ss_pred cCCCCEEEEecc--C------------ChhhHHHHHHHHHhhcCCCceee--ecCCCCCHHHHHhhcc-Cccceecc
Q 008576 224 FKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTY-SKDRIVGA 283 (561)
Q Consensus 224 l~~aDlVieav~--e------------~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~-~~~r~ig~ 283 (561)
+++||+||.++. . +..+.+++.+++.+++ ++++++ ||........+..... .+.|++|+
T Consensus 73 ~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~ 148 (324)
T 3gvi_A 73 IEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFSGLPAHKVVGM 148 (324)
T ss_dssp GTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhcCCCHHHEEee
Confidence 999999999963 1 3346677778888887 566543 4433222222222222 23667665
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.1e-09 Score=104.99 Aligned_cols=165 Identities=14% Similarity=0.083 Sum_probs=103.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCH-HHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQ-EKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~-~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.||+.+|..|+++|++|++|++++. +... +.|. +.. ..-...+..+..+++.+++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~-----------~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~ 69 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVK-----------AKGIRIRSATLGDYTFRPAAVVRSAAELE 69 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHH-----------HHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHH-----------hCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence 5999999999999999999999999999999862 2211 1121 000 00000001233445665554
Q ss_pred -CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHHhhccCccceeccc-cc-----CCCCC---CC-
Q 008576 226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAH-FF-----SPAHV---MP- 293 (561)
Q Consensus 226 -~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~ig~h-~~-----~P~~~---~~- 293 (561)
++|+||.|||... ..++++++.+.++++++|++...++. ...+.+.++.. ++++.- ++ .|-.. .+
T Consensus 70 ~~~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~ 146 (320)
T 3i83_A 70 TKPDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYG 146 (320)
T ss_dssp SCCSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCC
Confidence 8999999998543 34688899999999998888888886 45666666533 444321 21 22111 11
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 328 (561)
.+.+-.....+.+..+.+.+++...|.......|.
T Consensus 147 ~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di 181 (320)
T 3i83_A 147 RLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENI 181 (320)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCH
T ss_pred EEEEecCCCCccHHHHHHHHHHHhCCCCceECHHH
Confidence 11122222334567788888999888777666663
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.2e-09 Score=104.51 Aligned_cols=126 Identities=20% Similarity=0.340 Sum_probs=80.6
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++++||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.+... ......++..++++++
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~------------~~~~~~~v~~t~d~~a 70 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP------------IEGVDFKVRGTNDYKD 70 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh------------hcCCCcEEEEcCCHHH
Confidence 346799999999999999999999998 999999999876532211111100 0001124555677889
Q ss_pred cCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceee--ecCCCCCHHHHHhhccC-ccceecc
Q 008576 224 FKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGA 283 (561)
Q Consensus 224 l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (561)
+++||+||.+.. .+..+.+++.+++.+++ |+++++ ||........+...... +.|++|+
T Consensus 71 ~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~ 146 (321)
T 3p7m_A 71 LENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGVPDNKIVGM 146 (321)
T ss_dssp GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEE
T ss_pred HCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCCCHHHEEee
Confidence 999999999862 13456777888888887 555443 33322222222222222 3667765
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=101.13 Aligned_cols=121 Identities=20% Similarity=0.327 Sum_probs=78.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 223 (561)
|+||+|||+|.||.++|..|+.+| ++|+++|+++++++.....+.... . .. ...+.. ++++++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~----~--~~--------~~~~~~~~~d~~~ 66 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM----A--NL--------EAHGNIVINDWAA 66 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG----G--GS--------SSCCEEEESCGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhh----h--hc--------CCCeEEEeCCHHH
Confidence 369999999999999999999999 799999999987765432221110 0 00 011222 356677
Q ss_pred cCCCCEEEEeccCCh------------------hhHHHHHHHHHhhcCCCceee--ecCCCCCHHHHHhhc--cCcccee
Q 008576 224 FKDVDMVIEAIIENV------------------SLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERT--YSKDRIV 281 (561)
Q Consensus 224 l~~aDlVieav~e~~------------------~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~--~~~~r~i 281 (561)
+++||+||+|++... .+++++++++.++++ +++|+ ||.... ++.+.... -.+.|++
T Consensus 67 ~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~-~~~~~~~~~~~~~~rvi 144 (309)
T 1hyh_A 67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDV-ITALFQHVTGFPAHKVI 144 (309)
T ss_dssp GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHH-HHHHHHHHHCCCGGGEE
T ss_pred hCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHH-HHHHHHHhcCCCHHHEe
Confidence 999999999998633 246788888988775 55443 333222 22333221 2356777
Q ss_pred cc
Q 008576 282 GA 283 (561)
Q Consensus 282 g~ 283 (561)
|+
T Consensus 145 g~ 146 (309)
T 1hyh_A 145 GT 146 (309)
T ss_dssp EC
T ss_pred ec
Confidence 76
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-08 Score=99.67 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=68.5
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.||.++|..|+.+ |++|+++|+++++++.....+.+... ......++..++++++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~~l~ 68 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA 68 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh------------cccCCcEEEECCCHHHHC
Confidence 4899999999999999999985 79999999998877642211111000 000123466667887799
Q ss_pred CCCEEEEeccCC--------------hhhHHHHHHHHHhhcCCCcee
Q 008576 226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 226 ~aDlVieav~e~--------------~~~k~~v~~~l~~~~~~~~ii 258 (561)
+||+||+|++.. ..+.+++.+.+.+++ +++++
T Consensus 69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~v 114 (310)
T 1guz_A 69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPII 114 (310)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEE
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEE
Confidence 999999999532 145567778888886 45533
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-09 Score=102.73 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=65.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 159 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 202 (232)
T 3ot6_A 159 SVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKIN-M----------------------------------- 202 (232)
T ss_dssp HHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~ 109 (561)
.|...+|++++.....+++++++.|.+.|
T Consensus 203 ~a~~~~K~~l~~~~~~~l~~~l~~E~~~~ 231 (232)
T 3ot6_A 203 NAHKKTKLKVRKGLLDTLDAAIEQDRQHM 231 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence 37888999999998888999999998765
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-09 Score=105.37 Aligned_cols=84 Identities=6% Similarity=0.033 Sum_probs=65.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCC-----chHHHHH-HHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHH
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPN-----QLVSTAR-QWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQAR 74 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~-----~l~~~A~-~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 74 (561)
|+|||++|+|+||+++||||+|||++ ++++.+. ++|++|+..+ |
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~-~----------------------------- 226 (280)
T 1pjh_A 177 CLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY-L----------------------------- 226 (280)
T ss_dssp HHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC-H-----------------------------
T ss_pred HHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCC-H-----------------------------
Confidence 57899999999999999999999986 7888885 9999998842 2
Q ss_pred hhCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 75 KQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 75 ~~~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|++++.... ..++ ...++|+++++.+|.+||++.
T Consensus 227 ------~a~~~~K~~l~~~~~----~~l~--------~~~~~d~~e~~~af~~kr~~e 266 (280)
T 1pjh_A 227 ------PSCLGMKKLLKSNHI----DAFN--------KANSVEVNESLKYWVDGEPLK 266 (280)
T ss_dssp ------HHHHHHHHHHHTTTH----HHHH--------HHHHHHHHHHHHHHHHTHHHH
T ss_pred ------HHHHHHHHHHHHhHH----HHHH--------HhhhHHHHHHHHHHhCCccHH
Confidence 367778888876542 2222 125788999999999988773
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-09 Score=106.49 Aligned_cols=116 Identities=15% Similarity=0.016 Sum_probs=81.2
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
++|+|||+|.||.++|..+. ..|++|++||++++..+.+. +.| +...++++ .++
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~ 219 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-----------ALG-------------AERVDSLEELAR 219 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-----------hcC-------------cEEeCCHHHHhc
Confidence 58999999999999999999 99999999999876543311 111 11223443 368
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhccCc-cceecccccCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTYSK-DRIVGAHFFSP 288 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~~~-~r~ig~h~~~P 288 (561)
+||+|++++|.+.+.+.-+.+++.+.++++++|+ |+|+. ....+.+.+... -...|+++|.+
T Consensus 220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gaili-n~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 285 (348)
T 2w2k_A 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIV-NTARGPVISQDALIAALKSGKLLSAGLDVHEF 285 (348)
T ss_dssp HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEE-ECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence 8999999999877665544455666789999886 55543 345676666442 22367888874
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=103.28 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=77.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
.++||+|||+|.||.++|..++..|. +|+++|++++.++.....+.+ ...... ...++. ++++++
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~------~~~~~~------~~~~i~-~~~~~a 71 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH------GKVFAP------KPVDIW-HGDYDD 71 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH------HTTSSS------SCCEEE-ECCGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHH------HhhhcC------CCeEEE-cCcHHH
Confidence 45799999999999999999998875 899999998755432111111 000000 001222 245678
Q ss_pred cCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc----c-Cccceecc
Q 008576 224 FKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----Y-SKDRIVGA 283 (561)
Q Consensus 224 l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~-~~~r~ig~ 283 (561)
+++||+||++++ ++..+++++.+++.++++ +++++.. +-|+..+...+ . .+.|++|+
T Consensus 72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~~iv~--tNPv~~~~~~~~~~s~~p~~rviG~ 147 (316)
T 1ldn_A 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF-QGLFLVA--TNPVDILTYATWKFSGLPHERVIGS 147 (316)
T ss_dssp TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC-CSEEEEC--SSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCC-CCEEEEe--CCchHHHHHHHHHHhCCCHHHEEec
Confidence 999999999953 344789999999999874 5533221 22555443332 1 24567665
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-08 Score=100.98 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=71.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccc-cccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLL-TGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i-~~~~~~~~- 223 (561)
++||+|||+|.||..+|..|+++|++|++||++++.++...+. .+. +...... ...++ ..++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~ 72 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR----------GAIIAEGPGLA-GTAHPDLLTSDIGLA 72 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----------TSEEEESSSCC-EEECCSEEESCHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhc----------CCeEEeccccc-cccccceecCCHHHH
Confidence 4699999999999999999999999999999999887653311 010 0000000 00122 23445543
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
+.++|+||+|+|... ..++++++.+.++++++|++.
T Consensus 73 ~~~~D~vi~~v~~~~--~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 73 VKDADVILIVVPAIH--HASIAANIASYISEGQLIILN 108 (359)
T ss_dssp HTTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEES
T ss_pred HhcCCEEEEeCCchH--HHHHHHHHHHhCCCCCEEEEc
Confidence 789999999999654 368889999999999977655
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=102.57 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIY 519 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~ 519 (561)
++-||.||++.+++|||+++++||++ +++|||.++..|+|+|+..-|||+++|..|.+...
T Consensus 190 ~pGFi~NRl~~~~~~EA~~lv~eGva-s~edID~~~~~g~g~~~a~mGPf~~~Dl~G~~~~~ 250 (319)
T 3ado_A 190 IDGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLS 250 (319)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHHHHTTTSHHH
T ss_pred CCCEeHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCCcchhhhhhhcCccHHH
Confidence 45699999999999999999999999 89999999999999883334999999999976543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=99.75 Aligned_cols=107 Identities=25% Similarity=0.401 Sum_probs=73.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~ 222 (561)
.++||+|||+|.||..+|..|+.+|+ +|+++|++++.++.....+ ..+. +.. ..++..+++++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~--------~~~~~~~~------~~~v~~~~~~~ 71 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDM--------QHGSSFYP------TVSIDGSDDPE 71 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------HHTGGGST------TCEEEEESCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHH--------HhhhhhcC------CeEEEeCCCHH
Confidence 34699999999999999999999999 9999999987765211111 1110 000 12344444677
Q ss_pred ccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 223 SFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 223 ~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
++++||+||.++. ++..+++++++++.++ .++++|++.+.++..
T Consensus 72 ~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~ 129 (319)
T 1lld_A 72 ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI 129 (319)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence 8899999999993 1235677888888886 577777655544443
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.72 E-value=6e-09 Score=105.83 Aligned_cols=117 Identities=18% Similarity=0.074 Sum_probs=80.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
-++|+|||+|.||..+|..+...|++|++||++.+..+... +.+ +... +++ .++
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~ 209 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAA 209 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHh
Confidence 36899999999999999999999999999999875443211 111 1122 443 468
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhccC-ccceecccccCCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTYS-KDRIVGAHFFSPA 289 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~~-~~r~ig~h~~~P~ 289 (561)
+||+||+++|.+.+.+.-+.+++.+.++++++|+ |+|+. ....+.+.+.. .....++++|+|.
T Consensus 210 ~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailI-n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e 276 (330)
T 2gcg_A 210 QSDFIVVACSLTPATEGLCNKDFFQKMKETAVFI-NISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 276 (330)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred hCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence 9999999999876554433355666788899886 55543 33566666532 2334678888654
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=106.93 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=76.7
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCCcEEEEe---CCHHHHHHHHHHHHHHHHHHHHcCCC-----CH-HHHHhhhcccc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SNYPVILKE---VNEKFLEAGIGRVRANLQSRVKKGKM-----TQ-EKFEKTISLLT 216 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G~~V~l~d---~~~~~~~~~~~~i~~~~~~~~~~g~~-----~~-~~~~~~~~~i~ 216 (561)
++||+|||+|.||..+|..|+. +|++|++|| ++++.++.+. +.+.+ .. .+......++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~ 70 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKAL-----------GADELTVIVNEKDGTQTEVKSRPK 70 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHH-----------TTSCEEEEEECSSSCEEEEEECCS
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHH-----------hhccceeeeecCCCccceeeccce
Confidence 3699999999999999999998 599999999 8777665422 11110 00 00000012333
Q ss_pred -cccccc-ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 217 -GVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 217 -~~~~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
.+++++ .+.+||+||+|||.. ..+++++++.++++++++|++++++..++
T Consensus 71 ~~~~~~~~a~~~aD~Vilav~~~--~~~~v~~~l~~~l~~~~ivv~~~~~~G~~ 122 (404)
T 3c7a_A 71 VITKDPEIAISGADVVILTVPAF--AHEGYFQAMAPYVQDSALIVGLPSQAGFE 122 (404)
T ss_dssp EEESCHHHHHTTCSEEEECSCGG--GHHHHHHHHTTTCCTTCEEEETTCCTTHH
T ss_pred EEeCCHHHHhCCCCEEEEeCchH--HHHHHHHHHHhhCCCCcEEEEcCCCccHH
Confidence 455664 478999999999954 46889999999999999998876655533
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=103.52 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=69.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||+++++++|.++|++|+..+ |
T Consensus 218 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~-~----------------------------------- 261 (333)
T 3njd_A 218 LLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMP-V----------------------------------- 261 (333)
T ss_dssp HHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcC-ChHHHHH------------HHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVS-GPRAGLQ------------KEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~-~~~~~l~------------~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++.+... ++..... .|.+.|... ..++++++|++||.+...
T Consensus 262 ~al~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~----~~~~g~~a~~ekR~~~f~ 324 (333)
T 3njd_A 262 NQLIMAKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVAT----AREHGFREAVRRRDEPMG 324 (333)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTTSHHHHHHHHH----HHHHCHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChHHHHHHHH----hhhHHHHHHHHhcCCCCC
Confidence 3777888888887643 3333211 122233322 235677888999988654
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.1e-09 Score=106.84 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=77.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||+|.||.++|..+...|++|++||++++..+ + .....+++ .+++
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~ 215 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN 215 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence 5899999999999999999999999999999875311 1 11223443 4789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhccC-ccceecccccC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFS 287 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~ 287 (561)
||+|++++|.+.+.+.-+-+++.+.++++++|++.+++..+ ..+.+.+.. ..+..++++|.
T Consensus 216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 99999999977655443334455567889988543333332 466666643 34567788876
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-09 Score=101.49 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=66.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 202 (233)
T 3r6h_A 159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLN-Q----------------------------------- 202 (233)
T ss_dssp HHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQ 110 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~ 110 (561)
.+...+|++++.....+++++++.|.+.|.
T Consensus 203 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~f~ 232 (233)
T 3r6h_A 203 QAHNATKLRARAEALKAIRAGIDGIEAEFG 232 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTSHHHHC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 377889999999888889999999988774
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.6e-09 Score=105.69 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=79.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||+|.||.++|..+...|++|++||++++. +... +.| +.. .++ +.++
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~ 203 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLR 203 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHh
Confidence 468999999999999999999999999999998865 3211 112 111 234 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HH--HHHhhccC-ccceecccccCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LN--LIGERTYS-KDRIVGAHFFSP 288 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~--~l~~~~~~-~~r~ig~h~~~P 288 (561)
+||+||+++|.+.+.+.-+.+++.+.++++++|+ |+|..+ ++ .+.+.+.. +-...|+|+|+|
T Consensus 204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailI-n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ 269 (334)
T 2dbq_A 204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILI-NIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269 (334)
T ss_dssp HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence 9999999999877654433355667788899885 444433 33 46555543 223367888873
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=9.8e-08 Score=100.85 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=55.6
Q ss_pred ceEEEEEcCccc--hHHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 147 VKKVAILGGGLM--GSGIATALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~m--G~~iA~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
.+||+|||+|.| |.++|..|+.. |++|++||+++++++...... ........ ...+++.++|
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~----~~~l~~~~--------~~~~I~~ttD 70 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIA----KKYVEEVG--------ADLKFEKTMN 70 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHH----HHHHHHTT--------CCCEEEEESC
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHH----HHHhccCC--------CCcEEEEECC
Confidence 359999999997 56667778754 889999999999887754332 22221111 1246777888
Q ss_pred c-cccCCCCEEEEecc
Q 008576 221 Y-ESFKDVDMVIEAII 235 (561)
Q Consensus 221 ~-~~l~~aDlVieav~ 235 (561)
+ +++++||+||++++
T Consensus 71 ~~eal~dAD~VIiaag 86 (480)
T 1obb_A 71 LDDVIIDADFVINTAM 86 (480)
T ss_dssp HHHHHTTCSEEEECCC
T ss_pred HHHHhCCCCEEEECCC
Confidence 7 67999999999995
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-08 Score=103.99 Aligned_cols=112 Identities=22% Similarity=0.175 Sum_probs=77.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||+|.||.++|..+...|++|++||++++. +.+. +.| +... +++ .+++
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~e~l~~ 200 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-----------ELK-------------ARYM-DIDELLEK 200 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-----------HHT-------------EEEC-CHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-----------hcC-------------ceec-CHHHHHhh
Confidence 58999999999999999999999999999998865 2211 111 1112 343 3688
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-H--HHHHhhccC-ccceecccccC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-L--NLIGERTYS-KDRIVGAHFFS 287 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~--~~l~~~~~~-~~r~ig~h~~~ 287 (561)
||+|++++|.+.+.+.-+-+++.+.++++ ++ .|+|... + ..+.+.+.. .....|+++|.
T Consensus 201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-il-in~srg~~vd~~aL~~aL~~~~i~gaglDv~~ 263 (333)
T 2d0i_A 201 SDIVILALPLTRDTYHIINEERVKKLEGK-YL-VNIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263 (333)
T ss_dssp CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EE-EECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EE-EECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence 99999999987665544444555677888 66 4555433 2 245555543 34457889887
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-09 Score=108.54 Aligned_cols=111 Identities=21% Similarity=0.175 Sum_probs=78.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
.||+|||+|.||++||..|+++|+ +|++|.++++...+.. .+.+....++..+-++ -.+..++.+++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~---~e~in~~~~N~~YLpg--v~Lp~~i~~t~ 109 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKL---TEIINTRHQNVKYLPG--ITLPDNLVANP 109 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBH---HHHHTTTCCBTTTBTT--CCCCSSEEEES
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHH---HHHHHhcCcCcccCCC--CcCCCCcEEeC
Confidence 499999999999999999999875 4999999875311100 0111111111111111 01235677888
Q ss_pred ccc-ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
|++ .+++||+||.+|| .+..+.+++++.+++++++++++.+.++
T Consensus 110 dl~~al~~ad~ii~avP--s~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 110 DLIDSVKDVDIIVFNIP--HQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp CHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred CHHHHHhcCCEEEEECC--hhhhHHHHHHhccccCCCceeEEecccc
Confidence 884 5899999999999 6788999999999999999888877765
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.3e-08 Score=96.29 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=68.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.||.++|..|+.+|+ +|++||++++.++...-.+.+.. .. +. ...++..++|+++++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~----~~--~~------~~~~i~~t~d~~a~~ 68 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA----AG--ID------KYPKIVGGADYSLLK 68 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH----HT--TT------CCCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhh----hh--cC------CCCEEEEeCCHHHhC
Confidence 489999999999999999999998 99999999988663221111110 00 00 012456566788899
Q ss_pred CCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceeee
Q 008576 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+||+||.+..- +..+.+++.+++.+++ |+++++.
T Consensus 69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iiv 116 (294)
T 1oju_A 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILV 116 (294)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEE
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE
Confidence 99999998732 2235566667788875 5565543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-07 Score=94.28 Aligned_cols=101 Identities=21% Similarity=0.337 Sum_probs=70.3
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
.+.+||+|||+|.||.++|..++.+|+ +|+++|+++++++.....+.... . +. ....+..+++++
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~------~-~~------~~~~i~~~~d~~ 83 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS------L-FL------KTPKIVSSKDYS 83 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG------G-GC------SCCEEEECSSGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh------h-cc------CCCeEEEcCCHH
Confidence 346799999999999999999999997 89999999887665322221110 0 00 012344567888
Q ss_pred ccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceee
Q 008576 223 SFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 223 ~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++||+||.+.- .+..+.+++.+.+.++++ +++++
T Consensus 84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~vl 133 (331)
T 4aj2_A 84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-QCKLL 133 (331)
T ss_dssp GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 9999999998862 123467777788888854 55443
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-08 Score=98.11 Aligned_cols=83 Identities=17% Similarity=0.128 Sum_probs=67.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 215 (257)
T 1szo_A 172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKP-L----------------------------------- 215 (257)
T ss_dssp HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.+...+|++++.....+++++++.|.+. +++.+|-.+.+
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~l~~~~~~-----------eg~~a~~~~~~ 254 (257)
T 1szo_A 216 LARRYARKVLTRQLRRVMEADLSLGLAH-----------EALAAIDLGME 254 (257)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHH-----------HHHHHHHHC--
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHH-----------hhhhhhhcccc
Confidence 3777889999887777777777766533 66888876543
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.4e-08 Score=103.55 Aligned_cols=149 Identities=9% Similarity=0.050 Sum_probs=95.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||+|.||.++|..+...|++|++||++... +.+. +.|. ... ++ +.++
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g~-------------~~~-~l~e~~~ 195 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLGI-------------ELL-SLDDLLA 195 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHTC-------------EEC-CHHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcCc-------------EEc-CHHHHHh
Confidence 369999999999999999999999999999998642 2111 1121 111 33 3477
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccC------ccceecccccC--CCCCCCeE
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYS------KDRIVGAHFFS--PAHVMPLL 295 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~------~~r~ig~h~~~--P~~~~~lv 295 (561)
+||+|+.|+|...+.+.-+-+++.+.++++++|+..+.+-++. .+.+.+.. .-.|++.||.. |-...+.+
T Consensus 196 ~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~v 275 (529)
T 1ygy_A 196 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQV 275 (529)
T ss_dssp HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTE
T ss_pred cCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCE
Confidence 8999999999765443333234666788999887555444444 34455532 12356666642 22335667
Q ss_pred EEEeCCC-CcHHHHHH-----HHHHHHhcCCc
Q 008576 296 EIVRTNQ-TSPQVIVD-----LLDIGKKIKKT 321 (561)
Q Consensus 296 eiv~~~~-t~~e~~~~-----~~~l~~~lGk~ 321 (561)
.++|+.. ++++..+. +.++...++..
T Consensus 276 ilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 276 VVTPHLGASTAEAQDRAGTDVAESVRLALAGE 307 (529)
T ss_dssp EECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 7888877 67777664 55555555443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=93.75 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=66.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.+... -.+ ...++..++++++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~---~~~---------~~~~v~~~~~~~a~~ 68 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSP---IHG---------FDTRVTGTNDYGPTE 68 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHH---HHT---------CCCEEEEESSSGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccc---ccC---------CCcEEEECCCHHHhC
Confidence 489999999999999999999987 899999999876542212211100 000 001344456788999
Q ss_pred CCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+||+||.+..- +..+.+++.+.+.+++ |+++++
T Consensus 69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vi 115 (314)
T 3nep_X 69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTII 115 (314)
T ss_dssp TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEE
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEE
Confidence 99999998732 2235566667777776 455443
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-08 Score=100.21 Aligned_cols=125 Identities=13% Similarity=-0.056 Sum_probs=83.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|++||++++..+. ....++++ .+++
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~ 173 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ 173 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence 69999999999999999999999999999998643210 11233443 4788
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhcc-Cccceeccc-----ccCCCCCCCeEEEE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAH-----FFSPAHVMPLLEIV 298 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h-----~~~P~~~~~lveiv 298 (561)
||+|+.++|.+.+...-+-++..+.++++++|+..+.+- .-..+.+.+. ..-...++- |.+|-+..+.+.++
T Consensus 174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT 253 (290)
T 3gvx_A 174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS 253 (290)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence 999999999766655444466677889999886433332 2345555553 222333333 33444445667777
Q ss_pred eCC
Q 008576 299 RTN 301 (561)
Q Consensus 299 ~~~ 301 (561)
|+-
T Consensus 254 PHi 256 (290)
T 3gvx_A 254 PHV 256 (290)
T ss_dssp CSC
T ss_pred ccc
Confidence 763
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.49 E-value=6e-07 Score=90.15 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=75.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||+.+|..|+ +|++|++|+++++.++... +.|......-......+ ..+.+.+..+
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~-----------~~G~~~~~~~~~~~~~~--~~~~~~~~~~ 68 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQ-----------SEGIRLYKGGEEFRADC--SADTSINSDF 68 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHH-----------HHCEEEEETTEEEEECC--EEESSCCSCC
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHH-----------hCCceEecCCCeecccc--cccccccCCC
Confidence 58999999999999999999 9999999999998766532 12211000000000011 1112346789
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH-HHHhhccCcccee
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIV 281 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~i 281 (561)
|+||.||+ .....++++++.+. .+++ |+|...++... .+.+.++. .+++
T Consensus 69 D~vilavK--~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~-~~vl 118 (307)
T 3ego_A 69 DLLVVTVK--QHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVG-HSIY 118 (307)
T ss_dssp SEEEECCC--GGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCS-CEEE
T ss_pred CEEEEEeC--HHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCC-CcEE
Confidence 99999997 44566778888765 6677 77888888876 44444333 3444
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.6e-07 Score=95.83 Aligned_cols=99 Identities=21% Similarity=0.238 Sum_probs=69.4
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+||+|||+|.+ |.++|..|+.. +.+|++||+++++++... .+.+.+.... + ...++..++|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~-~~~~~~l~~~--~---------~~~~I~~t~D~ 96 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA-GACDVFIREK--A---------PDIEFAATTDP 96 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHH-HHHHHHHHHH--C---------TTSEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHH-HHHHHHhccC--C---------CCCEEEEECCH
Confidence 59999999998 66688788887 678999999999877643 2222211111 1 12357777787
Q ss_pred -cccCCCCEEEEeccCC----------------------------------hhhHHHHHHHHHhhcCCCceee
Q 008576 222 -ESFKDVDMVIEAIIEN----------------------------------VSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 222 -~~l~~aDlVieav~e~----------------------------------~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++++||+||.+++.. ..+.+++.+++.++++ +++++
T Consensus 97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P-~A~ii 168 (472)
T 1u8x_X 97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSP-DAWML 168 (472)
T ss_dssp HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCC-CeEEE
Confidence 6799999999999741 1246677788888874 56554
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-08 Score=98.24 Aligned_cols=156 Identities=14% Similarity=0.060 Sum_probs=97.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc-CC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-KD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-~~ 226 (561)
+||+|||+|.||+.+|..|+++|++|++|+++++.++.. ...|... ..+. .++.+.+ .+
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~~~--------~~~~-~~~~~~~~~~ 62 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHAPA--------QDIV-VKGYEDVTNT 62 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTSCC--------EEEE-EEEGGGCCSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCeec--------ccee-cCchHhcCCC
Confidence 589999999999999999999999999999996543210 0111100 1111 1223444 78
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceeccc------ccCCCCCC-CeEEEEe
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAH------FFSPAHVM-PLLEIVR 299 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h------~~~P~~~~-~lveiv~ 299 (561)
+|+||.||+ .....++++++.+.++++++|++...++...+. ++. .++++.- ...|-... ....+..
T Consensus 63 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~~-~~v~~g~~~~~a~~~~pg~v~~~~~~~~~ 136 (294)
T 3g17_A 63 FDVIIIAVK--THQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IPF-KNVCQAVVYISGQKKGDVVTHFRDYQLRI 136 (294)
T ss_dssp EEEEEECSC--GGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CCC-SCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEeCC--ccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CCC-CcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence 999999998 446678889999999999988888888776553 322 3443321 11221110 0011111
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEEEcccccch
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA 332 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i 332 (561)
+ +.+..+.+.+++...|.......|..+..
T Consensus 137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~ 166 (294)
T 3g17_A 137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAI 166 (294)
T ss_dssp E---CSHHHHHHHHHTTTSSCEEEEESSHHHHH
T ss_pred C---ccHHHHHHHHHHHhCCCceEEChHHHHHH
Confidence 2 24566777778887776666666644433
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.4e-08 Score=96.95 Aligned_cols=73 Identities=22% Similarity=0.256 Sum_probs=59.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++|+..+ |
T Consensus 179 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 222 (279)
T 3t3w_A 179 ILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMP-P----------------------------------- 222 (279)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcC-ChHHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDF 109 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~-~~~~~l~~E~~~~ 109 (561)
.+...+|++++.+... +++++++.+....
T Consensus 223 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 252 (279)
T 3t3w_A 223 FALRQAKRAVNQTLDVQGFYAAIQSVFDIH 252 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHhhHH
Confidence 3777889998887643 5666665554433
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.8e-07 Score=91.96 Aligned_cols=99 Identities=23% Similarity=0.281 Sum_probs=67.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-cccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~ 222 (561)
+.+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.+.. .... ..+. .+++++
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~------~~~~--------~~v~i~~~~~~ 69 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGK------AFAP--------QPVKTSYGTYE 69 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTG------GGSS--------SCCEEEEECGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcc------cccc--------CCeEEEeCcHH
Confidence 45799999999999999999999997 89999999987765322221110 0000 1112 245678
Q ss_pred ccCCCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 223 SFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 223 ~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++||+||.++.. +..+.+++.+.+.++++ +++++
T Consensus 70 a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vl 119 (326)
T 3pqe_A 70 DCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFL 119 (326)
T ss_dssp GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEE
T ss_pred HhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEE
Confidence 89999999998732 22345666677877765 55544
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=4.4e-07 Score=89.99 Aligned_cols=99 Identities=16% Similarity=0.275 Sum_probs=67.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..|+.++. ++.++|++++.++.-.-.+.+ ....+ .....+..++++++++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h------~~~~~------~~~~~i~~~~d~~~~~ 68 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH------AAAGI------DKYPKIVGGADYSLLK 68 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHH------HHGGG------TCCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhc------ccccC------CCCCeEecCCCHHHhC
Confidence 589999999999999999998875 899999998765432211111 10000 0012345567889999
Q ss_pred CCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCceee
Q 008576 226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+||+||.+. | .|..+.+++.+++.+++++ ++++
T Consensus 69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~-aivl 115 (294)
T 2x0j_A 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPE-SKIL 115 (294)
T ss_dssp TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTT-CEEE
T ss_pred CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCc-eEEE
Confidence 999999876 2 1445677777888888654 4443
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-07 Score=96.01 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=54.8
Q ss_pred ceEEEEEcCccc--hHHHHHHHHh----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 147 VKKVAILGGGLM--GSGIATALIL----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~m--G~~iA~~la~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
.+||+|||+|.| |.+|+..|+. .| +|++||+++++++.... +.+ .+.. ...+++.++|
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~~---------~l~~-----~~~~I~~TtD 68 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IGN---------HSGN-----GRWRYEAVST 68 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HHT---------TSTT-----SCEEEEEESS
T ss_pred CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HHH---------HHhc-----cCCeEEEECC
Confidence 359999999997 6899998886 57 99999999998776421 111 1111 2346788888
Q ss_pred c-cccCCCCEEEEecc
Q 008576 221 Y-ESFKDVDMVIEAII 235 (561)
Q Consensus 221 ~-~~l~~aDlVieav~ 235 (561)
+ +++++||+||++++
T Consensus 69 ~~eAl~dADfVI~air 84 (450)
T 3fef_A 69 LKKALSAADIVIISIL 84 (450)
T ss_dssp HHHHHTTCSEEEECCC
T ss_pred HHHHhcCCCEEEeccc
Confidence 8 56899999999994
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.6e-07 Score=90.76 Aligned_cols=104 Identities=12% Similarity=-0.009 Sum_probs=70.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
-++|+|||.|.||.++|+.+...|++|++||+ +++.. .+. +.| +....++ +.+
T Consensus 146 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~ell 200 (320)
T 1gdh_A 146 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSLL 200 (320)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHHH
Confidence 36899999999999999999999999999999 77542 111 112 1112234 346
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC--CCHHHHHhhcc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 275 (561)
++||+|+.++|.+.+...-+-++..+.++++++|+..+++ +....+.+.+.
T Consensus 201 ~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~ 253 (320)
T 1gdh_A 201 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE 253 (320)
T ss_dssp HHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 7899999999976554332224456678899988654444 23345555553
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.6e-07 Score=90.85 Aligned_cols=101 Identities=18% Similarity=0.112 Sum_probs=68.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|+.+...|++|++||++++. +.+. +.|. .. .++ +.+++
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g~-------------~~-~~l~ell~~ 196 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVNG-------------KF-VDLETLLKE 196 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTTC-------------EE-CCHHHHHHH
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcCc-------------cc-cCHHHHHhh
Confidence 68999999999999999999999999999998765 2211 1221 11 133 34678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~ 274 (561)
||+|+.++|.+.+.+.-+-++..+.++++++++..+++-. -..+.+.+
T Consensus 197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL 246 (307)
T 1wwk_A 197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKAL 246 (307)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 9999999997665443222445566888998765444322 23455554
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.4e-07 Score=92.07 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=69.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||.|.||.++|+.+...|++|++||++++... +. +.|. .. .++ +.++
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g~-------------~~-~~l~ell~ 195 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KINA-------------KA-VSLEELLK 195 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTTC-------------EE-CCHHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcCc-------------ee-cCHHHHHh
Confidence 36899999999999999999999999999999876531 11 1221 11 133 3467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~ 275 (561)
+||+|+.++|...+...-+-++..+.++++++++..+++-. -..+.+.+.
T Consensus 196 ~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 247 (313)
T 2ekl_A 196 NSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK 247 (313)
T ss_dssp HCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred hCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 89999999997655432221345566788988765444422 335555553
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=86.45 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=66.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 222 (561)
..+||+|||+|.||.++|..|+..|+ +|+++|++++.++.....+.+.. ..+..+.. +.+++
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~---------------~~~~~~~i~~~~~~ 72 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL---------------PFTSPKKIYSAEYS 72 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG---------------GGSCCCEEEECCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh---------------hhcCCcEEEECcHH
Confidence 34699999999999999999999987 89999999887664322211100 00112222 44678
Q ss_pred ccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceee
Q 008576 223 SFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 223 ~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++||+||.+.. .+..+.+++.+.+.++++ +++++
T Consensus 73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~il 122 (326)
T 3vku_A 73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFL 122 (326)
T ss_dssp GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEE
T ss_pred HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEE
Confidence 8999999999862 133466777788888765 55444
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=89.21 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=70.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||.++|+.+...|++|++||++... +.+ .+.| +....+++ .+++
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~ 215 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADG-------------FAVAESKDALFEQ 215 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcC-------------ceEeCCHHHHHhh
Confidence 69999999999999999999999999999998632 111 1122 12233443 4788
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~ 274 (561)
||+|+.++|-+.+.+.-+-++..+.++++++|+ |+|.- .-..+.+.+
T Consensus 216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vd~~aL~~aL 265 (352)
T 3gg9_A 216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFV-NTSRAELVEENGMVTAL 265 (352)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEE-ECSCGGGBCTTHHHHHH
T ss_pred CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEE-ECCCchhhcHHHHHHHH
Confidence 999999999776655444456667789999886 44432 233555555
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=88.29 Aligned_cols=96 Identities=23% Similarity=0.300 Sum_probs=68.9
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 146 RVKKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
..+||+|||+ |.+|..+|..++..|. +|+++|+++++++.....+... .+. ..++..++++
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~--------~~~-------~~~i~~t~d~~ 71 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC--------GFE-------GLNLTFTSDIK 71 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH--------CCT-------TCCCEEESCHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC--------cCC-------CCceEEcCCHH
Confidence 4579999998 9999999999999984 8999999998765432222111 111 1245556666
Q ss_pred cccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCc
Q 008576 222 ESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 222 ~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
+++++||+||.++- .+..+.+++.+++.+++++..
T Consensus 72 ~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~ 120 (343)
T 3fi9_A 72 EALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK 120 (343)
T ss_dssp HHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 56999999999861 234567778888888886553
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.7e-07 Score=90.12 Aligned_cols=102 Identities=15% Similarity=0.018 Sum_probs=69.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|+.+...|++|++||++.+.. .+. ..|. .. .++ +.+++
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-----------~~g~-------------~~-~~l~ell~~ 219 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSA-----------SFGV-------------QQ-LPLEEIWPL 219 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHH-----------HTTC-------------EE-CCHHHHGGG
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhh-----------hcCc-------------ee-CCHHHHHhc
Confidence 689999999999999999999999999999986542 111 1221 11 133 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~ 275 (561)
||+|+.++|.+.+.+.-+-++..+.++++++++..+++-.+ ..+.+.+.
T Consensus 220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~ 270 (335)
T 2g76_A 220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQ 270 (335)
T ss_dssp CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHH
Confidence 99999999977655433335566778899987644443333 35555553
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-07 Score=90.38 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=71.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||+++...+.+. +.| +....++ +.+++
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 220 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEK-----------ETG-------------AKFVEDLNEMLPK 220 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHH-----------HHC-------------CEECSCHHHHGGG
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH-----------hCC-------------CeEcCCHHHHHhc
Confidence 6899999999999999999999999999999854332211 111 1223344 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~ 275 (561)
||+|+.++|-..+...-+-++..+.++++++|+ |++.- .-..+.+.+.
T Consensus 221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~ 271 (351)
T 3jtm_A 221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIV-NNARGAIMERQAVVDAVE 271 (351)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEE-ECcCchhhCHHHHHHHHH
Confidence 999999999766654444456667789999875 44432 2345555553
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.1e-07 Score=89.87 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=71.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|++||++++..+. . .......++ +.+++
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------~---------~~~~~~~~l~ell~~ 191 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH-----------------F---------HETVAFTATADALAT 191 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTT-----------------C---------SEEEEGGGCHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHh-----------------H---------hhccccCCHHHHHhh
Confidence 68999999999999999999999999999998653211 0 011112344 34788
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-..+...-+-++..+.++++++|+ |+|. +.-..+.+.+.
T Consensus 192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~ 242 (324)
T 3evt_A 192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLI-NIGRGPAVDTTALMTALD 242 (324)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEE-EcCCChhhhHHHHHHHHH
Confidence 999999999776655544466667789999875 4443 23345666553
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-06 Score=87.98 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=79.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||.|.||.++|..+...|++|++||++++ +. +. ....++ +.++
T Consensus 124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~~-------------~~~~~l~ell~ 173 (303)
T 1qp8_A 124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------PW-------------RFTNSLEEALR 173 (303)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------SS-------------CCBSCSHHHHT
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------Cc-------------ccCCCHHHHHh
Confidence 36899999999999999999999999999998764 10 10 112234 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhccC-ccceeccccc---CCCC------CCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFF---SPAH------VMP 293 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~---~P~~------~~~ 293 (561)
.||+|+.++|.+.+.+.-+-++..+.++++++++..+++-.+ ..+.+.+.. .-.-.|+..| .|.. ..+
T Consensus 174 ~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~ 253 (303)
T 1qp8_A 174 EARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLP 253 (303)
T ss_dssp TCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTST
T ss_pred hCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCC
Confidence 999999999977654433334566778899987643333222 345555532 2222444444 3321 234
Q ss_pred eEEEEeCCC
Q 008576 294 LLEIVRTNQ 302 (561)
Q Consensus 294 lveiv~~~~ 302 (561)
.+.++|+..
T Consensus 254 nviltPH~~ 262 (303)
T 1qp8_A 254 NVVATPWVA 262 (303)
T ss_dssp TEEECCSCS
T ss_pred CEEECCCcC
Confidence 555666543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.4e-06 Score=84.92 Aligned_cols=121 Identities=17% Similarity=0.269 Sum_probs=74.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.+||+|||+|.+|.+++..|+..|+ +|.++|+++++++.....+.+. ..... ..-.+.. ++++++
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~------~~~~~------~~~~v~~-~~~~a~ 72 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHA------TPYSP------TTVRVKA-GEYSDC 72 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHH------GGGSS------SCCEEEE-CCGGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhh------hhhcC------CCeEEEe-CCHHHh
Confidence 3699999999999999999998885 8999999988765322211111 00000 0012332 456789
Q ss_pred CCCCEEEEeccC--Ch------------hhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc----c-Cccceecc
Q 008576 225 KDVDMVIEAIIE--NV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----Y-SKDRIVGA 283 (561)
Q Consensus 225 ~~aDlVieav~e--~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~-~~~r~ig~ 283 (561)
++||+||.+++- ++ .+.+++.+++.+++ ++++++.. +-|+..+...+ . .+.|++|+
T Consensus 73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~t~~~~k~~~~p~~rviG~ 147 (317)
T 3d0o_A 73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVA--TNPVDILAYATWKFSGLPKERVIGS 147 (317)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHhCCCHHHEEec
Confidence 999999999842 22 45666777788885 55554432 24544333222 1 24566664
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-07 Score=92.17 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=60.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
=++|+|||.|.||.++|..+...|++|++||++++.. .+ .....++ +.++
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~~-------------~~~~~sl~ell~ 221 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------VD-------------WIAHQSPVDLAR 221 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------SC-------------CEECSSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------cC-------------ceecCCHHHHHh
Confidence 3699999999999999999999999999999986431 01 1112344 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT 274 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~ 274 (561)
+||+|+.++|...+.+.-+-++..+.++++++|+..+.+-.+ ..+.+.+
T Consensus 222 ~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL 272 (340)
T 4dgs_A 222 DSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEAL 272 (340)
T ss_dssp TCSEEEECC----------CHHHHHHTTTTCEEEECSCC------------
T ss_pred cCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHH
Confidence 999999999977666555556777788999988644333333 2444444
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-05 Score=69.96 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=66.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc--c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--S 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~ 223 (561)
.+++|.|+|+|.+|..+|..|...|++|+++|++++.++... +.+... ......-...++ .
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~-----------~~~~~~------~~gd~~~~~~l~~~~ 67 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLE-----------DEGFDA------VIADPTDESFYRSLD 67 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-----------HTTCEE------EECCTTCHHHHHHSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCCcE------EECCCCCHHHHHhCC
Confidence 357899999999999999999999999999999998876543 112100 000000000011 2
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l 270 (561)
+.++|+||.++++ .+....+...+.... ...|++...+......+
T Consensus 68 ~~~~d~vi~~~~~-~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l 112 (141)
T 3llv_A 68 LEGVSAVLITGSD-DEFNLKILKALRSVS-DVYAIVRVSSPKKKEEF 112 (141)
T ss_dssp CTTCSEEEECCSC-HHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred cccCCEEEEecCC-HHHHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence 5789999999983 444444444444444 55677655554444444
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.1e-06 Score=89.04 Aligned_cols=99 Identities=23% Similarity=0.316 Sum_probs=68.7
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC-----CCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
+||+|||+|.+ |.+++..|+.. +.+|++||+++ ++++... .+...+.. ..+ ...++..++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~-~~~~~~~~--~~~---------~~~~i~~t~ 75 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVG-ALAKRMVE--KAG---------VPIEIHLTL 75 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHH-HHHHHHHH--HTT---------CCCEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHH-HHHHHHHh--hcC---------CCcEEEEeC
Confidence 59999999999 88888888874 56899999999 8877633 22222111 111 013566677
Q ss_pred cc-cccCCCCEEEEeccCC----------------------------------hhhHHHHHHHHHhhcCCCceee
Q 008576 220 DY-ESFKDVDMVIEAIIEN----------------------------------VSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 220 ~~-~~l~~aDlVieav~e~----------------------------------~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
|+ +++++||+||.+++.. ..+.+++.+++.++++ +++++
T Consensus 76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P-~a~ii 149 (450)
T 1s6y_A 76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP-DAWLI 149 (450)
T ss_dssp CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCC-CeEEE
Confidence 87 6799999999998731 1356677788888874 55554
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-06 Score=88.43 Aligned_cols=102 Identities=16% Similarity=0.050 Sum_probs=68.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|++||++.+.... . ..| +....++ +.++.
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~g-------------~~~~~~l~ell~~ 223 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-R-----------ALG-------------LQRVSTLQDLLFH 223 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-H-----------HHT-------------CEECSSHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhH-h-----------hcC-------------CeecCCHHHHHhc
Confidence 58999999999999999999999999999987643110 0 111 1112233 34678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~ 274 (561)
||+|+.++|.+.+.+.-+-++..+.++++++|+..+++- ....+.+.+
T Consensus 224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL 273 (347)
T 1mx3_A 224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL 273 (347)
T ss_dssp CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence 999999999765544333355566788898876444432 234555555
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-06 Score=90.25 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=69.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|+.+...|++|++||++....+... +.| +....++ +.++.
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~~ 247 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYPV 247 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGGG
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHhc
Confidence 5899999999999999999999999999999864322211 112 1111233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+-++..+.++++++|+..+.+-.+ ..+.+.+.
T Consensus 248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 298 (393)
T 2nac_A 248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 298 (393)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence 99999999976655332224566678889987644433222 34666554
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-07 Score=91.40 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=69.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|+.||++++..+. . .......+++ .+++
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------~---------~~~~~~~~l~ell~~ 194 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG-----------------F---------DQVYQLPALNKMLAQ 194 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTT-----------------C---------SEEECGGGHHHHHHT
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhh-----------------h---------hcccccCCHHHHHhh
Confidence 69999999999999999999999999999998632111 0 0111123443 4789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~ 275 (561)
||+|+.++|-..+...-+-++..+.++++++|+ |+|.- .-..+.+.+.
T Consensus 195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~ 245 (324)
T 3hg7_A 195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILF-NVGRGNAINEGDLLTALR 245 (324)
T ss_dssp CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCchhhCHHHHHHHHH
Confidence 999999999766554434445566688899876 44432 2345665553
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.7e-06 Score=85.06 Aligned_cols=127 Identities=10% Similarity=0.047 Sum_probs=80.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|+.||++... +.+. ..|. . ..++ +.++.
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g~-------------~-~~~l~ell~~ 230 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLE-----------ENGV-------------E-PASLEDVLTK 230 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHH-----------HTTC-------------E-ECCHHHHHHS
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHh-----------hcCe-------------e-eCCHHHHHhc
Confidence 69999999999999999999999999999998532 1111 1221 1 1234 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhccCccceeccccc--CC------CCCCCeE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTYSKDRIVGAHFF--SP------AHVMPLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~~~~r~ig~h~~--~P------~~~~~lv 295 (561)
||+|+.++|-..+...-+-++..+.++++++|+ |+|.- .-..+.+.+....-..++--| .| -+..+.|
T Consensus 231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nv 309 (365)
T 4hy3_A 231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFI-LLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGF 309 (365)
T ss_dssp CSEEEECSCSSCC---CCCHHHHHTSCTTCEEE-ECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTE
T ss_pred CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEE-ECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCE
Confidence 999999999877665545466777789999876 45532 334566655432111333323 23 1234567
Q ss_pred EEEeCC
Q 008576 296 EIVRTN 301 (561)
Q Consensus 296 eiv~~~ 301 (561)
.++|+-
T Consensus 310 ilTPHi 315 (365)
T 4hy3_A 310 IRSAHR 315 (365)
T ss_dssp EECCSC
T ss_pred EECCcc
Confidence 777764
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.1e-07 Score=89.19 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=67.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||.|.||.++|+.+...|++|++||++.+..+ +. ..++ +.++
T Consensus 144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~ 192 (311)
T 2cuk_A 144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLK 192 (311)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHH
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHh
Confidence 36899999999999999999999999999999864311 01 1233 3467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~ 275 (561)
.||+|+.++|.+.+...-+-++..+.++++++++..+++-.+ ..+.+.+.
T Consensus 193 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 193 EADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp HCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred hCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 899999999976554332223455678889987644443222 34666654
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.17 E-value=7.7e-07 Score=89.34 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=69.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|++||++++..+. + .......++ +.+++
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------~---------~~~~~~~~l~ell~~ 193 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPG-----------------V---------ESYVGREELRAFLNQ 193 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTT-----------------C---------EEEESHHHHHHHHHT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhh-----------------h---------hhhcccCCHHHHHhh
Confidence 68999999999999999999999999999998753211 0 000011233 34689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~ 274 (561)
||+|+.++|-..+...-+-++..+.++++++|+ |+|. +.-..+.+.+
T Consensus 194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL 243 (315)
T 3pp8_A 194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVL-NLARGVHVQEADLLAAL 243 (315)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCchhhhhhccHHHHhhCCCCCEEE-ECCCChhhhHHHHHHHH
Confidence 999999999776655444356667789999875 4443 2334555555
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=5.9e-06 Score=83.12 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=65.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l 224 (561)
+||+|||+|.+|.+++..++..++ +|+++|+++++++.....+.+.. .....+.. ..+++++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~---------------~~~~~~~v~~~~~~a~ 70 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ---------------AFTAPKKIYSGEYSDC 70 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG---------------GGSCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH---------------HhcCCeEEEECCHHHh
Confidence 699999999999999999999887 89999999987764222211110 00112212 2457889
Q ss_pred CCCCEEEEeccC--Ch------------hhHHHHHHHHHhhcCCCceee
Q 008576 225 KDVDMVIEAIIE--NV------------SLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 225 ~~aDlVieav~e--~~------------~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++||+||.+++- ++ .+.+++.+.+.+++ ++++++
T Consensus 71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~ii 118 (318)
T 1ez4_A 71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFL 118 (318)
T ss_dssp TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEE
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999999998732 11 45666777788876 455443
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-05 Score=68.14 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=60.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc--cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~ 225 (561)
++|+|+|+|.||..++..|.+.|++|+++|++++.++...+ ..+... ......-...+ ..+.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----------~~~~~~------~~~d~~~~~~l~~~~~~ 68 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----------EIDALV------INGDCTKIKTLEDAGIE 68 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HCSSEE------EESCTTSHHHHHHTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----------hcCcEE------EEcCCCCHHHHHHcCcc
Confidence 58999999999999999999999999999999987654321 111100 00000000001 1267
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
++|+||.|++.+ .. ...+..+.+.++++.+|+..+
T Consensus 69 ~~d~vi~~~~~~-~~-~~~~~~~~~~~~~~~ii~~~~ 103 (140)
T 1lss_A 69 DADMYIAVTGKE-EV-NLMSSLLAKSYGINKTIARIS 103 (140)
T ss_dssp TCSEEEECCSCH-HH-HHHHHHHHHHTTCCCEEEECS
T ss_pred cCCEEEEeeCCc-hH-HHHHHHHHHHcCCCEEEEEec
Confidence 899999999854 22 223344445566667776433
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=6.2e-06 Score=83.05 Aligned_cols=120 Identities=20% Similarity=0.305 Sum_probs=71.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.+||+|||+|.+|.+++..|+..|+ +|+++|+++++++.....+ .... .- . ..-++.. ++++++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl--------~~~~-~~--~--~~~~i~~-~~~~a~ 72 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGL-PF--M--GQMSLYA-GDYSDV 72 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSC-CC--T--TCEEEC---CGGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH--------HHhH-Hh--c--CCeEEEE-CCHHHh
Confidence 3699999999999999999999998 9999999987665311111 1110 00 0 0012332 467889
Q ss_pred CCCCEEEEeccCCh--------------hhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc----c-Cccceecc
Q 008576 225 KDVDMVIEAIIENV--------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----Y-SKDRIVGA 283 (561)
Q Consensus 225 ~~aDlVieav~e~~--------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~-~~~r~ig~ 283 (561)
++||+||.+++... .+.+++.+.+.+++ ++++++.. +-|+..+...+ . .+.|++|+
T Consensus 73 ~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~ 147 (318)
T 1y6j_A 73 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS 147 (318)
T ss_dssp TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence 99999999985322 23467777888885 55655432 34544333222 2 24566664
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-06 Score=88.98 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=66.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|+.||+++... . .......+++ .++.
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~------------~~~~~~~sl~ell~~ 208 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------Y------------GNVKPAASLDELLKT 208 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------B------------TTBEECSSHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------c------------cCcEecCCHHHHHhh
Confidence 699999999999999999999999999999874210 0 0111223443 4789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~ 275 (561)
||+|+.++|...+.+.-+-++..+.++++++|+..+.+- ....+.+.+.
T Consensus 209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~ 259 (416)
T 3k5p_A 209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ 259 (416)
T ss_dssp CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence 999999999776654433355666789999886433332 3445666654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=81.45 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=65.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 223 (561)
-+||+|||+|.+|.+++..++..++ +|+++|+++++++.....+.+ .. .....+.. ..++++
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~--------~~-------~~~~~~~i~~~~~~a 73 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN--------AL-------PFTSPKKIYSAEYSD 73 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHT--------TG-------GGSCCCEEEECCGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHH--------HH-------HhcCCeEEEECCHHH
Confidence 3699999999999999999998886 899999999877642221111 00 00112222 246788
Q ss_pred cCCCCEEEEeccC--Ch------------hhHHHHHHHHHhhcCCCceee
Q 008576 224 FKDVDMVIEAIIE--NV------------SLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 224 l~~aDlVieav~e--~~------------~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++||+||.++.- ++ .+.+++.+.+.+++ ++++|+
T Consensus 74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~ii 122 (326)
T 2zqz_A 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFL 122 (326)
T ss_dssp GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEE
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence 9999999998742 22 45666777788886 455443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-06 Score=90.19 Aligned_cols=99 Identities=22% Similarity=0.208 Sum_probs=69.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||+++... .+ .+....+++ .++.
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 197 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------LG------------NATQVQHLSDLLNM 197 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------CT------------TCEECSCHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------cC------------CceecCCHHHHHhc
Confidence 589999999999999999999999999999865310 01 111223443 4688
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~ 275 (561)
||+|+.++|...+.+.-+-++..+.++++++++ |+|... ...+.+.+.
T Consensus 198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-N~aRg~~vd~~aL~~aL~ 248 (404)
T 1sc6_A 198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI-NASRGTVVDIPALADALA 248 (404)
T ss_dssp CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-ECSCSSSBCHHHHHHHHH
T ss_pred CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEE-ECCCChHHhHHHHHHHHH
Confidence 999999999877655433355666789999876 444432 335555553
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=80.21 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=65.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.+++..++..+ .+|+++|+++++++.....+.+.. .... .-++.. +++++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~------~~~~-------~~~v~~-~~~~a~~ 66 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT------PFAH-------PVWVWA-GSYGDLE 66 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG------GGSC-------CCEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH------hhcC-------CeEEEE-CCHHHhC
Confidence 48999999999999999999987 589999999887764221111100 0000 012332 4678899
Q ss_pred CCCEEEEeccC--C------------hhhHHHHHHHHHhhcCCCceee
Q 008576 226 DVDMVIEAIIE--N------------VSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e--~------------~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+||+||.++.- + ..+.+++.+.+.++++ +++++
T Consensus 67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~ii 113 (310)
T 2xxj_A 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAP-EAVLL 113 (310)
T ss_dssp TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCC-CcEEE
Confidence 99999998732 2 3456677777888865 45443
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.5e-06 Score=84.74 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=62.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.||..++..|+.. |+ +|++||++++++++..+. .+. .+...+++ +.
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~----------~~~-----------~~~~~~~~~e~ 193 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT----------VQG-----------EVRVCSSVQEA 193 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHH----------SSS-----------CCEECSSHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------hhC-----------CeEEeCCHHHH
Confidence 35899999999999999999876 76 899999999887653321 010 13334455 44
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
+++||+||.|+|... .++.. +.++++++|++.
T Consensus 194 v~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~ 225 (312)
T 2i99_A 194 VAGADVIITVTLATE----PILFG--EWVKPGAHINAV 225 (312)
T ss_dssp HTTCSEEEECCCCSS----CCBCG--GGSCTTCEEEEC
T ss_pred HhcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeC
Confidence 789999999998532 22222 467788877654
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-06 Score=88.89 Aligned_cols=101 Identities=17% Similarity=0.100 Sum_probs=70.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||.++|+.+...|++|+.||+++...+. ..+ .....+++ .+++
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-------------~~g-------------~~~~~~l~ell~~ 227 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHAL-------------EEG-------------AIYHDTLDSLLGA 227 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHH-------------HTT-------------CEECSSHHHHHHT
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhh-------------hcC-------------CeEeCCHHHHHhh
Confidence 69999999999999999999999999999998633221 001 11223443 4789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~ 275 (561)
||+|+.++|-+.+...-+-++..+.++++++|+ |+|.- .-..+.+.+.
T Consensus 228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~ 278 (345)
T 4g2n_A 228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVI-NISRGDLINDDALIEALR 278 (345)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEE-ECCCCchhCHHHHHHHHH
Confidence 999999999776655444456667789999876 45432 3345555553
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=9.4e-07 Score=89.39 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=70.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
=++|+|||.|.||.++|+.+...|++|+.||+++...+... ..| +.. .++ +.++
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~-~~l~ell~ 199 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQ-----------RLG-------------LRQ-VACSELFA 199 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHH-----------HHT-------------EEE-CCHHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHH-----------hcC-------------cee-CCHHHHHh
Confidence 36999999999999999999999999999999863322211 111 111 133 3467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC--CCHHHHHhhc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT 274 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 274 (561)
.||+|+.++|-..+...-+-++..+.++++++|+..+.+ +.-..+.+.+
T Consensus 200 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL 250 (330)
T 4e5n_A 200 SSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL 250 (330)
T ss_dssp HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred hCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence 899999999976665544445677778999988643333 2334555555
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-06 Score=86.90 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=69.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||.|.||..+|+.+...|++|++||++++... . + . +....++ +.++
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~-----------~-~-------------~~~~~~l~ell~ 198 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL--E-----------K-K-------------GYYVDSLDDLYK 198 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--H-----------H-T-------------TCBCSCHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhH--H-----------h-h-------------CeecCCHHHHHh
Confidence 36899999999999999999999999999999875421 0 0 0 0112233 3367
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC--CCHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 275 (561)
+||+|+.++|...+.+.-+-++..+.++++++++..+++ +.-..+.+.+.
T Consensus 199 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 250 (333)
T 1j4a_A 199 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250 (333)
T ss_dssp HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 899999999977654432224455667889877644433 23345655553
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.4e-06 Score=87.64 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=70.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
++|+|||.|.||..+|+.+...|++ |++||++....+.+. +.| +....+++ .++
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~ 220 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA 220 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence 6899999999999999999999998 999998864433211 112 11122343 467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC--CCHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 275 (561)
+||+|+.++|...+...-+-++..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALE 272 (364)
T ss_dssp TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 999999999976654443334566678889877644333 23345655553
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-06 Score=88.73 Aligned_cols=98 Identities=21% Similarity=0.109 Sum_probs=69.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|+.||++++... +.+ .... ++ +.+++
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--------------~~~-------------~~~~-~l~ell~~ 200 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEF--------------EPF-------------LTYT-DFDTVLKE 200 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGG--------------TTT-------------CEEC-CHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhh--------------hcc-------------cccc-CHHHHHhc
Confidence 6999999999999999999999999999999864310 000 1111 34 34688
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~ 274 (561)
||+|+.++|-..+...-+-++..+.++++++|+ |+|.- .-..+.+.+
T Consensus 201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vd~~aL~~aL 250 (343)
T 2yq5_A 201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLI-NCARGELVDTGALIKAL 250 (343)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEE-ECCCChhhhHHHHHHHH
Confidence 999999999766654444455666789999876 44432 334555555
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.5e-06 Score=73.17 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=51.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||..++..|...|++|+++|+++++++...+.+ + ..+...+++ +.+.+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~ 80 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN 80 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence 5899999999999999999999999999999998876532211 1 011122333 34678
Q ss_pred CCEEEEeccCC
Q 008576 227 VDMVIEAIIEN 237 (561)
Q Consensus 227 aDlVieav~e~ 237 (561)
+|+||.|+|..
T Consensus 81 ~Divi~at~~~ 91 (144)
T 3oj0_A 81 NDVIITATSSK 91 (144)
T ss_dssp CSEEEECSCCS
T ss_pred CCEEEEeCCCC
Confidence 99999999854
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.94 E-value=6e-05 Score=66.05 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=59.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cc---cc-
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE- 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~- 222 (561)
.+|.|+|+|.+|..+|..|...|++|+++|++++.++.+. +.|.. .+... ++ ++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~-----------~~g~~----------~i~gd~~~~~~l~~ 66 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELR-----------ERGVR----------AVLGNAANEEIMQL 66 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-----------HTTCE----------EEESCTTSHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-----------HcCCC----------EEECCCCCHHHHHh
Confidence 5899999999999999999999999999999999877643 12210 00000 01 11
Q ss_pred -ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
.+.++|+||.+++++.... .+...+....+.-.||+-
T Consensus 67 a~i~~ad~vi~~~~~~~~n~-~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 67 AHLECAKWLILTIPNGYEAG-EIVASARAKNPDIEIIAR 104 (140)
T ss_dssp TTGGGCSEEEECCSCHHHHH-HHHHHHHHHCSSSEEEEE
T ss_pred cCcccCCEEEEECCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 2578999999999764432 233334443333345553
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-05 Score=77.98 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=62.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||.+++..|.+.|++|+++|+++++++...+. .+ +...+++ +.+.+
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~ 186 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----------FP-------------LEVVNSPEEVIDK 186 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----------SC-------------EEECSCGGGTGGG
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----------cC-------------CeeehhHHhhhcC
Confidence 589999999999999999999999999999999876542110 01 1222244 45789
Q ss_pred CCEEEEeccCChhhH-HHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLK-QQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k-~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+|+||.|+|....-. ...+. .+.+++++++++...
T Consensus 187 aDiVi~atp~~~~~~~~~~i~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 187 VQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp CSEEEECSSTTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred CCEEEEeCCCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence 999999998654110 00111 245677887776554
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.6e-06 Score=87.17 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=71.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|++||++.+... .+ . ...++ +.+++
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------------~~-------------~-~~~sl~ell~~ 170 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG---------------DE-------------G-DFRTLDELVQE 170 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT---------------CC-------------S-CBCCHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc---------------cC-------------c-ccCCHHHHHhh
Confidence 6899999999999999999999999999997443210 00 0 12234 34678
Q ss_pred CCEEEEeccCChh----hHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhccC-ccceeccccc
Q 008576 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYS-KDRIVGAHFF 286 (561)
Q Consensus 227 aDlVieav~e~~~----~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~~-~~r~ig~h~~ 286 (561)
||+|+.++|-..+ ...-+-++..+.++++++++ |+|.-. -..+.+.+.. .-.-.++--|
T Consensus 171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vvde~aL~~aL~~g~i~gA~LDV~ 237 (381)
T 3oet_A 171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILI-NACRGPVVDNAALLARLNAGQPLSVVLDVW 237 (381)
T ss_dssp CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTCCEEEEESCC
T ss_pred CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHhCCCeEEEeecc
Confidence 9999999996655 43333345566688999875 555432 3456555532 2233344444
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.85 E-value=6.9e-05 Score=68.80 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=35.4
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~ 185 (561)
++|+|+|+|.||..+|..|.+. |++|+++|++++.++.
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~ 78 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ 78 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHH
Confidence 5899999999999999999999 9999999999988765
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=61.51 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=36.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~ 185 (561)
+++|+|+|+|.||..++..|...| ++|+++|++++.++.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~ 44 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAV 44 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence 579999999999999999999999 999999999987665
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.84 E-value=8.9e-05 Score=74.03 Aligned_cols=119 Identities=15% Similarity=0.269 Sum_probs=71.4
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILG-GGLMGSGIATALILSNY--PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+||+|+| +|.+|.+++..|+..|+ +++++|+ ++++++.....+.+.. ..+ . .-.+.. ++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~----~~~--~-------~~~v~~-~~~~ 66 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI----AYD--S-------NTRVRQ-GGYE 66 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH----TTT--C-------CCEEEE-CCGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHH----hhC--C-------CcEEEe-CCHH
Confidence 4899999 99999999999998886 7999999 8776543111111110 000 0 012222 3567
Q ss_pred ccCCCCEEEEecc--CCh------------hhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc----c-Cccceecc
Q 008576 223 SFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----Y-SKDRIVGA 283 (561)
Q Consensus 223 ~l~~aDlVieav~--e~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~-~~~r~ig~ 283 (561)
++++||+||.+.. ..+ .+.+++.+.+.++.+ +.+|.. ++-|+..+...+ . .+.|++|+
T Consensus 67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv--~SNPv~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLT--TSNPVDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEE--CCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE--eCChHHHHHHHHHHHcCCCHHHeeec
Confidence 8999999999873 211 356667777777754 554433 234444332221 2 24577765
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.7e-06 Score=86.23 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=66.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|..+...|++|++||++.+.. ..+. . ..++ +.+++
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g~-------------~-~~~l~ell~~ 167 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPDG-------------E-FVSLERLLAE 167 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STTS-------------C-CCCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccCc-------------c-cCCHHHHHHh
Confidence 589999999999999999999999999999765321 0110 0 1233 33678
Q ss_pred CCEEEEeccCChh----hHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhcc
Q 008576 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~----~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~ 275 (561)
||+|+.++|-..+ ...-+-+++.+.++++++++ |+|.-. -..+.+.+.
T Consensus 168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~sRG~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLV-NASRGAVVDNQALRRLLE 222 (380)
T ss_dssp CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEE-ECCCCcccCHHHHHHHHH
Confidence 9999999987655 33322245666788998775 444432 345655553
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.3e-06 Score=85.51 Aligned_cols=101 Identities=13% Similarity=0.032 Sum_probs=69.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
=++|+|||.|.||..+|+.+...|++|++||++.+.. .. ..+.. .++ +.++
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-------------------~~--------~~~~~-~~l~ell~ 196 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG-------------------DH--------PDFDY-VSLEDLFK 196 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-------------------CC--------TTCEE-CCHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh-------------------hH--------hcccc-CCHHHHHh
Confidence 3689999999999999999999999999999876421 00 00111 133 3467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~ 275 (561)
.||+|+.++|...+.+.-+-++..+.++++++++..+++- .-..+.+.+.
T Consensus 197 ~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 248 (333)
T 1dxy_A 197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248 (333)
T ss_dssp HCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred cCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 8999999999776654433345566788899776433332 3345666554
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2e-05 Score=68.84 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=35.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
+++|.|+|+|.+|..++..|...|++|+++|++++.++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~ 44 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNA 44 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 468999999999999999999999999999999877553
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.1e-05 Score=70.34 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=35.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|+|+|.+|..++..|...|++|+++|++++.++.
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~ 57 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR 57 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 58999999999999999999999999999999887653
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0001 Score=76.76 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=70.3
Q ss_pred ceEEEEEcCccc-hHHHHHHHHh--C---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 147 VKKVAILGGGLM-GSGIATALIL--S---NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~m-G~~iA~~la~--~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
.+||+|||+|.. +.++...|+. . +.+|+++|+++++++.+. .+...+ ... . .++..++|
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~-~~~~~~---~~~----------~-~~v~~t~d 66 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVKRL---VKD----------R-FKVLISDT 66 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHHHH---HTT----------S-SEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHH-HHHHHH---hhC----------C-eEEEEeCC
Confidence 469999999884 2222233454 3 558999999999877532 211111 110 0 24666678
Q ss_pred c-cccCCCCEEEEeccC--------------Ch--------------------hhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 221 Y-ESFKDVDMVIEAIIE--------------NV--------------------SLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 221 ~-~~l~~aDlVieav~e--------------~~--------------------~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
+ +++++||+||+++-. +. .+..++.+++.+++ +++++.-|...
T Consensus 67 ~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPv 144 (417)
T 1up7_A 67 FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPS 144 (417)
T ss_dssp HHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSH
T ss_pred HHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChH
Confidence 6 779999999999811 11 24677888899988 66554333222
Q ss_pred C-HHHHHhhccCccceecc
Q 008576 266 D-LNLIGERTYSKDRIVGA 283 (561)
Q Consensus 266 ~-~~~l~~~~~~~~r~ig~ 283 (561)
. +++.........|++|+
T Consensus 145 di~t~a~~k~~p~~rviG~ 163 (417)
T 1up7_A 145 GHITEFVRNYLEYEKFIGL 163 (417)
T ss_dssp HHHHHHHHHTTCCSSEEEC
T ss_pred HHHHHHHHHhCCCCCEEEe
Confidence 2 23333222323366664
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=8e-05 Score=72.75 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=49.3
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
+|+|||+|.||.+++..|...|++|+++|++.++++...+. .+. . .++++++.++|
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~----------~~~-------------~-~~~~~~~~~~D 173 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEE----------FGL-------------R-AVPLEKAREAR 173 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------HTC-------------E-ECCGGGGGGCS
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcc-------------c-hhhHhhccCCC
Confidence 89999999999999999999999999999999876543211 010 0 12332237899
Q ss_pred EEEEeccCC
Q 008576 229 MVIEAIIEN 237 (561)
Q Consensus 229 lVieav~e~ 237 (561)
+||.|+|..
T Consensus 174 ivi~~tp~~ 182 (263)
T 2d5c_A 174 LLVNATRVG 182 (263)
T ss_dssp EEEECSSTT
T ss_pred EEEEccCCC
Confidence 999999865
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=7.7e-05 Score=65.28 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=58.5
Q ss_pred ceEEEEEcC----ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 147 VKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
-++|+|||+ |.||..++..|.+.|++|+.+|++.+.+ ..+....+++
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~ 64 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR 64 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence 468999999 9999999999999999866666543211 1122334454
Q ss_pred cc-CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 223 SF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 223 ~l-~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
++ ..+|++|.++| .+...+++.++.+ ...+.++. .+++.
T Consensus 65 el~~~vDlvii~vp--~~~v~~v~~~~~~-~g~~~i~~-~~~~~ 104 (138)
T 1y81_A 65 ELPKDVDVIVFVVP--PKVGLQVAKEAVE-AGFKKLWF-QPGAE 104 (138)
T ss_dssp GSCTTCCEEEECSC--HHHHHHHHHHHHH-TTCCEEEE-CTTSC
T ss_pred HhCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEE-cCccH
Confidence 43 57999999999 4566677777655 34455554 34444
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.9e-06 Score=84.25 Aligned_cols=100 Identities=19% Similarity=0.065 Sum_probs=67.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||.|.||..+|+.+...|++|++||++.+... +. .+.. .++ +.++
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--------------~~-------------~~~~-~~l~ell~ 197 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGI--------------ED-------------YCTQ-VSLDEVLE 197 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSC--------------TT-------------TCEE-CCHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHH--------------Hh-------------cccc-CCHHHHHh
Confidence 36899999999999999999999999999998764210 00 0111 133 3467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~ 275 (561)
+||+|+.++|...+.+.-+-++..+.++++++++ |+|.- .-..+.+.+.
T Consensus 198 ~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~li-n~srg~~vd~~aL~~aL~ 249 (331)
T 1xdw_A 198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILV-NCARGQLVDTEAVIEAVE 249 (331)
T ss_dssp HCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred hCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEE-ECCCcccccHHHHHHHHH
Confidence 8999999999765543323244556688898775 44442 3345655553
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=72.57 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=62.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---cccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLDY 221 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 221 (561)
+||+|||+ |.+|.+++..|+..| .+|+++|+++ .+.... ...... . ..++.. ++++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~--------dL~~~~-~-------~~~l~~~~~t~d~ 62 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAA--------DLSHIE-T-------RATVKGYLGPEQL 62 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHH--------HHTTSS-S-------SCEEEEEESGGGH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHH--------HHhccC-c-------CceEEEecCCCCH
Confidence 48999998 999999999999988 6899999997 111000 111111 0 013443 3567
Q ss_pred c-ccCCCCEEEEecc--CCh------------hhHHHHHHHHHhhcCCCcee
Q 008576 222 E-SFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 222 ~-~l~~aDlVieav~--e~~------------~~k~~v~~~l~~~~~~~~ii 258 (561)
+ ++++||+||.++. ... .+.+++.+.+.+++++..+|
T Consensus 63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi 114 (314)
T 1mld_A 63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 114 (314)
T ss_dssp HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 5 5999999999872 211 56777778888887443333
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00014 Score=72.29 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=58.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||..+|+.+...|.+|+++|++++..+.+. +.|. ..+. ..++ +.+++
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~ 213 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD 213 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence 5899999999999999999999999999999987654321 1121 0000 1223 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+|+||.++|...-.. + ..+.++++.+++.
T Consensus 214 aDvVi~~~p~~~i~~-~----~l~~mk~~~~lin 242 (293)
T 3d4o_A 214 VDVCINTIPALVVTA-N----VLAEMPSHTFVID 242 (293)
T ss_dssp CSEEEECCSSCCBCH-H----HHHHSCTTCEEEE
T ss_pred CCEEEECCChHHhCH-H----HHHhcCCCCEEEE
Confidence 999999998643221 2 2334677776653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00035 Score=65.99 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=35.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
+||.|+|+|.+|..+|..|...|++|+++|++++.++.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~ 38 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEE 38 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 47999999999999999999999999999999998765
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.64 E-value=7e-05 Score=74.71 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=58.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||..+|+.+...|++|+++|+++++.+... +.|. ..+. ..++ +.+++
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~ 215 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD 215 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence 5899999999999999999999999999999987654321 1121 0000 1233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
||+||.++|...-. ++..+.++++++++.
T Consensus 216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin 244 (300)
T 2rir_A 216 IDICINTIPSMILN-----QTVLSSMTPKTLILD 244 (300)
T ss_dssp CSEEEECCSSCCBC-----HHHHTTSCTTCEEEE
T ss_pred CCEEEECCChhhhC-----HHHHHhCCCCCEEEE
Confidence 99999999964321 122345677776653
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=74.04 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=64.8
Q ss_pred ceEEEEEc-CccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---ccc
Q 008576 147 VKKVAILG-GGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLD 220 (561)
Q Consensus 147 ~~kV~VIG-~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 220 (561)
.+||+|+| +|.+|.+++..|+..| ++|+++|++++. ..+. + + ..... ...+.. +++
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~~-------d-L-~~~~~--------~~~v~~~~~t~d 69 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVTA-------D-I-SHMDT--------GAVVRGFLGQQQ 69 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHHH-------H-H-HTSCS--------SCEEEEEESHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHHH-------H-h-hcccc--------cceEEEEeCCCC
Confidence 46999999 7999999999999998 799999998761 1111 0 0 11100 012322 345
Q ss_pred c-cccCCCCEEEEecc--CCh------------hhHHHHHHHHHhhcCCCceeeecCCCCCHHH
Q 008576 221 Y-ESFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (561)
Q Consensus 221 ~-~~l~~aDlVieav~--e~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~ 269 (561)
+ +++++||+||.++. ... .+.+.+.+.+.+..+ +.+|.. +|-|+..
T Consensus 70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv--~SNPv~~ 130 (326)
T 1smk_A 70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNL--ISNPVNS 130 (326)
T ss_dssp HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEE--CCSSHHH
T ss_pred HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE--ECCchHH
Confidence 5 45899999999973 211 456677777777764 554433 2345444
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.63 E-value=8e-05 Score=65.80 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=64.5
Q ss_pred eEEEEEcC----ccchHHHHHHHHhCCCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
++|+|||+ |.||..++..|.+.|++|+.+|++. +.+ ..+....++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl 64 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL 64 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence 57999999 8999999999999999977777654 211 112233445
Q ss_pred ccc-CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc-cCccceec
Q 008576 222 ESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVG 282 (561)
Q Consensus 222 ~~l-~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig 282 (561)
+++ ..+|++|.++|. +...+++.++.+ .....+++. +++. -.++.+.+ ...-+++|
T Consensus 65 ~el~~~~Dlvii~vp~--~~v~~v~~~~~~-~g~~~i~i~-~~~~-~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 65 ADVPEKVDMVDVFRNS--EAAWGVAQEAIA-IGAKTLWLQ-LGVI-NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp TTCSSCCSEEECCSCS--THHHHHHHHHHH-HTCCEEECC-TTCC-CHHHHHHHHTTTCEEEC
T ss_pred HHcCCCCCEEEEEeCH--HHHHHHHHHHHH-cCCCEEEEc-CChH-HHHHHHHHHHcCCEEEc
Confidence 443 578999999994 455667776655 344555543 4444 34444433 23345554
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.3e-05 Score=77.82 Aligned_cols=91 Identities=9% Similarity=0.042 Sum_probs=59.1
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+|+|||+|.||.+++..|+..|. +|+++||+++++++..+ . ++... ..++ +.+.+
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~-----------~-----------~~~~~-~~~~~~~~~~ 166 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDF-----------P-----------VKIFS-LDQLDEVVKK 166 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS-----------S-----------CEEEE-GGGHHHHHHT
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-----------H-----------cccCC-HHHHHhhhcC
Confidence 89999999999999999999998 99999999987654110 0 00011 1222 34678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+|+||.|+|..+.-....+. ...++++.++.+....
T Consensus 167 aDiVInatp~gm~p~~~~i~--~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 167 AKSLFNTTSVGMKGEELPVS--DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp CSEEEECSSTTTTSCCCSCC--HHHHTTCSEEEECSSS
T ss_pred CCEEEECCCCCCCCCCCCCC--HHHhCcCCEEEEeeCC
Confidence 99999999743210000010 1234677877766555
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=73.11 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=64.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVN----EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~----~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (561)
+||+|+|+ |.+|.+++..|+..|+ +|+++|++ +++++..... ....... ....+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~d--------l~~~~~~------~~~~i 71 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMME--------IDDCAFP------LLAGM 71 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHH--------HHTTTCT------TEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHH--------Hhhhccc------ccCcE
Confidence 59999998 9999999999999886 89999999 5544321111 1111110 11344
Q ss_pred cccccc-cccCCCCEEEEecc--C------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 216 TGVLDY-ESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 216 ~~~~~~-~~l~~aDlVieav~--e------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
..++++ +++++||+||.+.. . +..+.+++.+.+.+++.++++|+
T Consensus 72 ~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii 130 (329)
T 1b8p_A 72 TAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVL 130 (329)
T ss_dssp EEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred EEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 445554 66999999998762 1 22356677778888874565443
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0001 Score=73.65 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=61.1
Q ss_pred eEEEEEc-CccchHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---ccc
Q 008576 148 KKVAILG-GGLMGSGIATALILS-N--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLD 220 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 220 (561)
+||+||| +|.+|.+++..|+.. + .+++++|+++ .++. . .++. ..... ...+.. +.+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G-~-----a~Dl--~~~~~--------~~~v~~~~~~~~ 63 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPG-V-----AVDL--SHIPT--------AVKIKGFSGEDA 63 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHH-H-----HHHH--HTSCS--------SEEEEEECSSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-Cchh-H-----HHHh--hCCCC--------CceEEEecCCCc
Confidence 4899999 899999999999875 5 4899999987 3321 1 1111 11100 012322 246
Q ss_pred ccccCCCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ~~~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.+... +..+.+++.+.+.++++ +++++
T Consensus 64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vl 115 (312)
T 3hhp_A 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIG 115 (312)
T ss_dssp HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEE
T ss_pred HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEE
Confidence 7889999999998621 23456667777888865 55443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00015 Score=70.28 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=53.8
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
|++|| |++.+|.+||..|++.|.+|++.|++++.+++..+.+.+.-. ..+..+.-+++++++..+.+. +.+
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~~ 84 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLD-----AEG 84 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH-----HTT
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH-----HHC
Confidence 77777 558899999999999999999999999988876654432100 001122334444444433322 346
Q ss_pred CCCCEEEEec
Q 008576 225 KDVDMVIEAI 234 (561)
Q Consensus 225 ~~aDlVieav 234 (561)
...|++|.+.
T Consensus 85 G~iDiLVNNA 94 (255)
T 4g81_D 85 IHVDILINNA 94 (255)
T ss_dssp CCCCEEEECC
T ss_pred CCCcEEEECC
Confidence 7789999875
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0004 Score=69.62 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=61.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc--
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-- 220 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-- 220 (561)
+||+|+|+ |.+|..++..|+..|+ ++.++|+ ++++++.....+.+ .. ..... .-.+..+++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~----~~--~~~~~------~~~i~~~~d~l 68 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD----AL--AGTRS------DANIYVESDEN 68 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHH----HH--TTSCC------CCEEEEEETTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHH----hH--HhcCC------CeEEEeCCcch
Confidence 48999999 9999999999998885 6999999 77654432211111 00 00000 012332333
Q ss_pred ccccCCCCEEEEec--cC------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 221 YESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ~~~l~~aDlVieav--~e------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.+. |. +..+.+++.+.+.+++ +++|.
T Consensus 69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vl 119 (313)
T 1hye_A 69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIF 119 (313)
T ss_dssp GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEE
T ss_pred HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEE
Confidence 57799999999886 21 2335667777787777 55443
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00032 Score=74.25 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=47.9
Q ss_pred eEEEEEcCccchHH--HHHHHHh----C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 148 KKVAILGGGLMGSG--IATALIL----S--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~mG~~--iA~~la~----~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
+||+|||+|..|.. +...++. . +.+|+++|+++++++.....+++.... .+ .--++..++
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~---~~---------~~~~i~~t~ 68 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEE---LN---------SPVKVVKTE 68 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHH---HT---------CCCEEEEES
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHH---cC---------CCeEEEEeC
Confidence 48999999997754 2222332 2 347999999999877543322222211 11 012466778
Q ss_pred cc-cccCCCCEEEEec
Q 008576 220 DY-ESFKDVDMVIEAI 234 (561)
Q Consensus 220 ~~-~~l~~aDlVieav 234 (561)
|+ +++++||+||.++
T Consensus 69 d~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 69 SLDEAIEGADFIINTA 84 (477)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEECc
Confidence 87 5589999999886
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0005 Score=66.04 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=54.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.|.||+|+|+|.||..++..+...+++++ ++|++.+. .. .+..+++++++
T Consensus 2 ~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~~-------------gv~v~~dl~~l 52 (243)
T 3qy9_A 2 ASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------TT-------------PYQQYQHIADV 52 (243)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------------------C-------------CSCBCSCTTTC
T ss_pred CceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------cC-------------CCceeCCHHHH
Confidence 46799999999999999999998877655 47877641 01 23345566554
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
.++|+||++.. ++ .+...+. +..+.-+++.|++++.
T Consensus 53 ~~~DVvIDft~--p~---a~~~~~~--l~~g~~vVigTTG~s~ 88 (243)
T 3qy9_A 53 KGADVAIDFSN--PN---LLFPLLD--EDFHLPLVVATTGEKE 88 (243)
T ss_dssp TTCSEEEECSC--HH---HHHHHHT--SCCCCCEEECCCSSHH
T ss_pred hCCCEEEEeCC--hH---HHHHHHH--HhcCCceEeCCCCCCH
Confidence 49999998764 22 2222232 4555544445555543
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00019 Score=69.94 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=50.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|.|||+|.||.+++..|+..|.+|++++|+.+++++.. . .+ +. ..+++++.++
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~----------~~-------------~~-~~~~~~l~~~ 173 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-R----------LG-------------CD-CFMEPPKSAF 173 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-H----------HT-------------CE-EESSCCSSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H----------CC-------------Ce-EecHHHhccC
Confidence 5899999999999999999999999999999988766522 1 01 11 1133445589
Q ss_pred CEEEEeccCC
Q 008576 228 DMVIEAIIEN 237 (561)
Q Consensus 228 DlVieav~e~ 237 (561)
|+||.|+|..
T Consensus 174 DiVInaTp~G 183 (269)
T 3phh_A 174 DLIINATSAS 183 (269)
T ss_dssp SEEEECCTTC
T ss_pred CEEEEcccCC
Confidence 9999999854
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00017 Score=76.22 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=60.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|+.+...|.+|+++|+++.....+. ..|. .. .++ +.+++
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G~-------------~~-~~l~ell~~ 332 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEGY-------------RV-VTMEYAADK 332 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTTC-------------EE-CCHHHHTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcCC-------------Ee-CCHHHHHhc
Confidence 5899999999999999999999999999999987642211 1121 11 233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||.++. ...+ +-++..+.++++++|+...+
T Consensus 333 aDiVi~~~~-t~~l---I~~~~l~~MK~gAilINvgr 365 (494)
T 3d64_A 333 ADIFVTATG-NYHV---INHDHMKAMRHNAIVCNIGH 365 (494)
T ss_dssp CSEEEECSS-SSCS---BCHHHHHHCCTTEEEEECSS
T ss_pred CCEEEECCC-cccc---cCHHHHhhCCCCcEEEEcCC
Confidence 999999983 2221 11234456788998864433
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00037 Score=70.88 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=59.6
Q ss_pred ceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.||..++..+.. ...+|++||++++++++..+.+.. ..|. .+...+++ +.
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g~-----------~~~~~~~~~ea 191 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSGL-----------TIRRASSVAEA 191 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTTC-----------EEEECSSHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccCc-----------eEEEeCCHHHH
Confidence 3589999999999999988754 356899999999987764432100 0010 12233444 44
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+.+||+||.|+|.... ..++. ...+++++.|...+
T Consensus 192 v~~aDiVi~aTps~~~--~pvl~--~~~l~~G~~V~~vg 226 (350)
T 1x7d_A 192 VKGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVG 226 (350)
T ss_dssp HTTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECS
T ss_pred HhcCCEEEEeccCCCC--Cceec--HHHcCCCCEEEECC
Confidence 7899999999986410 01111 13456777665433
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0006 Score=60.46 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=33.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC-HHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~ 185 (561)
++|.|+|+|.+|..++..|...|++|+++|++ ++.++.
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~ 42 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ 42 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence 58999999999999999999999999999998 555443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=76.60 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=63.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||.++|+.+...|.+|+++|+++....++. ..|. . ..++ +.+++
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g~-------------~-~~~l~ell~~ 312 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEGF-------------N-VVTLDEIVDK 312 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTTC-------------E-ECCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcCC-------------E-ecCHHHHHhc
Confidence 5899999999999999999999999999999987643221 1121 1 1233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHh
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE 272 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~ 272 (561)
||+||.++. ...+ +-++..+.++++++|+...++ +....+.+
T Consensus 313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 999999963 2222 112344567889988644333 23345554
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.33 E-value=9.5e-05 Score=74.70 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=70.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||.|.+|..+|..+..-|.+|..||+....... +.+ .. ..++ +.++
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~~-------------~~-~~~l~ell~ 193 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EKG-------------CV-YTSLDELLK 193 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------CE-ECCHHHHHH
T ss_pred CcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hcC-------------ce-ecCHHHHHh
Confidence 368999999999999999999999999999986532111 111 11 1233 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~ 275 (561)
.||+|+.++|-..+.+.-+=++..+.++++++++ |+|.- .-..+.+.+.
T Consensus 194 ~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~ 245 (334)
T 3kb6_A 194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ 245 (334)
T ss_dssp HCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred hCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence 9999999999777654434455556788898775 67643 3345666553
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=67.28 Aligned_cols=96 Identities=11% Similarity=0.212 Sum_probs=61.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
+.||+|||+|.||..++..|.+. +++|+ ++|+++++++...+ . .+ ....+++++
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-----------~-----------~g-~~~~~~~~~~ 60 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE-----------A-----------NG-AEAVASPDEV 60 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH-----------T-----------TT-CEEESSHHHH
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-----------H-----------cC-CceeCCHHHH
Confidence 46999999999999999999886 77766 89999988665321 1 11 223455543
Q ss_pred cC--CCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHH
Q 008576 224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI 270 (561)
Q Consensus 224 l~--~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 270 (561)
+. ++|+|++|+|..... ++.....+ .+. +++-...+..+.+.
T Consensus 61 l~~~~~D~V~i~tp~~~h~--~~~~~al~---~gk~v~~EKP~~~~~~~~ 105 (344)
T 3euw_A 61 FARDDIDGIVIGSPTSTHV--DLITRAVE---RGIPALCEKPIDLDIEMV 105 (344)
T ss_dssp TTCSCCCEEEECSCGGGHH--HHHHHHHH---TTCCEEECSCSCSCHHHH
T ss_pred hcCCCCCEEEEeCCchhhH--HHHHHHHH---cCCcEEEECCCCCCHHHH
Confidence 44 799999999965443 33333222 222 55544445555543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00047 Score=73.00 Aligned_cols=84 Identities=26% Similarity=0.258 Sum_probs=60.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||..+|+.+...|.+|+++|+++++++.+. +.|. + . .++ +.+++
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~-----------~~Ga-~------------~-~~l~e~l~~ 329 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAM-----------MEGF-D------------V-VTVEEAIGD 329 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-E------------E-CCHHHHGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-E------------E-ecHHHHHhC
Confidence 5899999999999999999999999999999998765533 2231 0 0 112 23678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+|+||+|++...-+.. +..+.++++.+|+.
T Consensus 330 aDvVi~atgt~~~i~~----~~l~~mk~ggilvn 359 (494)
T 3ce6_A 330 ADIVVTATGNKDIIML----EHIKAMKDHAILGN 359 (494)
T ss_dssp CSEEEECSSSSCSBCH----HHHHHSCTTCEEEE
T ss_pred CCEEEECCCCHHHHHH----HHHHhcCCCcEEEE
Confidence 9999999875432322 33445688887754
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=73.91 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=36.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.||+|||+|.||..+|+.+...|.+|+++|+++++++.+.
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~ 224 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVR 224 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999999999999999999998877643
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=74.82 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=36.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.||+|||+|.||..+++.+...|.+|+++|+++++++.+.
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~ 230 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVA 230 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 5999999999999999999999999999999998876643
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00024 Score=70.65 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (561)
++|+|||+|.||.+++..|+..|+ +|+++||+.++++..
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l 181 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL 181 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 589999999999999999999998 999999999887653
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.001 Score=66.40 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=61.1
Q ss_pred cceEEEEEcCccchHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+..||+|||+|.||.. ++..+.+. +++|+ ++|+++++++...+. .| +...++++
T Consensus 5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~~-------------~~~~~~~~ 61 (308)
T 3uuw_A 5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD----------YR-------------IMPFDSIE 61 (308)
T ss_dssp CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH----------HT-------------CCBCSCHH
T ss_pred ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC-------------CCCcCCHH
Confidence 4569999999999997 88888774 67776 899999887653321 11 11134443
Q ss_pred c-cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHH
Q 008576 223 S-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI 270 (561)
Q Consensus 223 ~-l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 270 (561)
+ +.++|+|+.|+|..... ++..+.. ..+. +++--..+..+.+.
T Consensus 62 ~ll~~~D~V~i~tp~~~h~--~~~~~al---~~gk~vl~EKP~~~~~~~~ 106 (308)
T 3uuw_A 62 SLAKKCDCIFLHSSTETHY--EIIKILL---NLGVHVYVDKPLASTVSQG 106 (308)
T ss_dssp HHHTTCSEEEECCCGGGHH--HHHHHHH---HTTCEEEECSSSSSSHHHH
T ss_pred HHHhcCCEEEEeCCcHhHH--HHHHHHH---HCCCcEEEcCCCCCCHHHH
Confidence 3 56899999999965442 3333322 2233 55443445555543
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00077 Score=68.11 Aligned_cols=99 Identities=13% Similarity=0.194 Sum_probs=63.8
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (561)
--||+|+|+ |.+|.+++..|+.... ++.++|+++.. ++... ++ ....... ....+.
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva------~D--L~~~~~~------~~~~~~ 89 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVE------AE--LEDCAFP------LLDKVV 89 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH------HH--HHHTTCT------TEEEEE
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhh------hh--hhhcCcc------CCCcEE
Confidence 359999997 9999999999988753 79999997642 22100 11 0111110 112233
Q ss_pred ccc-cccccCCCCEEEEec--cC------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 217 GVL-DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 217 ~~~-~~~~l~~aDlVieav--~e------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
.++ +++++++||+||.+. |- |..+.+++.+.|.++++++++|+
T Consensus 90 ~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vl 147 (345)
T 4h7p_A 90 VTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVV 147 (345)
T ss_dssp EESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred EcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEE
Confidence 333 346799999999875 22 34467777778888888888554
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00037 Score=68.39 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=36.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+|.||.+++..|++.|.+|++++|+.++++...
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~ 159 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELA 159 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5899999999999999999999999999999998776543
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00051 Score=69.12 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=50.8
Q ss_pred ceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.||..++..|+. ...+|++||++++++++..+.+.. .+ + .+. .+++ +.
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~ 185 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEA 185 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHH
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHH
Confidence 3589999999999999999887 346899999999988765432211 11 0 122 3344 45
Q ss_pred cCCCCEEEEeccCC
Q 008576 224 FKDVDMVIEAIIEN 237 (561)
Q Consensus 224 l~~aDlVieav~e~ 237 (561)
+ ++|+||.|+|..
T Consensus 186 v-~aDvVi~aTp~~ 198 (322)
T 1omo_A 186 S-RCDVLVTTTPSR 198 (322)
T ss_dssp T-SSSEEEECCCCS
T ss_pred h-CCCEEEEeeCCC
Confidence 7 899999999853
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00015 Score=69.49 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=29.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcE-EEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPV-ILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~ 180 (561)
+||+|||+|.||..++..+...|++| .++|+++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~ 34 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG 34 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc
Confidence 38999999999999999999889997 6999884
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00031 Score=72.30 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=36.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
-++|+|||+|.||..+++.+...|.+|+++|+++++++.+
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~ 207 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 3689999999999999999999999999999999887654
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00028 Score=73.01 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=59.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G~-------------~-~~sL~eal~~ 266 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEGY-------------Q-VLLVEDVVEE 266 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------E-ECCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhCC-------------e-ecCHHHHHhh
Confidence 5899999999999999999999999999999987654322 1221 1 1233 45789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||.+....--+. .+..+.+++++||+ |++
T Consensus 267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVI-Nvg 298 (436)
T 3h9u_A 267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVC-NIG 298 (436)
T ss_dssp CSEEEECSSCSCSBC----TTTGGGCCTTEEEE-ECS
T ss_pred CCEEEECCCCcCccC----HHHHhhcCCCcEEE-EeC
Confidence 999998654221111 23345578888775 444
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0007 Score=66.33 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=35.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+|.||.+++..|+..|.+|+++||+.++++..
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~l 158 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL 158 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 589999999999999999999999999999999876653
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=3.6e-05 Score=74.36 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=32.5
Q ss_pred eEEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
.|++|| | ++.+|.+||..|++.|.+|++.|++++.+++.
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~ 42 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADF 42 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 455555 5 58899999999999999999999999876653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00062 Score=69.88 Aligned_cols=39 Identities=33% Similarity=0.406 Sum_probs=36.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|+|+|+|.+|..+++.+...|++|+++|+++++++.+
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~ 205 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL 205 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 699999999999999999999999999999999877653
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00065 Score=66.84 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=51.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 224 (561)
-++|.|+|+|.||.+++..|+..|. +|++++|+.+++++..+.+. ..+ .+.. .+++++
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~-------~~~------------~~~~-~~~~~l~ 185 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA-------AYG------------EVKA-QAFEQLK 185 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG-------GGS------------CEEE-EEGGGCC
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-------ccC------------CeeE-eeHHHhc
Confidence 3689999999999999999999996 99999999988765432210 001 1111 122222
Q ss_pred CCCCEEEEeccCCh
Q 008576 225 KDVDMVIEAIIENV 238 (561)
Q Consensus 225 ~~aDlVieav~e~~ 238 (561)
.++|+||.|+|..+
T Consensus 186 ~~aDiIInaTp~gm 199 (281)
T 3o8q_A 186 QSYDVIINSTSASL 199 (281)
T ss_dssp SCEEEEEECSCCCC
T ss_pred CCCCEEEEcCcCCC
Confidence 68999999998553
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0019 Score=65.66 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=52.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .| +...++++
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------~~-------------~~~~~~~~ 68 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------TG-------------ARGHASLT 68 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------HC-------------CEEESCHH
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CceeCCHH
Confidence 457999999999999999999887 67755 899999887653321 11 23345554
Q ss_pred c-c--CCCCEEEEeccCChh
Q 008576 223 S-F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 223 ~-l--~~aDlVieav~e~~~ 239 (561)
+ + .++|+|++|+|....
T Consensus 69 ~ll~~~~~D~V~i~tp~~~h 88 (354)
T 3q2i_A 69 DMLAQTDADIVILTTPSGLH 88 (354)
T ss_dssp HHHHHCCCSEEEECSCGGGH
T ss_pred HHhcCCCCCEEEECCCcHHH
Confidence 4 3 379999999996543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0012 Score=66.56 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=61.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .+. ....+++++
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~ 61 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------LAI------------PVAYGSYEE 61 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------TTC------------CCCBSSHHH
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------cCC------------CceeCCHHH
Confidence 346999999999999999999885 67766 789998876653311 111 123445543
Q ss_pred -cC--CCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHH
Q 008576 224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI 270 (561)
Q Consensus 224 -l~--~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 270 (561)
+. ++|+|++|+|..... ++..+.. ..+. +++-...+..+.+.
T Consensus 62 ll~~~~~D~V~i~tp~~~h~--~~~~~al---~~gk~vl~EKP~~~~~~e~ 107 (330)
T 3e9m_A 62 LCKDETIDIIYIPTYNQGHY--SAAKLAL---SQGKPVLLEKPFTLNAAEA 107 (330)
T ss_dssp HHHCTTCSEEEECCCGGGHH--HHHHHHH---HTTCCEEECSSCCSSHHHH
T ss_pred HhcCCCCCEEEEcCCCHHHH--HHHHHHH---HCCCeEEEeCCCCCCHHHH
Confidence 33 799999999966443 3333322 2232 55544445555543
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00099 Score=66.79 Aligned_cols=71 Identities=8% Similarity=0.002 Sum_probs=48.7
Q ss_pred cceEEEEEcCccchHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+..||+|||+|.||.. ++..+... +++|+ ++|+++++.+...+. .| +...++++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g-------------~~~~~~~~ 60 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----------WR-------------IPYADSLS 60 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----------HT-------------CCBCSSHH
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC-------------CCccCcHH
Confidence 3469999999999997 88888764 77766 999998876543211 01 11233444
Q ss_pred cc-CCCCEEEEeccCChh
Q 008576 223 SF-KDVDMVIEAIIENVS 239 (561)
Q Consensus 223 ~l-~~aDlVieav~e~~~ 239 (561)
++ .++|+|++|+|....
T Consensus 61 ~l~~~~D~V~i~tp~~~h 78 (319)
T 1tlt_A 61 SLAASCDAVFVHSSTASH 78 (319)
T ss_dssp HHHTTCSEEEECSCTTHH
T ss_pred HhhcCCCEEEEeCCchhH
Confidence 43 579999999996543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00046 Score=69.05 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=56.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.||..++..|... ..+|++||++ +.++..+.+.+. .|. .+... ++ +.
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~------~g~-----------~~~~~-~~~ea 180 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRR------CGV-----------PARMA-APADI 180 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHH------HTS-----------CEEEC-CHHHH
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHh------cCC-----------eEEEe-CHHHH
Confidence 36899999999999999998763 4589999999 333322221111 011 12223 44 44
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+.+||+||.|+|.... ++. .+.++++++|....|
T Consensus 181 v~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs 214 (313)
T 3hdj_A 181 AAQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGS 214 (313)
T ss_dssp HHHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCC
T ss_pred HhhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCC
Confidence 7899999999985422 121 234667776655444
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00014 Score=76.77 Aligned_cols=120 Identities=21% Similarity=0.208 Sum_probs=72.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhh-cc-cCCCCCch--------hHHHHHHHHH
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATL-YK-TDKIEPLG--------EAREIFKFAR 70 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~-~~-~~~~~~~~--------~~~~~~~~a~ 70 (561)
|++||++|+|+||+++||||+|||++++++.|.++|++++..+ |..-.. .. +..+.... .+...+..++
T Consensus 198 LlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~-p~Av~~K~l~~~~l~r~~~~~gl~y~~~~~ai~ra~ 276 (556)
T 2w3p_A 198 FCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQS-DRPAHAQGVPLTRIERTDREDGLTYKTLDVTIDRAK 276 (556)
T ss_dssp HTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTC-CCCTTCCCCCCCCCCCEEETTEEEETTEEEEEETTT
T ss_pred HHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCC-hHHHhhhhhhcchhhhhhhhccccHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999853 221110 00 00111100 0000111222
Q ss_pred HHHHhh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHH-HHHHHHHHhhccCCC
Q 008576 71 AQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC-KSLVHIFFAQRGTSK 133 (561)
Q Consensus 71 ~~~~~~-~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~-~~~~~aF~~kr~~~k 133 (561)
+.+..+ .++.+|+.++++++.++. ..|..+..++|. .+.+++|+++.....
T Consensus 277 r~a~~~~~g~~~a~~~~ld~i~aa~------------~~~~~l~~~~el~~All~l~~ne~~~~~ 329 (556)
T 2w3p_A 277 RIATFTAKAPQTEPPASIDAIVAAG------------ANWWPLKFAREFDDAILSMRTNELAVGT 329 (556)
T ss_dssp TEEEEEEECCSSCCCCSHHHHHHHG------------GGSHHHHHHHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHHHhcCCCCCchhhHHHHHHhh------------hcchhhhhhhHHHHHHHhhhhccHHHhH
Confidence 222222 234566666677766543 333444445555 678999999876544
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0031 Score=59.57 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=77.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|.|||+|.+|..-+..|++.|.+|++++.+.... +..+.+.+.+. .+...-..+.+.++
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~----------l~~l~~~~~i~---------~i~~~~~~~dL~~a 92 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAE----------INEWEAKGQLR---------VKRKKVGEEDLLNV 92 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHH----------HHHHHHTTSCE---------EECSCCCGGGSSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHH----------HHHHHHcCCcE---------EEECCCCHhHhCCC
Confidence 689999999999999999999999999998764311 11122233221 11111123468899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--CCCeEEEEeCCCCcH
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTSP 305 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~t~~ 305 (561)
|+||-|+ ++.++-..+ ...+..+ |.+ |... .|+ -..|+.|.- ..+++.-|.+...+|
T Consensus 93 dLVIaAT-~d~~~N~~I----~~~ak~g-i~V-NvvD-----------~p~---~~~f~~Paiv~rg~l~iaIST~G~sP 151 (223)
T 3dfz_A 93 FFIVVAT-NDQAVNKFV----KQHIKND-QLV-NMAS-----------SFS---DGNIQIPAQFSRGRLSLAISTDGASP 151 (223)
T ss_dssp SEEEECC-CCTHHHHHH----HHHSCTT-CEE-EC-------------------CCSEECCEEEEETTEEEEEECTTSCH
T ss_pred CEEEECC-CCHHHHHHH----HHHHhCC-CEE-EEeC-----------Ccc---cCeEEEeeEEEeCCEEEEEECCCCCc
Confidence 9999775 455444333 3334433 333 3221 111 123445543 356777777777888
Q ss_pred HHHHHHHHHHHh
Q 008576 306 QVIVDLLDIGKK 317 (561)
Q Consensus 306 e~~~~~~~l~~~ 317 (561)
.....++.-+..
T Consensus 152 ~la~~iR~~ie~ 163 (223)
T 3dfz_A 152 LLTKRIKEDLSS 163 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0028 Score=63.60 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=48.6
Q ss_pred eEEEEEcCccchH-HHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc-
Q 008576 148 KKVAILGGGLMGS-GIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~-~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 224 (561)
.||+|||+|.||. .++..+.+. +++|+++|++++++++..+ +.|. . ....++.+.+
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~----------~~g~-~----------~~~~~~~~~l~ 61 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLAT----------RYRV-S----------ATCTDYRDVLQ 61 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHH----------HTTC-C----------CCCSSTTGGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH----------HcCC-C----------ccccCHHHHhh
Confidence 5899999999998 488888765 7788899999988765321 1111 0 0022233445
Q ss_pred CCCCEEEEeccCCh
Q 008576 225 KDVDMVIEAIIENV 238 (561)
Q Consensus 225 ~~aDlVieav~e~~ 238 (561)
.++|+|++|+|...
T Consensus 62 ~~~D~V~i~tp~~~ 75 (323)
T 1xea_A 62 YGVDAVMIHAATDV 75 (323)
T ss_dssp GCCSEEEECSCGGG
T ss_pred cCCCEEEEECCchh
Confidence 68999999999543
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00058 Score=68.87 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=62.3
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCC--c-----EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 148 KKVAILG-GGLMGSGIATALILSNY--P-----VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~--~-----V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
.||+|+| +|.+|..++..|+..|. + ++++|+++ +.++... ++. ...... ....+..
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a------~DL--~~~~~~------~~~~~~~ 69 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVL------MEL--QDCALP------LLKDVIA 69 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH------HHH--HHTCCT------TEEEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhH------hhh--Hhhhhc------ccCCEEE
Confidence 5999999 79999999999999886 6 99999975 2332211 111 111000 1122333
Q ss_pred cc-cccccCCCCEEEEec--cC------------ChhhHHHHHHHHHhhcCCCc
Q 008576 218 VL-DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 218 ~~-~~~~l~~aDlVieav--~e------------~~~~k~~v~~~l~~~~~~~~ 256 (561)
++ +++++++||+||.+. |. |..+.+.+...+.++.+++.
T Consensus 70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~ 123 (333)
T 5mdh_A 70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123 (333)
T ss_dssp ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 33 457899999999875 21 33466777788888877765
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00098 Score=65.19 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=49.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||+|.||.+++..|+..|. +|++++|+.++.+...+.+ +. ....++. +.+
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~----------~~-------------~~~~~~~-~~~ 175 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY----------GY-------------AYINSLE-NQQ 175 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH----------TC-------------EEESCCT-TCC
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC-------------ccchhhh-ccc
Confidence 589999999999999999999997 8999999998766533211 10 1111222 468
Q ss_pred CCEEEEeccCC
Q 008576 227 VDMVIEAIIEN 237 (561)
Q Consensus 227 aDlVieav~e~ 237 (561)
+|+||.|+|..
T Consensus 176 ~DivInaTp~g 186 (271)
T 1npy_A 176 ADILVNVTSIG 186 (271)
T ss_dssp CSEEEECSSTT
T ss_pred CCEEEECCCCC
Confidence 99999999854
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=66.57 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=50.0
Q ss_pred ccceEEEEEcCccchHHHHHHHH-h-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALI-L-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la-~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+++.||+|||+|.||..++..+. . .|++ |.++|+++++++...+ +.|. ....+++
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g~------------~~~~~~~ 63 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELGV------------ETTYTNY 63 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTCC------------SEEESCH
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhCC------------CcccCCH
Confidence 34579999999999999999988 5 4777 4688999987654221 1121 0123444
Q ss_pred cc-cC--CCCEEEEeccCChh
Q 008576 222 ES-FK--DVDMVIEAIIENVS 239 (561)
Q Consensus 222 ~~-l~--~aDlVieav~e~~~ 239 (561)
++ +. ++|+|++|+|....
T Consensus 64 ~~~l~~~~~D~V~i~tp~~~h 84 (346)
T 3cea_A 64 KDMIDTENIDAIFIVAPTPFH 84 (346)
T ss_dssp HHHHTTSCCSEEEECSCGGGH
T ss_pred HHHhcCCCCCEEEEeCChHhH
Confidence 43 33 69999999996543
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=66.95 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=61.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .| +...+++++
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g-------------~~~~~~~~~~ 61 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR----------YN-------------CAGDATMEAL 61 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH----------HT-------------CCCCSSHHHH
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------cC-------------CCCcCCHHHH
Confidence 36999999999999999999887 78854 889999887653321 01 112344433
Q ss_pred c--CCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHHH
Q 008576 224 F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIG 271 (561)
Q Consensus 224 l--~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 271 (561)
+ .++|+|++|+|..... ++..+. +..+. +++-...+..+.+..
T Consensus 62 l~~~~~D~V~i~tp~~~h~--~~~~~a---l~~gk~vl~EKP~~~~~~~~~ 107 (354)
T 3db2_A 62 LAREDVEMVIITVPNDKHA--EVIEQC---ARSGKHIYVEKPISVSLDHAQ 107 (354)
T ss_dssp HHCSSCCEEEECSCTTSHH--HHHHHH---HHTTCEEEEESSSCSSHHHHH
T ss_pred hcCCCCCEEEEeCChHHHH--HHHHHH---HHcCCEEEEccCCCCCHHHHH
Confidence 3 5799999999976543 222222 22333 555444455555443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00048 Score=67.44 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=50.1
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
||+|| | ++.+|.++|..|++.|.+|++.|++++.+++..+.+.... ..+..+..+++++++..+.+. +.+..
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~-----~~~G~ 103 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGA-VGIQADSANLAELDRLYEKVK-----AEAGR 103 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTC-EEEECCTTCHHHHHHHHHHHH-----HHHSC
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCe-EEEEecCCCHHHHHHHHHHHH-----HHcCC
Confidence 67777 4 4789999999999999999999999998877554321000 001122333444433332221 23566
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|.+.
T Consensus 104 iDiLVNNA 111 (273)
T 4fgs_A 104 IDVLFVNA 111 (273)
T ss_dssp EEEEEECC
T ss_pred CCEEEECC
Confidence 78888765
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0012 Score=64.63 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=36.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
-+++.|+|+|.+|.+++..|+..|. +|++++|+.+++++..
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la 161 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR 161 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 3689999999999999999999996 9999999998876643
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00012 Score=71.89 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=34.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (561)
-++|.|||+|.||.+++..|+..|. +|++++|+.++.++
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~ 156 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN 156 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 3589999999999999999999999 99999999876543
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=67.50 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=66.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
=++|+|||-|.-|.+-|+.|..+|.+|++--|.....+.. +.+++..+.| ....+-.++++.
T Consensus 37 gK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~G-------------f~v~~~~eA~~~ 98 (491)
T 3ulk_A 37 GKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATENG-------------FKVGTYEELIPQ 98 (491)
T ss_dssp TSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHTT-------------CEEEEHHHHGGG
T ss_pred CCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHCC-------------CEecCHHHHHHh
Confidence 3799999999999999999999999998876643321110 1122222333 222233356899
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
||+|+..+|+. ...+++++|.++++++..+.
T Consensus 99 ADvV~~L~PD~--~q~~vy~~I~p~lk~G~~L~ 129 (491)
T 3ulk_A 99 ADLVINLTPDK--QHSDVVRTVQPLMKDGAALG 129 (491)
T ss_dssp CSEEEECSCGG--GHHHHHHHHGGGSCTTCEEE
T ss_pred CCEEEEeCChh--hHHHHHHHHHhhCCCCCEEE
Confidence 99999999964 55678899999999998775
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0012 Score=67.22 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=35.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|+|+|+|.||..+|..|...|++|+++|++++++++
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~ 211 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSA 211 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 58999999999999999999999999999999987654
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0026 Score=64.45 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=60.1
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (561)
.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .+ .....+++++ +
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~------------~~~~~~~~~~ll 60 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------LG------------VEKAYKDPHELI 60 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------HT------------CSEEESSHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------hC------------CCceeCCHHHHh
Confidence 5999999999999999999875 67765 789999887653321 11 1112345543 3
Q ss_pred C--CCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHH
Q 008576 225 K--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI 270 (561)
Q Consensus 225 ~--~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 270 (561)
. ++|+|++|+|..... ++..+. +..+. +++--..+..+.+.
T Consensus 61 ~~~~~D~V~i~tp~~~h~--~~~~~a---l~~gk~v~~EKP~~~~~~e~ 104 (344)
T 3ezy_A 61 EDPNVDAVLVCSSTNTHS--ELVIAC---AKAKKHVFCEKPLSLNLADV 104 (344)
T ss_dssp HCTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEEESCSCSCHHHH
T ss_pred cCCCCCEEEEcCCCcchH--HHHHHH---HhcCCeEEEECCCCCCHHHH
Confidence 3 799999999965432 333322 22333 45444445555543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0018 Score=65.19 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=47.3
Q ss_pred EEEEEcCccchHHH-HHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC
Q 008576 149 KVAILGGGLMGSGI-ATALILSNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (561)
Q Consensus 149 kV~VIG~G~mG~~i-A~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~ 225 (561)
||+|||+|.||..+ +..+.+.|++|+ ++|+++++++...+ +.+. ....+++++ +.
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~----------~~g~------------~~~~~~~~~~l~ 59 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYAT----------ENGI------------GKSVTSVEELVG 59 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHH----------HTTC------------SCCBSCHHHHHT
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHH----------HcCC------------CcccCCHHHHhc
Confidence 79999999999998 777777778765 88999987654321 1121 112344443 33
Q ss_pred --CCCEEEEeccCCh
Q 008576 226 --DVDMVIEAIIENV 238 (561)
Q Consensus 226 --~aDlVieav~e~~ 238 (561)
++|+|++|+|...
T Consensus 60 ~~~~D~V~i~tp~~~ 74 (332)
T 2glx_A 60 DPDVDAVYVSTTNEL 74 (332)
T ss_dssp CTTCCEEEECSCGGG
T ss_pred CCCCCEEEEeCChhH
Confidence 5999999999654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0029 Score=63.68 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=60.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
+.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .+ +. .+++++
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~-------------~~-~~~~~~~ 58 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------YG-------------CE-VRTIDAI 58 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-------------CE-ECCHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------hC-------------CC-cCCHHHH
Confidence 36999999999999999999885 77866 799999886653311 11 12 334433
Q ss_pred cC--CCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHHH
Q 008576 224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIG 271 (561)
Q Consensus 224 l~--~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 271 (561)
+. ++|+|++|+|..... ++..+.. ..+. +++-...+..+.+..
T Consensus 59 l~~~~~D~V~i~tp~~~h~--~~~~~al---~~gk~v~~EKP~~~~~~~~~ 104 (331)
T 4hkt_A 59 EAAADIDAVVICTPTDTHA--DLIERFA---RAGKAIFCEKPIDLDAERVR 104 (331)
T ss_dssp HHCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEECSCSCSSHHHHH
T ss_pred hcCCCCCEEEEeCCchhHH--HHHHHHH---HcCCcEEEecCCCCCHHHHH
Confidence 33 799999999965443 3333322 2233 555444455555433
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0017 Score=67.01 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=58.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|+|.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.+..
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G~-------------~-v~~Leeal~~ 275 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDGF-------------R-LVKLNEVIRQ 275 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------E-ECCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcCC-------------E-eccHHHHHhc
Confidence 6899999999999999999999999999999987544321 1221 1 1123 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+|+||.| +.+..+.. .+....++++++|+ |++.
T Consensus 276 ADIVi~a-tgt~~lI~---~e~l~~MK~gailI-Nvgr 308 (435)
T 3gvp_A 276 VDIVITC-TGNKNVVT---REHLDRMKNSCIVC-NMGH 308 (435)
T ss_dssp CSEEEEC-SSCSCSBC---HHHHHHSCTTEEEE-ECSS
T ss_pred CCEEEEC-CCCcccCC---HHHHHhcCCCcEEE-EecC
Confidence 9999997 43332211 13334567888775 4443
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=67.43 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=60.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.+|..+|+.+...|.+|+++|+++.....+. ..|. .. .++ +.++.
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G~-------------~v-v~LeElL~~ 302 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDGF-------------EV-VTLDDAAST 302 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC-------------EE-CCHHHHGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcCc-------------ee-ccHHHHHhh
Confidence 6899999999999999999999999999999986543321 1121 11 123 34788
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
||+|+.+....--+. ++....++++++|+ |++..
T Consensus 303 ADIVv~atgt~~lI~----~e~l~~MK~GAILI-NvGRg 336 (464)
T 3n58_A 303 ADIVVTTTGNKDVIT----IDHMRKMKDMCIVG-NIGHF 336 (464)
T ss_dssp CSEEEECCSSSSSBC----HHHHHHSCTTEEEE-ECSSS
T ss_pred CCEEEECCCCccccC----HHHHhcCCCCeEEE-EcCCC
Confidence 999999864321122 23344568888775 66543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0049 Score=64.02 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=36.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|.|.+|..++..|...|++|+++|.|++.++.+.
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~ 44 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLR 44 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 4799999999999999999999999999999999887643
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0017 Score=56.73 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=53.9
Q ss_pred eEEEEEcC----ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++|+|||+ |.||..++..|.+.|++ +|++|+..... ....+....++++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e 66 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD 66 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence 58999999 89999999999999997 66666652110 0012233445555
Q ss_pred c-CCCCEEEEeccCChhhHHHHHHHHHhhcCCCcee
Q 008576 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 224 l-~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii 258 (561)
+ ..+|++|.++|. +...++++++.+.-. ..++
T Consensus 67 l~~~vDlavi~vp~--~~~~~v~~~~~~~gi-~~i~ 99 (140)
T 1iuk_A 67 LKEPVDILDVFRPP--SALMDHLPEVLALRP-GLVW 99 (140)
T ss_dssp CCSCCSEEEECSCH--HHHTTTHHHHHHHCC-SCEE
T ss_pred CCCCCCEEEEEeCH--HHHHHHHHHHHHcCC-CEEE
Confidence 4 469999999984 555666666655433 3444
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0011 Score=65.14 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=37.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~ 189 (561)
+++.|+|+|.+|.+++..|+..|. +|++++|+.++++...+.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~ 170 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 589999999999999999999998 699999999887765433
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0021 Score=65.12 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=49.9
Q ss_pred eEEEEEcCccchHHHHHHHH-h-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALI-L-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.||+|||+|.||..++..+. . .+++|+ ++|+++++++...+. .|. .....+++++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------~g~-----------~~~~~~~~~~l 61 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------YQL-----------NATVYPNDDSL 61 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------TTC-----------CCEEESSHHHH
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-----------CCeeeCCHHHH
Confidence 58999999999999999998 5 477765 889999887653311 110 1223455544
Q ss_pred c--CCCCEEEEeccCChh
Q 008576 224 F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 224 l--~~aDlVieav~e~~~ 239 (561)
+ .++|+|++|+|....
T Consensus 62 l~~~~~D~V~i~tp~~~h 79 (344)
T 3mz0_A 62 LADENVDAVLVTSWGPAH 79 (344)
T ss_dssp HHCTTCCEEEECSCGGGH
T ss_pred hcCCCCCEEEECCCchhH
Confidence 3 359999999996544
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0037 Score=63.65 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=63.5
Q ss_pred ceEEEEEc-CccchHHHHHHHHhCCC--c---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cc
Q 008576 147 VKKVAILG-GGLMGSGIATALILSNY--P---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VL 219 (561)
Q Consensus 147 ~~kV~VIG-~G~mG~~iA~~la~~G~--~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~ 219 (561)
..||+|+| +|.+|.+++..++..+. + |.++|.+.+..+...+. ..++ ....... .+..+.. +.
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G--~amD--L~h~~~p------~~~~v~i~~~ 101 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEG--VAME--LEDSLYP------LLREVSIGID 101 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHH--HHHH--HHTTTCT------TEEEEEEESC
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHH--HHHh--HHhhhhh------hcCCcEEecC
Confidence 46999999 79999999999999875 3 88877654332221111 0111 1111110 1122232 34
Q ss_pred cccccCCCCEEEEec--cC------------ChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 220 DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 220 ~~~~l~~aDlVieav--~e------------~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+++++++||+||.+. |- |..+.+.+...+.++..++++|+..|
T Consensus 102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvs 158 (375)
T 7mdh_A 102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 158 (375)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 578899999999875 21 23455666667777766777665444
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0011 Score=65.04 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=35.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (561)
+++.|+|+|.+|.+++..|+..|. +|++++|+.+++++
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~ 161 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSE 161 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 689999999999999999999998 89999999987654
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0044 Score=62.92 Aligned_cols=72 Identities=18% Similarity=0.092 Sum_probs=50.3
Q ss_pred ccceEEEEEcCccchH-HHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 145 RRVKKVAILGGGLMGS-GIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~-~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
++..||+|||+|.||. .++..+.+. +++|+ ++|+++++++...+. .| +...+++
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~ 81 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----------FG-------------GEPVEGY 81 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----------HC-------------SEEEESH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CCCcCCH
Confidence 4456999999999998 788888877 77765 889999876653311 01 1223455
Q ss_pred cc-c--CCCCEEEEeccCChh
Q 008576 222 ES-F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 222 ~~-l--~~aDlVieav~e~~~ 239 (561)
++ + .++|+|++|+|....
T Consensus 82 ~~ll~~~~~D~V~i~tp~~~h 102 (350)
T 3rc1_A 82 PALLERDDVDAVYVPLPAVLH 102 (350)
T ss_dssp HHHHTCTTCSEEEECCCGGGH
T ss_pred HHHhcCCCCCEEEECCCcHHH
Confidence 43 3 368999999996644
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00069 Score=63.75 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
+||.|.|+ |.+|..++..|++.|++|++.+|+++.++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD 39 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 47999988 999999999999999999999999887553
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0011 Score=66.47 Aligned_cols=93 Identities=19% Similarity=0.147 Sum_probs=58.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
..||+|||+|.||..++..+.+. ++++ .++|+++++++... ..+...+++++
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~-------------------------~~~~~~~~~~~~ 64 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVP-------------------------PGCVIESDWRSV 64 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCC-------------------------TTCEEESSTHHH
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHH-------------------------hhCcccCCHHHH
Confidence 46999999999999999999886 6764 59999988654311 00223445543
Q ss_pred c--CCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHH
Q 008576 224 F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL 269 (561)
Q Consensus 224 l--~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~ 269 (561)
+ .++|+|++|+|.... .++..+. +..+. +++-...+..+.+
T Consensus 65 l~~~~~D~V~i~tp~~~h--~~~~~~a---l~~Gk~v~~eKP~~~~~~~ 108 (315)
T 3c1a_A 65 VSAPEVEAVIIATPPATH--AEITLAA---IASGKAVLVEKPLTLDLAE 108 (315)
T ss_dssp HTCTTCCEEEEESCGGGH--HHHHHHH---HHTTCEEEEESSSCSCHHH
T ss_pred hhCCCCCEEEEeCChHHH--HHHHHHH---HHCCCcEEEcCCCcCCHHH
Confidence 4 379999999996543 2333332 23344 4544344555544
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0011 Score=63.97 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=31.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
++|.|||+|.+|+.+|..|+..|. +|+++|.+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 589999999999999999999997 899999987
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0023 Score=66.39 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=34.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (561)
++|+|||+|.||..+++.+...|. +|+++|+++++++.
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~ 206 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVE 206 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 589999999999999999999998 89999999987643
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0031 Score=62.16 Aligned_cols=75 Identities=20% Similarity=0.131 Sum_probs=50.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|.|+|+|.||.++|..|++.| +|+++|++.++++...+.+.... + ... .. .+...+-.+.+.++
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~-~~~-~~-----~~d~~~~~~~~~~~ 194 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------N-KKF-GE-----EVKFSGLDVDLDGV 194 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------T-CCH-HH-----HEEEECTTCCCTTC
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------c-ccc-ce-----eEEEeeHHHhhCCC
Confidence 58999999999999999999999 99999999987766443321100 0 000 00 01111113457889
Q ss_pred CEEEEeccC
Q 008576 228 DMVIEAIIE 236 (561)
Q Consensus 228 DlVieav~e 236 (561)
|+||.|++.
T Consensus 195 DilVn~ag~ 203 (287)
T 1nvt_A 195 DIIINATPI 203 (287)
T ss_dssp CEEEECSCT
T ss_pred CEEEECCCC
Confidence 999999873
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0032 Score=64.26 Aligned_cols=69 Identities=29% Similarity=0.283 Sum_probs=49.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
..||+|||+|.||...+..+... +++|+ ++|+++++++.+. +.| +...+++++
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~g-------------~~~~~~~~~l 60 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QKG-------------LKIYESYEAV 60 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TTT-------------CCBCSCHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hcC-------------CceeCCHHHH
Confidence 46899999999999999988876 67765 7899998764321 111 223445544
Q ss_pred c--CCCCEEEEeccCChh
Q 008576 224 F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 224 l--~~aDlVieav~e~~~ 239 (561)
+ .++|+|++|+|....
T Consensus 61 l~~~~~D~V~i~tp~~~h 78 (359)
T 3e18_A 61 LADEKVDAVLIATPNDSH 78 (359)
T ss_dssp HHCTTCCEEEECSCGGGH
T ss_pred hcCCCCCEEEEcCCcHHH
Confidence 3 379999999996543
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0052 Score=53.90 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=58.4
Q ss_pred eEEEEEcC----ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++|+|||+ |.+|..++..|.+.|++ +|++|+.. +. ...+....++++
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~ 73 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD 73 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence 58999999 79999999999999997 55655542 10 011233344555
Q ss_pred c-CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc
Q 008576 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT 274 (561)
Q Consensus 224 l-~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~ 274 (561)
+ ..+|++|.++|. +...+++.++.+.- ...++.. ++..-.++.+..
T Consensus 74 l~~~vDlvvi~vp~--~~~~~vv~~~~~~g-i~~i~~~--~g~~~~~l~~~a 120 (144)
T 2d59_A 74 IPDKIEVVDLFVKP--KLTMEYVEQAIKKG-AKVVWFQ--YNTYNREASKKA 120 (144)
T ss_dssp CSSCCSEEEECSCH--HHHHHHHHHHHHHT-CSEEEEC--TTCCCHHHHHHH
T ss_pred cCCCCCEEEEEeCH--HHHHHHHHHHHHcC-CCEEEEC--CCchHHHHHHHH
Confidence 4 469999999984 56667777665532 2345432 333334444433
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0046 Score=64.90 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=58.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|+|+|.+|.++|..|+..|.+|+++|+++.....+. ..+ .. ..+. +.+..
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-----------~~g-------------~d-v~~lee~~~~ 320 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQAT-----------MEG-------------LQ-VLTLEDVVSE 320 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CE-ECCGGGTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-----------HhC-------------Cc-cCCHHHHHHh
Confidence 5899999999999999999999999999999998765432 112 11 1223 34678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
+|+|+++.....-+..+ ....++++.+|+..
T Consensus 321 aDvVi~atG~~~vl~~e----~l~~mk~gaiVvNa 351 (488)
T 3ond_A 321 ADIFVTTTGNKDIIMLD----HMKKMKNNAIVCNI 351 (488)
T ss_dssp CSEEEECSSCSCSBCHH----HHTTSCTTEEEEES
T ss_pred cCEEEeCCCChhhhhHH----HHHhcCCCeEEEEc
Confidence 99999886432222222 34456778877543
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0068 Score=61.70 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=50.8
Q ss_pred ccceEEEEEcCccchHHHHHHHH-h-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALI-L-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+...||+|||+|.||..++..+. . .+++|+ ++|+++++++...+. .|. .....+++
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~-----------~~~~~~~~ 79 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------YAI-----------EAKDYNDY 79 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------HTC-----------CCEEESSH
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------hCC-----------CCeeeCCH
Confidence 33469999999999999999998 4 377765 899999887653321 110 12234455
Q ss_pred cc-c--CCCCEEEEeccCChh
Q 008576 222 ES-F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 222 ~~-l--~~aDlVieav~e~~~ 239 (561)
++ + .++|+|++|+|....
T Consensus 80 ~~ll~~~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 80 HDLINDKDVEVVIITASNEAH 100 (357)
T ss_dssp HHHHHCTTCCEEEECSCGGGH
T ss_pred HHHhcCCCCCEEEEcCCcHHH
Confidence 43 3 368999999996544
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0015 Score=66.75 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=36.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+|.+|..+++.+...|.+|+++|+++++++.+.
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~ 207 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE 207 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 7999999999999999999999999999999998877643
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.003 Score=62.99 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=35.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC---HHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~ 187 (561)
+++.|+|+|.+|.+++..|+..|. +|++++|+ .+++++..
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la 198 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTV 198 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHH
Confidence 589999999999999999999998 89999999 77666543
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.013 Score=60.95 Aligned_cols=149 Identities=14% Similarity=0.157 Sum_probs=82.3
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCC------C-CHHHHHhh--hcccc
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGK------M-TQEKFEKT--ISLLT 216 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~------~-~~~~~~~~--~~~i~ 216 (561)
-||+|||+|.||..++..+... +.+ |.++|+++++++.+.++. + |. . +..++.+. .....
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~---y------G~~~~~~~~~~~~~i~~a~~~g~~~ 94 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTA---Y------GDEENAREATTESAMTRAIEAGKIA 94 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHH---H------SSSTTEEECSSHHHHHHHHHTTCEE
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh---c------CCccccccccchhhhhhhhccCCce
Confidence 5899999999999999887754 555 568899998876643211 0 10 0 11111111 11234
Q ss_pred ccccccc-c--CCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHH---HHHhhccCccceecccccCCC
Q 008576 217 GVLDYES-F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPA 289 (561)
Q Consensus 217 ~~~~~~~-l--~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~P~ 289 (561)
.++|+++ + .+.|+|++|+|....-..-... .+..+. +++.|. .+... +|.+..... |..
T Consensus 95 v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~----AL~AGKHVv~~nk-~l~~~eg~eL~~~A~e~----Gvv----- 160 (446)
T 3upl_A 95 VTDDNDLILSNPLIDVIIDATGIPEVGAETGIA----AIRNGKHLVMMNV-EADVTIGPYLKAQADKQ----GVI----- 160 (446)
T ss_dssp EESCHHHHHTCTTCCEEEECSCCHHHHHHHHHH----HHHTTCEEEECCH-HHHHHHHHHHHHHHHHH----TCC-----
T ss_pred EECCHHHHhcCCCCCEEEEcCCChHHHHHHHHH----HHHcCCcEEecCc-ccCHHHHHHHHHHHHHh----CCe-----
Confidence 5667754 3 3699999999743111222222 233344 343332 22222 222222111 111
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.......+.....+.++.+.+|..++.++
T Consensus 161 -------l~~~~gdqp~~~~eLv~~a~~~G~~~v~~G 190 (446)
T 3upl_A 161 -------YSLGAGDEPSSCMELIEFVSALGYEVVSAG 190 (446)
T ss_dssp -------EEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred -------eeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence 112222347777788899999999999987
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0028 Score=63.20 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=35.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC---HHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~ 187 (561)
+++.|+|+|.+|.+++..|+..|. +|++++|+ .+++++..
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la 192 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFA 192 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHH
Confidence 689999999999999999999998 89999999 66655433
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0017 Score=68.68 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=37.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-+||.|+|+|.+|..+|..|...||+|+++|.|++.++...
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~ 43 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ 43 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 36899999999999999999999999999999999887643
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0055 Score=62.48 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=48.8
Q ss_pred ceEEEEEcCccchHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 147 VKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
..||+|||+|.||.. ++..+... +.+|+ ++|+++++++...+ .+......+++++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------------~~~~~~~~~~~~~ 62 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR----------------------FISDIPVLDNVPA 62 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG----------------------TSCSCCEESSHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH----------------------hcCCCcccCCHHH
Confidence 469999999999985 88888776 67765 88999987654221 1112233456654
Q ss_pred -c--CCCCEEEEeccCCh
Q 008576 224 -F--KDVDMVIEAIIENV 238 (561)
Q Consensus 224 -l--~~aDlVieav~e~~ 238 (561)
+ .+.|+|++|+|...
T Consensus 63 ll~~~~vD~V~i~tp~~~ 80 (359)
T 3m2t_A 63 MLNQVPLDAVVMAGPPQL 80 (359)
T ss_dssp HHHHSCCSEEEECSCHHH
T ss_pred HhcCCCCCEEEEcCCcHH
Confidence 3 35799999999543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0032 Score=60.96 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=32.7
Q ss_pred EEEEEcC-c--cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 149 KVAILGG-G--LMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 149 kV~VIG~-G--~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
.+.|-|+ | -+|.+||..|++.|++|++.+++++.+++..+
T Consensus 8 ~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~ 50 (256)
T 4fs3_A 8 TYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEK 50 (256)
T ss_dssp EEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4455586 3 69999999999999999999999887766543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0061 Score=59.52 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=35.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++||.|.|+|.+|..++..|++.|++|++.+++++..+.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 43 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA 43 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence 468999999999999999999999999999999876543
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=66.15 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=58.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++.||+|||+|.||..++..+... +.+| .++|+++++++... +. .+.....+++++
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a-----------~~-----------~~~~~~~~~~~~ 61 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFA-----------NK-----------YHLPKAYDKLED 61 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------C-----------CCCSCEESCHHH
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------HH-----------cCCCcccCCHHH
Confidence 456999999999999999988775 4554 48899987654321 11 011113445544
Q ss_pred -cC--CCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHH
Q 008576 224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI 270 (561)
Q Consensus 224 -l~--~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 270 (561)
+. ++|+|++|+|..... ++..+. +..+. +++-..-+..+.+.
T Consensus 62 ll~~~~~D~V~i~tp~~~h~--~~~~~a---l~aGk~Vl~EKP~a~~~~e~ 107 (329)
T 3evn_A 62 MLADESIDVIYVATINQDHY--KVAKAA---LLAGKHVLVEKPFTLTYDQA 107 (329)
T ss_dssp HHTCTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEEESSCCSSHHHH
T ss_pred HhcCCCCCEEEECCCcHHHH--HHHHHH---HHCCCeEEEccCCcCCHHHH
Confidence 44 799999999965432 333322 22333 55544445555543
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0044 Score=62.52 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=49.4
Q ss_pred ceEEEEEcCccchH-HHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGS-GIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~-~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
..||+|||+|.||. .++..+...|++| .++|+++++++...++ .+.....+|+++
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~~l 61 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------------------FPSVPFAASAEQL 61 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------------------STTCCBCSCHHHH
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------------------cCCCcccCCHHHH
Confidence 45899999999996 6777777778885 6999998876543211 111223455544
Q ss_pred cC--CCCEEEEeccCChh
Q 008576 224 FK--DVDMVIEAIIENVS 239 (561)
Q Consensus 224 l~--~aDlVieav~e~~~ 239 (561)
+. ++|+|++|+|....
T Consensus 62 l~~~~~D~V~i~tp~~~h 79 (336)
T 2p2s_A 62 ITDASIDLIACAVIPCDR 79 (336)
T ss_dssp HTCTTCCEEEECSCGGGH
T ss_pred hhCCCCCEEEEeCChhhH
Confidence 33 69999999996644
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0084 Score=60.36 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=59.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
.||+|||+|.||..++..+...+ ++ |.++|+++++++...++ .+ .-...+++++
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------~~------------~~~~~~~~~~ 60 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------HD------------IPKAYGSYEE 60 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------HT------------CSCEESSHHH
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------cC------------CCcccCCHHH
Confidence 59999999999999999887764 23 56889999887653321 11 1122445544
Q ss_pred -c--CCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHHH
Q 008576 224 -F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIG 271 (561)
Q Consensus 224 -l--~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 271 (561)
+ .++|+|++|+|..... ++..+. +..+. +++--.-+..+.+..
T Consensus 61 ll~~~~vD~V~i~tp~~~H~--~~~~~a---l~~GkhVl~EKP~a~~~~e~~ 107 (334)
T 3ohs_X 61 LAKDPNVEVAYVGTQHPQHK--AAVMLC---LAAGKAVLCEKPMGVNAAEVR 107 (334)
T ss_dssp HHHCTTCCEEEECCCGGGHH--HHHHHH---HHTTCEEEEESSSSSSHHHHH
T ss_pred HhcCCCCCEEEECCCcHHHH--HHHHHH---HhcCCEEEEECCCCCCHHHHH
Confidence 3 3699999999966543 333322 22233 555444445555433
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0037 Score=62.66 Aligned_cols=92 Identities=14% Similarity=0.176 Sum_probs=57.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
..||+|||+|.||..++..+.+. +.+ |.++|++++. +. + . .+...+++++
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~---------------~----------~-gv~~~~d~~~l 55 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DT---------------K----------T-PVFDVADVDKH 55 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SS---------------S----------S-CEEEGGGGGGT
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hh---------------c----------C-CCceeCCHHHH
Confidence 35899999999999999999877 566 4588988643 10 0 0 1223445544
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI 270 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 270 (561)
+.++|+||+|+|.... +..+...+..+. +|++.+.+..+.++
T Consensus 56 l~~~DvViiatp~~~h-----~~~~~~al~aG~~Vv~ekp~~~~~~~~ 98 (320)
T 1f06_A 56 ADDVDVLFLCMGSATD-----IPEQAPKFAQFACTVDTYDNHRDIPRH 98 (320)
T ss_dssp TTTCSEEEECSCTTTH-----HHHHHHHHTTTSEEECCCCCGGGHHHH
T ss_pred hcCCCEEEEcCCcHHH-----HHHHHHHHHCCCEEEECCCCcCCHHHH
Confidence 3789999999986543 222223334444 55554445555544
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0086 Score=61.02 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=59.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+..||+|||+|.||..++..+... ++++ .++|+++++.+...+ +.+. . ......+++++
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~----------~~~~-~--------~~~~~~~~~~~ 65 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY-P--------ESTKIHGSYES 65 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC-C--------TTCEEESSHHH
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-C--------CCCeeeCCHHH
Confidence 346999999999999999988875 5665 589999987654321 1111 0 01223345544
Q ss_pred -cC--CCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHH
Q 008576 224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL 269 (561)
Q Consensus 224 -l~--~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~ 269 (561)
+. ++|+|++|+|..... ++..+ .+..+. +++--..+....+
T Consensus 66 ll~~~~~D~V~i~tp~~~h~--~~~~~---al~aGk~V~~EKP~a~~~~e 110 (362)
T 1ydw_A 66 LLEDPEIDALYVPLPTSLHV--EWAIK---AAEKGKHILLEKPVAMNVTE 110 (362)
T ss_dssp HHHCTTCCEEEECCCGGGHH--HHHHH---HHTTTCEEEECSSCSSSHHH
T ss_pred HhcCCCCCEEEEcCChHHHH--HHHHH---HHHCCCeEEEecCCcCCHHH
Confidence 33 699999999965432 33322 334455 4443233455543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0024 Score=65.37 Aligned_cols=38 Identities=39% Similarity=0.484 Sum_probs=33.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
+||+|||+|.+|..+|..|++ .++|++.|++.+.++++
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~ 54 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKV 54 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH
Confidence 489999999999999998865 58999999999887763
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=66.70 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=36.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC---CcEEEEeCCHHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~ 188 (561)
|+||+|+|+|.+|..++..|++.| .+|+++|++.+++++..+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~ 45 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQ 45 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHH
Confidence 469999999999999999999998 389999999998776443
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0019 Score=60.43 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=33.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE 184 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (561)
+||.|+|+ |.+|..++..|++.|++|++++|+++.++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKIT 38 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhh
Confidence 47999996 99999999999999999999999987654
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0086 Score=62.69 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=51.6
Q ss_pred cccceEEEEEcCccchH-HHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 144 PRRVKKVAILGGGLMGS-GIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 144 ~~~~~kV~VIG~G~mG~-~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
+++..||+|||+|.||. .++..+... +++| .++|+++++++...+ +.|. .. ..+...++
T Consensus 80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~----------~~g~-~~-------~~~~~~~~ 141 (433)
T 1h6d_A 80 EDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA----------EYGV-DP-------RKIYDYSN 141 (433)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH----------HTTC-CG-------GGEECSSS
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-Cc-------ccccccCC
Confidence 34556999999999997 899888775 5664 689999987654321 1121 00 01223455
Q ss_pred ccc-cC--CCCEEEEeccCChh
Q 008576 221 YES-FK--DVDMVIEAIIENVS 239 (561)
Q Consensus 221 ~~~-l~--~aDlVieav~e~~~ 239 (561)
+++ +. ++|+|++|+|....
T Consensus 142 ~~~ll~~~~vD~V~iatp~~~h 163 (433)
T 1h6d_A 142 FDKIAKDPKIDAVYIILPNSLH 163 (433)
T ss_dssp GGGGGGCTTCCEEEECSCGGGH
T ss_pred HHHHhcCCCCCEEEEcCCchhH
Confidence 654 33 79999999996543
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.041 Score=55.11 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=32.1
Q ss_pred cceEEEEEcCccchHH-HHHHHHhCCCcEEEEeCCH
Q 008576 146 RVKKVAILGGGLMGSG-IATALILSNYPVILKEVNE 180 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~ 180 (561)
.++||.|||.|.+|.+ +|..|.+.|++|+++|.++
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4689999999999996 9999999999999999875
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.006 Score=60.67 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=43.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
..||+|||+|.||..++..+.+. +++|+ ++|+++++++. .|.. ....+++.+.
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~~-----------~~~~~~l~~~ 63 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQP-----------FRVVSDIEQL 63 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCTT-----------SCEESSGGGS
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCCC-----------cCCHHHHHhC
Confidence 45999999999999999998874 67876 79999875431 1210 1112233334
Q ss_pred CCCCEEEEeccCCh
Q 008576 225 KDVDMVIEAIIENV 238 (561)
Q Consensus 225 ~~aDlVieav~e~~ 238 (561)
.++|+||+|+|...
T Consensus 64 ~~~DvViiatp~~~ 77 (304)
T 3bio_A 64 ESVDVALVCSPSRE 77 (304)
T ss_dssp SSCCEEEECSCHHH
T ss_pred CCCCEEEECCCchh
Confidence 78999999998543
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0054 Score=62.16 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=49.6
Q ss_pred ccceEEEEEcCccchHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 145 RRVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
++|.||+|||+|.||.. ++..+... +.+|+ ++|++++++++..++ ++.-...+|+
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~d~ 78 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------------------FSVPHAFGSY 78 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------------------HTCSEEESSH
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------------------cCCCeeeCCH
Confidence 45789999999999975 45666654 66765 889999887653321 1111234566
Q ss_pred cc-c--CCCCEEEEeccCChh
Q 008576 222 ES-F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 222 ~~-l--~~aDlVieav~e~~~ 239 (561)
++ + .+.|+|+.|+|....
T Consensus 79 ~ell~~~~iDaV~I~tP~~~H 99 (350)
T 4had_A 79 EEMLASDVIDAVYIPLPTSQH 99 (350)
T ss_dssp HHHHHCSSCSEEEECSCGGGH
T ss_pred HHHhcCCCCCEEEEeCCCchh
Confidence 54 3 568999999997654
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0026 Score=66.97 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=35.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.++|.|+|+|.||..++..|+..|++|+++|++.++++.
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~ 41 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK 41 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence 568999999999999999999999999999999877654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0022 Score=66.39 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
.+|+|||+|.+|..+++.+...|.+|+++|++++.++.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999999876653
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0053 Score=58.40 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=34.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.++|.|+|+|.+|..++..|...|+ |+++|++++.++.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~ 46 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKV 46 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHH
Confidence 3589999999999999999999999 9999999987654
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.001 Score=64.92 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=29.2
Q ss_pred ccceEEEEEc-CccchHHHHHHHHhC-CCcEEE-EeCCHH
Q 008576 145 RRVKKVAILG-GGLMGSGIATALILS-NYPVIL-KEVNEK 181 (561)
Q Consensus 145 ~~~~kV~VIG-~G~mG~~iA~~la~~-G~~V~l-~d~~~~ 181 (561)
|++.||+|+| .|.||..++..+... +++++. +|++..
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~ 44 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGS 44 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTC
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCc
Confidence 4568999999 799999999988765 677664 688743
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.012 Score=55.12 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=33.7
Q ss_pred ceEEEEEcC-ccchHHHHHHHH-hCCCcEEEEeCCHH-HHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALI-LSNYPVILKEVNEK-FLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la-~~G~~V~l~d~~~~-~~~~ 185 (561)
+++|.|.|+ |.+|..++..|+ +.|++|++.+++++ .++.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~ 46 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP 46 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence 345999995 999999999999 89999999999987 5543
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0017 Score=65.20 Aligned_cols=200 Identities=17% Similarity=0.133 Sum_probs=94.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhC---------CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS---------NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~---------G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (561)
|.||+|||+|.||..++..+... +++| .++|++.+..+. . .+.+.+......+.+.
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~-i-d~~~~~~~~~~~~~~~------------ 67 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD-F-SLVEALRMKRETGMLR------------ 67 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS-C-CHHHHHHHHHHHSSCS------------
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc-c-CHHHHHhhhccCcccc------------
Confidence 56999999999999999998875 4454 466777543221 0 0000010010111110
Q ss_pred ccccccc-c--CCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCC--HHHHHhhccCccceecccccCCCC
Q 008576 217 GVLDYES-F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH 290 (561)
Q Consensus 217 ~~~~~~~-l--~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~ 290 (561)
...|+++ + .+.|+||+|+|.+..... .+..+...+..+. +++.|...+. ..++.+..... +.+|+....
T Consensus 68 ~~~d~~~ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~----g~~~~~ea~ 142 (327)
T 3do5_A 68 DDAKAIEVVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERN----GVRLMYEAT 142 (327)
T ss_dssp BCCCHHHHHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHT----TCCEECGGG
T ss_pred CCCCHHHHhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhh----CCcEEEEEE
Confidence 0114433 2 468999999997643211 2333344455555 5555553222 12333322211 233322111
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHH-HHHHcCCCHHHHHHHHHhcCCCcc
Q 008576 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAF-LLVERGTDLYLIDRAITKFGMPMG 369 (561)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~-~l~~~G~~~~~ID~a~~~~G~~~G 369 (561)
.. .+ --.+..+++++. |..+-.+.- |.|-. ++..+ +|.++|.+.+++-.-.+..||.-
T Consensus 143 v~------~g----~Pii~~l~~~l~--~~~I~~I~G----IlnGT----~nyilt~m~~~g~~f~~~l~~Aq~~GyaE- 201 (327)
T 3do5_A 143 VG------GA----MPVVKLAKRYLA--LCEIESVKG----IFNGT----CNYILSRMEEERLPYEHILKEAQELGYAE- 201 (327)
T ss_dssp SS------TT----SCCHHHHHTTTT--TSCEEEEEE----ECCHH----HHHHHHHHHHHCCCHHHHHHHHHHTTSSC-
T ss_pred ee------ec----CHHHHHHHHHhh--CCCccEEEE----EECCC----cCcchhhcCcCCcCHHHHHHHHHHcCCCC-
Confidence 10 00 012344444432 222222211 22222 22221 23357888888776666566632
Q ss_pred HHHHHHHhchHHHHHHH
Q 008576 370 PFRLADLVGFGVAIATG 386 (561)
Q Consensus 370 Pf~~~D~~Gld~~~~~~ 386 (561)
|==..|.-|.|...++.
T Consensus 202 ~DP~~Dv~G~D~a~Kl~ 218 (327)
T 3do5_A 202 ADPSYDVEGIDAALKLV 218 (327)
T ss_dssp SSCHHHHTSHHHHHHHH
T ss_pred CCchhhcCChhHHHHHH
Confidence 12256999999987754
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=61.48 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=35.8
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
|++|| |++.+|.++|..|++.|.+|+++|++++.+++..+.+
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i 51 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL 51 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 66666 4478999999999999999999999999888766554
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0093 Score=62.92 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=35.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhC-CCcEEEEeCCHHHHHH
Q 008576 146 RVKKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEA 185 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~ 185 (561)
.+++|.|+|+|.+|.+++..|++. |++|+++||+.++++.
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~ 62 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQA 62 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHH
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 467999999999999999999998 7899999999987664
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0033 Score=59.91 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=35.7
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
.++|.|.|+ |.+|.++|..|++.|++|++.+++++.+++..+
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 45 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL 45 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 356777776 899999999999999999999999988776443
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0039 Score=64.24 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=35.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
.+|+|+|+|.+|..+++.+...|.+|+++|+++++++.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 589999999999999999999999999999998776553
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0093 Score=58.69 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=36.2
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|+| +|.+|.+++..|++.|++|++++|+.+++++..+
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 5899999 8999999999999999999999999887765443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0095 Score=56.43 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=35.1
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
-++|.|.|+ |.+|..++..|++.|++|++.+|+++.++.
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~ 60 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE 60 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence 468999998 999999999999999999999999887654
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.097 Score=50.17 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=76.3
Q ss_pred cccccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhh---ccC-ccceecccccCCCCCCC
Q 008576 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER---TYS-KDRIVGAHFFSPAHVMP 293 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~-~~r~ig~h~~~P~~~~~ 293 (561)
++|.++++++|++|.-+|-. ...-.+.+++.++++.++|| +||.++|...+... +.+ .-.+..+||-.=|. +.
T Consensus 133 sDD~EAvk~AEi~IlftPfG-~~t~~Iakkii~~lpEgAII-~nTCTipp~~ly~~le~l~R~DvgIsS~HPaaVPg-t~ 209 (358)
T 2b0j_A 133 SDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIV-THACTIPTTKFAKIFKDLGREDLNITSYHPGCVPE-MK 209 (358)
T ss_dssp SCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCTTCEE-EECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTT-TC
T ss_pred cchHHHhcCCCEEEEecCCC-CCcHHHHHHHHhhCcCCCEE-ecccCCCHHHHHHHHHHhCcccCCeeccCCCCCCC-CC
Confidence 44568899999999999853 23457889999999999987 47777887655443 332 24566667654222 22
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
.-....-...+++.+++...+.+..|+.++++.
T Consensus 210 Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP 242 (358)
T 2b0j_A 210 GQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP 242 (358)
T ss_dssp CCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred CccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence 223445556789999999999999999999885
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.019 Score=58.34 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=46.9
Q ss_pred ceEEEEEcCccchHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 147 VKKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
..||+|||+|.||.. .+..+... +++| .++|++++++.+ +. ......+++++
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~ 59 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------DF------------PDAEVVHELEE 59 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------HC------------TTSEEESSTHH
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hC------------CCCceECCHHH
Confidence 469999999999997 66666655 6776 488999865321 11 12233456654
Q ss_pred -cC--CCCEEEEeccCChh
Q 008576 224 -FK--DVDMVIEAIIENVS 239 (561)
Q Consensus 224 -l~--~aDlVieav~e~~~ 239 (561)
+. ++|+|++|+|....
T Consensus 60 ll~~~~vD~V~i~tp~~~H 78 (358)
T 3gdo_A 60 ITNDPAIELVIVTTPSGLH 78 (358)
T ss_dssp HHTCTTCCEEEECSCTTTH
T ss_pred HhcCCCCCEEEEcCCcHHH
Confidence 33 79999999997654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.011 Score=56.09 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=36.3
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
+++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 45 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHE 45 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 356777776 8899999999999999999999999887765543
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0057 Score=59.98 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=52.4
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+++.|||.|. +|..+|..|...|.+|+++++....++. .+.+++
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~ 210 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT 210 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence 6899999876 7999999999999999999974332220 012578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||.|++-..-++. ..++++++|+...
T Consensus 211 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvg 239 (300)
T 4a26_A 211 ADIVIAAMGQPGYVKG-------EWIKEGAAVVDVG 239 (300)
T ss_dssp CSEEEECSCCTTCBCG-------GGSCTTCEEEECC
T ss_pred CCEEEECCCCCCCCcH-------HhcCCCcEEEEEe
Confidence 9999999974322222 3468888877543
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0065 Score=59.78 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=31.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
-.||.|||+|..|+.++..|+..|. +++++|.|.
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 3599999999999999999999997 899999875
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0042 Score=59.06 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=34.3
Q ss_pred cccceEEEEEcC-ccchHHHHHHHHhCC-CcEEEEeCCHHHH
Q 008576 144 PRRVKKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFL 183 (561)
Q Consensus 144 ~~~~~kV~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~ 183 (561)
++.|++|.|.|+ |.+|..++..|+..| ++|++++|+++.+
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~ 61 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI 61 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence 345788999985 999999999999999 8999999998754
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.025 Score=59.30 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=51.4
Q ss_pred ccceEEEEEcCccchHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc---
Q 008576 145 RRVKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL--- 219 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--- 219 (561)
+...||+|||+|.||...+..+... |++| .++|+++++++...+.+. +.|. ......+
T Consensus 18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~ 80 (444)
T 2ixa_A 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGN 80 (444)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSST
T ss_pred CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCC
Confidence 3456999999999999999988875 6775 589999988766432210 1121 0012223
Q ss_pred -cccc-cC--CCCEEEEeccCChh
Q 008576 220 -DYES-FK--DVDMVIEAIIENVS 239 (561)
Q Consensus 220 -~~~~-l~--~aDlVieav~e~~~ 239 (561)
++++ +. ++|+|++|+|....
T Consensus 81 ~~~~~ll~~~~vD~V~i~tp~~~h 104 (444)
T 2ixa_A 81 DDYKNMLKDKNIDAVFVSSPWEWH 104 (444)
T ss_dssp TTHHHHTTCTTCCEEEECCCGGGH
T ss_pred CCHHHHhcCCCCCEEEEcCCcHHH
Confidence 5544 43 69999999996543
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.00028 Score=67.72 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=30.7
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLE 184 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (561)
|++|| | ++.||.++|..|++.|.+|++.|++++.++
T Consensus 12 K~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~ 49 (242)
T 4b79_A 12 QQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVH 49 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHh
Confidence 56666 4 488999999999999999999999987654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0042 Score=60.17 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=52.1
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+++.|||.| .+|..+|..|...|.+|++++++...++ +.+++
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~ 193 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS 193 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence 589999987 5899999999999999999986432221 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||.+++...-++. ..++++++|+...+
T Consensus 194 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi 223 (276)
T 3ngx_A 194 SKIVVVAVGRPGFLNR-------EMVTPGSVVIDVGI 223 (276)
T ss_dssp SSEEEECSSCTTCBCG-------GGCCTTCEEEECCC
T ss_pred CCEEEECCCCCccccH-------hhccCCcEEEEecc
Confidence 9999999974322222 34688888775443
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.054 Score=55.05 Aligned_cols=70 Identities=10% Similarity=0.117 Sum_probs=48.5
Q ss_pred ceEEEEEcCccchH-HHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGS-GIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~-~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
..||+|||+|.+|. .++..+...+.+| .++|+++++++...+. .+.....+++++
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~l 83 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------------------YADARRIATAEEI 83 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------------------SSSCCEESCHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHHH
Confidence 35899999999995 5677777788884 5889999887653321 111233456544
Q ss_pred c--CCCCEEEEeccCCh
Q 008576 224 F--KDVDMVIEAIIENV 238 (561)
Q Consensus 224 l--~~aDlVieav~e~~ 238 (561)
+ .+.|+|++|+|...
T Consensus 84 l~~~~vD~V~I~tp~~~ 100 (361)
T 3u3x_A 84 LEDENIGLIVSAAVSSE 100 (361)
T ss_dssp HTCTTCCEEEECCCHHH
T ss_pred hcCCCCCEEEEeCChHH
Confidence 3 35899999999543
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.014 Score=59.65 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=47.1
Q ss_pred cceEEEEEcCccchHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
++.||+|||+|.||.. .+..+... +++|+ ++|++++++++ .. ......++++
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~ 60 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-------------DL------------PDVTVIASPE 60 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-------------HC------------TTSEEESCHH
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hC------------CCCcEECCHH
Confidence 3469999999999997 66666665 77764 88999976432 11 1123345554
Q ss_pred c-cC--CCCEEEEeccCChh
Q 008576 223 S-FK--DVDMVIEAIIENVS 239 (561)
Q Consensus 223 ~-l~--~aDlVieav~e~~~ 239 (561)
+ +. ++|+|++|+|....
T Consensus 61 ~ll~~~~~D~V~i~tp~~~H 80 (364)
T 3e82_A 61 AAVQHPDVDLVVIASPNATH 80 (364)
T ss_dssp HHHTCTTCSEEEECSCGGGH
T ss_pred HHhcCCCCCEEEEeCChHHH
Confidence 4 33 79999999996554
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0068 Score=56.95 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=33.8
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
|+||.|.|+ |.+|..++..|++.|++|++.+|+++..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 41 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI 41 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence 579999986 9999999999999999999999997654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.012 Score=56.61 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=35.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 56 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI 56 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45666666 88999999999999999999999998877655443
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.025 Score=57.30 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=47.6
Q ss_pred ceEEEEEcCccchHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 147 VKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
..||+|||+|.||.. .+..+... +++|+ ++|++++++++ .. ......+|+++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~ 61 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------DW------------PAIPVVSDPQM 61 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------TC------------SSCCEESCHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------hC------------CCCceECCHHH
Confidence 469999999999997 67777665 67765 88999876531 11 12233455644
Q ss_pred -c--CCCCEEEEeccCChh
Q 008576 224 -F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 224 -l--~~aDlVieav~e~~~ 239 (561)
+ .+.|+|++|+|....
T Consensus 62 ll~~~~vD~V~i~tp~~~H 80 (352)
T 3kux_A 62 LFNDPSIDLIVIPTPNDTH 80 (352)
T ss_dssp HHHCSSCCEEEECSCTTTH
T ss_pred HhcCCCCCEEEEeCChHHH
Confidence 3 359999999997654
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.087 Score=55.98 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=32.2
Q ss_pred ccceEEEEEcCccchHH-HHHHHHhCCCcEEEEeCCHH
Q 008576 145 RRVKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK 181 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~ 181 (561)
..++||.|||.|..|.+ +|..|.+.|++|+++|.++.
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~ 57 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN 57 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence 45789999999999986 99999999999999998754
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0097 Score=58.35 Aligned_cols=43 Identities=30% Similarity=0.529 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~ 77 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI 77 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 34555565 88999999999999999999999998877655443
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0074 Score=58.21 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 589999999999999999999997 789998763
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0087 Score=57.88 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 50 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARS 50 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 46777766 8999999999999999999999999877665443
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.011 Score=57.16 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAAS 49 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777766 899999999999999999999999987766443
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.033 Score=57.84 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=59.1
Q ss_pred cceEEEEEcCcc---chHHHHHHHHhCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 146 RVKKVAILGGGL---MGSGIATALILSN-YPVI--LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 146 ~~~kV~VIG~G~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
+..||+|||+|. ||...+..+...+ ++|+ ++|++++++++..++ .|. . .....+
T Consensus 36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g~-~---------~~~~~~ 95 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE----------LGL-D---------PSRVYS 95 (417)
T ss_dssp CCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH----------HTC-C---------GGGBCS
T ss_pred CcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH----------cCC-C---------cccccC
Confidence 346999999999 9999888877765 6765 679999887653321 111 0 002344
Q ss_pred cccc-c-------CCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHH
Q 008576 220 DYES-F-------KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI 270 (561)
Q Consensus 220 ~~~~-l-------~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 270 (561)
++++ + .+.|+|++|+|..... ++..+ .+..+. +++--.-+..+.+.
T Consensus 96 ~~~~ll~~~~~~~~~vD~V~I~tp~~~H~--~~~~~---al~aGkhVl~EKPla~~~~ea 150 (417)
T 3v5n_A 96 DFKEMAIREAKLKNGIEAVAIVTPNHVHY--AAAKE---FLKRGIHVICDKPLTSTLADA 150 (417)
T ss_dssp CHHHHHHHHHHCTTCCSEEEECSCTTSHH--HHHHH---HHTTTCEEEEESSSCSSHHHH
T ss_pred CHHHHHhcccccCCCCcEEEECCCcHHHH--HHHHH---HHhCCCeEEEECCCcCCHHHH
Confidence 5543 3 3599999999976543 33222 233344 55443334454443
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0095 Score=58.40 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=52.7
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||.|. +|..+|..|...|.+|++++.+...+. +.+++
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 208 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK 208 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH-------------------------------------HHhcc
Confidence 6999999995 799999999999999999974422111 23688
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||-|++..--++. ..++++++|+....
T Consensus 209 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi 238 (301)
T 1a4i_A 209 GDILVVATGQPEMVKG-------EWIKPGAIVIDCGI 238 (301)
T ss_dssp CSEEEECCCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred CCEEEECCCCcccCCH-------HHcCCCcEEEEccC
Confidence 9999999974322322 23578888876443
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.06 Score=54.17 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=50.0
Q ss_pred ceEEEEEcCc-cchHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 147 VKKVAILGGG-LMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~G-~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
..||+|||+| .||...+..+... +.+| .++|++++++++..++ .+.....+|++
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~ 75 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYE 75 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHH
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------------------hCCCcccCCHH
Confidence 4599999999 8999999998876 4565 6899999887653321 11112345564
Q ss_pred c-c--CCCCEEEEeccCChh
Q 008576 223 S-F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 223 ~-l--~~aDlVieav~e~~~ 239 (561)
+ + .++|+|++|+|....
T Consensus 76 ~ll~~~~vD~V~i~tp~~~H 95 (340)
T 1zh8_A 76 ELLESGLVDAVDLTLPVELN 95 (340)
T ss_dssp HHHHSSCCSEEEECCCGGGH
T ss_pred HHhcCCCCCEEEEeCCchHH
Confidence 4 3 369999999996543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0073 Score=58.35 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|.++|..|++.|++|++.|++.+.+++..
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAA 49 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777766 89999999999999999999999998876644
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.031 Score=56.05 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=30.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~ 180 (561)
+||.|+|+ |.+|+.++..|+..|+ +|+++|+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~ 45 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ 45 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence 58999997 9999999999999996 899999875
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0087 Score=58.46 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=28.9
Q ss_pred ceEEEEEcC-ccchHHHHHHHHh-CCCcEE-EEeCCHH
Q 008576 147 VKKVAILGG-GLMGSGIATALIL-SNYPVI-LKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~-~G~~V~-l~d~~~~ 181 (561)
..||+|+|+ |.||..++..+.. .|++|+ ++|++++
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~ 42 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS 42 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCch
Confidence 469999998 9999999998774 588876 7888764
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.013 Score=56.80 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 63 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ 63 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45667765 899999999999999999999999987765443
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0087 Score=57.55 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=35.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 51 (250)
T 3nyw_A 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI 51 (250)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 35666666 89999999999999999999999998887755443
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0063 Score=58.95 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=35.5
Q ss_pred eEEEEEcC-c-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ | .+|..+|..|++.|++|++.+++.+.++...+
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 65 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRD 65 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 57788898 7 59999999999999999999999988776543
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.01 Score=57.47 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 56 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA 56 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45667765 8999999999999999999999999877665433
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.012 Score=58.51 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=31.3
Q ss_pred ceEEEEEcCccc-hHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGGGLM-GSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~ 181 (561)
-++|.|||+|.| |..+|..|+..|.+|+++|++..
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~ 212 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNI 212 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEE
T ss_pred CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchH
Confidence 369999999976 99999999999999999999843
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.015 Score=56.33 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=35.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 52 (265)
T 3lf2_A 9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL 52 (265)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45666665 88999999999999999999999998887765443
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.012 Score=57.12 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+.
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 54 (264)
T 3ucx_A 12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ 54 (264)
T ss_dssp CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH
Confidence 45666666 7899999999999999999999999887765543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0082 Score=57.50 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAA 52 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56777766 99999999999999999999999988766543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.011 Score=56.63 Aligned_cols=40 Identities=25% Similarity=0.151 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALG 48 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46777766 89999999999999999999999998776544
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0094 Score=58.01 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=51.8
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+++.|||.|. .|..+|..|+..|.+|++++++...++ +.+++
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~ 203 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ 203 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence 6999999876 699999999999999999985432211 23678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||.+++-..-++ .+.++++++|+...
T Consensus 204 ADIVI~Avg~p~~I~-------~~~vk~GavVIDVg 232 (285)
T 3p2o_A 204 ADLIIVAAGCVNLLR-------SDMVKEGVIVVDVG 232 (285)
T ss_dssp CSEEEECSSCTTCBC-------GGGSCTTEEEEECC
T ss_pred CCEEEECCCCCCcCC-------HHHcCCCeEEEEec
Confidence 999999997432222 23467888776543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0081 Score=58.09 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM 47 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777776 8999999999999999999999998876653
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.012 Score=56.60 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=48.6
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+.... ..+..+..+++++.+....+. +.+...
T Consensus 2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~-----~~~g~i 75 (248)
T 3asu_A 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNL-YIAQLDVRNRAAIEEMLASLP-----AEWCNI 75 (248)
T ss_dssp EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTE-EEEECCTTCHHHHHHHHHTSC-----TTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCce-EEEEcCCCCHHHHHHHHHHHH-----HhCCCC
Confidence 4556665 899999999999999999999999987765433221000 001122233333333332221 234578
Q ss_pred CEEEEec
Q 008576 228 DMVIEAI 234 (561)
Q Consensus 228 DlVieav 234 (561)
|++|.+.
T Consensus 76 D~lvnnA 82 (248)
T 3asu_A 76 DILVNNA 82 (248)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 9998865
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.012 Score=58.71 Aligned_cols=43 Identities=14% Similarity=0.400 Sum_probs=36.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+.+
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l 52 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL 52 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 46777776 89999999999999999999999999887755443
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0066 Score=58.85 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 53 (262)
T 3pk0_A 11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVAD 53 (262)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 35555555 8999999999999999999999999887765543
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.017 Score=56.39 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=35.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+.+
T Consensus 28 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 71 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKL 71 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45666665 78999999999999999999999998877655443
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0083 Score=58.70 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|.++|..|++.|++|++.|++++.++...+.
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 54 (281)
T 3svt_A 12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQE 54 (281)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45666665 8999999999999999999999999887765543
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.011 Score=57.60 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=51.4
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+++.|||.|. +|..+|..|...|.+|+++++....++ +.+++
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 204 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK 204 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence 6899999876 799999999999999999975422111 23678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||.|++-..-++. +.++++++|+...
T Consensus 205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvg 233 (285)
T 3l07_A 205 ADILIVAVGKPNFITA-------DMVKEGAVVIDVG 233 (285)
T ss_dssp CSEEEECCCCTTCBCG-------GGSCTTCEEEECC
T ss_pred CCEEEECCCCCCCCCH-------HHcCCCcEEEEec
Confidence 9999999974322222 3467888776543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.061 Score=50.06 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=32.4
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
+||.|.| +|.+|..++..|++.|++|++.+|+++.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~ 37 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV 37 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence 3799998 59999999999999999999999998654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.008 Score=59.03 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+.|.|.|+ |.+|.++|..|++.|++|++.+++.+.+++..
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 69 (283)
T 3v8b_A 29 PVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVA 69 (283)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34566665 88999999999999999999999998876644
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.013 Score=56.39 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=34.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 44 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS 44 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35666665 899999999999999999999999987765443
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0091 Score=57.26 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus 7 k~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~ 47 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAA 47 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46677766 88999999999999999999999998876644
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0094 Score=57.91 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=35.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l 48 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI 48 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 35566665 88999999999999999999999998877655443
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.017 Score=57.86 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=93.8
Q ss_pred cceEEEEEcCccchHHHHHHHHhC-------CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILS-------NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~-------G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
+.-||+|||+|.||+.++..+.+. +.+| .+.|++.+.+.... .+.+......+.+.++ ....
T Consensus 3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~i-dl~~~~~~~~~~g~~~---------~~~~ 72 (325)
T 3ing_A 3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNL-DISSIISNKEKTGRIS---------DRAF 72 (325)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSC-CHHHHHHHHHHHSCSC---------SSBC
T ss_pred ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhccccc-CHHHHHHHhhhcCCCC---------cccC
Confidence 346899999999999999998774 3344 45676643211000 0000000011112111 0011
Q ss_pred cccc-ccc--CCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCC--HHHHHhhccCccceecccccCCCCC
Q 008576 218 VLDY-ESF--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV 291 (561)
Q Consensus 218 ~~~~-~~l--~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~ 291 (561)
++ +.+ .+.|+||+|+|.+... ...+..+...+..+. +++.|...+. ..++.+.... -|.+|+.....
T Consensus 73 --d~~e~l~~~~iDvVVe~T~~~~~~-~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~----~g~~~~~Ea~v 145 (325)
T 3ing_A 73 --SGPEDLMGEAADLLVDCTPASRDG-VREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQ----NSKYIRYEATV 145 (325)
T ss_dssp --CSGGGGTTSCCSEEEECCCCCSSS-HHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHH----HTCCEECGGGS
T ss_pred --CHHHHhcCCCCCEEEECCCCcccc-chHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHH----cCCeEEEEeee
Confidence 22 223 4689999999864211 111222223334454 4444553221 1133222211 13344322221
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHH
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPF 371 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf 371 (561)
+ .+ - -.+..+++++ .|-.+..+.- |.|-...-++++ | ++|.+.+++-.-.+..||.- |=
T Consensus 146 g------~g---i-Pii~~l~~~l--~g~~I~~i~G----i~nGT~nyil~~---m-~~g~~f~~~l~~Aq~~GyaE-~D 204 (325)
T 3ing_A 146 A------GG---V-PLFSVLDYSI--LPSKVKRFRG----IVSSTINYVIRN---M-ANGRSLRDVVDDAIKKGIAE-SN 204 (325)
T ss_dssp S------TT---S-CCHHHHHHTC--TTCCEEEEEE----ECCHHHHHHHHH---H-HTTCCHHHHHHHHHHHTCSC-SS
T ss_pred c------cc---C-HHHHHHHHHh--hCCCeeEEEE----EEEeeeeEEeec---c-cCCCCHHHHHHHHHHcCCCC-CC
Confidence 1 00 0 1134455544 2333333321 333332222222 2 67888888777776666632 22
Q ss_pred HHHHHhchHHHHHHH
Q 008576 372 RLADLVGFGVAIATG 386 (561)
Q Consensus 372 ~~~D~~Gld~~~~~~ 386 (561)
=..|.-|.|...++.
T Consensus 205 P~~Dv~G~D~a~Kl~ 219 (325)
T 3ing_A 205 PQDDLNGLDAARKSV 219 (325)
T ss_dssp THHHHTTHHHHHHHH
T ss_pred cccccCChhHHHHHH
Confidence 257999999987754
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0071 Score=58.90 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=51.6
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||.|. .|..+|..|...|.+|++++.....+. +.+++
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 202 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN 202 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence 6999999996 599999999999999999975443222 23567
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||-|++..--++. ..++++++|+...
T Consensus 203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVg 231 (288)
T 1b0a_A 203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVG 231 (288)
T ss_dssp CSEEEECSCCTTCBCT-------TTSCTTCEEEECC
T ss_pred CCEEEECCCCcCcCCH-------HHcCCCcEEEEcc
Confidence 9999999973321222 2357888776543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.012 Score=57.40 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 73 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELA 73 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence 46777766 99999999999999999999999988766543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.013 Score=57.10 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 72 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA 72 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHH
Confidence 57788876 89999999999999999999999988766543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.016 Score=55.11 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=34.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVA 48 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 46677766 89999999999999999999999988766544
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.014 Score=56.91 Aligned_cols=41 Identities=22% Similarity=0.064 Sum_probs=33.6
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 71 (270)
T 3ftp_A 30 VAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA 71 (270)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4444455 8999999999999999999999999887765543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.028 Score=57.95 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=50.5
Q ss_pred ccceEEEEEcCcc---chHHHHHHHHhCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 008576 145 RRVKKVAILGGGL---MGSGIATALILSN-YPVI--LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (561)
Q Consensus 145 ~~~~kV~VIG~G~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (561)
++..||+|||+|. ||...+..+...+ ++|+ ++|+++++++...+ +.| +. .....
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~----------~~g-~~---------~~~~~ 69 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGE----------QLG-VD---------SERCY 69 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHH----------HTT-CC---------GGGBC
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHH----------HhC-CC---------cceee
Confidence 3446999999999 9999988887765 6766 57999988765332 112 10 01234
Q ss_pred ccccc-c-------CCCCEEEEeccCChh
Q 008576 219 LDYES-F-------KDVDMVIEAIIENVS 239 (561)
Q Consensus 219 ~~~~~-l-------~~aDlVieav~e~~~ 239 (561)
+|+++ + .+.|+|++|+|....
T Consensus 70 ~~~~~ll~~~~~~~~~vD~V~i~tp~~~H 98 (398)
T 3dty_A 70 ADYLSMFEQEARRADGIQAVSIATPNGTH 98 (398)
T ss_dssp SSHHHHHHHHTTCTTCCSEEEEESCGGGH
T ss_pred CCHHHHHhcccccCCCCCEEEECCCcHHH
Confidence 45544 2 359999999997644
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.011 Score=57.67 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~ 62 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALA 62 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45666665 89999999999999999999999998776544
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0087 Score=58.29 Aligned_cols=39 Identities=31% Similarity=0.356 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 10 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (270)
T 1yde_A 10 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL 49 (270)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777766 8999999999999999999999998876553
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.01 Score=58.75 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=33.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~ 68 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ 68 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34555555 899999999999999999999999987766443
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0093 Score=57.23 Aligned_cols=40 Identities=25% Similarity=0.132 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~ 50 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAIS 50 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35555565 88999999999999999999999998776644
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.072 Score=54.64 Aligned_cols=69 Identities=17% Similarity=0.091 Sum_probs=48.7
Q ss_pred eEEEEEcCc-cchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGGG-LMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.||+|||+| .||..++..+... +++|+ ++|++++++++..+. .| +...+++++
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~~el 59 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----------YG-------------IPVFATLAEM 59 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----------HT-------------CCEESSHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----------cC-------------CCeECCHHHH
Confidence 589999999 9999999988875 56654 889999877653311 01 223445544
Q ss_pred c--CCCCEEEEeccCChh
Q 008576 224 F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 224 l--~~aDlVieav~e~~~ 239 (561)
+ .++|+|++|+|....
T Consensus 60 l~~~~vD~V~i~tp~~~H 77 (387)
T 3moi_A 60 MQHVQMDAVYIASPHQFH 77 (387)
T ss_dssp HHHSCCSEEEECSCGGGH
T ss_pred HcCCCCCEEEEcCCcHHH
Confidence 3 369999999996543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.013 Score=56.32 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 54 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAV 54 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56778866 99999999999999999999999988766543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.01 Score=56.86 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 45 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA 45 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777776 8999999999999999999999998876653
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.013 Score=56.81 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=35.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++.+.+++..+.+
T Consensus 21 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 64 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL 64 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 34555565 89999999999999999999999998887765443
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.015 Score=56.82 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 64 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK 64 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45666665 899999999999999999999999987765443
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.012 Score=56.52 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=35.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 52 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ 52 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 46677776 8999999999999999999999999887765543
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.022 Score=56.11 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=35.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+.
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 69 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQ 69 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 56777876 8999999999999999999999999877665443
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.025 Score=57.43 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=30.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.+|.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 589999999999999999999997 799999863
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0084 Score=58.64 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 75 (276)
T 3r1i_A 33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE 75 (276)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45666665 8999999999999999999999998877665443
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0088 Score=56.60 Aligned_cols=39 Identities=33% Similarity=0.278 Sum_probs=33.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL 45 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 35677765 8999999999999999999999998876543
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0096 Score=58.21 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (280)
T 1xkq_A 7 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETR 47 (280)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35666665 89999999999999999999999998776544
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=56.94 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=33.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 15 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 55 (260)
T 2zat_A 15 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTV 55 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45666665 89999999999999999999999998776544
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.051 Score=52.00 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=48.7
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
+-+||+++|.|.||..++.. . ++++ .+|+ ++ .+.+ .+..++|+++
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k-----------------~gel----------gv~a~~d~d~l 57 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RI-----------------SKDI----------PGVVRLDEFQV 57 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SS-----------------CCCC----------SSSEECSSCCC
T ss_pred ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cc-----------------cccc----------CceeeCCHHHH
Confidence 44799999999999999998 4 8876 5666 21 1111 2234566655
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCc
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ 256 (561)
+.++|+||||.+ .+ .+-+.+.+.+..+.
T Consensus 58 la~pD~VVe~A~--~~---av~e~~~~iL~aG~ 85 (253)
T 1j5p_A 58 PSDVSTVVECAS--PE---AVKEYSLQILKNPV 85 (253)
T ss_dssp CTTCCEEEECSC--HH---HHHHHHHHHTTSSS
T ss_pred hhCCCEEEECCC--HH---HHHHHHHHHHHCCC
Confidence 478999999985 22 22233666677766
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0095 Score=57.38 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=33.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 45 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT 45 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777776 8999999999999999999999998876553
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0077 Score=58.27 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=33.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 52 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAV 52 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777766 8999999999999999999999998876543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.011 Score=56.90 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.+++..
T Consensus 9 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~ 49 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIR 49 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45666765 89999999999999999999999998876644
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.012 Score=56.89 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (262)
T 1zem_A 8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAE 48 (262)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777766 89999999999999999999999998776544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.012 Score=57.13 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=51.1
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+++.|||.|. .|..+|..|+..|.+|+++.+....++ +.+++
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~ 204 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR 204 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence 6999999865 799999999999999999875322111 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||.+++...-++. +.++++++|+...
T Consensus 205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvg 233 (286)
T 4a5o_A 205 ADLVVVAAGKPGLVKG-------EWIKEGAIVIDVG 233 (286)
T ss_dssp CSEEEECCCCTTCBCG-------GGSCTTCEEEECC
T ss_pred CCEEEECCCCCCCCCH-------HHcCCCeEEEEec
Confidence 9999999974322222 3467888776543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.014 Score=57.74 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=35.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+.
T Consensus 32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 74 (301)
T 3tjr_A 32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNG 74 (301)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 45777776 8899999999999999999999999887765543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.014 Score=56.62 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=51.0
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 148 KKVAILGGGLM-GSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
+++.|||.|.| |..+|..|... |.+|++++++...+. +.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~ 201 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT 201 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence 69999999976 99999999999 899999875442221 236
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
++||+||-|++..--++. +.++++++|+..
T Consensus 202 ~~ADIVI~Avg~p~~I~~-------~~vk~GavVIDV 231 (281)
T 2c2x_A 202 RQADIVVAAVGVAHLLTA-------DMVRPGAAVIDV 231 (281)
T ss_dssp TTCSEEEECSCCTTCBCG-------GGSCTTCEEEEC
T ss_pred hhCCEEEECCCCCcccCH-------HHcCCCcEEEEc
Confidence 789999999963322322 235778877653
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.016 Score=55.94 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus 10 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (260)
T 2ae2_A 10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLT 51 (260)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777766 899999999999999999999999987765443
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.017 Score=56.21 Aligned_cols=41 Identities=24% Similarity=0.201 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 63 (273)
T 1ae1_A 22 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE 63 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46677766 899999999999999999999999987765443
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=57.29 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=34.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCK 48 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46777776 89999999999999999999999988765543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=57.54 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~ 70 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTA 70 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777766 89999999999999999999999998766544
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.038 Score=54.23 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
|||.|.|+ |.+|+.++..|.++||+|++..|+++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 58999987 99999999999999999999998754
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=57.72 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=33.0
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
+|.|.|+ |.+|.++|..|++.|++|++.+++.+.+++..+
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (272)
T 4dyv_A 30 IAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAA 70 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3444455 899999999999999999999999988776443
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.016 Score=55.14 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=33.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEE-eCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILK-EVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++. +++++.++...
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~ 43 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVA 43 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 46777766 899999999999999999998 89988766543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=57.52 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+
T Consensus 19 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 60 (303)
T 1yxm_A 19 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAD 60 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57778876 899999999999999999999999887765443
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.025 Score=58.57 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=48.4
Q ss_pred eEEEEEcCccchHHHHHHHHhC---------CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 148 KKVAILGGGLMGSGIATALILS---------NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~---------G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
-||+|||+|.||...+..+.+. +.+ |.++|++++++++..++ ++....
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~----------------------~~~~~~ 84 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAK----------------------LGAEKA 84 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHH----------------------cCCCeE
Confidence 4899999999999888887654 334 45889999987764321 111123
Q ss_pred cccccc-c--CCCCEEEEeccCChh
Q 008576 218 VLDYES-F--KDVDMVIEAIIENVS 239 (561)
Q Consensus 218 ~~~~~~-l--~~aDlVieav~e~~~ 239 (561)
.+|+++ + .+.|+|++|+|....
T Consensus 85 y~d~~~ll~~~~vD~V~I~tp~~~H 109 (412)
T 4gqa_A 85 YGDWRELVNDPQVDVVDITSPNHLH 109 (412)
T ss_dssp ESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred ECCHHHHhcCCCCCEEEECCCcHHH
Confidence 455544 3 468999999996654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=57.28 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=34.5
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 28 ~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l 70 (271)
T 4ibo_A 28 TALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEF 70 (271)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4555555 89999999999999999999999998877655443
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=56.60 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+.
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 72 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVERE 72 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 45666665 8999999999999999999999999887765433
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.018 Score=54.02 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=25.5
Q ss_pred eEEEEEcCccchHHHHHH--HHhCCCcE-EEEeCCHHHH
Q 008576 148 KKVAILGGGLMGSGIATA--LILSNYPV-ILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~--la~~G~~V-~l~d~~~~~~ 183 (561)
.+|+|||+|.+|..++.. +...|++| .++|.|++..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~ 124 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKI 124 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTT
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHH
Confidence 589999999999999994 33457765 5789998753
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=94.98 E-value=0.018 Score=56.41 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 29 k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 69 (286)
T 1xu9_A 29 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV 69 (286)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46777777 89999999999999999999999998776544
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.014 Score=57.10 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=34.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 25 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 67 (279)
T 3sju_A 25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG 67 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 35566665 8999999999999999999999999887765543
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.11 Score=52.31 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=57.6
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHH-Hhhhcccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKF-EKTISLLTGVLDYE- 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~-~~~~~~i~~~~~~~- 222 (561)
.||+|+|+|.+|..+++.+..+ +++|+ +.|.+++......+. +...-.|.. ....+ .-.-+.+....+.+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~ 77 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTILD 77 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchHH
Confidence 5999999999999999998876 56754 556664443322210 000001111 11111 10111222222332
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
.+.++|+|++|.+..... +... ..++..++.++++.+.
T Consensus 78 ~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp TGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTTS
T ss_pred hccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCCc
Confidence 346899999999854321 1111 3566677766655443
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=55.88 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 12 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (255)
T 1fmc_A 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV 52 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 56777776 99999999999999999999999988766543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.01 Score=58.05 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=32.7
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+|.|.|+ |.+|.++|..|++.|++|++.|++++.++...
T Consensus 31 ~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 70 (277)
T 3gvc_A 31 VAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAA 70 (277)
T ss_dssp EEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4555555 89999999999999999999999998876644
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.018 Score=54.96 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFEN 47 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45666665 899999999999999999999999988766443
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.037 Score=55.67 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=31.3
Q ss_pred ccceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 145 RRVKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 145 ~~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+..++|.|+|+ |.+|..++..|++.|++|++.+|++
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 34468999998 9999999999999999999999976
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.017 Score=56.79 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=31.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+++|.|+|+ |.+|..++..|++.|++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 468999997 9999999999999999999999986
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.018 Score=54.48 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=30.1
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
.|+|||+|.-|...|..|+++|++|+++|.++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 59999999999999999999999999999764
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.015 Score=55.42 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=34.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 43 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETA 43 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777776 89999999999999999999999988766533
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.036 Score=56.33 Aligned_cols=69 Identities=12% Similarity=0.231 Sum_probs=46.7
Q ss_pred cceEEEEEcCccchHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
++.||+|||+|.||.. .+..+... +++|+ ++|++++++.+ ....+...++++
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~~ 58 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRSFK 58 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESCSH
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECCHH
Confidence 4569999999999997 66666665 77764 88998764211 011233455665
Q ss_pred c-cC--CCCEEEEeccCChh
Q 008576 223 S-FK--DVDMVIEAIIENVS 239 (561)
Q Consensus 223 ~-l~--~aDlVieav~e~~~ 239 (561)
+ +. ++|+|++|+|....
T Consensus 59 ~ll~~~~vD~V~i~tp~~~H 78 (362)
T 3fhl_A 59 ELTEDPEIDLIVVNTPDNTH 78 (362)
T ss_dssp HHHTCTTCCEEEECSCGGGH
T ss_pred HHhcCCCCCEEEEeCChHHH
Confidence 4 33 59999999996544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.15 Score=49.99 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=61.7
Q ss_pred eEEEEEcCccchHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-ccccc--
Q 008576 148 KKVAILGGGLMGSGIATALIL-SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES-- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 223 (561)
.+|..||+|..|.+... +++ .|.+|+.+|++++.++.+++.+.+ .|. .++++. .|...
T Consensus 124 ~rVLDIGcG~G~~ta~~-lA~~~ga~V~gIDis~~~l~~Ar~~~~~-------~gl----------~~v~~v~gDa~~l~ 185 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGIL-LSHVYGMRVNVVEIEPDIAELSRKVIEG-------LGV----------DGVNVITGDETVID 185 (298)
T ss_dssp CEEEEECCCSSCHHHHH-HHHTTCCEEEEEESSHHHHHHHHHHHHH-------HTC----------CSEEEEESCGGGGG
T ss_pred CEEEEECCCccHHHHHH-HHHccCCEEEEEECCHHHHHHHHHHHHh-------cCC----------CCeEEEECchhhCC
Confidence 59999999986544222 333 588999999999999987754322 121 122221 11111
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
-...|+|+.+.. ..-+..+++++...++|+..++..
T Consensus 186 d~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 186 GLEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp GCCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 246899997654 345678999999999988766543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=60.14 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=31.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+||+|||+|.-|..+|..|+++|++|+++|++++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4899999999999999999999999999998653
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.015 Score=56.03 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~ 42 (256)
T 2d1y_A 7 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG 42 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH
Confidence 46777776 899999999999999999999999876
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=56.63 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=33.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF-LEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~ 188 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++. ++...+
T Consensus 5 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 47 (260)
T 1x1t_A 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRA 47 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHH
Confidence 35666665 899999999999999999999999876 655443
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=56.69 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=33.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 7 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (253)
T 1hxh_A 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQL 46 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45666666 8999999999999999999999998876653
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.094 Score=50.69 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhcCCceEEEcc-cccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH-h-cCCCcc----HHHHHHH
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-K-FGMPMG----PFRLADL 376 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~-~-~G~~~G----Pf~~~D~ 376 (561)
+.......+.+...++..-|.|+. +||++-..+...+..... -+.+.+.+.....+. . -..|+| |=++++.
T Consensus 157 Kaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~~ 234 (261)
T 4h15_A 157 KAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLA--KQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVANL 234 (261)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHH--HHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHH--HhhccchhhHHHHHHHHhcCCCCCCCcCHHHHHHH
Confidence 456667778888889988888885 799997766544432211 123456666666554 2 345655 5555444
Q ss_pred h
Q 008576 377 V 377 (561)
Q Consensus 377 ~ 377 (561)
+
T Consensus 235 v 235 (261)
T 4h15_A 235 I 235 (261)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=56.50 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
+++.|.|+ |.+|.++|..|++.|++|++.|++.+.++...+.
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 55 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA 55 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 35556665 8999999999999999999999999887765543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.023 Score=56.38 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=31.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+++|.|+|+ |.+|..++..|++.|++|++.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 568999996 9999999999999999999999985
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.04 Score=56.35 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=44.6
Q ss_pred EEEEEcCccchHHHHHHHHh--------CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 149 KVAILGGGLMGSGIATALIL--------SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~--------~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
||+|||+|.||..-+..+.. .+.+ |.++|++++++++..++ ++.-...+
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~ 84 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------------------FGFEKATA 84 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------------------HTCSEEES
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCeecC
Confidence 89999999999876665533 2445 55889999887654321 11112345
Q ss_pred cccc-c--CCCCEEEEeccCChhh
Q 008576 220 DYES-F--KDVDMVIEAIIENVSL 240 (561)
Q Consensus 220 ~~~~-l--~~aDlVieav~e~~~~ 240 (561)
|+++ + .+.|+|+.|+|.....
T Consensus 85 d~~ell~~~~iDaV~IatP~~~H~ 108 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTPNQFHA 108 (393)
T ss_dssp CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred CHHHHhcCCCCcEEEECCChHHHH
Confidence 6654 3 4689999999976543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.032 Score=55.30 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=31.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
++|.|+|+ |.+|..++..|++.|++|++.+|+++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence 48999996 99999999999999999999999874
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=56.16 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.5
Q ss_pred ceEEEEEcC-ccchHHHHHHHHh-CCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALIL-SNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~ 187 (561)
.++|.|.|+ |.+|..++..|++ .|++|++.+++.+.++...
T Consensus 4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~ 46 (276)
T 1wma_A 4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAV 46 (276)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHH
Confidence 356777766 9999999999999 9999999999988766544
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.013 Score=56.59 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=31.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE 184 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.+.
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~ 65 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHASV 65 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 35666665 88999999999999999999999987653
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.018 Score=55.00 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=33.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeC-CHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV-NEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.++ +++.++...
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 46 (246)
T 2uvd_A 5 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVV 46 (246)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 45666665 89999999999999999999999 887766543
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.013 Score=57.01 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (278)
T 1spx_A 7 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETR 47 (278)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45666665 89999999999999999999999998776544
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.039 Score=58.42 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=50.9
Q ss_pred ccceEEEEEcC----ccchHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 145 RRVKKVAILGG----GLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 145 ~~~~kV~VIG~----G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
++..||+|||+ |.||...+..|... +++| .++|+++++++...+. .|. . ....
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~-~---------~~~~ 96 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL-K---------HATG 96 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC-T---------TCEE
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC-C---------ccee
Confidence 34468999999 99999999999885 6775 5899999877653311 111 0 1123
Q ss_pred cccccc-c--CCCCEEEEeccCCh
Q 008576 218 VLDYES-F--KDVDMVIEAIIENV 238 (561)
Q Consensus 218 ~~~~~~-l--~~aDlVieav~e~~ 238 (561)
.+++++ + .++|+|++|+|...
T Consensus 97 ~~d~~ell~~~~vD~V~I~tp~~~ 120 (479)
T 2nvw_A 97 FDSLESFAQYKDIDMIVVSVKVPE 120 (479)
T ss_dssp ESCHHHHHHCTTCSEEEECSCHHH
T ss_pred eCCHHHHhcCCCCCEEEEcCCcHH
Confidence 455544 3 47999999999543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.018 Score=56.32 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|.++|..|++.|++|++.|++++.+++..
T Consensus 28 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 68 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVA 68 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45666665 89999999999999999999999998776544
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.083 Score=51.34 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=30.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
++|.|||+|..|..-+..|...|++|++++.+.
T Consensus 14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 689999999999999999999999999999754
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.027 Score=56.59 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=31.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
.++|.|.|+ |.+|..++..|++.|++|++.+++..
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 468999986 99999999999999999999999654
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.019 Score=55.86 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeC-CHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV-NEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|.++|..|++.|++|++.++ +++.++...+
T Consensus 12 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 54 (276)
T 1mxh_A 12 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVA 54 (276)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHH
Confidence 35556655 89999999999999999999999 8887765443
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.0083 Score=59.28 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=33.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+
T Consensus 42 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 83 (293)
T 3rih_A 42 RSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTA 83 (293)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 35555565 899999999999999999999999887766443
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.011 Score=57.21 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 7 k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 46 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA 46 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777766 8999999999999999999999998876653
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.027 Score=55.12 Aligned_cols=40 Identities=25% Similarity=0.190 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 45 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 85 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVV 85 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 56777866 89999999999999999999999988766543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.12 Score=51.24 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=34.8
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
-++|.|.|+ |.+|..++..|++.|++|++.+++.+..+.
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 50 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN 50 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHH
Confidence 468999988 999999999999999999999999876544
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.013 Score=56.43 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=29.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPA 48 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 35666666 89999999999999999999999988766543
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.028 Score=55.03 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=27.4
Q ss_pred ceEEEEEc-CccchHHHHHHHHhC-CCcEE-EEeCCH
Q 008576 147 VKKVAILG-GGLMGSGIATALILS-NYPVI-LKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG-~G~mG~~iA~~la~~-G~~V~-l~d~~~ 180 (561)
+.||+|+| .|.||..++..+... +++++ ++|++.
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~ 57 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKG 57 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 45999999 899999999988765 77754 568764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.012 Score=57.16 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=33.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|.++|..|++.|++|++.|++++.++...
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 52 (271)
T 3tzq_B 12 KVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAA 52 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 45666666 89999999999999999999999988776544
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.16 Score=48.99 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=33.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++.+.+++..
T Consensus 28 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 68 (266)
T 3grp_A 28 RKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIA 68 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35555555 89999999999999999999999998876543
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.036 Score=56.58 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=47.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--------Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSN--------YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G--------~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (561)
-||+|||+|.||...+..+.... .+ |.++|+++++++...++ ++.-...
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------------------~g~~~~~ 64 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------------------LGWSTTE 64 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------------------cCCCccc
Confidence 38999999999998877765531 24 45889999887664321 1111234
Q ss_pred ccccc-c--CCCCEEEEeccCChhh
Q 008576 219 LDYES-F--KDVDMVIEAIIENVSL 240 (561)
Q Consensus 219 ~~~~~-l--~~aDlVieav~e~~~~ 240 (561)
+|+++ + .+.|+|++|+|.....
T Consensus 65 ~d~~~ll~~~~iDaV~I~tP~~~H~ 89 (390)
T 4h3v_A 65 TDWRTLLERDDVQLVDVCTPGDSHA 89 (390)
T ss_dssp SCHHHHTTCTTCSEEEECSCGGGHH
T ss_pred CCHHHHhcCCCCCEEEEeCChHHHH
Confidence 55644 3 4689999999976543
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.0092 Score=57.45 Aligned_cols=39 Identities=15% Similarity=0.012 Sum_probs=32.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 41 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL 41 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45666665 8999999999999999999999998766543
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.028 Score=57.12 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=30.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.||.|+|+|.+|.++|+.+...|. +|+++|++
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 599999999999999999999998 79999998
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.014 Score=55.66 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 7 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 46 (251)
T 1zk4_A 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKA 46 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777766 8999999999999999999999998776543
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.023 Score=55.61 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=32.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeC-CHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV-NEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~ 187 (561)
++|.|.|+ |.+|.++|..|++.|++|++.++ +.+.++...
T Consensus 26 k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 67 (281)
T 3v2h_A 26 KTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVT 67 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHH
Confidence 45666665 89999999999999999999999 666555433
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.013 Score=56.54 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.++..
T Consensus 13 k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 52 (265)
T 2o23_A 13 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ 52 (265)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHH
Confidence 56777766 8999999999999999999999998766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 561 | ||||
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 5e-37 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 1e-33 | |
| d1wdka2 | 95 | a.100.1.3 (A:621-715) Fatty oxidation complex alph | 2e-21 | |
| d1wdka2 | 95 | a.100.1.3 (A:621-715) Fatty oxidation complex alph | 0.001 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 1e-19 | |
| d1wdka1 | 124 | a.100.1.3 (A:497-620) Fatty oxidation complex alph | 2e-19 | |
| d1wdka1 | 124 | a.100.1.3 (A:497-620) Fatty oxidation complex alph | 0.004 | |
| d1f0ya1 | 99 | a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl | 7e-14 | |
| d1f0ya1 | 99 | a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl | 9e-04 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 5e-12 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 4e-05 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 0.001 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 0.003 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 0.003 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 0.003 |
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 133 bits (335), Expect = 5e-37
Identities = 70/184 (38%), Positives = 112/184 (60%)
Query: 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT 204
+ VK+ A+LG G+MG GIA P+++K++NE +E G+ L RV KG+MT
Sbjct: 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61
Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
K + ++ + L Y F +VD+V+EA++EN +KQ + A++E + ILASNTST
Sbjct: 62 PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121
Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
I ++L+ + + VG HFF+P H+MPL+E++R ++S + + KK+ K PIV
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181
Query: 325 VGNC 328
V +C
Sbjct: 182 VNDC 185
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (312), Expect = 1e-33
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 6/188 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---- 202
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63
Query: 203 -MTQEKFEKTISLLTGVLDYES-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 64 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183
Query: 321 TPIVVGNC 328
P+ +
Sbjct: 184 HPVSCKDT 191
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 86.4 bits (214), Expect = 2e-21
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 457 LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSK 516
++++DI+ + P+ E R +GI AA+ D+ V G+GFP +RGG + + DS+G
Sbjct: 2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVA 61
Query: 517 YIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548
+ ++++ G + P A L E A G +
Sbjct: 62 EFVALADQYAE-LGALYHPTAKLREMAKNGQS 92
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 36.3 bits (84), Expect = 0.001
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 333 VNRMFFPYTQAAFLLVERGTDLYLIDR---AITKFGMPM---GPFRLADLVGFGVAIATG 386
+N M P +E G + + G P+ G R D +G +A
Sbjct: 8 INWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVAL- 66
Query: 387 MQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFY 421
+ + ++E + G + F+
Sbjct: 67 ADQYAELGALYHPT---AKLREMAKNG----QSFF 94
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 87.8 bits (216), Expect = 1e-19
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 3/142 (2%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKIE 57
+ + K + E+A + VDAVV ++L + A + + A + K+
Sbjct: 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLN 226
Query: 58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
+ + A + PN P+ I ++ G L+ EA F KL ++
Sbjct: 227 AIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSA 286
Query: 118 CKSLVHIFFAQRGTSKVPGVTD 139
L+ +F + K V D
Sbjct: 287 SNCLIGLFLNDQELKKKAKVYD 308
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 81.8 bits (201), Expect = 2e-19
Identities = 41/114 (35%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQF 389
GF VNR+ FPY LV G D ID+ + KFG PMGP L D+VG
Sbjct: 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60
Query: 390 IENFPERTYKS--MIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEK 441
E FP+R I + E KR G+ KGFY Y+ +K V + +
Sbjct: 61 AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLE 114
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 35.6 bits (81), Expect = 0.004
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSR 521
+V + FP ++ + G+ D M + G + D +G +
Sbjct: 3 LVNRVLFPYFGGFAKLVSAGVDFVRID------KVMEKFGWPMGPAYLMDVVGIDTGHHG 56
Query: 522 LEEWSSLYGEF--FKPCAFLAERAGKGATLVRNLKLFFSY 559
+ + + + + + +N K F++Y
Sbjct: 57 RDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAY 96
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (158), Expect = 7e-14
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFG--MPMGPFRLADLVGFGVAIATGM 387
GF VNR+ PY A L ERG K G PMGPF L D VG
Sbjct: 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60
Query: 388 QFIENFPE--RTYKSMIIPIMQEDKRAGETTRKGFYLY 423
+ E E S + + + + G+ T +GFY Y
Sbjct: 61 GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 98
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 9e-04
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSR 521
IV + P + EA R++ G D+D A +G G+P G D +G
Sbjct: 3 IVNRLLVPYLMEAIRLYERGD-ASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFI 58
Query: 522 LEEWSSLYGE--FFKPCAFLAERAGKGATLVRNLKLFFSY 559
++ W + E +P L + + + + F+ Y
Sbjct: 59 VDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 98
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 63.8 bits (155), Expect = 5e-12
Identities = 30/227 (13%), Positives = 62/227 (27%), Gaps = 33/227 (14%)
Query: 125 FFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL--------SNYPVILK 176
F +K G ++ L G L+ ++ V++
Sbjct: 22 FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--------------- 221
E + K + K ++ + K ++ +
Sbjct: 78 EFDPKEVMEAHLSGNPE-SIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDR 136
Query: 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYSKD- 278
E+ + D+VI + + + I P I+ A T I + +D
Sbjct: 137 EAVEGADIVITWL-PKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195
Query: 279 RIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
I H + + I S + + L +IGK + +
Sbjct: 196 NITSYHPGCVPEMKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKM 241
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 42.6 bits (99), Expect = 4e-05
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 14/145 (9%)
Query: 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK 207
K A+LG G G A L L V+ +++ + ++ +Q R
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIK--------EIQDRGAIIAEGPGL 53
Query: 208 FEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL----ASNTS 263
L + KD D+++ + I A++ Y ++ +
Sbjct: 54 AGTAHPDLLTSDIGLAVKDADVILIVVPAIH--HASIAANIASYISEGQLIILNPGATGG 111
Query: 264 TIDLNLIGERTYSKDRIVGAHFFSP 288
++ I + + +G
Sbjct: 112 ALEFRKILRENGAPEVTIGETSSML 136
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 37.4 bits (86), Expect = 0.001
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 28/150 (18%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
K+ I+G G +GS A AL++ + + ++ V + F
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLID----------VDKKRAEGDALDLIHGTPF 51
Query: 209 EKTISLLTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCP- 253
+ ++ G DY K D+VI A N + ++I ++ KY P
Sbjct: 52 TRRANIYAG--DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPD 109
Query: 254 PHCILASNTSTIDLNLIGERT-YSKDRIVG 282
I+ +N + + + ++ G
Sbjct: 110 SIVIVVTNPVDVLTYFFLKESGMDPRKVFG 139
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 36.2 bits (83), Expect = 0.003
Identities = 17/142 (11%), Positives = 49/142 (34%), Gaps = 9/142 (6%)
Query: 148 KKVAILGGGLMGSGIATALILSNYP--VILKEVNEKFLEAG---IGRVRANLQSRVKKGK 202
+V ++G G +G+ AL+ ++L + NE + V
Sbjct: 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCP-PHCILASN 261
+ ++ + + + + + +N+++ + I + ++A+N
Sbjct: 67 GDYDDCRDADLVVICAGANQKPGETRLDL--VDKNIAIFRSIVESVMASGFQGLFLVATN 124
Query: 262 TSTIDLNLIGERT-YSKDRIVG 282
I + + +R++G
Sbjct: 125 PVDILTYATWKFSGLPHERVIG 146
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 36.2 bits (83), Expect = 0.003
Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 9/144 (6%)
Query: 148 KKVAILGGGLMGSGIATALILSNYP--VILKEVNEKFLEAG---IGRVRANLQSRVKKGK 202
+K+ I+G G +G+ +A LI + + NE ++A ANL++
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61
Query: 203 MTQEKFEKT--ISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL-A 259
+ G + + + S+ Q + +L++ ++
Sbjct: 62 NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121
Query: 260 SNTSTIDLNLIGERT-YSKDRIVG 282
SN + L T + +++G
Sbjct: 122 SNPVDVITALFQHVTGFPAHKVIG 145
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 36.3 bits (82), Expect = 0.003
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182
K+ ++G GL+G+ +A L + +I +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQST 35
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 561 | |||
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 100.0 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 100.0 | |
| d1wdka2 | 95 | Fatty oxidation complex alpha subunit, C-terminal | 99.94 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 99.93 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.93 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.92 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 99.86 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.77 | |
| d1wdka2 | 95 | Fatty oxidation complex alpha subunit, C-terminal | 99.74 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.69 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.64 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 99.63 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.59 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.55 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.55 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.54 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.49 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 99.42 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 99.39 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 99.37 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 99.32 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 99.32 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.26 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.22 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 99.21 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 99.2 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.18 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.17 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.15 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.12 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.11 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.1 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.04 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.03 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 98.96 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.91 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.91 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.86 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.84 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.82 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.75 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.75 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 98.73 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.71 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.7 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.68 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.66 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.57 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.57 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.57 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.53 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 98.4 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.38 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.3 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.28 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 98.25 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.22 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.21 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.09 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 98.09 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.05 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.98 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.94 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.94 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.91 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.83 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.82 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.72 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.71 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.65 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.59 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.59 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.57 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 97.56 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.55 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 97.51 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.42 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.39 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.39 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 97.36 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 97.3 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.28 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.24 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 97.21 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.17 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 97.16 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.14 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.13 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.12 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 97.11 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 97.1 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.1 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.09 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.08 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 97.05 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 96.99 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.92 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.91 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 96.91 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.88 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 96.83 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.83 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.8 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 96.8 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 96.78 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.75 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.75 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.66 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.65 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.64 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 96.62 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 96.58 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.58 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.58 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.54 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.45 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.44 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 96.44 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.43 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.42 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.38 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 96.35 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.34 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 96.26 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.23 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 96.21 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.13 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 96.12 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 96.11 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.1 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.09 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 96.07 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 96.06 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.05 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 96.02 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.01 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.01 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.0 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.99 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 95.95 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.92 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.92 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.91 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.89 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.88 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 95.88 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.86 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.84 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.74 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.65 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.64 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.6 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.55 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.55 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.54 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.53 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.51 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.51 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 95.51 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.49 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.44 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 95.43 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.39 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.38 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.37 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.35 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.33 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.3 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.24 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.21 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 95.19 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 95.19 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 95.15 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.04 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 95.02 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.01 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.96 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.94 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.89 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.85 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.81 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.74 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.72 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.69 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.67 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.62 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.56 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.55 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.52 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.44 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.33 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.31 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.31 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 94.27 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.26 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 94.22 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 94.18 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.16 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.16 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.13 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.96 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.92 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 93.88 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 93.87 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.85 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 93.73 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 93.71 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.63 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.59 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.57 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 93.56 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.49 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 93.48 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 93.45 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.45 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.37 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.35 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 93.3 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.17 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 93.08 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 92.93 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.8 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 92.79 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.61 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.61 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 92.55 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.53 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 92.48 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.46 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.37 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 92.36 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.28 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.17 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.13 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.1 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 92.1 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 91.84 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 91.65 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 91.65 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 91.59 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 91.58 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 91.57 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 91.49 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.27 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.11 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 90.96 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 90.88 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 90.84 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.78 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 90.75 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 90.58 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 90.39 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.29 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.23 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 90.15 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 90.09 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.07 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 90.05 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.81 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 89.68 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 89.4 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.38 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 89.29 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 89.28 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 89.25 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 89.05 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 88.98 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 88.93 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 88.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 88.57 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 88.53 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 88.4 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 88.39 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 88.33 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 88.31 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 88.11 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 87.99 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.98 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 87.91 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.91 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.84 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 87.46 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 87.44 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 87.43 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 86.93 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 86.91 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 86.69 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 86.62 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 86.6 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 86.25 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 86.16 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 86.12 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 86.11 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 85.97 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 85.83 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.63 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 85.62 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 85.57 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 85.45 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 85.24 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 85.18 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 84.79 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 84.7 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 84.67 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 84.62 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.41 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 84.36 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 84.3 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 84.24 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 84.2 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.92 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 83.91 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 83.75 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 83.69 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 83.59 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 83.43 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 83.01 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 82.9 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 82.64 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 82.29 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 82.22 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 82.2 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 82.13 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 81.89 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 81.87 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 81.42 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 81.33 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 81.26 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 81.07 |
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=2.6e-40 Score=307.84 Aligned_cols=185 Identities=38% Similarity=0.674 Sum_probs=180.2
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
+.|+||+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+...+..+.+++...+..++++..+++++++
T Consensus 2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (186)
T d1wdka3 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF 81 (186)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
.+||+||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|+
T Consensus 82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~ 161 (186)
T d1wdka3 82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS 161 (186)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccc
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVGNCT 329 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (561)
+++++.+..+++.+||.|++++|+|
T Consensus 162 ~~~~~~~~~~~~~lgk~pv~v~d~P 186 (186)
T d1wdka3 162 DLAVATTVAYAKKMGKNPIVVNDCP 186 (186)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccC
Confidence 9999999999999999999999876
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-39 Score=304.59 Aligned_cols=185 Identities=35% Similarity=0.560 Sum_probs=174.0
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHhhhccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-----QEKFEKTISLLTGVL 219 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-----~~~~~~~~~~i~~~~ 219 (561)
+.|+||+|||+|.||++||..++.+|++|++||++++.++++.+++++.+...++++... ....+..++++..++
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 81 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 81 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence 458999999999999999999999999999999999999999999999999999988764 334556678898888
Q ss_pred cc-cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEE
Q 008576 220 DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 298 (561)
Q Consensus 220 ~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv 298 (561)
++ +.+++||+||||+||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||+
T Consensus 82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv 161 (192)
T d1f0ya2 82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI 161 (192)
T ss_dssp CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence 87 45999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEcccc
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (561)
+++.|++++++.+..|++.+||.|++++|.|
T Consensus 162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P 192 (192)
T d1f0ya2 162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP 192 (192)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence 9999999999999999999999999999876
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.94 E-value=5.4e-27 Score=190.74 Aligned_cols=93 Identities=32% Similarity=0.665 Sum_probs=87.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCcc
Q 008576 457 LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPC 536 (561)
Q Consensus 457 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~ 536 (561)
+++++|+||++.+++|||++|++|||+.+++|||.++++|+|||+|+||||+|+|.+|+++++++++.|+ ++|++|+|+
T Consensus 2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~ 80 (95)
T d1wdka2 2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPT 80 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCC
Confidence 5789999999999999999999999998999999999999999999999999999999999999999885 599999999
Q ss_pred HHHHHHHHcCCCcccCCcccc
Q 008576 537 AFLAERAGKGATLVRNLKLFF 557 (561)
Q Consensus 537 ~~l~~~~~~g~~g~~~g~Gfy 557 (561)
++|++|+++| +|||
T Consensus 81 ~~L~~~~~~g-------~~Fy 94 (95)
T d1wdka2 81 AKLREMAKNG-------QSFF 94 (95)
T ss_dssp HHHHHHHHTT-------CCSC
T ss_pred HHHHHHHHhC-------cCCC
Confidence 9999998665 5888
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.93 E-value=7.9e-27 Score=200.37 Aligned_cols=109 Identities=39% Similarity=0.643 Sum_probs=94.2
Q ss_pred cchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC--CcccchHHHHH
Q 008576 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER--TYKSMIIPIMQ 407 (561)
Q Consensus 330 G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v 407 (561)
|||+||++.++++||++++++|++|++||.+++++|||+|||+++|.+|||+++++++.+++.++++ ..+++++++|+
T Consensus 1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv 80 (124)
T d1wdka1 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY 80 (124)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999888764 34678999999
Q ss_pred HCCcCccccCceeeeccCCCC----CCCChhHHHH
Q 008576 408 EDKRAGETTRKGFYLYDERRK----ASPDPEVKKF 438 (561)
Q Consensus 408 ~~G~~G~k~g~GfY~y~~~~~----~~~~~~~~~~ 438 (561)
++|++|+|||+|||+|+++++ +..|+++.++
T Consensus 81 ~~g~lG~Ktg~GFY~y~~~~~~~~~~~~d~~~~~~ 115 (124)
T d1wdka1 81 EAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEV 115 (124)
T ss_dssp HTTCCBTTTTBSSSEEC-------CEECCTHHHHH
T ss_pred HcCCccccCCcEeeEcCCCCCCCCCCCCCHHHHHH
Confidence 999999999999999986543 2345555443
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.4e-26 Score=191.71 Aligned_cols=95 Identities=36% Similarity=0.535 Sum_probs=89.4
Q ss_pred cchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC--CcccchHHH
Q 008576 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER--TYKSMIIPI 405 (561)
Q Consensus 330 G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~ 405 (561)
|||+||++.++++||++++++|+ +|++||.+++ ++|+|+|||+++|.+|+|++.++++++.+.++++ +.|++++++
T Consensus 1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~ 80 (99)
T d1f0ya1 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK 80 (99)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence 89999999999999999999997 9999999998 8999999999999999999999999998887653 457889999
Q ss_pred HHHCCcCccccCceeeecc
Q 008576 406 MQEDKRAGETTRKGFYLYD 424 (561)
Q Consensus 406 ~v~~G~~G~k~g~GfY~y~ 424 (561)
|+++|++|+|||+|||+|+
T Consensus 81 mv~~g~lG~ksg~GfY~Y~ 99 (99)
T d1f0ya1 81 LVAENKFGKKTGEGFYKYK 99 (99)
T ss_dssp HHHTTCCBTTTTBSSSBCC
T ss_pred HHHcCCCcccCCCcccccC
Confidence 9999999999999999995
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.7e-25 Score=183.86 Aligned_cols=96 Identities=24% Similarity=0.388 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC--CCCccHH
Q 008576 461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE--FFKPCAF 538 (561)
Q Consensus 461 ~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~ 538 (561)
+|+||++.+++|||++|++||++ +|++||.+++.++|||+ |||+++|.+|+|+++++++.|.+.+++ ++.|+++
T Consensus 2 Fi~NRil~~~~~ea~~ll~eG~a-~~~~iD~~~~~~~G~p~---Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~ 77 (99)
T d1f0ya1 2 FIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 77 (99)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHH
T ss_pred eehHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcccCCCC---chHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHH
Confidence 58999999999999999999998 89999999999999999 999999999999999999999887764 7899999
Q ss_pred HHHHHHcCCCcccCCccccccC
Q 008576 539 LAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 539 l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
|++|+++|++|.|||+|||+|+
T Consensus 78 l~~mv~~g~lG~ksg~GfY~Y~ 99 (99)
T d1f0ya1 78 LNKLVAENKFGKKTGEGFYKYK 99 (99)
T ss_dssp HHHHHHTTCCBTTTTBSSSBCC
T ss_pred HHHHHHcCCCcccCCCcccccC
Confidence 9999999999999999999995
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.86 E-value=2.4e-22 Score=172.13 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC--CCCccHH
Q 008576 461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE--FFKPCAF 538 (561)
Q Consensus 461 ~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~ 538 (561)
||+||++.+++|||++++++|+. |++||.++. ++|||+ |||+++|.+|+|+++++++.+.+.+++ .+.|+++
T Consensus 2 Fi~NRi~~~~~~ea~~ll~eG~~--~~~ID~a~~-~~G~p~---Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~ 75 (124)
T d1wdka1 2 FLVNRVLFPYFGGFAKLVSAGVD--FVRIDKVME-KFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSA 75 (124)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCH
T ss_pred chHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHh-hccCCC---CHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchH
Confidence 68999999999999999999974 999999985 799999 999999999999999999999887765 5678899
Q ss_pred HHHHHHcCCCcccCCccccccC
Q 008576 539 LAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 539 l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
|++|+++|++|.|||+|||+|+
T Consensus 76 l~~mv~~g~lG~Ktg~GFY~y~ 97 (124)
T d1wdka1 76 IDALYEAKRLGQKNGKGFYAYE 97 (124)
T ss_dssp HHHHHHTTCCBTTTTBSSSEEC
T ss_pred HHHHHHcCCccccCCcEeeEcC
Confidence 9999999999999999999996
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.77 E-value=7.6e-18 Score=152.30 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=118.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||++||..|.++|++|++||++++.++++. +.+.++ ...++.+.+++|
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~-----------~~~~~~-----------~~~~~~~~~~~~ 58 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLVD-----------EAGQDLSLLQTA 58 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGGTTC
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHH-----------Hhhccc-----------eeeeeccccccc
Confidence 5899999999999999999999999999999998877654 333321 234556789999
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC------------CCCeE
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lv 295 (561)
|+||.|+| +....++++++.+.++++++|++.+|. .............++++.|++.++. ....+
T Consensus 59 DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~ 135 (165)
T d2f1ka2 59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135 (165)
T ss_dssp SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred ccccccCc--Hhhhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence 99999998 567888999999999999988765544 3222222222235789999976442 13456
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEE
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v 325 (561)
.+++...++++.++.+.++++.+|.+++.+
T Consensus 136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165 (165)
T ss_dssp EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence 688888899999999999999999987754
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.74 E-value=2.8e-18 Score=138.82 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=77.5
Q ss_pred cchhhhHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHHHHhchHHHHHHHhhhHhhCCCCCcccchH
Q 008576 330 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMII 403 (561)
Q Consensus 330 G~i~nrl~~~~~~ea~~l~~~G~--~~~~ID~a~~-~~G~~~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l 403 (561)
..|+||++.+++|||++++++|+ +++|||.++. ++|||+ |||+++|.+|+|+++++++.+ .++++++.|+++|
T Consensus 5 ~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l-~~~g~r~~p~~~L 83 (95)
T d1wdka2 5 EDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAKL 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHH-HhhCCCCCCCHHH
Confidence 34899999999999999999996 8999999999 999999 999999999999999999987 4688888899999
Q ss_pred HHHHHCCcCccccCceee
Q 008576 404 PIMQEDKRAGETTRKGFY 421 (561)
Q Consensus 404 ~~~v~~G~~G~k~g~GfY 421 (561)
++|+++| +|||
T Consensus 84 ~~~~~~g-------~~Fy 94 (95)
T d1wdka2 84 REMAKNG-------QSFF 94 (95)
T ss_dssp HHHHHTT-------CCSC
T ss_pred HHHHHhC-------cCCC
Confidence 9999764 8999
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.69 E-value=3.7e-16 Score=141.76 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=116.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc--c
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--E 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 222 (561)
|+||+|||+|.||++||..|.++|+ +|++||++++.++.+. +.+.++ ...++. .
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-----------~~~~~~-----------~~~~~~~~~ 58 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAKV 58 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGG
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-----------Hhhcch-----------hhhhhhhhh
Confidence 5789999999999999999999996 6889999999887754 333322 112222 2
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCC----------
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH---------- 290 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~---------- 290 (561)
...++|+||.|+| ++...+++.++.++++++++|++.+|+.. ...+...+ +.+|++.||+....
T Consensus 59 ~~~~~dlIila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~ 134 (171)
T d2g5ca2 59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN 134 (171)
T ss_dssp GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred hccccccccccCC--chhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence 3468999999999 56677888999999999999988777644 23444433 45899999975321
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
....+-++++..++++.++.++.|++.+|..++.
T Consensus 135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY 170 (171)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 1455678899999999999999999999987764
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.64 E-value=1.1e-15 Score=135.84 Aligned_cols=148 Identities=15% Similarity=0.094 Sum_probs=119.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||.+|+..|.++| ++|++||+++++++...+ +. .+...++.+++.+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~-----------~~------------~~~~~~~~~~v~~ 57 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEK-----------EL------------GVETSATLPELHS 57 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHH-----------HT------------CCEEESSCCCCCT
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhh-----------hc------------ccccccccccccc
Confidence 58999999999999999998887 899999999998766331 11 2344566778899
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeCCCCcH
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQTSP 305 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~~t~~ 305 (561)
||+||.||+ ++...++++++ .+.+.+++|..++.+++.+.+.++...+++..+|+.|......+. ++.+...++
T Consensus 58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~ 132 (152)
T d1yqga2 58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE 132 (152)
T ss_dssp TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence 999999997 44445555544 345788899999999999999988778899999999998877666 456777889
Q ss_pred HHHHHHHHHHHhcCCceE
Q 008576 306 QVIVDLLDIGKKIKKTPI 323 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v 323 (561)
+..+.+..++..+|+...
T Consensus 133 ~~~~~v~~l~~~~G~~~~ 150 (152)
T d1yqga2 133 TDRRIADRIMKSVGLTVW 150 (152)
T ss_dssp HHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhCCCEEE
Confidence 999999999999996543
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.63 E-value=1.8e-16 Score=157.58 Aligned_cols=135 Identities=23% Similarity=0.312 Sum_probs=111.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcc-cCCCC-CchhHHHHHHHHHHHHHhhC-
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYK-TDKIE-PLGEAREIFKFARAQARKQA- 77 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~-~~~~~-~~~~~~~~~~~a~~~~~~~~- 77 (561)
|++||++++|+||+++||||+|||+++|++.+.++|++++..+.++.+.... ..... +.......+...++.+++++
T Consensus 167 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
T d1wdka4 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAG 246 (310)
T ss_dssp HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhhhhhhhcc
Confidence 5789999999999999999999999999999999999999865443333222 22222 22233456667777777764
Q ss_pred CCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 78 ~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.+|||+.+++++|+.+...+++++|+.|++.|.+++.|+++++++++|++||+.+|.+
T Consensus 247 ~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a 304 (310)
T d1wdka4 247 PNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKA 304 (310)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Confidence 5799999999999999999999999999999999999999999999999999888853
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.59 E-value=3.8e-15 Score=132.16 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=115.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+|+..|.++|++|+++++++++.++..+. .| +..+.+. +.+++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~ 57 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA-------------LPYAMSHQDLIDQ 57 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT-------------CCBCSSHHHHHHT
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccc----------cc-------------eeeechhhhhhhc
Confidence 589999999999999999999999999999999887653211 11 2233344 44789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCC-eEEEEeCCCCcH
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTSP 305 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~~t~~ 305 (561)
||+||.||+ ++...+++ +.+.++.+|+|.++++.++.+.+.+....+++..+|+.|+.... ...++.+..+++
T Consensus 58 ~dvIilavk--p~~~~~vl----~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~ 131 (152)
T d2ahra2 58 VDLVILGIK--PQLFETVL----KPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ 131 (152)
T ss_dssp CSEEEECSC--GGGHHHHH----TTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred cceeeeecc--hHhHHHHh----hhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence 999999996 44444444 44677888999999999999999887777899999988877654 445667888899
Q ss_pred HHHHHHHHHHHhcCCc
Q 008576 306 QVIVDLLDIGKKIKKT 321 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~ 321 (561)
+..+.++++++.+|+.
T Consensus 132 ~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 132 ELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHhCCCE
Confidence 9999999999999964
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.55 E-value=9.2e-15 Score=131.08 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=105.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||..|+++||+|++||+++++++... +.+ .....+. +.+++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-----------~~~-------------~~~~~~~~e~~~~ 56 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-----------AAG-------------AETASTAKAIAEQ 56 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEECSSHHHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-----------Hhh-------------hhhcccHHHHHhC
Confidence 5899999999999999999999999999999999877643 222 1223333 45789
Q ss_pred CCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCH--HHHHhhcc-CccceecccccC-CC--CCCCeEEEE
Q 008576 227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFS-PA--HVMPLLEIV 298 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~~-P~--~~~~lveiv 298 (561)
||+||.|||++.+++..++ ..+.+.+.++++|+..++..|- .++++.+. ...+|+..+... |. ....+.-++
T Consensus 57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~ 136 (161)
T d1vpda2 57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV 136 (161)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence 9999999997766655544 3477888899988765444332 23444442 223333332221 11 124556566
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
.| +++.++.++++++.+|+.+++++
T Consensus 137 gG---~~~~~~~~~~il~~~~~~i~~~G 161 (161)
T d1vpda2 137 GG---DKAIFDKYYDLMKAMAGSVVHTG 161 (161)
T ss_dssp ES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cC---CHHHHHHHHHHHHHhcCceEECC
Confidence 66 78999999999999999888764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.55 E-value=1.4e-14 Score=128.47 Aligned_cols=139 Identities=20% Similarity=0.235 Sum_probs=106.9
Q ss_pred cccceEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 144 PRRVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 144 ~~~~~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
...|+||+||| +|.||++||..|.++||+|++||++++.... +
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~------------------------------------~ 49 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE------------------------------------S 49 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH------------------------------------H
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc------------------------------------h
Confidence 35689999999 8999999999999999999999998654221 1
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCCC----CCeEE
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV----MPLLE 296 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~----~~lve 296 (561)
.+.++|+++.++| ......++.++.+.++++++|+..+|..+ ...+.+. .+.+|++.||+..+.. ...+.
T Consensus 50 ~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~~~v 125 (152)
T d2pv7a2 50 ILANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQVVV 125 (152)
T ss_dssp HHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTCEEE
T ss_pred hhhhccccccccc--hhhheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCcEEE
Confidence 2467999999998 45667888999999999999887665443 2344433 3568999999865432 45566
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
++++ .+++.++++.++++.+|..++.
T Consensus 126 ~~~g--~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 126 RCDG--RFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp EEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred EecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence 6666 4567889999999999988764
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.54 E-value=3.9e-16 Score=147.43 Aligned_cols=198 Identities=16% Similarity=0.165 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcCcc--chHHHHH------HHHhCCCcEEEEeCCHHHH-HHH
Q 008576 116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL--MGSGIAT------ALILSNYPVILKEVNEKFL-EAG 186 (561)
Q Consensus 116 ~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~--mG~~iA~------~la~~G~~V~l~d~~~~~~-~~~ 186 (561)
.++..++..|..-....|..+... .....++.++|+|+ ||.+|++ +|++.|+.|++.|.|++.. +..
T Consensus 13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~ 88 (242)
T d2b0ja2 13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH 88 (242)
T ss_dssp HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence 345566666654433333222111 12235688999997 9999988 6899999999999997654 332
Q ss_pred HH--------HHHHHHHHHHHcCC---------CCHHHHHhhhccccccccc-cccCCCCEEEEeccCChhhHHHHHHHH
Q 008576 187 IG--------RVRANLQSRVKKGK---------MTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 248 (561)
Q Consensus 187 ~~--------~i~~~~~~~~~~g~---------~~~~~~~~~~~~i~~~~~~-~~l~~aDlVieav~e~~~~k~~v~~~l 248 (561)
.. .+++.+....+... +++++ ..++.++|. +.+++||+||+|+|+. +.+.+++++|
T Consensus 89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe-----~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I 162 (242)
T d2b0ja2 89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPED-----VGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKF 162 (242)
T ss_dssp HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGG-----GTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHH
T ss_pred hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHH-----CCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHH
Confidence 22 23333333334332 22211 123444554 6689999999999954 7788999999
Q ss_pred HhhcCCCceeeecCCCCCH---HHHHhhcc-CccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 249 EKYCPPHCILASNTSTIDL---NLIGERTY-SKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 249 ~~~~~~~~ii~s~tS~~~~---~~l~~~~~-~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
.+.+++++||++.+| +++ .++.+.+. ++.+|++.||++++.......++.+ .++++.++.+.++++.+|+.+++
T Consensus 163 ~~~l~~g~Iiid~ST-i~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~v 240 (242)
T d2b0ja2 163 ADAIPEGAIVTHACT-IPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFK 240 (242)
T ss_dssp GGGSCTTCEEEECSS-SCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEE
T ss_pred HhhCCCCcEEEecCC-CcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEe
Confidence 999999999865444 443 35555554 4678999999998876665555544 57899999999999999999887
Q ss_pred E
Q 008576 325 V 325 (561)
Q Consensus 325 v 325 (561)
+
T Consensus 241 v 241 (242)
T d2b0ja2 241 M 241 (242)
T ss_dssp E
T ss_pred C
Confidence 6
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.49 E-value=6.3e-14 Score=125.60 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=103.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
|+||+|||+|.||.+||.+|+++||+|++||+++++.+... ..+. ....+..+.+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~-----------~~~~------------~~~~~~~e~~~~ 57 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAGA------------SAARSARDAVQG 57 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC------------EECSSHHHHHTS
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhh-----------hhhc------------cccchhhhhccc
Confidence 67999999999999999999999999999999998876533 2221 111122255789
Q ss_pred CCEEEEeccCChhhHHHHHH---HHHhhcCCCceeeecCCCCCHH---HHHhhcc-CccceecccccCCC---CCCCeEE
Q 008576 227 VDMVIEAIIENVSLKQQIFA---DLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA---HVMPLLE 296 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~---~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~---~~~~lve 296 (561)
+|+|+.|++.+... ++++. .+.+.+.++.||+. +|+..++ ++++.+. +.-+|+..+..-.+ ....+.-
T Consensus 58 ~diii~~v~~~~~~-~~v~~~~~~~~~~l~~g~iiid-~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~ 135 (162)
T d3cuma2 58 ADVVISMLPASQHV-EGLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF 135 (162)
T ss_dssp CSEEEECCSCHHHH-HHHHHSTTCHHHHSCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred cCeeeecccchhhH-HHHHhccccccccCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence 99999999976544 45543 36667788887764 3444443 4444442 22344433222211 1245566
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
++.| +++++++++++++.+|+..++++
T Consensus 136 ~~gG---~~~~~~~~~~il~~~~~~v~~~G 162 (162)
T d3cuma2 136 MVGG---DAEALEKARPLFEAMGRNIFHAG 162 (162)
T ss_dssp EEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EecC---CHHHHHHHHHHHHHHcCccEECc
Confidence 6665 78899999999999998888764
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.3e-14 Score=135.02 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=88.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|++|+++||||+|||++++.+++.+++++++..+ |
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 205 (258)
T d2fw2a1 162 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYN-A----------------------------------- 205 (258)
T ss_dssp HHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred hhccCcccccccccccccccccccccccccccchhhhhhhhhh-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|++|++.+|++||+|+
T Consensus 206 ~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~ 257 (258)
T d2fw2a1 206 IVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE 257 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 3777889999998888899999999999999999999999999999999875
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=99.39 E-value=1.1e-13 Score=134.53 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=91.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||+.|+|+||+++||||+|||++++++.|.++|++++.. | +
T Consensus 164 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~----------------------------------~ 207 (269)
T d1nzya_ 164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAA--P----------------------------------T 207 (269)
T ss_dssp HHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHS--C----------------------------------H
T ss_pred ccccccccchhHHHHcCCccccccccccccchhhhhhhhhhh--h----------------------------------H
Confidence 478999999999999999999999999999999999999984 2 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPG 136 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~ 136 (561)
.+...+|+.++.+...+++++++.|.+.+..++.++++++++.+|++||+|++.+.
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~~ 263 (269)
T d1nzya_ 208 HLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV 263 (269)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCCC
Confidence 36778999999998899999999999999999999999999999999999987544
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=2.4e-13 Score=130.96 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|++|+++||||+|+|.+++.+.+.+++++++..+ +
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~------------------------------------~ 200 (253)
T d1uiya_ 157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA------------------------------------P 200 (253)
T ss_dssp HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC------------------------------------H
T ss_pred HhhcCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccc------------------------------------h
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|++++.....++++++..|.+.+..++.|+|+++++++|++||+|+
T Consensus 201 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~ 252 (253)
T d1uiya_ 201 TSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR 252 (253)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 3777899999999999999999999999999999999999999999999875
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=7.5e-13 Score=127.99 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=89.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++|+|+||+++||||+|++.+++.+.+.+++.+++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~------------------------------------~ 204 (260)
T d1mj3a_ 161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS------------------------------------K 204 (260)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSC------------------------------------H
T ss_pred HHHcCcccCchhhccCCCceeeecccccccccccccccccchh------------------------------------h
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.|...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f 257 (260)
T d1mj3a_ 205 IIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF 257 (260)
T ss_dssp HHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 37788999999999999999999999999999999999999999999998865
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=7.1e-13 Score=128.32 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=84.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++|+|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 167 l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 210 (263)
T d1wz8a1 167 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGP-K----------------------------------- 210 (263)
T ss_dssp HHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred hcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccH-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++....... +.++.|.+.+..++.|+|++|++++|++||+|+-
T Consensus 211 ~al~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f 262 (263)
T d1wz8a1 211 EALHHTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 262 (263)
T ss_dssp HHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence 377788999988776544 5688999999999999999999999999998764
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.4e-13 Score=129.43 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=84.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|++|+++||||+|||++++.+.+.++|.+++..-.. .++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~--------------------------------~~p 210 (266)
T d1hzda_ 163 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLP--------------------------------QGP 210 (266)
T ss_dssp HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTT--------------------------------SCH
T ss_pred hhccCCccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhccc--------------------------------CCh
Confidence 578999999999999999999999988766666555444431000 122
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+-.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 264 (266)
T d1hzda_ 211 VAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK 264 (266)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 478889999999998999999999999999999999999999999999987653
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=1.6e-12 Score=126.70 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=86.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCc-hHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQ-LVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~-l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|+++|++++|+||+++||||+|+|.++ +.+++.+++++++..+ |
T Consensus 172 ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~-p---------------------------------- 216 (275)
T d1dcia_ 172 LTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS-P---------------------------------- 216 (275)
T ss_dssp HHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred ccccccccchhhhccCCCceeeeehhhhhhhccccccccccccc-H----------------------------------
Confidence 467899999999999999999998765 5677889999999842 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.|+..+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|+-
T Consensus 217 -~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~ 269 (275)
T d1dcia_ 217 -VAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKS 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 37778999999999899999999999999999999999999999999988764
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.22 E-value=9.2e-12 Score=113.89 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=79.3
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-c
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (561)
+.|+||+|||+|.||.++|..|+++||+|++|+++++.++...+ ..+....-++ -....++.++++++ .
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~--------~~~n~~yl~~--~~l~~~i~~t~~l~~a 74 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNE--------KRENVLFLKG--VQLASNITFTSDVEKA 74 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHH--------HTBCTTTSTT--CBCCTTEEEESCHHHH
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhh--------cccccccccc--cccccccccchhhhhc
Confidence 56889999999999999999999999999999999988765331 1111111111 01234677788875 4
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhh-----cCCCceeeecCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKY-----CPPHCILASNTSTI 265 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~-----~~~~~ii~s~tS~~ 265 (561)
+++||+||.||| ....+.+++++.+. ..++.+|++.+.++
T Consensus 75 ~~~ad~iiiavP--s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi 119 (189)
T d1n1ea2 75 YNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 119 (189)
T ss_dssp HTTCSCEEECSC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred cCCCCEEEEcCc--HHHHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence 899999999999 66778888887653 34566666665554
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=5.2e-12 Score=121.95 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=82.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||+.++|+||+++||||+|||++++.+.+.++|++++..+ |
T Consensus 160 ~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-~----------------------------------- 203 (261)
T d1ef8a_ 160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred ccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcC-c-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCCh--HHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGP--RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~--~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|...+|++++....... ...++.+...+..++.|+|++|++++|++||+|+..
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~ 259 (261)
T d1ef8a_ 204 LAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV 259 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCC
Confidence 377788999988766554 344555667788899999999999999999987653
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.20 E-value=6.6e-12 Score=123.64 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=82.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 195 llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~-~----------------------------------- 238 (297)
T d1q52a_ 195 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKS-P----------------------------------- 238 (297)
T ss_dssp HHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred ccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.|...+|++++... .++.+....|.+.+..++.|+|++|++++|++||+|+-.
T Consensus 239 ~a~~~~K~~~~~~~-~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~ 291 (297)
T d1q52a_ 239 QAQRMLKFAFNLLD-DGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWS 291 (297)
T ss_dssp HHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCT
T ss_pred HHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence 36777888887754 345555567888888999999999999999999988653
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.18 E-value=2.6e-11 Score=109.70 Aligned_cols=151 Identities=9% Similarity=0.016 Sum_probs=98.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
.+|+|||+|.||.+||..|+++||+|++|||++++++... +.+..... ........+..+.+.++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~~~~~~~----~~~a~~~~~~~~~~~~~ 67 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-----------ANEAKGTK----VLGAHSLEEMVSKLKKP 67 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-----------HTTTTTSS----CEECSSHHHHHHHBCSS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------Hhcccccc----ccchhhhhhhhhhhccc
Confidence 4899999999999999999999999999999999887643 22211000 00000001112457889
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCC-------CCCeEEE
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAH-------VMPLLEI 297 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~-------~~~lvei 297 (561)
|++|.+++.... ..+++..+.+.+.++++++..++..+.. ++++.+.. .|.+|.. |+. ... .-+
T Consensus 68 ~~ii~~~~~~~~-v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~----~g~~~ldapvsGg~~~A~~G~-~~~ 141 (176)
T d2pgda2 68 RRIILLVKAGQA-VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKD----KGILFVGSGVSGGEDGARYGP-SLM 141 (176)
T ss_dssp CEEEECSCTTHH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH----TTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred ceEEEecCchHH-HHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHh----cCCceeccccccCcccccCCc-EEE
Confidence 999999997654 4557788989999999876544433322 33333321 2555543 222 122 224
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCce
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKTP 322 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~ 322 (561)
+.| ++++++.++++++.++..+
T Consensus 142 ~gG---~~~~~~~~~~il~~~~~kv 163 (176)
T d2pgda2 142 PGG---NKEAWPHIKAIFQGIAAKV 163 (176)
T ss_dssp EEE---CTTTHHHHHHHHHHHSCBC
T ss_pred cCC---CHHHHHHHHHHHHHHhccc
Confidence 444 6778899999999998764
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=4.8e-12 Score=111.92 Aligned_cols=142 Identities=7% Similarity=-0.065 Sum_probs=90.4
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCE
Q 008576 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 229 (561)
|+|||+|.||.+|+..|.+.++.+.+|+|+++++++..+ .+ . ....+..+.++.+|+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~-----------~~-----------~-~~~~~~~~~~~~~Di 58 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE-----------VY-----------G-GKAATLEKHPELNGV 58 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHH-----------HT-----------C-CCCCSSCCCCC---C
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhh-----------cc-----------c-ccccchhhhhccCcE
Confidence 689999999999999887655556799999998876432 11 1 112333466899999
Q ss_pred EEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--------CCCeEEEEeCC
Q 008576 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VMPLLEIVRTN 301 (561)
Q Consensus 230 Vieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--------~~~lveiv~~~ 301 (561)
||.|||++ ...+++.++ ..++.++++.+++.+.+.+.. ....+.||..++. ....+-.+.+
T Consensus 59 Vil~v~d~--~i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 127 (153)
T d2i76a2 59 VFVIVPDR--YIKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLEG- 127 (153)
T ss_dssp EEECSCTT--THHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEECC-
T ss_pred EEEeccch--hhhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEEeC-
Confidence 99999954 334454443 246888888777777655432 2345667653221 1112223333
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
+++.++.++++++.+|..++.+.+
T Consensus 128 --d~~~~~~~~~l~~~lG~~~~~i~~ 151 (153)
T d2i76a2 128 --DERGLPIVKKIAEEISGKYFVIPS 151 (153)
T ss_dssp --CTTTHHHHHHHHHHHCSCEEECCG
T ss_pred --CHHHHHHHHHHHHHHCCcEEEeCC
Confidence 567889999999999998888763
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.15 E-value=8.9e-11 Score=106.32 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=98.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc----ccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD----YES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~ 223 (561)
+||+|||+|.||.+||.+|+++||+|++||+++++.+... +.+..... ........+ ...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~-----------~~~~~~~~-----~~~~~~~~~~~~~~~~ 65 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFM-----------KANASAPF-----AGNLKAFETMEAFAAS 65 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH-----------HHTTTSTT-----GGGEEECSCHHHHHHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HcCCcccc-----ccchhhhhhhhHHHHh
Confidence 4899999999999999999999999999999999887644 22221110 011111111 123
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhcc-CccceecccccCCCC---CCCeEEE
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFSPAH---VMPLLEI 297 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~~P~~---~~~lvei 297 (561)
+..++.++++++....+ ..++..+...+.++++++..++..+- .++++.+. ..-+++....+..+. ... ..+
T Consensus 66 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~m 143 (178)
T d1pgja2 66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFF 143 (178)
T ss_dssp BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred cccceEEEEeecCcchh-hhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEE
Confidence 57788888888865544 45667777888888877654433332 24444442 233444433322111 122 335
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCceE
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKTPI 323 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~v 323 (561)
+.| ++++++.++++++.+++.+.
T Consensus 144 vgG---~~~~~~~v~pil~~~~~~~~ 166 (178)
T d1pgja2 144 PGG---TLSVWEEIRPIVEAAAAKAD 166 (178)
T ss_dssp EEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred eeC---CHHHHHHHHHHHHHHhcccc
Confidence 555 78999999999999997765
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.12 E-value=5.1e-11 Score=105.03 Aligned_cols=147 Identities=13% Similarity=0.060 Sum_probs=90.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||..|+++||+|++||+++......... ..+ ...+. +.+++
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~---------~~~---------------~~~~~~e~~~~ 56 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR---------TVG---------------VTETSEEDVYS 56 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---------HHT---------------CEECCHHHHHT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh---------ccc---------------ccccHHHHHhh
Confidence 589999999999999999999999999999887655432210 001 11222 45789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC--CCHHHHHhhccCccceecccccCCCC--CCCeEEEEeCCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQ 302 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~ 302 (561)
||+||.|||.+.. .++..++.... +.+++..++. -...++++.+.. .+|+..+.+.++. .....-++.|+.
T Consensus 57 ~diIi~~v~~~~~--~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~~ 131 (152)
T d1i36a2 57 CPVVISAVTPGVA--LGAARRAGRHV--RGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGRD 131 (152)
T ss_dssp SSEEEECSCGGGH--HHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEESTT
T ss_pred cCeEEEEecCchH--HHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECCC
Confidence 9999999996532 34555555544 3334332222 224566666543 3466655554432 122233556643
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEcccc
Q 008576 303 TSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (561)
.+.++ .+..+|..+..+++.|
T Consensus 132 --~~~~~----~l~~~g~~i~~~G~~P 152 (152)
T d1i36a2 132 --AEEFM----KLNRYGLNIEVRGREP 152 (152)
T ss_dssp --HHHHH----GGGGGTCEEEECSSST
T ss_pred --HHHHH----HHHHcCCeeeEcCCCC
Confidence 33333 3678898888887654
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=2e-10 Score=101.56 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=98.3
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
||+|||+|.||.+||.+|+++|+.| +|+++.++.....+. .+ ......+.+.++|
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~----------~~--------------~~~~~~~~~~~~~ 56 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEE----------FG--------------SEAVPLERVAEAR 56 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHH----------HC--------------CEECCGGGGGGCS
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHH----------cC--------------Cccccccccccee
Confidence 8999999999999999999999866 677777665442211 01 1123346678899
Q ss_pred EEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceeccccc-CCCC-------CCCeEEE
Q 008576 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------VMPLLEI 297 (561)
Q Consensus 229 lVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~-------~~~lvei 297 (561)
++|.++|.+.++ ..+...+.....++.+++. +|+..++ ++++.+.. .|.+|. .|+. ...+.-+
T Consensus 57 ~~i~~~~~~~~v-~~~~~~l~~~~~~~~~iid-~sT~~p~~~~~~~~~~~~----~gi~~ldapVsGg~~~A~~G~L~~~ 130 (156)
T d2cvza2 57 VIFTCLPTTREV-YEVAEALYPYLREGTYWVD-ATSGEPEASRRLAERLRE----KGVTYLDAPVSGGTSGAEAGTLTVM 130 (156)
T ss_dssp EEEECCSSHHHH-HHHHHHHTTTCCTTEEEEE-CSCCCHHHHHHHHHHHHT----TTEEEEECCEESHHHHHHHTCEEEE
T ss_pred EEEecccchhhh-hhhhccccccccccccccc-cccCCHHHHHHHHHHHHH----cCCeEEeccccCchhhhccCCEEEE
Confidence 999999976544 4556778888888887754 4444443 44444432 155665 3443 2456666
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.| ++++++.+++++ .+++.+++++
T Consensus 131 vgG---~~~~~~~~~p~L-~~~~~v~~~G 155 (156)
T d2cvza2 131 LGG---PEEAVERVRPFL-AYAKKVVHVG 155 (156)
T ss_dssp EES---CHHHHHHHGGGC-TTEEEEEEEE
T ss_pred EeC---CHHHHHHHHHHH-HhcCcCEEeC
Confidence 666 889999999998 4888888875
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.10 E-value=5e-11 Score=108.28 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=72.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhccccccccc-ccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~-~~l 224 (561)
+||+|||+|.||.++|..|+++||+|++||++++.++...+ .+.... ............+++. +.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 70 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD-----------RGAIIAEGPGLAGTAHPDLLTSDIGLAV 70 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence 69999999999999999999999999999999988776432 111000 0000000112223444 458
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
++||+||.|+|.. ....+++++.+++.++++|+.
T Consensus 71 ~~aD~iii~v~~~--~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 71 KDADVILIVVPAI--HHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp TTCSEEEECSCGG--GHHHHHHHHGGGCCTTCEEEE
T ss_pred cCCCEEEEEEchh--HHHHHHHHhhhccCCCCEEEE
Confidence 9999999999854 568899999999999997654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.04 E-value=2.1e-09 Score=99.05 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=94.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
|||+|||+|.+|.++|.+|+.+||+|++||.|++.++...+. +.+.+... ....++..++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~------------~~~~~~~~~~ 68 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG------------RQTGRLSGTT 68 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHH------------HHTTCEEEES
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhh------------hcccccccCC
Confidence 589999999999999999999999999999999987764321 01111111 1123556677
Q ss_pred ccc-ccCCCCEEEEeccCC--------hhhHHHHHHHHHhh---cCCCceeeecCCCCCHH---HHHh-hccC-ccceec
Q 008576 220 DYE-SFKDVDMVIEAIIEN--------VSLKQQIFADLEKY---CPPHCILASNTSTIDLN---LIGE-RTYS-KDRIVG 282 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~e~--------~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~~~---~l~~-~~~~-~~r~ig 282 (561)
+++ .+.+||+++.|||.. ......+.+.+... ..++++|+. .|++++. .+.. .+.. .....+
T Consensus 69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii-~STv~pGtt~~~~~~~l~~~~~~~~~ 147 (202)
T d1mv8a2 69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAG 147 (202)
T ss_dssp CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBT
T ss_pred CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceee-ccccCCcchhhhhhhhhhcccccccc
Confidence 764 488999999999853 23334455544433 445665543 3444432 1111 1100 001111
Q ss_pred ccc---cCCCCCC----------CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 283 AHF---FSPAHVM----------PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 283 ~h~---~~P~~~~----------~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
-.| ++|-... +-.-|+.+ .+++..+.++++++.+....+.
T Consensus 148 ~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 148 VDFGVGTNPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp TTBEEEECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEEE
T ss_pred ccccchhhhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCCeEe
Confidence 111 2332211 11124444 4688999999999998765554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.03 E-value=1.1e-10 Score=105.91 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=70.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-cc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 224 (561)
+||+|||+|.||.++|..|+++|++|++|.++ ++.++...+ ......+.. ......+..+++++ .+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~--------~~~~~~~~~---~~~~~~i~~~~~~~~~~ 69 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA--------GREHPRLGV---KLNGVEIFWPEQLEKCL 69 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT--------TCCBTTTTB---CCCSEEEECGGGHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhh--------hhhhhhhcc---hhccccccccccHHHHH
Confidence 59999999999999999999999999999884 433333110 001111100 00012345566664 58
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+++|+||.||| ....+.+++++.++++++.++..
T Consensus 70 ~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~ 103 (180)
T d1txga2 70 ENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLI 103 (180)
T ss_dssp TTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred hccchhhcccc--hhhhHHHHHhhccccccceeccc
Confidence 99999999999 67889999999999988776654
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.8e-10 Score=109.84 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=76.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|+.++|+||+++||||+|||+++|++++.++|++++..+ |
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (245)
T d2f6qa1 162 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLP-P----------------------------------- 205 (245)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred hcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~ 120 (561)
.+...+|++++.....++++.++.|.+.+..++.|+|++|
T Consensus 206 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n 245 (245)
T d2f6qa1 206 NALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN 245 (245)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence 3777899999998888899999999999999999999974
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.91 E-value=1.9e-09 Score=93.62 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=78.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
-+||+|||+|.+|.++|..|+..|. +|+++|++++.++.-. ++....... .......+.+++++
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a------~Dl~~a~~~--------~~~~~~~~~d~~~~ 70 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDA------LDLEDAQAF--------TAPKKIYSGEYSDC 70 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH------HHHHGGGGG--------SCCCEEEECCGGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHH------HHHhccccc--------cCCceEeeccHHHh
Confidence 4699999999999999999999884 8999999998654311 111100000 01123346688999
Q ss_pred CCCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCcee-eecCCCCCHHHHHhhccC-ccceecc
Q 008576 225 KDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYS-KDRIVGA 283 (561)
Q Consensus 225 ~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (561)
++||+||.++.. +..+.+++..++.+++++..++ +||...+....++..... +.|++|+
T Consensus 71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~ 145 (146)
T d1ez4a1 71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS 145 (146)
T ss_dssp TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence 999999998621 2346777778888876544432 344332222233343343 5677775
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.91 E-value=2.4e-09 Score=93.42 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=78.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..++..|. +++++|++++.++.-...+ ....-... ......+.++++++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl------~~~~~~~~-------~~~~~~~~d~~~l~ 73 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDF------NHGKVFAP-------KPVDIWHGDYDDCR 73 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHH------HHHTTSSS-------SCCEEEECCGGGTT
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccH------hhCccccC-------CCeEEEECCHHHhc
Confidence 599999999999999999999886 7999999998765422111 11111000 01123356789999
Q ss_pred CCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCcee-eecCCCCCHHHHHhhcc-Cccceecc
Q 008576 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTY-SKDRIVGA 283 (561)
Q Consensus 226 ~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~l~~~~~-~~~r~ig~ 283 (561)
+||+||.+.- .+..+.+++.+++.+++++..++ +||...+....++.... .|.|++|+
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~ 147 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGS 147 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence 9999998862 23457778888898887654433 24433222222333333 35788775
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.86 E-value=3.9e-09 Score=91.23 Aligned_cols=123 Identities=24% Similarity=0.349 Sum_probs=79.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.||+|||+|.+|+++|..++..|. +++++|++++.++.-. +|........ ....+..++++++++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a------~Dl~~a~~~~-------~~~~i~~~~~~~~~~ 68 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEV------LDMQHGSSFY-------PTVSIDGSDDPEICR 68 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHH------HHHHHTGGGS-------TTCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHH------HHHHhccccC-------CCceeecCCCHHHhh
Confidence 489999999999999999999987 8999999998764321 1111111100 012344567788999
Q ss_pred CCCEEEEec--------------cCChhhHHHHHHHHHhhcCCCcee-eecCCCCCHHHHHhhcc-Cccceecc
Q 008576 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTY-SKDRIVGA 283 (561)
Q Consensus 226 ~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~l~~~~~-~~~r~ig~ 283 (561)
+||+||.+. ..+..+.+++..++.++++...++ +||........+.+... .+.|++|+
T Consensus 69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~ 142 (143)
T d1llda1 69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGS 142 (143)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence 999999886 124557788888888887555432 34433222222233333 35777775
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.84 E-value=2.9e-09 Score=92.24 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=68.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..++..|. +++++|++++.++.....+..... .......+..++++++++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~------------~~~~~~~i~~~~~~~~~~ 68 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA 68 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc------------hhcccceEEecCCHHHhc
Confidence 489999999999999999999984 899999999876542211111100 001112345567788999
Q ss_pred CCCEEEEec--cC------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav--~e------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+||+||.+. |. +..+.+++.+.+.++++ +++++
T Consensus 69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivi 115 (142)
T d1guza1 69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIII 115 (142)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEE
T ss_pred CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEE
Confidence 999999986 22 33466777788888875 55443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.82 E-value=4.7e-09 Score=90.66 Aligned_cols=123 Identities=15% Similarity=0.259 Sum_probs=77.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..++..|. ++.++|++++.++.-...+.+... ..+ ...++..+.++++++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~---~~~---------~~~~i~~~~d~~~~~ 68 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA---GID---------KYPKIVGGADYSLLK 68 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH---TTT---------CCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc---ccC---------CCCccccCCCHHHhc
Confidence 599999999999999999998885 799999999876532211211110 000 112455667899999
Q ss_pred CCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHH-HHhhcc-Cccceecc
Q 008576 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTID-LNL-IGERTY-SKDRIVGA 283 (561)
Q Consensus 226 ~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~-l~~~~~-~~~r~ig~ 283 (561)
+||+||.+.. .+..+.+++..++.++++ +++++..|.... ++. +..... .+.|++|+
T Consensus 69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~k~sg~p~~rViG~ 142 (142)
T d1ojua1 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMTYIMWKESGKPRNEVFGM 142 (142)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC-CcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence 9999998862 133366666777777764 565544333222 122 233333 35677774
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.75 E-value=1.4e-08 Score=89.18 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=76.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|+++|..++..|+ ++.++|++++.++.-. +|-....-.. ....+....++++++
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~a------lDl~h~~~~~-------~~~~~~~~~d~~~~~ 87 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEM------MDLQHGSLFL-------QTPKIVADKDYSVTA 87 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH------HHHHHTGGGC-------CCSEEEECSSGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHH------HHHhcccccc-------CCCeEEeccchhhcc
Confidence 599999999999999999999997 8999999988764322 1111100000 001233456789999
Q ss_pred CCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCcee-eecCCCCCHHHHHhhccC-ccceec
Q 008576 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYS-KDRIVG 282 (561)
Q Consensus 226 ~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~l~~~~~~-~~r~ig 282 (561)
+||+||.+.- .+..+.+++..++.+..++..++ +||........+.+.... +.|++|
T Consensus 88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~~k~sglp~~rViG 160 (160)
T d1i0za1 88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIG 160 (160)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence 9999998761 13446777788888876544432 244322222223333333 466665
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=1.6e-08 Score=87.20 Aligned_cols=94 Identities=27% Similarity=0.331 Sum_probs=65.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc-cccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL-LTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~l 224 (561)
+||+|||+|.+|.++|..++..+. ++.++|++++.++.-...+ ..... .... ...+.+++++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl------~~~~~---------~~~~~~~~~~~~~~~ 65 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDL------IHGTP---------FTRRANIYAGDYADL 65 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHH------HHHGG---------GSCCCEEEECCGGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccc------ccccc---------ccccccccCCcHHHh
Confidence 599999999999999999998875 8999999998765422111 11110 1111 1234578889
Q ss_pred CCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCc
Q 008576 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 225 ~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
++||+||.+.- .+..+.+++.+.+.+++++..
T Consensus 66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~ai 111 (140)
T d1a5za1 66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSI 111 (140)
T ss_dssp TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcE
Confidence 99999999861 244467777788888876444
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.73 E-value=3e-09 Score=101.39 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=77.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|++|+++||||+|+|++++.+.+.+++++++..+ |
T Consensus 162 lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 205 (249)
T d1sg4a1 162 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIP-D----------------------------------- 205 (249)
T ss_dssp HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred cccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVH 123 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~ 123 (561)
.+...+|+.++......+.+.++.|.+.|..+..+++.++++.
T Consensus 206 ~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le 248 (249)
T d1sg4a1 206 HARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ 248 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 3677888999988888889999999999999999999988764
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.71 E-value=1.1e-08 Score=88.28 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=68.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.+|.++|..++.++. ++.++|++++..+.....+.... .......++..+.+++++++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~------------~~~~~~~~i~~~~d~~~~~~ 69 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS------------PIEGFDVRVTGTNNYADTAN 69 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTH------------HHHTCCCCEEEESCGGGGTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccc------------cccCCCCEEEecCcHHHhcC
Confidence 599999999999999999998876 89999999876554222111110 01111124556778999999
Q ss_pred CCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeee
Q 008576 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 227 aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+|+||.+.. .+..+.+++..++.++++ +++++.
T Consensus 70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aiviv 116 (142)
T d1uxja1 70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIM 116 (142)
T ss_dssp CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEE
T ss_pred CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEE
Confidence 999999872 123356677778888765 444443
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.70 E-value=2.4e-08 Score=86.50 Aligned_cols=121 Identities=20% Similarity=0.298 Sum_probs=74.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..++..|. +++++|++++.++.....+.+.. ...+ ......+.++++++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~---~~~~----------~~~~~~~~d~~~l~ 68 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM---ANLE----------AHGNIVINDWAALA 68 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSS----------SCCEEEESCGGGGT
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc---cccC----------CccceeccCHHHhc
Confidence 699999999999999999998875 89999999987654221111110 0000 01122356788999
Q ss_pred CCCEEEEeccC------------------ChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHH-HHhhcc-Cccceec
Q 008576 226 DVDMVIEAIIE------------------NVSLKQQIFADLEKYCPPHCILASNTSTID-LNL-IGERTY-SKDRIVG 282 (561)
Q Consensus 226 ~aDlVieav~e------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~-l~~~~~-~~~r~ig 282 (561)
+||+||.+... +..+.+++.+.+.+++ |+++++..|-... ++. +.+... .+.|++|
T Consensus 69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG 145 (146)
T d1hyha1 69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIG 145 (146)
T ss_dssp TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeC
Confidence 99999987531 2235666777777766 4565543333221 222 233333 3466776
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=1.9e-09 Score=95.84 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=72.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||+.+|..|+++||+|++++++++..+... ..+. . . .........++.+.+.++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-----------~~~~---~-~-~~~~~~~~~~~~~~~~~~ 64 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVET---D-G-SIFNESLTANDPDFLATS 64 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECT---T-S-CEEEEEEEESCHHHHHTC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-----------cccC---C-c-cccccccccchhhhhccc
Confidence 5999999999999999999999999999999876432200 0000 0 0 000111223334567899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHH
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~ 269 (561)
|+||.|++. .-..++++.+.+++.++++|++...++...+
T Consensus 65 D~iii~vka--~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~ 104 (167)
T d1ks9a2 65 DLLLVTLKA--WQVSDAVKSLASTLPVTTPILLIHNGMGTIE 104 (167)
T ss_dssp SEEEECSCG--GGHHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred ceEEEeecc--cchHHHHHhhccccCcccEEeeccCcccHHH
Confidence 999999974 3456788899999999998877666665443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.66 E-value=1.6e-08 Score=87.21 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=71.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc-cccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL-LTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~l 224 (561)
+||+|||+|.+|.++|..++.+|. +++++|++++.++.-. ++- .... . .... ...+.+++++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a------~Dl--~~~~-~------~~~~~~~~~~~~~~~ 66 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEA------MDI--NHGL-P------FMGQMSLYAGDYSDV 66 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHH------HHH--TTSC-C------CTTCEEEC--CGGGG
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceee------eee--ccCc-c------cCCCeeEeeCcHHHh
Confidence 489999999999999999999986 8999999998654311 111 1110 0 0011 1224578889
Q ss_pred CCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCcee-eecCCCCCHHH-HHhhcc-Cccceecc
Q 008576 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNL-IGERTY-SKDRIVGA 283 (561)
Q Consensus 225 ~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~-l~~~~~-~~~r~ig~ 283 (561)
++||+||.+.- .+..+.+++.+++.++.++..++ +||.... ++. ++.... .+.|++|+
T Consensus 67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv-~t~~~~k~sg~p~~rViG~ 141 (142)
T d1y6ja1 67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDI-ITYMIQKWSGLPVGKVIGS 141 (142)
T ss_dssp TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHH-HHHHHHHHHTCCTTTEEEC
T ss_pred CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHH-HHHHHHHHHCCCccceecC
Confidence 99999999852 23446677777888877544322 3442222 222 233333 34677775
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.57 E-value=4.4e-08 Score=85.72 Aligned_cols=125 Identities=23% Similarity=0.345 Sum_probs=76.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
+-+||+|||+|.+|..+|..++..++ +++++|++++.++.....+..... . .+ ....+..++++ ++
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~-~--~~---------~~~~~~~~~~~~~~ 73 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTS-V--VD---------TNVSVRAEYSYEAA 73 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH-H--TT---------CCCCEEEECSHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcc-c--cC---------CeeEEeccCchhhh
Confidence 45799999999999999999988886 899999999876543322222110 0 01 01123334454 46
Q ss_pred cCCCCEEEEecc------------C-------ChhhHHHHHHHHHhhcCCCceeeecCCCCC-HH-HHHhhcc-Ccccee
Q 008576 224 FKDVDMVIEAII------------E-------NVSLKQQIFADLEKYCPPHCILASNTSTID-LN-LIGERTY-SKDRIV 281 (561)
Q Consensus 224 l~~aDlVieav~------------e-------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~-~l~~~~~-~~~r~i 281 (561)
+++||+||.+.. . +..+.+++.+++.+++++ ++++..|.... ++ .+.+... .+.|++
T Consensus 74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPvd~lt~~~~~~sg~p~~rVi 152 (154)
T d1pzga1 74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPLDCMVKVMCEASGVPTNMIC 152 (154)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSHHHHHHHHHHHHCCCGGGEE
T ss_pred hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHhCcChhcEe
Confidence 899999999772 1 223667777888887765 44433332221 22 2233333 356777
Q ss_pred cc
Q 008576 282 GA 283 (561)
Q Consensus 282 g~ 283 (561)
|+
T Consensus 153 G~ 154 (154)
T d1pzga1 153 GM 154 (154)
T ss_dssp EC
T ss_pred cC
Confidence 74
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=6.5e-08 Score=84.73 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=66.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.||+|||+|.+|..+|..++..|+ +++++|++++.+..-...+ ....-... ...+..+.++++++
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl------~~~~~~~~-------~~~~~~~~d~~~~~ 86 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDL------QHGSLFLS-------TPKIVFGKDYNVSA 86 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHH------HHTTTTCS-------CCEEEEESSGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHH------hCcchhcC-------CCeEEeccchhhhc
Confidence 599999999999999999999986 8999999998765422111 11110000 01233456788999
Q ss_pred CCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeee
Q 008576 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 226 ~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+||+||.+.- .+..+.+++..++.+..+ +.|++.
T Consensus 87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p-~~iviv 134 (159)
T d2ldxa1 87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIV 134 (159)
T ss_dssp TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEE
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEE
Confidence 9999998762 133456666666777655 554443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.57 E-value=9.9e-08 Score=82.35 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=63.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+||+|||+ |.+|.++|..++..|. ++.++|++++. ++.....+.. .....+.-. .-.+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~---~~~~~~~~~-------~~~~~~~~d~~ 70 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD---ALAGTRSDA-------NIYVESDENLR 70 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHH---HHTTSCCCC-------EEEEEETTCGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchh---cccccccCC-------ccccCCcchHH
Confidence 48999996 9999999999999985 99999998643 2211111111 110001000 00122345788
Q ss_pred ccCCCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCcee
Q 008576 223 SFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 223 ~l~~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ii 258 (561)
++++||+||.+. | .|..+.+++..++.++++. .|+
T Consensus 71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~ii 119 (145)
T d1hyea1 71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIF 119 (145)
T ss_dssp GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEE
T ss_pred HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCC-eEE
Confidence 999999999985 2 1334667777888888754 444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.53 E-value=1.2e-07 Score=82.40 Aligned_cols=123 Identities=20% Similarity=0.346 Sum_probs=76.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
.||+|||+|..|+.+|..++..+. ++.++|++++.++.....+.+.. .. ......+..+.+++++++
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~-~~-----------~~~~~~v~~~~~~~~~~~ 71 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTN-VM-----------AYSNCKVSGSNTYDDLAG 71 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHH-HH-----------HTCCCCEEEECCGGGGTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhc-cc-----------cCCCcEEEecccccccCC
Confidence 599999999999999998888875 89999999877654322222110 00 001123444567889999
Q ss_pred CCEEEEecc--C-----------------ChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHH-hhcc-Cccceecc
Q 008576 227 VDMVIEAII--E-----------------NVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIG-ERTY-SKDRIVGA 283 (561)
Q Consensus 227 aDlVieav~--e-----------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~-~~~~-~~~r~ig~ 283 (561)
+|+||.+.- . +..+.+++..++.++++ +++++..|.... ++.+. .... .+.|++|+
T Consensus 72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~ 149 (150)
T d1t2da1 72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL 149 (150)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence 999998862 1 12256666777888765 555543332222 22322 2222 35777775
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=98.40 E-value=4e-08 Score=92.19 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=60.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 200 (230)
T d2a7ka1 157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYP-A----------------------------------- 200 (230)
T ss_dssp HHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred cccccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAE 107 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~ 107 (561)
.|...+|+.+++.....+++.++.|..
T Consensus 201 ~a~~~~K~~l~~~~~~~l~~~~~~~~a 227 (230)
T d2a7ka1 201 SAFINTKRAVNKPFIHLLEQTRDASKA 227 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 377789999998877777777776654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.38 E-value=5.9e-07 Score=81.72 Aligned_cols=111 Identities=20% Similarity=0.290 Sum_probs=67.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh----ccccccccc-c
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI----SLLTGVLDY-E 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~----~~i~~~~~~-~ 222 (561)
|||+|||+|.+|..+|..|+ .|++|+++|.|++.++...+.. -.+.+...+..+ .++..+++. .
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~----------~p~~e~~l~~~~~~~~~~~~~~~~~~~ 69 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGL----------SPIQDEYIEYYLKSKQLSIKATLDSKA 69 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcc----------cccchhhHHHHhhhhhhhhhccchhhh
Confidence 58999999999999998776 6999999999999887643210 001111122211 223333333 4
Q ss_pred ccCCCCEEEEeccCChh---------hHHHHHHHHHhhcCCCceeeecCCCCCHHHHH
Q 008576 223 SFKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 271 (561)
...++|+++.|+|.... ......+.+... .++.+++. .|+.++....
T Consensus 70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii-~Stv~pgt~~ 125 (196)
T d1dlja2 70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLII-KSTIPIGFIT 125 (196)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEE-CSCCCTTHHH
T ss_pred hhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEe-eeecCceeee
Confidence 46899999999975332 333444445444 44555543 5555554433
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.28 E-value=1.8e-06 Score=73.84 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=62.6
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILG-GGLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
.||+||| +|.+|..+|..++..|. ++.++|++. +.++. . .++........+ ...+ .+.+++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g-~-----a~Dl~~~~~~~~-------~~~i-~~~~~~ 66 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVG-Q-----AADTNHGIAYDS-------NTRV-RQGGYE 66 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHH-H-----HHHHHHHHTTTC-------CCEE-EECCGG
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccce-e-----ecchhhcccccC-------CceE-eeCCHH
Confidence 4999999 69999999999999986 799999753 22221 1 111111111000 0122 245788
Q ss_pred ccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeee
Q 008576 223 SFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 223 ~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
++++||+||.+.- .|..+.+++..++.++++ +.+++.
T Consensus 67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p-~~i~iv 117 (142)
T d1o6za1 67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLT 117 (142)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEE
T ss_pred HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCC-CceEEE
Confidence 8999999998751 134467777778887765 454443
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=98.25 E-value=9.3e-08 Score=90.70 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=39.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|+|||++++|+||+++||||+|||++++.+.+.++|++++..
T Consensus 169 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 210 (249)
T d1szoa_ 169 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210 (249)
T ss_dssp HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTS
T ss_pred ecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999985
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.22 E-value=2.2e-06 Score=75.94 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=49.0
Q ss_pred eEEEEEcCccchHHHHH--HHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLMGSGIAT--ALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+||+|||+|..|...+. .++.. +.+++++|+++++++.....+.+..... + ..-++..++|.
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~i~~~td~ 70 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV---G---------ADLKFEKTMNL 70 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT---T---------CCCEEEEESCH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhc---C---------CCeEEEEeCCh
Confidence 59999999999976443 23332 4699999999998875433332222111 1 01245556665
Q ss_pred -cccCCCCEEEEec
Q 008576 222 -ESFKDVDMVIEAI 234 (561)
Q Consensus 222 -~~l~~aDlVieav 234 (561)
+++.+||+||.++
T Consensus 71 ~eaL~dad~Vv~~~ 84 (171)
T d1obba1 71 DDVIIDADFVINTA 84 (171)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhcccCCCeEeeec
Confidence 5689999999875
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.21 E-value=1.5e-06 Score=74.66 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=64.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.||+|||+ |.+|.++|..++..|. +++++|+++...+. . +.... .... .....+...++++++
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~-------Dl~~~-~~~~-----~~~~~~~~~~~~~~~ 66 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-A-------DLSHI-ETRA-----TVKGYLGPEQLPDCL 66 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-H-------HHTTS-SSSC-----EEEEEESGGGHHHHH
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-H-------HHhhh-hhhc-----CCCeEEcCCChHHHh
Confidence 38999996 9999999999999987 79999998653221 1 11100 0000 000122223335678
Q ss_pred CCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 225 ~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
++||+||.+.- .|..+.+++.+++.++.+ +++++..|.
T Consensus 67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtN 118 (144)
T d1mlda1 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISN 118 (144)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSS
T ss_pred CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecC
Confidence 99999998752 234467778888888854 555544333
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.09 E-value=1.9e-06 Score=77.50 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=38.6
Q ss_pred eEEEEE-cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAIL-GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VI-G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+||+|| |+|.||.+||..|+++||+|++|+|++++++...+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i 44 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY 44 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 589999 7899999999999999999999999999988766544
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=2.1e-06 Score=75.47 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=46.7
Q ss_pred eEEEEEcCccchHHHHHHHHh--C----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cc
Q 008576 148 KKVAILGGGLMGSGIATALIL--S----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD 220 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~--~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~ 220 (561)
+||+|||+|..|.+++..... . +.+++++|+++++++.... + .+...... ..+..+ ++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~---~~~~~~~~-----------~~~~~t~~~ 65 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-F---VKRLVKDR-----------FKVLISDTF 65 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-H---HHHHHTTS-----------SEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-H---HHhhhccC-----------ceEEEecCc
Confidence 489999999999888854322 1 3589999999998764321 1 11111111 123333 34
Q ss_pred ccccCCCCEEEEec
Q 008576 221 YESFKDVDMVIEAI 234 (561)
Q Consensus 221 ~~~l~~aDlVieav 234 (561)
++++++||+||.++
T Consensus 66 ~~~l~~aDvVVita 79 (162)
T d1up7a1 66 EGAVVDAKYVIFQF 79 (162)
T ss_dssp HHHHTTCSEEEECC
T ss_pred ccccCCCCEEEEec
Confidence 57799999999986
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=4.4e-06 Score=71.67 Aligned_cols=95 Identities=20% Similarity=0.300 Sum_probs=60.6
Q ss_pred eEEEEEc-CccchHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILG-GGLMGSGIATALILS---NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+||+||| +|.+|.++|..|+.. +.++.++|+++.....+ ++-... .... ....+..++++++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a-------~Dl~h~-~~~~------~~~~~~~~~~~~~ 66 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVA-------VDLSHI-PTAV------KIKGFSGEDATPA 66 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHH-------HHHHTS-CSSC------EEEEECSSCCHHH
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHH-------HHHHCC-cccc------CCcEEEcCCCccc
Confidence 5999999 599999999988643 46899999875322111 111110 0000 0112233556788
Q ss_pred cCCCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCc
Q 008576 224 FKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 224 l~~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
++++|+||.+. | .|..+.+++.+++.+++++..
T Consensus 67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~ai 113 (145)
T d2cmda1 67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113 (145)
T ss_dssp HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcE
Confidence 99999999886 2 134467778888888875544
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.98 E-value=1.7e-05 Score=69.58 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=47.8
Q ss_pred ceEEEEEcCccchHHHH--HHHHhC-C---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 147 VKKVAILGGGLMGSGIA--TALILS-N---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA--~~la~~-G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
-.||+|||+|..|.+.+ ..+... . -+|+++|+++++++.....+..... .. + ...++..++|
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~-~~--~---------~~~~~~~~~d 70 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIR-EK--A---------PDIEFAATTD 70 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHH-HH--C---------TTSEEEEESC
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHH-Hh--C---------CCcceEecCC
Confidence 35999999999987644 233222 2 3899999999987643322222111 11 1 0123455556
Q ss_pred c-cccCCCCEEEEec
Q 008576 221 Y-ESFKDVDMVIEAI 234 (561)
Q Consensus 221 ~-~~l~~aDlVieav 234 (561)
. +++++||+||.++
T Consensus 71 ~~eal~~AD~Vvita 85 (167)
T d1u8xx1 71 PEEAFTDVDFVMAHI 85 (167)
T ss_dssp HHHHHSSCSEEEECC
T ss_pred hhhccCCCCEEEECC
Confidence 5 6799999999997
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.94 E-value=1.9e-06 Score=77.05 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=71.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|+.||+++.. + ......+++ .+++
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------~------------~~~~~~~l~ell~~ 92 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------G------------PWRFTNSLEEALRE 92 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------S------------SSCCBSCSHHHHTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc------------------c------------ceeeeechhhhhhc
Confidence 68999999999999999999999999999987521 1 011233453 4899
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |+|. +.-..+...+.
T Consensus 93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailI-N~~RG~ivd~~aL~~aL~ 143 (181)
T d1qp8a1 93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFV-NVGRAEVLDRDGVLRILK 143 (181)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEE-ECSCGGGBCHHHHHHHHH
T ss_pred cchhhcccccccccccccccceeeeccccceEE-eccccccccchhhhhhcc
Confidence 999999999887766555566777789999886 4443 34456666553
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.94 E-value=6.4e-06 Score=69.63 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=60.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc--ccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--SFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~l~ 225 (561)
|++.|+|+|.+|..+|..|.+.|++|+++|.|++.++++. ..+.. ...+...-...++ .+.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-----------~~~~~------~~~gd~~~~~~l~~a~i~ 63 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYATH------AVIANATEENELLSLGIR 63 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-----------TTCSE------EEECCTTCTTHHHHHTGG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-----------HhCCc------ceeeecccchhhhccCCc
Confidence 5789999999999999999999999999999999887643 11210 0000000001111 267
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+||.||.+++++... ..+...+.+..+...|++
T Consensus 64 ~a~~vi~~~~~~~~~-~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 64 NFEYVIVAIGANIQA-STLTTLLLKELDIPNIWV 96 (134)
T ss_dssp GCSEEEECCCSCHHH-HHHHHHHHHHTTCSEEEE
T ss_pred cccEEEEEcCchHHh-HHHHHHHHHHcCCCcEEe
Confidence 899999999876443 222333444444445554
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.91 E-value=2.8e-05 Score=68.43 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=67.6
Q ss_pred eEEEEEcCccchHH--HHHHHHhC----CCcEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 148 KKVAILGGGLMGSG--IATALILS----NYPVILKEVNEKFLEA-GIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 148 ~kV~VIG~G~mG~~--iA~~la~~----G~~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
.||+|||+|..|.+ ++..+... +-+++++|++++..+. +........ ....+. .-++..++|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~--~~~~~~---------~~~~~~~td 70 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRM--VEKAGV---------PIEIHLTLD 70 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHH--HHHTTC---------CCEEEEESC
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHH--HHhcCC---------CceeeecCC
Confidence 58999999987753 44444432 2389999998865321 111110000 011110 113444555
Q ss_pred c-cccCCCCEEEEeccC----------------------------------ChhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 221 Y-ESFKDVDMVIEAIIE----------------------------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 221 ~-~~l~~aDlVieav~e----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
. +++++||+||.++.- +..+.+++.+++.+++ |++++...|...
T Consensus 71 ~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPv 149 (169)
T d1s6ya1 71 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPA 149 (169)
T ss_dssp HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred chhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChH
Confidence 4 668999999999831 2334677888898886 456554333222
Q ss_pred C-HHHHHhhccCccceecc
Q 008576 266 D-LNLIGERTYSKDRIVGA 283 (561)
Q Consensus 266 ~-~~~l~~~~~~~~r~ig~ 283 (561)
. ++........+.|++|+
T Consensus 150 dv~t~~~~k~~p~~kviGl 168 (169)
T d1s6ya1 150 GMVTEAVLRYTKQEKVVGL 168 (169)
T ss_dssp HHHHHHHHHHCCCCCEEEC
T ss_pred HHHHHHHHHHCCCCCEEee
Confidence 2 23322222334577774
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.83 E-value=0.0001 Score=61.85 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=61.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccc---c--
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-- 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-- 221 (561)
+||.|+|+|.+|..+|..|...|++|+++|.|++.++...++ .+. .-+.. .++ +
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----------~~~----------~vi~Gd~~~~~~l~~ 60 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDA----------LVINGDCTKIKTLED 60 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSS----------EEEESCTTSHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----------hhh----------hhccCcccchhhhhh
Confidence 589999999999999999999999999999999988764321 110 00110 011 1
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
..+.++|.++.+++++. . .-+...+.+...+..+|+...+
T Consensus 61 ~~i~~a~~vv~~t~~d~-~-N~~~~~~~k~~~~~~iI~~~~~ 100 (132)
T d1lssa_ 61 AGIEDADMYIAVTGKEE-V-NLMSSLLAKSYGINKTIARISE 100 (132)
T ss_dssp TTTTTCSEEEECCSCHH-H-HHHHHHHHHHTTCCCEEEECSS
T ss_pred cChhhhhhhcccCCcHH-H-HHHHHHHHHHcCCceEEEEecC
Confidence 23688999998877542 2 2233334444556666654333
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.82 E-value=9.8e-06 Score=71.69 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=36.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|||+|.||..+|..|+++||+|+++||+.++++..
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l 41 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL 41 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence 699999999999999999999999999999999987763
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.72 E-value=4.4e-05 Score=66.03 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=61.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
.||+|||+ |.+|.++|..|+..+. +++++|.++..... . .++......... ....+...+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~-~-----~l~~~~~~~~~~------~~~~~~~~~ 71 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVL-D-----GVLMELQDCALP------LLKDVIATD 71 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHH-H-----HHHHHHHHTCCT------TEEEEEEES
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhh-h-----hhhhhhcccccc------cccccccCc
Confidence 49999996 9999999999987543 47788876543211 1 111111111110 112233333
Q ss_pred -cccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCcee
Q 008576 220 -DYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 220 -~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii 258 (561)
++++++++|+||.+.- .+..+.+++..++.++++.+.++
T Consensus 72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~i 125 (154)
T d5mdha1 72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKV 125 (154)
T ss_dssp CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEE
Confidence 4567999999998761 12356777778888888877643
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.71 E-value=8.1e-06 Score=73.79 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=69.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|..||+....... ..+ . ...++ +.+++
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~~~-------------~-~~~~l~~~l~~ 96 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------KKG-------------Y-YVDSLDDLYKQ 96 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------C-BCSCHHHHHHH
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------cce-------------e-eeccccccccc
Confidence 68999999999999999999999999999976543111 011 1 12234 34788
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~ 274 (561)
||+|+.++|-+.+.+.-+-++..+.++++++++ |+|. +.-..+.+.+
T Consensus 97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL 146 (197)
T d1j4aa1 97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIV-NVSRGPLVDTDAVIRGL 146 (197)
T ss_dssp CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHH
T ss_pred cccccccCCccccccccccHHHHhhhCCccEEE-ecCchhhhhhHHHHHHH
Confidence 999999999777665544456666788898775 5553 3344555555
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.65 E-value=8.8e-06 Score=73.33 Aligned_cols=102 Identities=17% Similarity=0.063 Sum_probs=71.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|..||+....-... .. .+....++++ ++.
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~~-------------~~~~~~~l~~ll~~ 104 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------AL-------------GLQRVSTLQDLLFH 104 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------HH-------------TCEECSSHHHHHHH
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccchh------------hh-------------ccccccchhhcccc
Confidence 599999999999999999999999999999864321110 00 1222345544 689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |+|. +.-..+.+.+.
T Consensus 105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~ 155 (193)
T d1mx3a1 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV-NTARGGLVDEKALAQALK 155 (193)
T ss_dssp CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEeecccccchhhhhHHHHhccCCCCeEE-ecCCceEEcHHHHHHHHH
Confidence 999999999776665544456667788998775 5653 33445655553
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.59 E-value=1.3e-05 Score=72.19 Aligned_cols=115 Identities=14% Similarity=0.050 Sum_probs=76.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
-++|+|||.|.+|..+|..+..-|.+|..||+......... . .......+++ .++
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~-------------~~~~~~~~l~~ll~ 102 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-----------S-------------YQATFHDSLDSLLS 102 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-----------H-------------HTCEECSSHHHHHH
T ss_pred ccceEEeecccchHHHHHHHHhhccccccccccccccchhh-----------c-------------ccccccCCHHHHHh
Confidence 37999999999999999999999999999998654222100 0 0111223443 478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhccC-ccceeccccc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~-~~r~ig~h~~ 286 (561)
.||+|+.++|-+.+.+.-+=++..+.++++++++ |+|. +.-..+.+.+.. .-...++.-|
T Consensus 103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~g~i~~a~lDV~ 166 (191)
T d1gdha1 103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAALEAGRLAYAGFDVF 166 (191)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred hCCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHHHcCCceEEEEECC
Confidence 8999999999877765545456677789999775 6664 333455555532 3333444433
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.59 E-value=7e-05 Score=65.07 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=57.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
-++|.|||+|.||..++..|...|. +|++++|+.++++...+.+ + .......++ +.+
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~-----------~~~~~~~~~~~~l 82 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------G-----------GEAVRFDELVDHL 82 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------T-----------CEECCGGGHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------h-----------cccccchhHHHHh
Confidence 4699999999999999999999998 6999999988876533210 1 011111222 457
Q ss_pred CCCCEEEEeccCC-hhhHHHHHHHHHhh
Q 008576 225 KDVDMVIEAIIEN-VSLKQQIFADLEKY 251 (561)
Q Consensus 225 ~~aDlVieav~e~-~~~k~~v~~~l~~~ 251 (561)
.++|+||.|+..+ +-+.++.++...+.
T Consensus 83 ~~~Divi~atss~~~ii~~~~i~~~~~~ 110 (159)
T d1gpja2 83 ARSDVVVSATAAPHPVIHVDDVREALRK 110 (159)
T ss_dssp HTCSEEEECCSSSSCCBCHHHHHHHHHH
T ss_pred ccCCEEEEecCCCCccccHhhhHHHHHh
Confidence 8999999999643 23455666554433
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.57 E-value=0.00031 Score=61.76 Aligned_cols=104 Identities=14% Similarity=0.190 Sum_probs=64.1
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-
Q 008576 146 RVKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT- 216 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (561)
+..||+|+|+ |.+|.+++..|+.... ++.++|++...-. .+. +......... .....+.
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~--l~g----~~mdl~d~a~------~~~~~~~~ 90 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQA--LEG----VAMELEDSLY------PLLREVSI 90 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH--HHH----HHHHHHTTTC------TTEEEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccch--hcc----hhhhhccccc------ccccCccc
Confidence 3469999996 9999999999987532 5667777653211 110 0001111110 0112333
Q ss_pred ccccccccCCCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCceeeec
Q 008576 217 GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 217 ~~~~~~~l~~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
.++++++++++|+||... | .+..+.+++.+.+.++++++++|+..
T Consensus 91 ~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv 149 (175)
T d7mdha1 91 GIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVV 149 (175)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred cccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 334467899999999876 1 23446777778899999888855433
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.56 E-value=4e-05 Score=72.33 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=52.9
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
||+|| |++.||.++|..|++.|++|++.|++++.+++..+.+++.-. ..+..+..+++++....+.+. +.+
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~-----~~~ 77 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV-----ERY 77 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH-----HHT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH-----HHh
Confidence 78877 557899999999999999999999999998877655432100 001122334444444333221 345
Q ss_pred CCCCEEEEec
Q 008576 225 KDVDMVIEAI 234 (561)
Q Consensus 225 ~~aDlVieav 234 (561)
...|++|.+.
T Consensus 78 g~iDilVnnA 87 (257)
T d2rhca1 78 GPVDVLVNNA 87 (257)
T ss_dssp CSCSEEEECC
T ss_pred CCCCEEEecc
Confidence 6778888765
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=7.1e-05 Score=64.59 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=66.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|+|+|.|.+|.++|..+...|.+|+++|+++-..-++. -.| .....-.+.+..+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-----------~dG-------------~~v~~~~~a~~~a 80 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA-----------MEG-------------YEVTTMDEACQEG 80 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEECCHHHHTTTC
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh-----------cCc-------------eEeeehhhhhhhc
Confidence 6899999999999999999999999999999995432211 112 1212222457889
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHh
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE 272 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~ 272 (561)
|+||.|.-..-.+.. +-.+.+++++|++..++. +.+..+.+
T Consensus 81 divvtaTGn~~vI~~----eh~~~MKdgaIL~N~Ghfd~EId~~~L~~ 124 (163)
T d1li4a1 81 NIFVTTTGCIDIILG----RHFEQMKDDAIVCNIGHFDVEIDVKWLNE 124 (163)
T ss_dssp SEEEECSSCSCSBCH----HHHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred cEEEecCCCccchhH----HHHHhccCCeEEEEeccccceecHHHHhh
Confidence 999988754322333 334457889998765543 55666654
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.51 E-value=1.9e-05 Score=75.00 Aligned_cols=87 Identities=9% Similarity=0.068 Sum_probs=54.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHH--HHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTA--RQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAP 78 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A--~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (561)
|++||++++|+||+++||||+||+.+++...+ .+++++++.... ..
T Consensus 173 llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~~~~--------------------------------~~ 220 (266)
T d1pjha_ 173 CLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVK--------------------------------GL 220 (266)
T ss_dssp HHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHT--------------------------------TC
T ss_pred hhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHHHHH--------------------------------cC
Confidence 57899999999999999999999876554332 234444443100 01
Q ss_pred CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccC
Q 008576 79 NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (561)
Q Consensus 79 ~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~ 131 (561)
++.+...+|+.++......++.+ .+.|..+++..|++++..
T Consensus 221 ~~~s~~~~K~~l~~~~~~~~~~~------------~~~e~~~~~~~f~~~~p~ 261 (266)
T d1pjha_ 221 YLPSCLGMKKLLKSNHIDAFNKA------------NSVEVNESLKYWVDGEPL 261 (266)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHH------------HHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHhhhHHHHHHH------------HHHHHHHHHHHHHCCCCh
Confidence 12356667777776544333333 345667777888877643
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.42 E-value=1.4e-05 Score=72.39 Aligned_cols=99 Identities=17% Similarity=0.107 Sum_probs=69.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|+.||+...... . .... ..+++ .++.
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~------------------~---------~~~~-~~~l~~l~~~ 97 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD------------------H---------PDFD-YVSLEDLFKQ 97 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC------------------C---------TTCE-ECCHHHHHHH
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhh------------------h---------cchh-HHHHHHHHHh
Confidence 6899999999999999999999999999998643210 0 0111 12343 3688
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |+|. +.-..+.+.+.
T Consensus 98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~vvde~aL~~aL~ 148 (199)
T d1dxya1 98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NTARPNLIDTQAMLSNLK 148 (199)
T ss_dssp CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred cccceeeecccccccccccHHHhhccCCceEEE-ecccHhhhhhHHHHHHHh
Confidence 999999999877765544456667788899775 5653 33445655553
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=4e-05 Score=68.39 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=71.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||.|.+|..+|..+..-|.+|+.||+........ .. .+. ..++ +.++
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~------------~~-------------~~~-~~~l~ell~ 97 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA------------QL-------------GIE-LLSLDDLLA 97 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH------------HH-------------TCE-ECCHHHHHH
T ss_pred ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHh------------hc-------------Cce-eccHHHHHh
Confidence 3689999999999999999998999999999875432210 00 111 1233 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
.||+|+.++|-+.+.+.-+=++....++++++++ |+|. +.-..+.+.+.
T Consensus 98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI-N~sRG~iVde~aL~~aL~ 149 (184)
T d1ygya1 98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIV-NAARGGLVDEAALADAIT 149 (184)
T ss_dssp HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE-EecchhhhhhHHHHHHHh
Confidence 9999999999877765544456677789998775 5553 33456666654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.39 E-value=4.1e-05 Score=68.65 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=72.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-++|+|||.|.+|..+|..+..-|.+|..||+....-.... .. .+....++ +.++
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~~-------------~~~~~~~l~~~l~ 99 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------EL-------------NLTWHATREDMYP 99 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HH-------------TCEECSSHHHHGG
T ss_pred ccceeeccccccchhhhhhhhccCceEEEEeeccccccccc-----------cc-------------cccccCCHHHHHH
Confidence 36999999999999999999999999999998532211100 00 12223344 4478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
+||+|+.++|-+.+.+.-+=++..+.++++++|+ |+|. +.-..+...+.
T Consensus 100 ~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~ivd~~aL~~aL~ 151 (188)
T d2naca1 100 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALE 151 (188)
T ss_dssp GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred hccchhhcccccccchhhhHHHHHHhCCCCCEEE-ecCchhhhhHHHHHHHHh
Confidence 9999999999777665555566777889998775 5653 34456666554
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.36 E-value=0.00058 Score=63.91 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=53.7
Q ss_pred eEEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS--RVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~--~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
|||+|| |+ +.+|.++|..|++.|++|++.|++++.+++..+.+++.-.+ .+..+..+++++.+..+.+. +.
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~ 75 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR-----KT 75 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH-----HH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH-----HH
Confidence 588777 55 77999999999999999999999999988766554321100 01223334444444333221 34
Q ss_pred cCCCCEEEEec
Q 008576 224 FKDVDMVIEAI 234 (561)
Q Consensus 224 l~~aDlVieav 234 (561)
+...|++|.+.
T Consensus 76 ~g~iDilVnnA 86 (255)
T d1gega_ 76 LGGFDVIVNNA 86 (255)
T ss_dssp TTCCCEEEECC
T ss_pred hCCccEEEecc
Confidence 57788888765
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.30 E-value=6e-05 Score=70.80 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=52.9
Q ss_pred eEEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
.||+|| |+ +.+|.++|..|++.|++|+++|++++.+++..+.+++.-. ..+..+..+++++.+..+.+. +.
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~-----~~ 84 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL-----TE 84 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH-----HH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH-----Hh
Confidence 477777 55 7899999999999999999999999998876655432100 001122333444444333221 34
Q ss_pred cCCCCEEEEec
Q 008576 224 FKDVDMVIEAI 234 (561)
Q Consensus 224 l~~aDlVieav 234 (561)
....|++|.+.
T Consensus 85 ~g~iDilvnna 95 (251)
T d2c07a1 85 HKNVDILVNNA 95 (251)
T ss_dssp CSCCCEEEECC
T ss_pred cCCceeeeecc
Confidence 56788888775
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=2.7e-05 Score=69.91 Aligned_cols=100 Identities=22% Similarity=0.213 Sum_probs=71.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
-++|+|||.|.+|..+|..+..-|.+|+.||+...... .......+++ .++
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~ 95 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN 95 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence 36999999999999999999999999999998643110 0011122343 368
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
.||+|+.++|-+.+.+.-+=++..+.++++++++ |+|. +.-.++.+.+.
T Consensus 96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~lvde~aL~~aL~ 147 (188)
T d1sc6a1 96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI-NASRGTVVDIPALADALA 147 (188)
T ss_dssp HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-ECSCSSSBCHHHHHHHHH
T ss_pred hccceeecccCCcchhhhccHHHHhhCCCCCEEE-EcCcHHhhhhHHHHHHHH
Confidence 8999999999877766555566777788999775 5553 34456666653
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=3.7e-05 Score=69.81 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=36.0
Q ss_pred ccceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008576 145 RRVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE 184 (561)
Q Consensus 145 ~~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (561)
|.|+||+|+|+ |.+|..++..|+++|++|++++|+++++.
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~ 41 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence 46899999995 99999999999999999999999987643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.0001 Score=68.76 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=51.7
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
|++|| | ++.||.++|..|++.|++|++.|++++.+++..+.+.... ..+..+..++++..+..+.+. +....
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~-----~~~g~ 78 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANG-KGLMLNVTDPASIESVLEKIR-----AEFGE 78 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGE-EEEECCTTCHHHHHHHHHHHH-----HHTCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCC-cEEEEEecCHHHhhhhhhhhh-----cccCC
Confidence 56666 5 4789999999999999999999999998877554331100 011123334444444333222 34567
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|.+.
T Consensus 79 iDilVnnA 86 (243)
T d1q7ba_ 79 VDILVNNA 86 (243)
T ss_dssp CSEEEECC
T ss_pred cceehhhh
Confidence 89999775
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.17 E-value=0.00026 Score=60.94 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=60.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
.||+|||+ |.+|..+|..|+..++ ...+++.+ .+.++... ........ .....+..
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~------~~~~~~~~ 70 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVV--------MELEDCAF------PLLAGLEA 70 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH--------HHHHTTTC------TTEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCch--------hhhhcccc------cccccccc
Confidence 59999997 9999999999998754 12344433 33332211 01111100 01122222
Q ss_pred -cccccccCCCCEEEEec--cC------------ChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 218 -VLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 218 -~~~~~~l~~aDlVieav--~e------------~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+.++++++++|+||.+. |. +..+.+++..++.++++++++|+..|
T Consensus 71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 33457899999999876 11 34466777778888888888654333
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00048 Score=64.57 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=52.9
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH----HHHHcCCCCHHHHHhhhcccccccccc
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ----SRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~----~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
||++| |++.+|.++|..|++.|++|++++++++++++..+.+++.-. ..+..+..+++++.+..+.+. +
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~-----~ 85 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR-----S 85 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH-----H
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH-----H
Confidence 66666 458999999999999999999999999998887655433210 011223334444444333222 3
Q ss_pred ccCCCCEEEEec
Q 008576 223 SFKDVDMVIEAI 234 (561)
Q Consensus 223 ~l~~aDlVieav 234 (561)
.+...|++|.+.
T Consensus 86 ~~g~iD~lVnnA 97 (257)
T d1xg5a_ 86 QHSGVDICINNA 97 (257)
T ss_dssp HHCCCSEEEECC
T ss_pred hcCCCCEEEecc
Confidence 356778888776
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.14 E-value=0.00036 Score=61.17 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=51.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l~ 225 (561)
-++|.|+|+|.++.+++..|...+.+|++++|+.++++...+.+. .. ..+.. ..+...+.
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~------------~~~~~~~~~~~~~~ 78 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PY------------GNIQAVSMDSIPLQ 78 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GG------------SCEEEEEGGGCCCS
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hc------------cccchhhhcccccc
Confidence 368999999999999999999988899999999988776432210 00 11111 11222468
Q ss_pred CCCEEEEeccCC
Q 008576 226 DVDMVIEAIIEN 237 (561)
Q Consensus 226 ~aDlVieav~e~ 237 (561)
++|+||.|+|-.
T Consensus 79 ~~diiIN~tp~g 90 (171)
T d1p77a1 79 TYDLVINATSAG 90 (171)
T ss_dssp CCSEEEECCCC-
T ss_pred ccceeeeccccc
Confidence 899999999844
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.13 E-value=0.00033 Score=65.86 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=50.6
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
|++|| |+ +.||.++|..|++.|++|++.|++++.+++..+.+...-. ..+..+..+++++.+....+. +.+
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~~ 83 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVA-----NHF 83 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH-----HHT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHH-----HHh
Confidence 55555 55 7799999999999999999999999998887655432100 001122233444443332221 234
Q ss_pred C-CCCEEEEec
Q 008576 225 K-DVDMVIEAI 234 (561)
Q Consensus 225 ~-~aDlVieav 234 (561)
. ..|++|.+.
T Consensus 84 ~~~idilvnnA 94 (259)
T d2ae2a_ 84 HGKLNILVNNA 94 (259)
T ss_dssp TTCCCEEEECC
T ss_pred CCCceEEEECC
Confidence 4 478888775
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.12 E-value=0.00036 Score=59.72 Aligned_cols=87 Identities=17% Similarity=0.086 Sum_probs=62.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+++.|+|-|-.|.++|+.+...|..|+++++||-..-++ .++-.+..+-.+.++.+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a 79 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG 79 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence 689999999999999999999999999999999543221 11222222223568999
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
|++|-++.....+..+ -...+++++|++...
T Consensus 80 Di~vTaTGn~~vI~~~----h~~~MKdgaIl~N~G 110 (163)
T d1v8ba1 80 DFFITCTGNVDVIKLE----HLLKMKNNAVVGNIG 110 (163)
T ss_dssp SEEEECCSSSSSBCHH----HHTTCCTTCEEEECS
T ss_pred cEEEEcCCCCccccHH----HHHHhhCCeEEEecc
Confidence 9999998754333333 344578899887544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=6.8e-05 Score=70.58 Aligned_cols=81 Identities=14% Similarity=0.244 Sum_probs=51.7
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
|++|| |++.+|.++|..|++.|++|++.|++++.+++..+.+++.-. ..+..+..+++++.+..+.+. +.+
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~-----~~~ 86 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAI-----SKL 86 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH-----HHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHH-----HHc
Confidence 66666 558899999999999999999999999998876655432100 001122233344433332221 235
Q ss_pred CCCCEEEEec
Q 008576 225 KDVDMVIEAI 234 (561)
Q Consensus 225 ~~aDlVieav 234 (561)
...|++|.+.
T Consensus 87 g~iDilvnnA 96 (255)
T d1fmca_ 87 GKVDILVNNA 96 (255)
T ss_dssp SSCCEEEECC
T ss_pred CCCCEeeeCC
Confidence 6678888765
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=97.10 E-value=9.8e-05 Score=69.64 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=52.1
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH---HHHcCCCCHHHHHhhhccccccccccc
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS---RVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~---~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
|+++| |+ +.+|.++|..|++.|++|++.|++.+.+++..+.+.+.... .+..+..+++++++....+. +.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~ 84 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID-----AD 84 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH-----HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH-----HH
Confidence 66655 55 77999999999999999999999998877766554332210 01223334444444333221 34
Q ss_pred cCCCCEEEEec
Q 008576 224 FKDVDMVIEAI 234 (561)
Q Consensus 224 l~~aDlVieav 234 (561)
+...|++|.+.
T Consensus 85 ~g~iDilVnnA 95 (260)
T d1h5qa_ 85 LGPISGLIANA 95 (260)
T ss_dssp SCSEEEEEECC
T ss_pred hCCCcEecccc
Confidence 56788888775
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.10 E-value=0.00032 Score=60.53 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=61.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~~l~ 225 (561)
.||.|||+|..|.+-+......|..|+++|.+.+++++.... + .... ..+.. ...+ +.++
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~----~----~~~~----------~~~~~~~~~l~~~~~ 94 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL----F----GSRV----------ELLYSNSAEIETAVA 94 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----H----GGGS----------EEEECCHHHHHHHHH
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh----h----cccc----------eeehhhhhhHHHhhc
Confidence 599999999999999999999999999999999988764321 1 1100 00000 0112 3478
Q ss_pred CCCEEEEec--cCC---hhhHHHHHHHHHhhcCCCceeeec
Q 008576 226 DVDMVIEAI--IEN---VSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 226 ~aDlVieav--~e~---~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
+||+||-++ |-. .-+. ++..+.++++++|++.
T Consensus 95 ~aDivI~aalipG~~aP~lIt----~~mv~~Mk~GSVIVDv 131 (168)
T d1pjca1 95 EADLLIGAVLVPGRRAPILVP----ASLVEQMRTGSVIVDV 131 (168)
T ss_dssp TCSEEEECCCCTTSSCCCCBC----HHHHTTSCTTCEEEET
T ss_pred cCcEEEEeeecCCcccCeeec----HHHHhhcCCCcEEEEe
Confidence 999999987 211 1122 3445567889988753
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00053 Score=59.98 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=36.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+|..+.+++..|.+.|.+|++++|+.++.+...
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~ 58 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA 58 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence 6899999999999999999999999999999998876533
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.08 E-value=0.00064 Score=59.28 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=35.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (561)
++|.|||+|.++.+++..|.+.|. +|++++|+.++.+.
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~ 56 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQY 56 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHH
Confidence 689999999999999999999997 89999999987665
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.05 E-value=0.00021 Score=66.57 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=50.1
Q ss_pred EEEE-EcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAI-LGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~V-IG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
|++| .|+ +.+|.++|..|++.|++|++.|++++.+++..+.+.. ..+..+..+++++++....+. +.+..
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~---~~~~~Dv~~~~~v~~~~~~~~-----~~~g~ 77 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGA---HPVVMDVADPASVERGFAEAL-----AHLGR 77 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTC---EEEECCTTCHHHHHHHHHHHH-----HHHSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC---eEEEEecCCHHHHHHHHHHHH-----HhcCC
Confidence 4554 465 7799999999999999999999999988775533210 011223334444444333222 33567
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|.+.
T Consensus 78 iDilVnnA 85 (242)
T d1ulsa_ 78 LDGVVHYA 85 (242)
T ss_dssp CCEEEECC
T ss_pred ceEEEECC
Confidence 88888765
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.00 E-value=0.00075 Score=58.13 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=64.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||-|.-|.+-|..|..+|.+|++--+.... .+++ .+.| ....+-.++++.
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A-----------~~~G-------------f~v~~~~eA~~~ 72 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHG-------------LKVADVKTAVAA 72 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTT-------------CEEECHHHHHHT
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHH-----------hhhc-------------cccccHHHHhhh
Confidence 68999999999999999999999999987775432 2222 1233 122222356889
Q ss_pred CCEEEEeccCChhhHHHHHH-HHHhhcCCCceee
Q 008576 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILA 259 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~ 259 (561)
+|+|+..+|+ +...++++ ++.++++++..+.
T Consensus 73 aDiim~L~PD--~~q~~vy~~~I~p~lk~g~~L~ 104 (182)
T d1np3a2 73 ADVVMILTPD--EFQGRLYKEEIEPNLKKGATLA 104 (182)
T ss_dssp CSEEEECSCH--HHHHHHHHHHTGGGCCTTCEEE
T ss_pred cCeeeeecch--HHHHHHHHHhhhhhcCCCcEEE
Confidence 9999999993 46668885 7999999998764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=96.99 E-value=0.00042 Score=65.14 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=95.9
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
|++|| |+ +.||.++|..|++.|++|++.|++++.+++..+.+++.-. ..+..+..+++++.+....+. +.+
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~~ 80 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVV-----RDF 80 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHH-----HHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH-----HHh
Confidence 45555 65 7799999999999999999999999998876654432100 001122233343333332221 235
Q ss_pred CCCCEEEEeccC----------Chh---------------hHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccc
Q 008576 225 KDVDMVIEAIIE----------NVS---------------LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDR 279 (561)
Q Consensus 225 ~~aDlVieav~e----------~~~---------------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r 279 (561)
...|++|.+.-- +.+ +.+.++..+.+ -..+.|| |+|+. ....+.|
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~-~~~G~II--~isS~-----~~~~~~~-- 150 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMIT-QNYGRIV--NTASM-----AGVKGPP-- 150 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEE--EECCH-----HHHSCCT--
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhh-hcCCCCC--eeech-----hhccCCc--
Confidence 677888876411 001 11111111111 1223333 11111 0000000
Q ss_pred eecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccchhhhHHHHHHHHHHHHHH-c--CCCHH
Q 008576 280 IVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRMFFPYTQAAFLLVE-R--GTDLY 355 (561)
Q Consensus 280 ~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i~nrl~~~~~~ea~~l~~-~--G~~~~ 355 (561)
..+ ....++..+...++.+...++..-|.|+. +||++-..++.....+...... + ..+++
T Consensus 151 ------~~~----------~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 214 (260)
T d1zema1 151 ------NMA----------AYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPK 214 (260)
T ss_dssp ------TBH----------HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHH
T ss_pred ------chH----------HHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHH
Confidence 001 11123556677777888889888888875 7999988776655444333222 2 12666
Q ss_pred HHHHHHH
Q 008576 356 LIDRAIT 362 (561)
Q Consensus 356 ~ID~a~~ 362 (561)
++-..+.
T Consensus 215 ~~~~~~~ 221 (260)
T d1zema1 215 VVAQQMI 221 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655554
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.92 E-value=0.0014 Score=51.36 Aligned_cols=37 Identities=32% Similarity=0.564 Sum_probs=32.9
Q ss_pred ccceEEEEEcCccch-HHHHHHHHhCCCcEEEEeCCHH
Q 008576 145 RRVKKVAILGGGLMG-SGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG-~~iA~~la~~G~~V~l~d~~~~ 181 (561)
.+++||-|||.|.+| +++|+.|...|++|...|....
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~ 43 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG 43 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 457899999999999 7789999999999999998743
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00092 Score=62.06 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=48.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
|++.|.|+ +.+|.++|..|++.|++|++.|++++.+++..+.+... ..+..+..+++.+++.. +.+..
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~--~~~~~Dv~d~~~v~~~~---------~~~g~ 76 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI--EPVCVDLGDWEATERAL---------GSVGP 76 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTC--EEEECCTTCHHHHHHHH---------TTCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCC--eEEEEeCCCHHHHHHHH---------HHhCC
Confidence 35555565 88999999999999999999999999887654332110 00111222333332221 34577
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|.+.
T Consensus 77 iDilVnnA 84 (244)
T d1pr9a_ 77 VDLLVNNA 84 (244)
T ss_dssp CCEEEECC
T ss_pred ceEEEecc
Confidence 89999876
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.91 E-value=0.002 Score=59.59 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=33.3
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
++.|.|+ +.+|.++|..|++.|++|++.|++++.+++..+
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4555565 789999999999999999999999988776543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.88 E-value=0.0049 Score=53.20 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=46.7
Q ss_pred eEEEEEcCccchHH-HHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c
Q 008576 148 KKVAILGGGLMGSG-IATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~-iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (561)
.||+|||+|.||.. ....+... +.+++++|.+++.++...+. .+.....+++++ +
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll 59 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------------------YRVSATCTDYRDVL 59 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------------------TTCCCCCSSTTGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------------------cccccccccHHHhc
Confidence 48999999999976 55566555 56888999999887653321 111112344443 2
Q ss_pred -CCCCEEEEeccCChh
Q 008576 225 -KDVDMVIEAIIENVS 239 (561)
Q Consensus 225 -~~aDlVieav~e~~~ 239 (561)
.+.|+|+.|+|.+..
T Consensus 60 ~~~iD~V~I~tp~~~H 75 (167)
T d1xeaa1 60 QYGVDAVMIHAATDVH 75 (167)
T ss_dssp GGCCSEEEECSCGGGH
T ss_pred ccccceeccccccccc
Confidence 368999999986543
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.83 E-value=0.0013 Score=58.75 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=62.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhCC------CcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSN------YPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G------~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (561)
-++||+|||-|.-|.+-|..|..+| ..|++-=+.. ...+++. +.|.-.. .....
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v~--------~~~v~ 103 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSEE--------NGTLG 103 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCGG--------GTCEE
T ss_pred CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCccC--------CCccc
Confidence 3579999999999999999999965 4465543322 2222222 3332110 01111
Q ss_pred ccccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 219 LDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 219 ~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+-.++++.+|+|+..+|+ +...++++++.++++++..+.
T Consensus 104 ~v~EAv~~ADiVmiLlPD--e~Q~~vy~~I~p~Lk~G~~L~ 142 (226)
T d1qmga2 104 DMWETISGSDLVLLLISD--SAQADNYEKVFSHMKPNSILG 142 (226)
T ss_dssp EHHHHHHTCSEEEECSCH--HHHHHHHHHHHHHSCTTCEEE
T ss_pred CHHHHHhhCCEEEEecch--HHHHHHHHHHHHhcCCCceee
Confidence 122567899999999994 456678899999999998764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.83 E-value=0.00092 Score=58.75 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=50.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|.|||+|.++.+++..|.+.| +|++++|+.++++...+.+..... . ... ..+. ..++ ....+
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~----~---~~~------~~~~-~~~~~~~~~~ 83 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN----K---KFG------EEVK-FSGLDVDLDG 83 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT----C---CHH------HHEE-EECTTCCCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhc----h---hhh------hhhh-hhhhhhccch
Confidence 58999999999999999998777 999999999998875544332210 0 000 0111 1222 24678
Q ss_pred CCEEEEeccC
Q 008576 227 VDMVIEAIIE 236 (561)
Q Consensus 227 aDlVieav~e 236 (561)
+|+||.|+|-
T Consensus 84 ~dliIn~tp~ 93 (177)
T d1nvta1 84 VDIIINATPI 93 (177)
T ss_dssp CCEEEECSCT
T ss_pred hhhhccCCcc
Confidence 8999999873
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.80 E-value=0.0006 Score=60.79 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=37.8
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.| .|.+|..+|..|++.|.+|++.+|+.++++...+.+
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~ 67 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 67 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHH
Confidence 5788888 499999999999999999999999999988766544
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.78 E-value=0.0027 Score=59.22 Aligned_cols=80 Identities=15% Similarity=0.292 Sum_probs=50.0
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
|++|| |+ +.+|.++|..|++.|++|++.|++++.+++..+.+.... ..+..+..+++++.+..+.+. +.+..
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~-~~~~~Dvt~~~~v~~~~~~~~-----~~~g~ 79 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAA-CAIALDVTDQASIDRCVAELL-----DRWGS 79 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTE-EEEECCTTCHHHHHHHHHHHH-----HHHSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCce-EEEEeeCCCHHHHHHHHHHHH-----HHhCC
Confidence 55555 55 889999999999999999999999998877554331100 001123333444443332221 23567
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|.+.
T Consensus 80 iDilVnnA 87 (256)
T d1k2wa_ 80 IDILVNNA 87 (256)
T ss_dssp CCEEEECC
T ss_pred ccEEEeec
Confidence 88888775
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.75 E-value=0.0029 Score=48.55 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=46.1
Q ss_pred eEEEEEcCccchH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGS-GIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~-~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||-|||.|-+|. ++|..|...|++|...|+++...-+ .+.+.|. .+....+.+.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----------~L~~~Gi-----------~i~~gh~~~~i~~ 60 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----------YLRKLGI-----------PIFVPHSADNWYD 60 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTC-----------CEESSCCTTSCCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----------HHHHCCC-----------eEEeeecccccCC
Confidence 5899999999987 7899999999999999998643222 1234442 1222334455788
Q ss_pred CCEEEEe
Q 008576 227 VDMVIEA 233 (561)
Q Consensus 227 aDlViea 233 (561)
+|+||.+
T Consensus 61 ~d~vV~S 67 (89)
T d1j6ua1 61 PDLVIKT 67 (89)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
Confidence 9999875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.75 E-value=0.0024 Score=51.48 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=53.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|.|||+|..|..-|..|++.|.+|++++.....-.. .+.+.+.++ .+.-.-+.+++.++
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~i~---------~~~~~~~~~dl~~~ 73 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGMLT---------LVEGPFDETLLDSC 73 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTSCE---------EEESSCCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCCce---------eeccCCCHHHhCCC
Confidence 69999999999999999999999999999876542111 112222211 11111123468899
Q ss_pred CEEEEeccCChhhHHHHHHHH
Q 008576 228 DMVIEAIIENVSLKQQIFADL 248 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l 248 (561)
++|+.|.. +..+...+++..
T Consensus 74 ~lv~~at~-d~~~n~~i~~~a 93 (113)
T d1pjqa1 74 WLAIAATD-DDTVNQRVSDAA 93 (113)
T ss_dssp SEEEECCS-CHHHHHHHHHHH
T ss_pred cEEeecCC-CHHHHHHHHHHH
Confidence 99998865 455555555543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.66 E-value=0.008 Score=51.83 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=36.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~ 67 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 67 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence 4899999999999999999999999999999999987654
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.65 E-value=0.00069 Score=62.56 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=32.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+.+||+|||+|.+|.+.|..|+++|++|+++|++.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34699999999999999999999999999999753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.64 E-value=0.018 Score=50.10 Aligned_cols=40 Identities=23% Similarity=0.091 Sum_probs=35.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~ 70 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 70 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence 489999999999999999888897 7999999999887654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.62 E-value=0.00084 Score=62.64 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=52.4
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH---HHHcCCCCHHHHHhhhccccccccccc
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS---RVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~---~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
|++|| |+ +.||.++|..|++.|++|++.|++++.+++..+.+.+.... .+..+..+++++.+..+.+. +.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~ 80 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK-----EK 80 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH-----HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHH-----HH
Confidence 45544 55 78999999999999999999999999888766554332210 11223334444444333221 33
Q ss_pred cCCCCEEEEec
Q 008576 224 FKDVDMVIEAI 234 (561)
Q Consensus 224 l~~aDlVieav 234 (561)
+...|++|.+.
T Consensus 81 ~g~iDiLVnnA 91 (251)
T d1vl8a_ 81 FGKLDTVVNAA 91 (251)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 56788888775
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=96.58 E-value=0.0027 Score=58.78 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=49.4
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHhhhccccccccccc
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQS--RVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~--~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+|++| |++.+|.++|..|++.|++|++.+ ++++.++...+.++..-.+ .+..+..+++++++..+.+. +.
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~ 76 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI-----DA 76 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH-----HH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH-----HH
Confidence 46666 558899999999999999999865 5677766655444321000 01223334444444333221 33
Q ss_pred cCCCCEEEEec
Q 008576 224 FKDVDMVIEAI 234 (561)
Q Consensus 224 l~~aDlVieav 234 (561)
....|++|.+.
T Consensus 77 ~g~iDiLVnnA 87 (244)
T d1edoa_ 77 WGTIDVVVNNA 87 (244)
T ss_dssp SSCCSEEEECC
T ss_pred cCCCCcccccc
Confidence 56788888876
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.0014 Score=57.87 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=36.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (561)
++|.|||+|.+|.+++..|...|. ++++++|+++.++++..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~ 60 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence 699999999999999999999987 79999999888776553
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.58 E-value=0.0027 Score=52.40 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=52.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|+|+ |.||..|+..+...|+++... |.+ +.+.+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~----------------------------------------~~~~~~ 40 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN----------------------------------------GVEELD 40 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT----------------------------------------EEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC----------------------------------------cHHHhc
Confidence 48999996 999999999999999987642 311 123467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 271 (561)
++|+||+-.. ++...+.++... ..+.-+++.|++++-+++.
T Consensus 41 ~~DVvIDFS~--p~~~~~~l~~~~---~~~~p~ViGTTG~~~~~~~ 81 (128)
T d1vm6a3 41 SPDVVIDFSS--PEALPKTVDLCK---KYRAGLVLGTTALKEEHLQ 81 (128)
T ss_dssp CCSEEEECSC--GGGHHHHHHHHH---HHTCEEEECCCSCCHHHHH
T ss_pred cCCEEEEecC--HHHHHHHHHHHH---hcCCCEEEEcCCCCHHHHH
Confidence 8999998764 334334444332 3345566777777755443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00079 Score=52.43 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+||+|+|+|..|.++|..|.+.|++|+++|.+..
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 5899999999999999999999999999997553
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.45 E-value=0.0017 Score=56.65 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=36.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.||.|||+|+.|..-+.....-|..|+++|++.+++++..
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~ 69 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE 69 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence 5999999999999999998999999999999998877644
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.44 E-value=0.0053 Score=53.87 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=48.8
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 224 (561)
.||+|||+|.||...+..+... +++|+ ++|+++++++...+ +.+ +. ......++++++
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~----------~~~-~~--------~~~~~~~~~~~ll 62 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANN-YP--------ESTKIHGSYESLL 62 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTT-CC--------TTCEEESSHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchh----------ccc-cc--------cceeecCcHHHhh
Confidence 3899999999999999888776 66766 77999987655321 111 10 112233455432
Q ss_pred --CCCCEEEEeccCChh
Q 008576 225 --KDVDMVIEAIIENVS 239 (561)
Q Consensus 225 --~~aDlVieav~e~~~ 239 (561)
.+.|+|+.|+|.+..
T Consensus 63 ~~~~iD~v~I~tp~~~h 79 (184)
T d1ydwa1 63 EDPEIDALYVPLPTSLH 79 (184)
T ss_dssp HCTTCCEEEECCCGGGH
T ss_pred hccccceeeecccchhh
Confidence 568999999986544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.44 E-value=0.00084 Score=63.10 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=37.1
Q ss_pred eEEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
.||+|| |++.+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l 49 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI 49 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 377777 5589999999999999999999999999988766554
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.43 E-value=0.0012 Score=61.73 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=50.4
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH----HHHcCCCCHHHHHhhhcccccccccc
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS----RVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~----~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
|++|| |+ +.||.++|..|++.|++|++.|++++.+++..+.+.+.... .+..+..+++++.+..+.+. +
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~-----~ 79 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT-----E 79 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH-----H
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH-----H
Confidence 55555 55 78999999999999999999999999988766544322100 01112233444433332221 2
Q ss_pred ccCCCCEEEEec
Q 008576 223 SFKDVDMVIEAI 234 (561)
Q Consensus 223 ~l~~aDlVieav 234 (561)
.+...|++|.+.
T Consensus 80 ~~G~iDiLVnnA 91 (258)
T d1iy8a_ 80 RFGRIDGFFNNA 91 (258)
T ss_dssp HHSCCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 356678888764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.0011 Score=61.43 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=35.2
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
|+++| |+ +.||.++|..|+++|.+|+++|++++.+++..+.+
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~ 51 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC 51 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 56655 66 67999999999999999999999999988765443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.38 E-value=0.0017 Score=62.03 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=45.1
Q ss_pred hHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 110 QKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 110 ~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
..|+..++..+.++-....-++. ..-+||+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~------------~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 5 AECFQENDYEEFLEIARNGLKAT------------SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp GGGGCCTTHHHHHHHHHHCSCCC------------SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred HhhcCCccHHHHHHHHhcCCCCC------------CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 56888888777766543322111 122599999999999999999999999999999764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0013 Score=62.91 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=35.7
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR 191 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~ 191 (561)
|++|| |+ +.+|.++|..|++.|++|++.|++.+.++...+.+.
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~ 57 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQ 57 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 55555 54 789999999999999999999999999887665543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=96.34 E-value=0.017 Score=53.59 Aligned_cols=43 Identities=23% Similarity=0.153 Sum_probs=36.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
|+|.|.|+ +.||.++|..|++.|++|++.+++++.++++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~ 50 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW 50 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45666665 88999999999999999999999999888765443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.26 E-value=0.0011 Score=62.65 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=35.6
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
|++|| |+ +.||.++|..|++.|++|++.|++++.+++..+.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l 49 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII 49 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 54 88999999999999999999999999988766554
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.23 E-value=0.0012 Score=61.33 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=33.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+.+||+|||+|.-|...|..|+++|++|+++|++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 457999999999999999999999999999998654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.21 E-value=0.0012 Score=60.92 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=45.6
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
|++|| |+ +.||.++|..|++.|++|++.|++.+..+... .+.....+++++++..+.+. +....
T Consensus 8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~---------~~~~Dv~~~~~v~~~~~~~~-----~~~g~ 73 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF---------GVEVDVTDSDAVDRAFTAVE-----EHQGP 73 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE---------EEECCTTCHHHHHHHHHHHH-----HHHSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCce---------EEEEecCCHHHHHHHHHHHH-----HhcCC
Confidence 45555 55 67999999999999999999999876544311 11223334444444333222 23456
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|.+.
T Consensus 74 iDiLVnnA 81 (237)
T d1uzma1 74 VEVLVSNA 81 (237)
T ss_dssp CSEEEEEC
T ss_pred ceEEEeee
Confidence 78888775
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.0012 Score=53.60 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=32.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i 57 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 57 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence 68999999999999999999999999999987753
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.12 E-value=0.0016 Score=61.39 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=35.4
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
|++|| |+ +.+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i 48 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI 48 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 44 78999999999999999999999999988766554
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0012 Score=61.59 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=33.0
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
|++|| |+ +.||.++|..|++.|++|++.|++++.+++..
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~ 47 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALE 47 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 55555 55 88999999999999999999999998877644
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0082 Score=50.90 Aligned_cols=38 Identities=8% Similarity=-0.057 Sum_probs=34.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.+|.|+|.|.+|..++..|...|++|+++|.+++....
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~ 41 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIK 41 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHH
Confidence 37999999999999999999999999999999876443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0011 Score=54.43 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=32.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
+|++|||+|.+|.-+|..|++.|.+|+++++++.-
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~ 58 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 58 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence 69999999999999999999999999999987643
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=96.07 E-value=0.0012 Score=62.22 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=49.7
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHH-HHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANL-QSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
|++|| | ++.+|.++|..|++.|++|++.|++++.+++..+.+...- ...+..+..+++++.+..+.+. +.+.
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~-----~~~g 81 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTI-----AKHG 81 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH-----HHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHH-----HHcC
Confidence 55555 5 4789999999999999999999999998887654432100 0001122333343433332221 2346
Q ss_pred CCCEEEEec
Q 008576 226 DVDMVIEAI 234 (561)
Q Consensus 226 ~aDlVieav 234 (561)
..|++|.+.
T Consensus 82 ~iD~lVnnA 90 (268)
T d2bgka1 82 KLDIMFGNV 90 (268)
T ss_dssp CCCEEEECC
T ss_pred Ccceecccc
Confidence 678888765
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.031 Score=48.63 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=44.6
Q ss_pred eEEEEEcCccchHH-HHHHHHhCC--CcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSG-IATALILSN--YPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~-iA~~la~~G--~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
.||+|||+|.||.. ....+.+.+ ++|+ ++|+++++++...+. .+.....+++++
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------------------~~~~~~~~~~~e 61 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYEE 61 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------------------ccccceeeeeec
Confidence 38999999999987 466676643 4554 889999876653211 111222345543
Q ss_pred -c--CCCCEEEEeccCCh
Q 008576 224 -F--KDVDMVIEAIIENV 238 (561)
Q Consensus 224 -l--~~aDlVieav~e~~ 238 (561)
+ .+.|+|+.|+|.+.
T Consensus 62 ll~~~~id~v~I~tp~~~ 79 (181)
T d1zh8a1 62 LLESGLVDAVDLTLPVEL 79 (181)
T ss_dssp HHHSSCCSEEEECCCGGG
T ss_pred cccccccceeeccccccc
Confidence 2 46899999988543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0018 Score=60.39 Aligned_cols=42 Identities=29% Similarity=0.279 Sum_probs=35.2
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
|++|| |+ +.+|.++|..|++.|++|++.|++.+.+++..+.+
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l 47 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL 47 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 55 78999999999999999999999999888766443
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=96.02 E-value=0.017 Score=52.26 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=46.6
Q ss_pred eEEEEEcCccchHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
-||+|||+|.||.. +...+... +++|+ ++|+++++++...+. .+ +.. ..+...+|+++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~----------~~-i~~-------~~~~~~~d~~el 95 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSNFDKI 95 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSSGGGG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh----------hc-ccc-------ccccccCchhhh
Confidence 38999999999975 55555554 66766 889999987653321 11 111 11222355544
Q ss_pred c--CCCCEEEEeccCCh
Q 008576 224 F--KDVDMVIEAIIENV 238 (561)
Q Consensus 224 l--~~aDlVieav~e~~ 238 (561)
+ .+.|+|++|+|...
T Consensus 96 l~~~~iD~V~I~tp~~~ 112 (221)
T d1h6da1 96 AKDPKIDAVYIILPNSL 112 (221)
T ss_dssp GGCTTCCEEEECSCGGG
T ss_pred cccccceeeeeccchhh
Confidence 3 46899999998554
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.01 E-value=0.0014 Score=61.09 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=34.7
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
|++|| | ++.||.++|..|++.|++|++.|++++.++...+.
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~ 49 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS 49 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 66666 4 58899999999999999999999999988765543
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0044 Score=52.35 Aligned_cols=96 Identities=13% Similarity=0.237 Sum_probs=55.5
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc--cccc
Q 008576 147 VKKVAILGG-GLMGSGIATALILS-NY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL--TGVL 219 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i--~~~~ 219 (561)
|+||+|||+ |..|.-+.+.|..+ .+ +++....+... +.... .....+ ....
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------------------g~~~~----~~~~~~~~~~~~ 58 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------------------QAAPS----FGGTTGTLQDAF 58 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------------------SBCCG----GGTCCCBCEETT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------------------ccccc----ccCCceeeeccc
Confidence 579999998 99999999876654 34 45555544321 11000 000111 1112
Q ss_pred cccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 220 DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 220 ~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
+.+.+.++|++|.|+|.+ +-+++..++.+ ...+++|++|+|..-+
T Consensus 59 ~~~~~~~~DivF~a~~~~--~s~~~~~~~~~-~g~~~~VID~Ss~fR~ 103 (146)
T d1t4ba1 59 DLEALKALDIIVTCQGGD--YTNEIYPKLRE-SGWQGYWIDAASSLRM 103 (146)
T ss_dssp CHHHHHTCSEEEECSCHH--HHHHHHHHHHH-TTCCCEEEECSSTTTT
T ss_pred chhhhhcCcEEEEecCch--HHHHhhHHHHh-cCCCeecccCCccccc
Confidence 234578999999999843 33444444433 2345678899886543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.00 E-value=0.0015 Score=53.23 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=31.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+||+|||+|.+|.-+|..|+..|.+|+++++.+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 6899999999999999999999999999998654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.034 Score=47.75 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=35.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|. +|+++|+++++++.++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~ 68 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 68 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence 489999999999999999999998 7999999999988654
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0051 Score=52.95 Aligned_cols=68 Identities=9% Similarity=-0.032 Sum_probs=44.6
Q ss_pred eEEEEEcCccchHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.||+|||+|.||.. ....+... +++| .++|++++..+...+. . + +...+++++
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~--------~--~-------------~~~~~~~~~l 58 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES--------W--R-------------IPYADSLSSL 58 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH--------H--T-------------CCBCSSHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhc--------c--c-------------ccccccchhh
Confidence 48999999999986 45556554 6665 4889998776553211 0 1 122334433
Q ss_pred cCCCCEEEEeccCCh
Q 008576 224 FKDVDMVIEAIIENV 238 (561)
Q Consensus 224 l~~aDlVieav~e~~ 238 (561)
+.+.|+|+.|+|.+.
T Consensus 59 ~~~~D~V~I~tp~~~ 73 (164)
T d1tlta1 59 AASCDAVFVHSSTAS 73 (164)
T ss_dssp HTTCSEEEECSCTTH
T ss_pred hhhcccccccccchh
Confidence 468999999998653
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.92 E-value=0.0022 Score=59.95 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=30.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
.|+|||+|.+|.++|..|+++|++|+++|+++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999864
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0015 Score=53.13 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=32.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
+||+|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~ 56 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP 56 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence 58999999999999999999999999999997643
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0025 Score=55.91 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=33.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
.-+||+|||+|..|..-|..|+++||+|+++|.++.
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 347999999999999999999999999999998763
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0019 Score=48.06 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=32.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
|++|+|||+|..|.-++....+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 58999999999999999999999999999997653
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.88 E-value=0.002 Score=56.05 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=43.8
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
.||+|||+|.||...+..+... +++++ ++|++++.... .......++ +..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~ 56 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA 56 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence 4899999999999999988775 56654 77887643111 012223333 346
Q ss_pred CCCCEEEEeccCCh
Q 008576 225 KDVDMVIEAIIENV 238 (561)
Q Consensus 225 ~~aDlVieav~e~~ 238 (561)
.++|+|++|+|...
T Consensus 57 ~~~D~Vvi~tp~~~ 70 (170)
T d1f06a1 57 DDVDVLFLCMGSAT 70 (170)
T ss_dssp TTCSEEEECSCTTT
T ss_pred cccceEEEeCCCcc
Confidence 78999999998654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=95.88 E-value=0.0037 Score=58.34 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=49.5
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHH---HHHcCCCCHHHHHhhhcccccccccc
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQS---RVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~---~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
|+++| |++.||.++|..|++.|++|++.+++ .+.+++..+.+...... .+..+..+++++++..+.+. +
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~ 79 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV-----R 79 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH-----H
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH-----H
Confidence 66666 45779999999999999999999997 55566555443322110 11123334444444333221 2
Q ss_pred ccCCCCEEEEec
Q 008576 223 SFKDVDMVIEAI 234 (561)
Q Consensus 223 ~l~~aDlVieav 234 (561)
.+...|++|.+.
T Consensus 80 ~~G~iDiLVnnA 91 (260)
T d1x1ta1 80 QMGRIDILVNNA 91 (260)
T ss_dssp HHSCCSEEEECC
T ss_pred HhCCCcEEEeec
Confidence 356678888775
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.86 E-value=0.0015 Score=60.91 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=32.8
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+.|.|+ +.||.++|..|++.|++|++.|++++.+++..
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~ 46 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATA 46 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4555565 78999999999999999999999998877644
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.84 E-value=0.0029 Score=55.79 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=31.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (561)
+||+|||+|..|...|..|++.|+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 699999999999999999999999 5999998764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.74 E-value=0.07 Score=50.00 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=36.0
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
|++|| |+|.+|.++|..|++.|++|++.|++.+.+++..+.+
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l 69 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI 69 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 66666 5699999999999999999999999999888766544
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.65 E-value=0.004 Score=50.94 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=32.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
.++|+|||+|.+|.-+|..|++.|++|+++++.+.-
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~ 65 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 65 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence 469999999999999999999999999999987643
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.64 E-value=0.0066 Score=51.89 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=54.7
Q ss_pred eEEEEEcCccchHHH-HHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSGI-ATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~i-A~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~ 223 (561)
.||+|||+|.+|..+ ...+... ..+++ +.+++.+...... ..+.+.-. ....+..+ +..+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~---------a~~~~i~~~~~~~d~l~-------~~~~ 68 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLAR---------AQRMGVTTTYAGVEGLI-------KLPE 68 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHH---------HHHTTCCEESSHHHHHH-------HSGG
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhh---------hhhcCCcccccceeeee-------eccc
Confidence 489999999999864 5555444 34554 5588765322110 11222110 00011110 0113
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
..+.|+|+.|+|......+... ...++.++++++|++.
T Consensus 69 ~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a 106 (157)
T d1nvmb1 69 FADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA 106 (157)
T ss_dssp GGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred ccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence 5679999999986555444332 2234778889999884
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.60 E-value=0.0041 Score=59.75 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
.+||+|||+|.-|.+.|..|+++|++|+++|.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4799999999999999999999999999999765
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.55 E-value=0.0025 Score=51.92 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=31.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
++|+|||+|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 6899999999999999999999999999998754
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.55 E-value=0.0031 Score=58.15 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.9
Q ss_pred eEEEEE-cC-ccchHHHHHHHHhCCCc-------EEEEeCCHHHHHHHHHH
Q 008576 148 KKVAIL-GG-GLMGSGIATALILSNYP-------VILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VI-G~-G~mG~~iA~~la~~G~~-------V~l~d~~~~~~~~~~~~ 189 (561)
|+|++| |+ +.+|.++|..|++.|++ |++++++++.+++..+.
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~ 51 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE 51 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH
Confidence 477766 55 77999999999999997 99999999988775543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.54 E-value=0.017 Score=51.26 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=35.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|+|-|.|.+|..+|..|.+.|.+|+++|.+.+.+..
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~ 65 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAH 65 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHH
Confidence 58999999999999999999999999999999987765
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.53 E-value=0.012 Score=56.46 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=49.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.++++|||+|.++...+..+... . .+|.+|++++++.+...+.+. ..+ + ....+..+++
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~-~-----------~~~~~~~~a~ 185 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRG-I-----------SASVQPAEEA 185 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTT-C-----------CEEECCHHHH
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcC-C-----------ccccchhhhh
Confidence 35899999999999998887653 3 389999999998776543221 111 0 0112233567
Q ss_pred CCCCEEEEeccCC
Q 008576 225 KDVDMVIEAIIEN 237 (561)
Q Consensus 225 ~~aDlVieav~e~ 237 (561)
.+||+||.|++..
T Consensus 186 ~~aDiV~taT~s~ 198 (320)
T d1omoa_ 186 SRCDVLVTTTPSR 198 (320)
T ss_dssp TSSSEEEECCCCS
T ss_pred ccccEEEEeccCc
Confidence 8899999888754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.51 E-value=0.021 Score=52.76 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=33.3
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
|++|| | ++.||.++|..|++.|++|++.|++++.+++..
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~ 47 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA 47 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 56666 5 478999999999999999999999998877644
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.51 E-value=0.0049 Score=50.26 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=33.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
++|+|||+|.+|.-+|..|++.|.+|+++++.+.-+
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l 66 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 66 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence 589999999999999999999999999999987654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.51 E-value=0.0012 Score=61.84 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=32.0
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHH
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i 190 (561)
|+++| |++.+|.++|..|++.|++|++. +++++.+++..+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~ 51 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL 51 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH
Confidence 56555 45789999999999999999985 56776666655443
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.003 Score=51.93 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=31.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+||+|||+|.+|.-+|..|+..|.+|+++++++.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 5899999999999999999999999999999754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.44 E-value=0.027 Score=51.60 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=33.1
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
|++|| |+ +.+|.++|..|++.|++|++.|++++.++...
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 47 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA 47 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 55555 55 78999999999999999999999998877644
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0028 Score=59.64 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=37.0
Q ss_pred eEEEEE--cCccchHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAIL--GGGLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VI--G~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|+|| |.+.+|.++|..|++. |..|++.+|++++++++.+.+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l 48 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL 48 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence 589998 6688999999999985 999999999999988766544
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.39 E-value=0.0047 Score=57.63 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=30.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
++|+|||+|.-|.+.|..|+++|++|++++.++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 479999999999999999999999999999764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.38 E-value=0.005 Score=57.56 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=31.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
|||+|||+|.-|..-|..|+++|++|+++|.++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999999999999999999999999999754
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.37 E-value=0.0059 Score=49.82 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=30.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
++++|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 58999999999999999999999999999876
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.35 E-value=0.0025 Score=51.57 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=32.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
+|++|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i 56 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI 56 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence 68999999999999999999999999999987643
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0065 Score=48.65 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=32.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
..||+|||+|.+|.-+|....+-|++|+++|.+++
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 46999999999999999999999999999998875
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.30 E-value=0.0054 Score=50.02 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
++|+|||+|.+|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 5899999999999999999999999999998764
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.24 E-value=0.0038 Score=58.74 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=31.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
+|+|||+|.-|..+|..|+++|++|+++|++++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 7999999999999999999999999999998643
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.21 E-value=0.0028 Score=51.94 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=32.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
++++|||+|.+|.-+|..|.+.|.+|+++.+++.-+
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l 61 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV 61 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 589999999999999999999999999999876543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.07 Score=49.41 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
+++.|.|+ +.||.++|..|++.|++|++.+|+++.+++..+
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 34555566 679999999999999999999999999887543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=95.19 E-value=0.0052 Score=57.36 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=31.6
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHH
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIG 188 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~ 188 (561)
|++|| |++.+|.++|..|++.|++|++.+++.+ .++...+
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~ 50 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE 50 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence 66666 4588999999999999999999999854 4554443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.15 E-value=0.0092 Score=55.86 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=30.8
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCC-HHHHHHHH
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVN-EKFLEAGI 187 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~ 187 (561)
|++|| | ++.+|.+||..|++.|++|++.+++ ++.++...
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~ 60 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVV 60 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHH
Confidence 56555 5 5899999999999999999999987 44454433
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.04 E-value=0.0072 Score=50.07 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=33.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
+||+|||+|.+|.-+|..|+..|++|+++++.+..+
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l 71 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL 71 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence 589999999999999999999999999999976544
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=95.02 E-value=0.0054 Score=56.75 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=46.5
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
|+++| | ++.||.++|..|++.|++|++.|++++..+.+. .+ -...+..+..+++++++..+.+. +.+..
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~-~~---~~~~~~~Dv~~~~~v~~~~~~~~-----~~~G~ 76 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE-AI---GGAFFQVDLEDERERVRFVEEAA-----YALGR 76 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHH-HH---TCEEEECCTTCHHHHHHHHHHHH-----HHHSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-Hc---CCeEEEEeCCCHHHHHHHHHHHH-----HhcCC
Confidence 45555 5 588999999999999999999999987644321 11 00112233334444443332221 23566
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|.+.
T Consensus 77 iDiLVnnA 84 (248)
T d2d1ya1 77 VDVLVNNA 84 (248)
T ss_dssp CCEEEECC
T ss_pred CCeEEEeC
Confidence 78888764
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=95.01 E-value=0.0071 Score=57.26 Aligned_cols=32 Identities=19% Similarity=0.594 Sum_probs=29.6
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
+|.|||+|.+|.++|..|++.|. +|+++|++.
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 79999999999999999999995 799999863
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.96 E-value=0.0082 Score=57.87 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=31.9
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCH
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSN--YPVILKEVNE 180 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~ 180 (561)
+.|+||+|||+|.-|...|..|++.| ++|++++++.
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 35899999999999999999998876 6999999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0087 Score=51.61 Aligned_cols=40 Identities=25% Similarity=0.125 Sum_probs=34.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|.+|++.|.++++.+.++
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~ 71 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK 71 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHh
Confidence 4899999999999998888889999999999998876543
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.89 E-value=0.0064 Score=49.32 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=32.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
++|+|||+|.+|.-+|..|+..|.+|+++++.+.-
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~ 57 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL 57 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence 69999999999999999999999999999987653
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.85 E-value=0.018 Score=50.10 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=27.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEE-EeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~~ 181 (561)
|-||+|.|.|.||..+++.+..+ .++|+. .|.++.
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~ 37 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPN 37 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCS
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence 46999999999999999999876 467654 466544
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.81 E-value=0.0035 Score=58.04 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=28.9
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
||+|| |+ +.||.++|..|++.|++|++.|++++.
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~ 41 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP 41 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence 56666 55 789999999999999999999998653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.74 E-value=0.084 Score=45.42 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=35.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|. +|++.|.++++++.++
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~ 69 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK 69 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence 379999999999999999888897 7999999999877654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.72 E-value=0.0023 Score=58.36 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=25.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEE
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILK 176 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~ 176 (561)
+||+|||+|.+|.+.|..|+++|++|+++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~ 29 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQP 29 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence 48999999999999999999999875443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.69 E-value=0.02 Score=53.05 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=35.3
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
|++|| |+ +.+|.++|..|++.|++|+++|++++.+++..+.+
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~ 52 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW 52 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 54 78999999999999999999999999988766544
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.01 Score=56.32 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=31.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
|..|+|||+|.-|.++|..|+++|++|+++|.+.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 5689999999999999999999999999999765
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.62 E-value=0.057 Score=49.20 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=32.4
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++.|.|+ +.+|.++|+.|++.|++|++.+++.+.+++..
T Consensus 7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (241)
T d2a4ka1 7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAV 46 (241)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4555566 67999999999999999999999998876533
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.013 Score=55.48 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=31.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
-.||+|||+|.-|.+-|..|+++|++|++++.+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3589999999999999999999999999998654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.55 E-value=0.011 Score=55.00 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=29.3
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
-|+|||+|..|.+.|..|+++|++|+++|..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3899999999999999999999999999975
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.52 E-value=0.011 Score=53.52 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=29.6
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
||+|||+|.-|.+.|..|+++|+ +|+++|.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 79999999999999999999996 799999764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.44 E-value=0.012 Score=51.13 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=35.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~ 70 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 70 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence 489999999999999999999998 6889999999877654
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.33 E-value=0.063 Score=44.19 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=48.4
Q ss_pred EEEEEcC-ccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 149 KVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
||+|+|+ |.||..++..+.+. ++++. .+|+.... .. -...
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~~------------------------------------~~~~ 43 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-SL------------------------------------LTDG 43 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-HH------------------------------------HHTT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-hh------------------------------------hccc
Confidence 7999995 99999999877654 66654 44532110 00 0124
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 271 (561)
++|+||+-.. ++...+.++. .+..+.-+++.|++++-.++.
T Consensus 44 ~~DvvIDFS~--p~~~~~~~~~---~~~~~~~~ViGTTG~~~~~~~ 84 (135)
T d1yl7a1 44 NTEVVIDFTH--PDVVMGNLEF---LIDNGIHAVVGTTGFTAERFQ 84 (135)
T ss_dssp TCSEEEECCC--TTTHHHHHHH---HHHTTCEEEECCCCCCHHHHH
T ss_pred cCCEEEEccc--HHHHHHHHHH---HHhcCCCEEEeccccchhHHH
Confidence 6899998764 3333333333 334456566677777755443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.014 Score=53.57 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=33.9
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
||+|| |++.+|.++|..|++.|++|++.|++++.++...+
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 67766 45889999999999999999999999988776543
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.31 E-value=0.007 Score=49.60 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=32.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
++++|||+|.+|.-+|..|.+.|.+|+++++.+.-
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i 61 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL 61 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence 58999999999999999999999999999987643
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.27 E-value=0.08 Score=43.78 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=59.9
Q ss_pred ceEEEEEcC----ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 147 VKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
.++|+|||+ +..|..+...|...||+|+.++...+.+. .+....+++
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~-----------------------------G~~~~~sl~ 69 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVL-----------------------------GRKCYPSVL 69 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET-----------------------------TEECBSSGG
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccC-----------------------------CCccccccc
Confidence 368999997 57899999999999999998886542211 123344555
Q ss_pred ccC-CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC
Q 008576 223 SFK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (561)
Q Consensus 223 ~l~-~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 266 (561)
++. ..|+|+.++| .+...++++++.+. ....++ .+.++..
T Consensus 70 dlp~~iD~v~i~vp--~~~~~~~~~e~~~~-g~k~v~-~~~G~~~ 110 (139)
T d2d59a1 70 DIPDKIEVVDLFVK--PKLTMEYVEQAIKK-GAKVVW-FQYNTYN 110 (139)
T ss_dssp GCSSCCSEEEECSC--HHHHHHHHHHHHHH-TCSEEE-ECTTCCC
T ss_pred ccCccceEEEEEeC--HHHHHHHHHHHHHh-CCCEEE-EeccccC
Confidence 554 6899999998 66777888887664 333443 3444443
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=0.015 Score=49.85 Aligned_cols=103 Identities=17% Similarity=0.049 Sum_probs=56.3
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-
Q 008576 147 VKKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (561)
..||+|+|+ |.||..++..+... +++++ .+|+.....-. ...+.+.. .....+..+.+++
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~~----~~~~~~~~~~~~~~ 67 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAG----AGKTGVTVQSSLDA 67 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSS----SSCCSCCEESCSTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhhc----cccCCceeeccHHH
Confidence 469999996 99999999988775 66654 45543321000 00000000 0001223344554
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHH
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l 270 (561)
.+..+|+||+-.. ++...+.+ +.....+.-+++.|+++.-.++
T Consensus 68 ~~~~~DViIDFs~--p~~~~~~~---~~a~~~~~~~ViGTTG~~~~~~ 110 (162)
T d1diha1 68 VKDDFDVFIDFTR--PEGTLNHL---AFCRQHGKGMVIGTTGFDEAGK 110 (162)
T ss_dssp TTTSCSEEEECSC--HHHHHHHH---HHHHHTTCEEEECCCCCCHHHH
T ss_pred HhcccceEEEecc--HHHHHHHH---HHHHhccceeEEecCCCcHHHH
Confidence 3678999998764 33333333 3333445666677777765544
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.22 E-value=0.0099 Score=55.05 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=30.6
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
|++.|.|++ .+|.++|..|++.|++|++.+++++..+.
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~ 49 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE 49 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 355666864 59999999999999999999999765444
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=94.18 E-value=0.066 Score=49.83 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=32.8
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
|+++| |+ +.||.++|..|++.|++|++.|++++.+++..
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~ 46 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELE 46 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45555 55 89999999999999999999999998876543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.16 E-value=0.053 Score=51.98 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=34.7
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
+-++|.|.|+ |.+|+.++..|+++|++|+...|+.+..+.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~ 50 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN 50 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHH
Confidence 3479999977 999999999999999999999999876544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.16 E-value=0.024 Score=49.11 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=35.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~ 69 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 69 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence 489999999999999999988886 7999999999987754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.13 E-value=0.033 Score=47.52 Aligned_cols=40 Identities=23% Similarity=0.143 Sum_probs=35.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|.+|++.|+++++++.++
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~ 68 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR 68 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence 4899999999999999988889999999999999887643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.96 E-value=0.071 Score=46.02 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=36.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
..|+|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak 71 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM 71 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH
Confidence 379999999999999999999995 7999999999988765
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.019 Score=51.50 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=30.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
-|+|||+|.-|...|..|+++|++|+++|.++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 38999999999999999999999999999875
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=93.88 E-value=0.045 Score=45.80 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=54.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILS-NY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+||+|||+ |..|.-+.+.|..+ .| ++....-+... |....- ......+....+.+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~------------------gk~~~~--~~~~~~~~~~~~~~ 60 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG------------------VPAPNF--GKDAGMLHDAFDIE 60 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS------------------SBCCCS--SSCCCBCEETTCHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc------------------cccccc--CCcceeeecccchh
Confidence 48999988 99999999877654 44 44444332210 111000 00000111112334
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
.+.++|+||.|+|.+ +-+++..++.+. ...++|++++|..-+
T Consensus 61 ~~~~~DvvF~alp~~--~s~~~~~~l~~~-g~~~~VIDlSsdfR~ 102 (147)
T d1mb4a1 61 SLKQLDAVITCQGGS--YTEKVYPALRQA-GWKGYWIDAASTLRM 102 (147)
T ss_dssp HHTTCSEEEECSCHH--HHHHHHHHHHHT-TCCSEEEESSSTTTT
T ss_pred hhccccEEEEecCch--HHHHHhHHHHHc-CCceEEEeCCccccc
Confidence 478999999999954 444555555432 334678888887554
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.87 E-value=0.046 Score=50.37 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=36.4
Q ss_pred eEEEEE-cC-ccchHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAIL-GG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VI-G~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i 190 (561)
.||+|| |+ +.+|.++|..|++ .|++|++.+|+++.+++..+.+
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l 53 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL 53 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence 488888 55 6899999999986 6999999999999988766554
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=93.73 E-value=0.045 Score=52.56 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=49.0
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|.++..-+..+.. .++ +|.+||+++++.++..+++. +... -.+....+. ++
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~-------~~~g----------~~v~~~~s~~ea 190 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK-------EYSG----------LTIRRASSVAEA 190 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT-------TCTT----------CEEEECSSHHHH
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh-------hccC----------CCceecCCHHHH
Confidence 4589999999999988876644 354 79999999998776543211 1100 023345555 45
Q ss_pred cCCCCEEEEecc
Q 008576 224 FKDVDMVIEAII 235 (561)
Q Consensus 224 l~~aDlVieav~ 235 (561)
+++||+|+.|++
T Consensus 191 v~~ADIi~t~Ta 202 (340)
T d1x7da_ 191 VKGVDIITTVTA 202 (340)
T ss_dssp HTTCSEEEECCC
T ss_pred HhcCCceeeccc
Confidence 889999998775
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.71 E-value=0.031 Score=47.22 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=30.4
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLE 184 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (561)
+|.|+ |+|.||..+|..|++.|++|+++++.+.-+.
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~ 78 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY 78 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 55555 9999999999999999999999998764433
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.63 E-value=0.021 Score=51.84 Aligned_cols=36 Identities=39% Similarity=0.514 Sum_probs=33.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+-+||+|||+|.-|...|..|++.|++|++++.+++
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 457999999999999999999999999999998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=0.022 Score=48.97 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=35.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~ 68 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM 68 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence 4899999999999988887778999999999999887654
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.57 E-value=0.11 Score=46.86 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=36.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|+|-|.|.+|..+|..|...|..|++.|.+...++...
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~ 79 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHH
Confidence 5899999999999999999999999999999998876543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.024 Score=51.96 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=32.5
Q ss_pred EEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 149 kV~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
|+++| |++.+|.+||+.|++.|++|++.|++++.+++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~ 45 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE 45 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 66666 55999999999999999999999999987765
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.49 E-value=0.34 Score=38.98 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=31.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
+.|.|+|.|.+|..++..| .|++|+++|.+++..+..
T Consensus 1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~ 37 (129)
T d2fy8a1 1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV 37 (129)
T ss_dssp CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH
T ss_pred CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH
Confidence 4689999999999999988 477899999999877653
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.48 E-value=0.048 Score=44.60 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=55.4
Q ss_pred eEEEEEcC----ccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILGG----GLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~----G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
++|+|||+ |.+|..+.+.|...| .+|+.++.+.+.+ ..+....+++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~ 59 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK 59 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence 68999997 888999999887766 5888887654322 1233445666
Q ss_pred ccC-CCCEEEEeccCChhhHHHHHHHHHhhcCCCcee
Q 008576 223 SFK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 223 ~l~-~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii 258 (561)
++. ..|+++.++| .+..-++++++.+.--+..++
T Consensus 60 dlp~~vDlvvi~vp--~~~~~~~~~~~~~~g~~~~vi 94 (129)
T d2csua1 60 DIPDEIDLAIIVVP--KRFVKDTLIQCGEKGVKGVVI 94 (129)
T ss_dssp SCSSCCSEEEECSC--HHHHHHHHHHHHHHTCCEEEE
T ss_pred hcCCCCceEEEecC--hHHhHHHHHHHHHcCCCEEEE
Confidence 664 5899999998 556667777766553344444
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.45 E-value=0.065 Score=42.88 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=52.3
Q ss_pred eEEEEEcC----ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++|+|||+ +..|..+...|.+.||+|+.++.+.+.+ ..+....++++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~ 52 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE 52 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence 68999996 6789999999999999988887653321 12333445555
Q ss_pred cC-CCCEEEEeccCChhhHHHHHHHHHhh
Q 008576 224 FK-DVDMVIEAIIENVSLKQQIFADLEKY 251 (561)
Q Consensus 224 l~-~aDlVieav~e~~~~k~~v~~~l~~~ 251 (561)
+. ..|+++.++| .+...+++++..+.
T Consensus 53 lp~~~D~vvi~vp--~~~~~~~l~~~~~~ 79 (116)
T d1y81a1 53 LPKDVDVIVFVVP--PKVGLQVAKEAVEA 79 (116)
T ss_dssp SCTTCCEEEECSC--HHHHHHHHHHHHHT
T ss_pred ccccceEEEEEeC--HHHHHHHHHHHHhc
Confidence 53 5699999998 55666777776553
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.036 Score=47.56 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=53.1
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||-+. .|.++|..|++.|..|++++.+...+. +.+++
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~ 82 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK 82 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence 5899999954 799999999999999999986443222 23568
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+|+||.|+...--++ ...+++++++++...
T Consensus 83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi 112 (170)
T d1a4ia1 83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGI 112 (170)
T ss_dssp CSEEEECCCCTTCBC-------GGGSCTTCEEEECCC
T ss_pred ccchhhccccccccc-------cccccCCCeEeccCc
Confidence 999999986432222 345788998876543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.37 E-value=0.028 Score=48.52 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=34.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.++..|. .|++.|+++++.+.+.
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~ 70 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 70 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence 479999999999999999998874 8999999999877644
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.35 E-value=0.14 Score=43.95 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=27.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEE-EEeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVI-LKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~-l~d~~~~ 181 (561)
|+||+|-|.|.+|..+.+.+...+ .+|+ +.|+++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~ 37 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD 37 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence 679999999999999999887775 5655 4566543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.30 E-value=0.022 Score=52.45 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=30.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (561)
.+|+|||+|.-|...|..|+++|+ +|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 389999999999999999999995 8999998764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.17 E-value=0.021 Score=51.53 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=30.1
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~ 181 (561)
.||+|||+|.-|.+-|..|+++ |++|+++|..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 3999999999999999999765 789999998764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=93.08 E-value=0.14 Score=46.98 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=31.4
Q ss_pred eEEEEEcC-cc--chHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008576 148 KKVAILGG-GL--MGSGIATALILSNYPVILKEVNEKFLE 184 (561)
Q Consensus 148 ~kV~VIG~-G~--mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (561)
|+|.|.|+ |. ||.+||+.|++.|++|++.+++.+.+.
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 56777785 54 999999999999999999999987653
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.93 E-value=0.019 Score=52.94 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=30.3
Q ss_pred EEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 151 AILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 151 ~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
.|-|+ +.+|.++|..|++.|++|++.|++.+.+++.
T Consensus 4 lVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~ 40 (252)
T d1zmta1 4 IVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL 40 (252)
T ss_dssp EESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 34455 6799999999999999999999998877654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.80 E-value=0.028 Score=47.91 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=50.3
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||-+. +|.+++..|.+.|..|++++.....+. +.+++
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~ 80 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN 80 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence 6899999865 899999999999999999985443221 12467
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
+|+||-|+.-.--++ .+.+++++++++.
T Consensus 81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDv 108 (166)
T d1b0aa1 81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDV 108 (166)
T ss_dssp CSEEEECSCCTTCBC-------TTTSCTTCEEEEC
T ss_pred hhHhhhhccCccccc-------ccccCCCcEEEec
Confidence 999999985222222 2356788877654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=92.79 E-value=0.15 Score=46.92 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=29.1
Q ss_pred eEEEEEcC-c--cchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGG-G--LMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~-G--~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
|++.|.|+ | .||.++|..|++.|++|++.+++++
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46667786 5 4999999999999999999999964
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.61 E-value=0.045 Score=45.92 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=29.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
++|.|||+|.+|..-+..|+++|.+|++++.
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 6999999999999999999999999999954
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.039 Score=52.38 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=29.2
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 150 VAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
|+|||+|.-|.+-|..|+++|++|+++|.+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 7999999999999999999999999999754
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.55 E-value=0.11 Score=48.39 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=25.1
Q ss_pred eEEEEE-c-CccchHHHHHHHHhCCCcEEEEe
Q 008576 148 KKVAIL-G-GGLMGSGIATALILSNYPVILKE 177 (561)
Q Consensus 148 ~kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d 177 (561)
+||+|| | ++.||.++|..|++.|.+|+.++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~ 33 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVY 33 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 689888 5 48899999999999998866554
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.53 E-value=0.46 Score=40.05 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=34.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+ |.+|...++.+...| .+|+++++++++++.++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~ 70 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK 70 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence 48999995 999999888888788 48999999998877654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=92.48 E-value=0.066 Score=48.51 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=32.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
|++.|.|+ +.||.++|..|++.|++|++.|++++.+++
T Consensus 5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 35566666 779999999999999999999999987654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.46 E-value=0.045 Score=50.67 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=32.4
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
-+||.|+|+ |.+|+.++..|.++|++|++++|+...
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 469999987 999999999999999999999997544
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.37 E-value=0.033 Score=47.52 Aligned_cols=33 Identities=36% Similarity=0.506 Sum_probs=29.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~ 180 (561)
+||.|||+|..|..+|..|.+.|. +|+++|+++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 599999999999999999999875 789999876
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=92.36 E-value=0.033 Score=51.09 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=28.6
Q ss_pred eEEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+||+|| |+ +.+|.++|..|++.|++|++.|++++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 356555 54 78999999999999999999999764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.28 E-value=0.37 Score=40.84 Aligned_cols=40 Identities=30% Similarity=0.264 Sum_probs=33.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|. .|++.|.++++++.++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~ 74 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE 74 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence 479999999999998888877675 7788999998877644
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.17 E-value=0.049 Score=49.39 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=30.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
-|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 489999999999999999999999999998753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.13 E-value=0.1 Score=44.15 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=35.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|.+|++.+.++++++.++
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k 68 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK 68 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence 4899999999999988888889999999999999877643
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.10 E-value=0.15 Score=43.65 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=27.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEE-EEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVI-LKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~-l~d~~~~~ 182 (561)
.||+|.|.|.||..+.+.+.... .+|+ +.|+++..
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~ 39 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF 39 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence 49999999999999999888764 5544 66766543
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.10 E-value=0.031 Score=44.85 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=29.2
Q ss_pred eEEEEEcCccchHHHHHHHH---hCCCcEEEEeCCHHHH
Q 008576 148 KKVAILGGGLMGSGIATALI---LSNYPVILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la---~~G~~V~l~d~~~~~~ 183 (561)
++|+|||+|.+|.-+|..|. .+|.+|+++++.+.-+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL 59 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL 59 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence 58999999999999996554 4567899999876544
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=91.84 E-value=0.092 Score=48.64 Aligned_cols=39 Identities=28% Similarity=0.287 Sum_probs=29.9
Q ss_pred EEEEE-c-CccchHHHHHHHHhCCCcEEEEeCC-HHHHHHHH
Q 008576 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVN-EKFLEAGI 187 (561)
Q Consensus 149 kV~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~ 187 (561)
-|+|| | ++.+|.++|..|++.|++|++.+++ ++.+++..
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence 37777 4 4789999999999999999987664 55454433
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=91.65 E-value=0.064 Score=49.95 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=31.3
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
-+||.|+|+ |.+|..++..|+++||+|++.+|+..
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 358999986 99999999999999999999998653
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.65 E-value=0.085 Score=43.89 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccccc-cccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTG-VLDY 221 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~-~~~~ 221 (561)
.||+|||+ |..|.-+.+.|.+++| ++....-+... |. +. .....+.. ..+.
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~------------------Gk~i~-----~~~~~~~~~~~~~ 59 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA------------------GQRMG-----FAESSLRVGDVDS 59 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT------------------TCEEE-----ETTEEEECEEGGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC------------------Cccee-----eccccchhccchh
Confidence 58999998 9999999999987665 56655433211 11 00 00011111 1122
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 266 (561)
+.+.++|+++.|+|.. .-.++..++ ...+++|++++|..-
T Consensus 60 ~~~~~~d~vf~a~p~~--~s~~~~~~~---~~~g~~VID~Ss~fR 99 (144)
T d2hjsa1 60 FDFSSVGLAFFAAAAE--VSRAHAERA---RAAGCSVIDLSGALE 99 (144)
T ss_dssp CCGGGCSEEEECSCHH--HHHHHHHHH---HHTTCEEEETTCTTT
T ss_pred hhhccceEEEecCCcc--hhhhhcccc---ccCCceEEeechhhc
Confidence 4578899999999843 333333333 456788888888654
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.051 Score=49.64 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.+|..|++.|. +++++|.|.
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 599999999999999999999998 799999653
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.58 E-value=0.05 Score=51.90 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=31.3
Q ss_pred cceEEEEEcCccchHHHHHHHH-----hCCCcEEEEeCCHH
Q 008576 146 RVKKVAILGGGLMGSGIATALI-----LSNYPVILKEVNEK 181 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la-----~~G~~V~l~d~~~~ 181 (561)
..--|+|||+|..|..+|..|+ ++|++|+++|+++.
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 3457999999999999999996 57999999998653
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=91.57 E-value=0.03 Score=44.84 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=29.3
Q ss_pred eEEEEEcCccchHHHHHHHHh---CCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALIL---SNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~~~ 182 (561)
++|+|||+|..|.-+|..|.. .|.+|+++++.+.-
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i 56 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence 589999999999999976554 48899999987643
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=91.49 E-value=0.062 Score=50.69 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=32.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
--.|+|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 45799999999999999999999999999998754
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.27 E-value=0.034 Score=49.99 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=30.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-------cEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-------PVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-------~V~l~d~~~~ 181 (561)
.||+|||+|.-|-+-|..|+++|| +|+++|.++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 499999999999999999999884 7999998763
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.11 E-value=0.072 Score=45.65 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=34.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.++..|. .|+..|+++++++.++
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~ 70 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 70 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence 479999999999999988888876 6999999999887654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.96 E-value=0.14 Score=45.28 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=31.6
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCCCcEEEE--eCCHHHHH
Q 008576 146 RVKKVAILGG-GLMGSGIATALILSNYPVILK--EVNEKFLE 184 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~--d~~~~~~~ 184 (561)
.|++|.|.|+ |.+|..++..|++.|++|.++ .|+++...
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~ 43 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE 43 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence 4789999985 999999999999999876554 56776543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.88 E-value=0.17 Score=46.16 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=28.8
Q ss_pred EEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 150 VAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 150 V~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
|+|| | ++.+|.++|..|+++|++|++.|++.+..
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5666 4 47799999999999999999999986654
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=90.84 E-value=0.23 Score=40.62 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=56.4
Q ss_pred eEEEEEcC----ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++|+|||+ +..|..+...|.+.|++++.+..++..- .........++.+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---------------------------~i~g~~~~~~l~~ 66 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---------------------------ELFGEEAVASLLD 66 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---------------------------EETTEECBSSGGG
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---------------------------eeeceecccchhh
Confidence 58999998 7899999999999999999998765310 0012233445555
Q ss_pred c-CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 224 l-~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+ ...|+|+.++| .+...+++++..+. ...+++.
T Consensus 67 i~~~iD~v~v~~p--~~~v~~~v~~~~~~-g~k~i~~ 100 (136)
T d1iuka_ 67 LKEPVDILDVFRP--PSALMDHLPEVLAL-RPGLVWL 100 (136)
T ss_dssp CCSCCSEEEECSC--HHHHTTTHHHHHHH-CCSCEEE
T ss_pred ccCCCceEEEecc--HHHHHHHHHHHHhh-CCCeEEE
Confidence 5 45799999998 55555667766554 3345543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.78 E-value=0.059 Score=49.59 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=30.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
|||.|.|+ |.+|+.++..|..+||+|+..|+++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 47999987 9999999999999999999999864
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.75 E-value=0.31 Score=45.68 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=28.1
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
|++|| |+ +.||.++|..|++.|++|++.|++.+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 67777 54 78999999999999999999988643
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.11 Score=47.38 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=30.0
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
|+|.|.|++ .+|.++|..|++.|++|++.+++++..+.
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~ 46 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR 46 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 456666764 47899999999999999999999664443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=90.39 E-value=0.089 Score=45.44 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=34.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
.||..||+|. | ..+..|++.|++|+.+|++++.++.+.++
T Consensus 22 ~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~ 61 (201)
T d1pjza_ 22 ARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTE 61 (201)
T ss_dssp CEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred CEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence 4999999998 3 47778999999999999999999887643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.29 E-value=0.11 Score=44.31 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=33.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|. .|+..|.++++++.++
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak 70 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 70 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence 479999999999888888888886 6788899988876644
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.23 E-value=0.08 Score=44.68 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=27.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
.||+|||+|..|..+|..|.+ +.+|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 489999999999999998864 78999998753
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=90.15 E-value=0.1 Score=47.52 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=31.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
..|.|||+|.-|...|..++++|++|+++|.++.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~ 38 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK 38 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4699999999999999999999999999998864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=90.09 E-value=0.081 Score=50.68 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=32.7
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
-++|.|+|+ |.+|+.++..|++.||+|++.-|+.+..
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 368999986 9999999999999999999999876543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.07 E-value=0.059 Score=46.26 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=33.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|.|+ |.+|....+.+...|.+|+..+.++++++.++
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~ 69 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL 69 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH
T ss_pred CEEEEEeccccchhhhhhhhccccccccccccccccccccc
Confidence 47999996 99999988888888999999999988776543
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.05 E-value=0.058 Score=48.70 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=29.1
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
|++|| |+ +.||.++|..|++.|++|++.|++++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 55555 54 899999999999999999999998764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.81 E-value=0.075 Score=45.54 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
++|+|||+|..|..+|..|.+.|.+|+++.+.++
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA 37 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence 5899999999999999999999999888766553
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.68 E-value=0.12 Score=49.75 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=30.1
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
-+||.|.|+ |.+|+.|+..|.++||+|+++|+..
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 357999976 9999999999999999999998653
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.40 E-value=0.087 Score=47.59 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=30.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
.||.|.|+ +.+|.++|..|+++|++|++.|++++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 58988876 89999999999999999999999864
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=89.38 E-value=0.12 Score=49.13 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=28.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
|||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 57999977 99999999999999999999986
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.29 E-value=0.13 Score=44.58 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=30.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
+-++|+|||+|.-|..-|..+++.|.+|+++|..
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence 3479999999999999999999999999999853
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=89.28 E-value=0.14 Score=44.34 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=30.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
-++|+|||+|..|..-|..+++.|.+|+++++.
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~ 37 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM 37 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence 468999999999999999999999999999864
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.25 E-value=0.1 Score=47.53 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=34.4
Q ss_pred cceEEEEEcC-ccchHHHHHHHH---hCCCcEEEEeCCHHHHHHH
Q 008576 146 RVKKVAILGG-GLMGSGIATALI---LSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la---~~G~~V~l~d~~~~~~~~~ 186 (561)
+|++|.|-|+ ..+|.++|..|+ +.|++|++.+|+++.++..
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~ 45 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL 45 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 4788988887 789999998886 5799999999999877653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=89.05 E-value=0.12 Score=44.98 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=28.8
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~ 180 (561)
+||+|||+|..|..+|..|.+. +.+|++++++.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 5899999999999999999876 45799998764
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=88.98 E-value=0.3 Score=43.98 Aligned_cols=71 Identities=24% Similarity=0.220 Sum_probs=43.1
Q ss_pred eEEEEEcCccchHHHHH----HHHh--CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 148 KKVAILGGGLMGSGIAT----ALIL--SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~----~la~--~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
.||+|||+|.+|+-++. .+.. .+++|+ ++|++++.++...++ .+ + ......++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~----------~~-~---------~~~~~~~~ 76 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQ-L---------KHATGFDS 76 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TT-C---------TTCEEESC
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHh----------cc-c---------ccceeecc
Confidence 59999999987654443 3433 356765 899999887654321 11 0 01112234
Q ss_pred ccc-c--CCCCEEEEeccCCh
Q 008576 221 YES-F--KDVDMVIEAIIENV 238 (561)
Q Consensus 221 ~~~-l--~~aDlVieav~e~~ 238 (561)
+++ + .+.|+|+.|+|...
T Consensus 77 ~~~l~~~~~iD~V~i~tp~~~ 97 (237)
T d2nvwa1 77 LESFAQYKDIDMIVVSVKVPE 97 (237)
T ss_dssp HHHHHHCTTCSEEEECSCHHH
T ss_pred hhhcccccccceeeccCCCcc
Confidence 443 2 56899999998543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=88.93 E-value=0.14 Score=48.76 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=32.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
+||.|.|+ |.+|+.++..|+++|++|+++|++...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT 44 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 79999985 999999999999999999999997654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.76 E-value=0.29 Score=42.66 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=33.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|. .|++.|.++++++.+.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~ 67 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 67 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence 489999999999887777766776 7999999999987654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.57 E-value=0.25 Score=42.15 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=33.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+|.+|...++.+...|.. |++.|.++++++.++
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~ 70 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 70 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence 4899999999999999988888875 567799998877654
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=88.53 E-value=0.55 Score=42.64 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=28.0
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE 184 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (561)
.|.|.|+ +.+|.++|..|++.|.+|++.+++.+..+
T Consensus 7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~ 43 (254)
T d1sbya1 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT 43 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH
Confidence 4455555 67999999999999999988877665443
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=88.40 E-value=0.41 Score=40.94 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=54.2
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cccccc
Q 008576 147 VKKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES 223 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 223 (561)
|.||+|||+ |..|.-+.+.|.++- +++...--+... .+ .+.. ... ........ ..+.+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a-G~---~i~~----~~p----------~~~~~~~~~~~~~~~ 62 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA-GK---KLEE----IFP----------STLENSILSEFDPEK 62 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT-TS---BHHH----HCG----------GGCCCCBCBCCCHHH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC-CC---cccc----cCc----------hhhccccccccCHhH
Confidence 579999998 999999999998863 355544322111 00 0000 000 01111111 112222
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
..++|+|+.|+|..... ++ .+. ..++.|+++++..-+.
T Consensus 63 ~~~~~dvvf~a~p~~~s~--~~----~~~-~~~~~VIDlSadfRl~ 101 (176)
T d1vkna1 63 VSKNCDVLFTALPAGASY--DL----VRE-LKGVKIIDLGADFRFD 101 (176)
T ss_dssp HHHHCSEEEECCSTTHHH--HH----HTT-CCSCEEEESSSTTTCS
T ss_pred hccccceEEEccccHHHH--HH----HHh-hccceEEecCcccccc
Confidence 35799999999976432 22 222 2577888988876654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=88.39 E-value=0.096 Score=50.08 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=28.8
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCC
Q 008576 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
+||||.|.|+ |.+|+.++..|.++|++|.++.++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d 35 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD 35 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence 4789999985 999999999999999986666543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=88.33 E-value=0.16 Score=47.45 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=29.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
-|.|||+|.-|.+.|..+++.|.+|++++..+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 59999999999999999999999999999754
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.31 E-value=0.17 Score=50.11 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=30.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 899999763
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.11 E-value=0.17 Score=47.54 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=28.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
+||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 68999977 99999999999999999999986
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=87.99 E-value=0.2 Score=44.12 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=29.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
-|+|||+|.-|...|..+++.|.+|++++.+
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 4899999999999999999999999999975
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.98 E-value=0.18 Score=47.95 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=28.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
+||.|.|+ |.+|+.|+..|++.|++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 58999976 99999999999999999999984
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.91 E-value=0.18 Score=45.17 Aligned_cols=39 Identities=13% Similarity=-0.095 Sum_probs=33.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
.||..+|+|. +..+..|++.|++|+.+|.+++.++.+.+
T Consensus 47 ~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 47 LRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp CEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 4899999998 46688899999999999999999887654
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=87.91 E-value=0.51 Score=45.34 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=27.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHh-CCCcEEEEeC
Q 008576 148 KKVAILGG-GLMGSGIATALIL-SNYPVILKEV 178 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~-~G~~V~l~d~ 178 (561)
+||.|.|+ |-+|+.++..|++ .|++|+++|.
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~ 35 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS 35 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence 38999976 9999999999875 7999999984
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.84 E-value=0.16 Score=46.89 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.4
Q ss_pred EEEEEcCccchHHHHHHHHh-CCCcEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALIL-SNYPVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~-~G~~V~l~d~~~ 180 (561)
-|+|||+|.-|...|..|++ .|++|+++|..+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence 59999999999999999987 599999999875
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=87.46 E-value=0.41 Score=41.02 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=25.1
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhC-CCcEEEE
Q 008576 147 VKKVAILGG-GLMGSGIATALILS-NYPVILK 176 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~-G~~V~l~ 176 (561)
|.||+|||+ |..|.-+.+.|..+ .+++.-.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence 679999997 99999999999987 5666543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=87.44 E-value=0.21 Score=41.81 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=53.2
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cccccc
Q 008576 149 KVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES 223 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 223 (561)
||+|||+ |..|.-+.+.|.++.++ +....-+ +. .|..- ......... ......
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s-----------------~G~~~----~~~~~~~~~~~~~~~~ 60 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RS-----------------AGKSL----KFKDQDITIEETTETA 60 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GG-----------------TTCEE----EETTEEEEEEECCTTT
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-cc-----------------ccccc----cccCCcccccccchhh
Confidence 8999999 99999999999988753 3333321 11 11100 000001111 111234
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
..++|+++.|.|.... .+... .....++.|++++|....
T Consensus 61 ~~~~d~~f~~~~~~~s--~~~~~---~~~~~~~~VIDlSsdfR~ 99 (154)
T d2gz1a1 61 FEGVDIALFSAGSSTS--AKYAP---YAVKAGVVVVDNTSYFRQ 99 (154)
T ss_dssp TTTCSEEEECSCHHHH--HHHHH---HHHHTTCEEEECSSTTTT
T ss_pred hhhhhhhhhccCccch--hhHHh---hhccccceehhcChhhhc
Confidence 6789999999984432 22222 234568889898887654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.43 E-value=0.2 Score=46.58 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=61.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc--
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-- 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-- 222 (561)
-++|.|||+|. ++++..+.+. ..+|+++|+|++.++.+++.+.... ...+..++ .+...+-.+
T Consensus 79 pk~vLiiGgG~--G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~-~~~~d~rv----------~i~~~Da~~~l 145 (285)
T d2o07a1 79 PRKVLIIGGGD--GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-IGYSSSKL----------TLHVGDGFEFM 145 (285)
T ss_dssp CCEEEEEECTT--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTE----------EEEESCHHHHH
T ss_pred cCeEEEeCCCc--hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc-cccCCCCc----------eEEEccHHHHH
Confidence 36999999996 3456666665 3589999999999887765332110 01111110 111111111
Q ss_pred --ccCCCCEEEEeccCChh-----hHHHHHHHHHhhcCCCceeeecCCC
Q 008576 223 --SFKDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 223 --~l~~aDlVieav~e~~~-----~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
.-+.-|+||.-.+++.. ..++.++.+...++++-+++.++.+
T Consensus 146 ~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 146 KQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp HTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 12346999976654222 3456788899999999988887654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.93 E-value=0.2 Score=48.52 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=28.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEe
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKE 177 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d 177 (561)
+||.|.|+ |.+|+.++..|++.||+|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 58999977 9999999999999999999998
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=86.91 E-value=0.41 Score=41.24 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=24.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhC-CCcEEEEe
Q 008576 148 KKVAILGG-GLMGSGIATALILS-NYPVILKE 177 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~-G~~V~l~d 177 (561)
-||+|||+ |..|.-+.+.|.++ .+++....
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 58999998 99999999999887 34665553
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=86.69 E-value=0.22 Score=47.65 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=28.3
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
-|.|||+|.-|+.+|..|+++|++|+++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 488999999999999999999999999986
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=0.26 Score=41.89 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=28.6
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
-|.|||+|..|..-|..+++.|.+|++++..
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 4899999999999999999999999999853
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.60 E-value=0.25 Score=46.24 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=30.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+||.|.|+ |.+|+.++..|+++||+|+.+|+..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 57889977 9999999999999999999999864
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=86.25 E-value=0.25 Score=46.45 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=30.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
.-|.|||+|.-|...|..++++|++|++++..+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 359999999999999999999999999999754
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=86.16 E-value=0.22 Score=47.43 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=28.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
-|.|||+|.-|..+|..|+++|++|++++.
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 489999999999999999999999999985
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=86.12 E-value=2 Score=36.03 Aligned_cols=40 Identities=8% Similarity=-0.060 Sum_probs=32.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+ |.+|....+.+...|.+|+..++++++.+.++
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~ 70 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL 70 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH
Confidence 48999966 55888888877778999999999999877643
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.11 E-value=0.35 Score=45.03 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=64.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc---c
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD---Y 221 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~ 221 (561)
.+||.|||+|.- +++..+++. +. +|+++|+|++.++.+++-.... ........+ .+...+. +
T Consensus 81 pk~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~-~~~~~~~r~----------~i~~~Da~~~l 147 (290)
T d1xj5a_ 81 PKKVLVIGGGDG--GVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV-AIGYEDPRV----------NLVIGDGVAFL 147 (290)
T ss_dssp CCEEEEETCSSS--HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH-HGGGGSTTE----------EEEESCHHHHH
T ss_pred CcceEEecCCch--HHHHHHHhcccceeeEEecCCHHHHHHHHHhchhh-hccccCCCc----------EEEEccHHHHH
Confidence 469999999964 455566665 43 7999999999988766433211 001111110 1111111 1
Q ss_pred ccc--CCCCEEEEeccCC-----hhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 222 ESF--KDVDMVIEAIIEN-----VSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 222 ~~l--~~aDlVieav~e~-----~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
... +.-|+||.-+++. .-..++.++.+.+.++++-+++.|+.+.
T Consensus 148 ~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 148 KNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp HTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred hhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 111 2479888665432 1245678899999999999998887653
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.97 E-value=0.3 Score=43.89 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=30.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
|+|.|.|+ |.+|.++|..|++.|++|.++|+++.
T Consensus 3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 57888877 78999999999999999999998653
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.83 E-value=0.21 Score=40.85 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHh----CCCcEEEEeCCHHHH
Q 008576 148 KKVAILGGGLMGSGIATALIL----SNYPVILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~----~G~~V~l~d~~~~~~ 183 (561)
++|+|||+|..|.-+|..|++ .|.+|+++++++.-+
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l 77 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM 77 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence 589999999999999988863 589999999876543
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=85.63 E-value=0.26 Score=43.81 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=29.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
-|+|||+|.-|.+-|..+++.|++|+++|.++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999764
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=85.62 E-value=0.25 Score=43.45 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=29.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
-|.|||+|.-|...|..+++.|.+|+++|.++
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 48999999999999999999999999999753
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.57 E-value=0.31 Score=43.03 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=29.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
-|+|||+|.-|..-|..+++.|.+|+++|..+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 48999999999999999999999999999754
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=85.45 E-value=0.25 Score=46.56 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=61.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-ccc-c
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY-E 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 222 (561)
.++|.|||+|.- +++..+++. ..+|+++|++++.++.+.+.+... ..+.... .+++.. .|. +
T Consensus 78 pk~VLiiG~G~G--~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~-----~~~~~~d-------~rv~i~~~Da~~ 143 (312)
T d1uira_ 78 PKRVLIVGGGEG--ATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW-----HQGAFDD-------PRAVLVIDDARA 143 (312)
T ss_dssp CCEEEEEECTTS--HHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHH-----HTTGGGC-------TTEEEEESCHHH
T ss_pred cceEEEeCCCch--HHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccc-----ccCccCC-------CceEEEEchHHH
Confidence 369999999963 444555554 348999999999988766432111 1111000 111111 111 1
Q ss_pred ---c-cCCCCEEEEeccCC-----h---hhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 223 ---S-FKDVDMVIEAIIEN-----V---SLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 223 ---~-l~~aDlVieav~e~-----~---~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
. -+.-|+||.-.++. + -.-+++++.+.+.++++-|++.++++
T Consensus 144 ~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 144 YLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp HHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred HhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 1 13579998765421 1 12467889999999998888876543
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=85.24 E-value=0.28 Score=47.02 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=28.3
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
-|.|||+|.-|..+|..|+++|++|+++++
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa 38 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM 38 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 589999999999999999999999999985
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.18 E-value=0.28 Score=46.38 Aligned_cols=33 Identities=33% Similarity=0.272 Sum_probs=29.0
Q ss_pred eEEE-EEcC-ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVA-ILGG-GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~-VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+||+ |.|+ |.+|+.++..|.++||+|+.+|+..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5894 6666 9999999999999999999999864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.79 E-value=0.48 Score=44.40 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=59.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~~~ 222 (561)
.+||.|||+|. ++++..+++. . -+|+++|+|++.++.+.+-+. ..... .+. .+++. .+-.+
T Consensus 107 pk~VLIiGgG~--G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~----------~~~~~-~~d--prv~i~i~Da~~ 171 (312)
T d2b2ca1 107 PKRVLIIGGGD--GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLP----------GMSCG-FSH--PKLDLFCGDGFE 171 (312)
T ss_dssp CCEEEEESCTT--SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCT----------TTSGG-GGC--TTEEEECSCHHH
T ss_pred CCeEEEeCCCc--hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhch----------hhccc-cCC--CCeEEEEchHHH
Confidence 36899999996 3455666665 3 479999999999887653210 00000 000 11111 11111
Q ss_pred ----ccCCCCEEEEeccCCh-----hhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 223 ----SFKDVDMVIEAIIENV-----SLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 223 ----~l~~aDlVieav~e~~-----~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
.-+.-|+||.-+++.. -..+++++.+...++++-|+++++.+.
T Consensus 172 ~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 172 FLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp HHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred HHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 1234799997654322 245677888999999999998887553
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=84.70 E-value=0.11 Score=44.76 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
+|+|||+|..|..+|..|.+.|++|.+..++
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~ 35 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAGYQGLITVVG 35 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence 6999999999999999999999877666543
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.67 E-value=0.32 Score=47.15 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=29.9
Q ss_pred EEEEEcCccchHHHHHHHHh------CCCcEEEEeCCHH
Q 008576 149 KVAILGGGLMGSGIATALIL------SNYPVILKEVNEK 181 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~------~G~~V~l~d~~~~ 181 (561)
-|+|||+|.-|.+.|..|++ +|++|+++|+..+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 49999999999999999997 8999999998653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.62 E-value=0.67 Score=39.13 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|+|+ |.+|....+.+...|.+|++.+.++++.+.++
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~ 70 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL 70 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEEeccccccccccccccccCccccccccccccccccc
Confidence 48999996 99999998888888999999999988766543
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.41 E-value=0.38 Score=42.15 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=28.5
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 150 VAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
|.|||+|..|...|..+++.|.+|+++|.+
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999999999865
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=84.36 E-value=0.89 Score=40.89 Aligned_cols=30 Identities=37% Similarity=0.209 Sum_probs=27.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEe
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKE 177 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d 177 (561)
++|+|-|.|.+|...|+.|.+.|.+|+.++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs 61 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence 589999999999999999999999987654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.30 E-value=0.31 Score=46.07 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=28.8
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeC
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
.++|.|.|+ |.+|+.++..|.+.|++|+++|+
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 467888876 99999999999999999999986
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=84.24 E-value=1.5 Score=35.77 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=47.5
Q ss_pred eEEEEE-cC--c---cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAIL-GG--G---LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VI-G~--G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+||.|| +. | .|...|+..+...|++|.++|.+....+.. .
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~----------------------------------~ 48 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQI----------------------------------M 48 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHH----------------------------------H
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhh----------------------------------c
Confidence 578877 22 3 466778888888999999999765332210 1
Q ss_pred cccCCCCEEEEeccCC----hhhHHHHHHHHHhhcCCCce
Q 008576 222 ESFKDVDMVIEAIIEN----VSLKQQIFADLEKYCPPHCI 257 (561)
Q Consensus 222 ~~l~~aDlVieav~e~----~~~k~~v~~~l~~~~~~~~i 257 (561)
..+.++|+||...|.. +...+.++..+...-.++..
T Consensus 49 ~~l~~~d~vi~Gspt~~~~~~~~~~~~l~~~~~~~~~~k~ 88 (152)
T d1e5da1 49 SEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNKI 88 (152)
T ss_dssp HHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSCE
T ss_pred cchhhCCEEEEeccccCCccCchhHHHHHHhhccCCCCCE
Confidence 2356799999998752 22344566666544334443
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.20 E-value=0.3 Score=43.03 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=29.4
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
.|.|||+|..|...|..+++.|.+|+++|.+
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 6999999999999999999999999999975
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.92 E-value=0.47 Score=37.59 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=31.4
Q ss_pred cceEEEEEcCcc-----------chHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 146 RVKKVAILGGGL-----------MGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 146 ~~~kV~VIG~G~-----------mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
..+||.|||+|. .+...+..|.+.|+++++++-|++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT 50 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET 50 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 457999999984 5677788899999999999999864
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.91 E-value=0.41 Score=41.83 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=29.0
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
-|.|||+|..|...|..+++.|.+|++++..
T Consensus 5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~ 35 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG 35 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 4899999999999999999999999999875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=83.75 E-value=1.1 Score=40.46 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=58.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc---ccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY---ESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~l 224 (561)
++|.=+|+|. | .++..+++.|.+|+.+|++++.++.+++.++ .++. . .++. ..+. ..-
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~-------~n~~-~--------~~~~-~~d~~~~~~~ 182 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAK-------RNGV-R--------PRFL-EGSLEAALPF 182 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHH-------HTTC-C--------CEEE-ESCHHHHGGG
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHH-------HcCC-c--------eeEE-eccccccccc
Confidence 4788889997 4 3555677889999999999999988765432 1221 1 0111 1111 113
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
...|+|+-.+. .....+++.++...++|+..++
T Consensus 183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence 46898887664 4456677788888888766443
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.69 E-value=0.38 Score=45.16 Aligned_cols=32 Identities=28% Similarity=0.139 Sum_probs=27.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
+++.|.|+ |.+|+.++..|++.||+|+.+|+.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~ 34 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR 34 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence 35556666 999999999999999999999984
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.59 E-value=1.9 Score=38.12 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=58.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cccccc---
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES--- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 223 (561)
++|.=||+|. | .++..|++.|++|+++|.+++.++.+.+++.+ .+. ++.+ ..+.+.
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-------~~~-----------~i~~~~~d~~~l~~ 102 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKE-------RNL-----------KIEFLQGDVLEIAF 102 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC-----------CCEEEESCGGGCCC
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccc-------ccc-----------cchheehhhhhccc
Confidence 5899999997 4 45667889999999999999998877654211 110 1111 112221
Q ss_pred cCCCCEEEEec--c--CChhhHHHHHHHHHhhcCCCceee
Q 008576 224 FKDVDMVIEAI--I--ENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 224 l~~aDlVieav--~--e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
-...|+|+.+- . -+..-.+.+++++..+++|+-+++
T Consensus 103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li 142 (251)
T d1wzna1 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (251)
T ss_dssp CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence 13568877531 1 122334678899999998877554
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=83.43 E-value=0.4 Score=44.84 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=27.6
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeC
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
||.|.|+ |.+|+.++..|+++|++|+++|.
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 7888876 99999999999999999999984
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=83.01 E-value=0.29 Score=45.64 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=28.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
+||.|.|+ |.+|+.|+..|+++|+.|++.+..
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~ 35 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR 35 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence 58999977 999999999999999999888754
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=82.90 E-value=0.46 Score=43.77 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=62.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc--cccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT--GVLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~--~~~~~~ 222 (561)
.++|.|||+|. ++++..+++. + -+|+++|+|++.++.+.+..... .+.... .++. ..+-.+
T Consensus 76 p~~vLiiGgG~--G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~------~~~~~d-------~r~~i~~~D~~~ 140 (274)
T d1iy9a_ 76 PEHVLVVGGGD--GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI------AGKLDD-------PRVDVQVDDGFM 140 (274)
T ss_dssp CCEEEEESCTT--CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH------HTTTTS-------TTEEEEESCSHH
T ss_pred cceEEecCCCC--cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhh------cccccC-------CCeEEEechHHH
Confidence 36999999996 3455555554 4 48999999999988766432111 111110 1121 111111
Q ss_pred c----cCCCCEEEEeccCChh-----hHHHHHHHHHhhcCCCceeeecCCC
Q 008576 223 S----FKDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 223 ~----l~~aDlVieav~e~~~-----~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
- =+.-|+||.-.++... ..+++++.+.+.++++.+++.++.+
T Consensus 141 ~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 141 HIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp HHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred HHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 1 1347999866543221 3568889999999999999887654
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.64 E-value=0.43 Score=42.32 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=28.6
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
-|.|||+|.-|..-|..+++.|++|.++|..
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~ 35 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV 35 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3899999999999999999999999999953
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=82.29 E-value=1.8 Score=36.66 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=32.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
.+|.|.|+ |..|...++.....|.+|+..++++++.+.++
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~ 71 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK 71 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH
Confidence 47888888 66787777777778999999999998876543
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=82.22 E-value=0.6 Score=43.06 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=30.8
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLE 184 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (561)
|++.|.|++ .+|.+||..|++.|.+|++.++++....
T Consensus 9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~ 48 (297)
T d1d7oa_ 9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNI 48 (297)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhh
Confidence 456666875 5999999999999999999999876543
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=82.20 E-value=0.5 Score=44.51 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=30.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-cEEEEeCCHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-PVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-~V~l~d~~~~~ 182 (561)
+||.|.|+ |.+|+.++..|++.|+ +|+++|+....
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~ 37 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA 37 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc
Confidence 48999977 9999999999999995 89999986543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=82.13 E-value=0.63 Score=43.24 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=61.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc--
Q 008576 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-- 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-- 222 (561)
-++|.|||+|.- +++..+++. + .+|+++|+|++.++.+.+.+...- .......+ ++...+-.+
T Consensus 90 pk~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-~~~~d~rv----------~v~~~Da~~~l 156 (295)
T d1inla_ 90 PKKVLIIGGGDG--GTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPRA----------EIVIANGAEYV 156 (295)
T ss_dssp CCEEEEEECTTC--HHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTE----------EEEESCHHHHG
T ss_pred CceEEEecCCch--HHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-ccccCCCc----------EEEhhhHHHHH
Confidence 369999999863 456666665 3 479999999999887664322110 00111100 111111111
Q ss_pred -c-cCCCCEEEEeccCCh------hhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 223 -S-FKDVDMVIEAIIENV------SLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 223 -~-l~~aDlVieav~e~~------~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
. -+.-|+||.-.++.. -..+++++.+.+.++++-|++.++.+
T Consensus 157 ~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 157 RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp GGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred hcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 1 134799997654321 12568889999999999999887765
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=81.89 E-value=0.81 Score=42.43 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=25.5
Q ss_pred eEEEEEcCccchHHHHHHHHhC----CC-------cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILS----NY-------PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~----G~-------~V~l~d~~ 179 (561)
.||.|+|+|.-|.+||..++.. |. +++++|++
T Consensus 26 ~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~ 68 (308)
T d1o0sa1 26 EKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID 68 (308)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence 5899999999999999887654 43 48888853
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.87 E-value=1.1 Score=41.06 Aligned_cols=105 Identities=16% Similarity=0.290 Sum_probs=60.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHH---HHHHHHHHcCCCCHHHHHhhhcccccc-cc-c
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVR---ANLQSRVKKGKMTQEKFEKTISLLTGV-LD-Y 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~---~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~ 221 (561)
++|.|||+|.-+ ++..+++.+ -+|+++|+|++.++.+++... ..++.... . - -.+++.. .| .
T Consensus 74 ~~vLiiG~G~G~--~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~-~-~--------d~rv~i~~~Da~ 141 (276)
T d1mjfa_ 74 KRVLVIGGGDGG--TVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN-G-K--------HEKAKLTIGDGF 141 (276)
T ss_dssp CEEEEEECTTSH--HHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHT-T-C--------CSSEEEEESCHH
T ss_pred ceEEEecCCchH--HHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhc-c-C--------CCCceEEEChHH
Confidence 699999999743 344445554 379999999999887653210 00000000 0 0 0112111 11 0
Q ss_pred ---cccCCCCEEEEeccCChh-----hHHHHHHHHHhhcCCCceeeecCCC
Q 008576 222 ---ESFKDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 222 ---~~l~~aDlVieav~e~~~-----~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
..-+.-|+||.-+++... ..++.++.+.+.++++-++++|+.+
T Consensus 142 ~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 142 EFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp HHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 112567999876654322 2357889999999999988877644
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.42 E-value=0.66 Score=43.76 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=31.4
Q ss_pred eEEEEE-cCc---cchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAIL-GGG---LMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VI-G~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.||++| |+| .+|.+||..|++.|.+|++.+++......
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~ 43 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIF 43 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhh
Confidence 378877 765 69999999999999999999988765443
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.33 E-value=5.6 Score=32.81 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=44.2
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
.||++||-| ++..|++..+..-|.+|+++.. +++.++...+. .......+..+.+.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~d~ 66 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQN------------------AAESGGSFELLHDP 66 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHH------------------HHHHTCEEEEESCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHh------------------hhcccceEEEecCH
Confidence 489999985 4668888888888999999865 33333332210 01111344555665
Q ss_pred -cccCCCCEEEEec
Q 008576 222 -ESFKDVDMVIEAI 234 (561)
Q Consensus 222 -~~l~~aDlVieav 234 (561)
+++.++|+|+.-.
T Consensus 67 ~ea~~~adviy~~~ 80 (163)
T d1pvva2 67 VKAVKDADVIYTDV 80 (163)
T ss_dssp HHHTTTCSEEEECC
T ss_pred HHHhhhccEEeecc
Confidence 5689999998543
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=81.26 E-value=0.51 Score=45.17 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=28.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
-+.|||+|.-|+-+|..|+++|++|.++++-
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 3789999999999999999999999999864
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=81.07 E-value=0.44 Score=44.63 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
.-|.|||+|.-|.+-|..++++|.+|++++..+
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999653
|