Citrus Sinensis ID: 008620

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI
cccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccc
****************************PSIWGDHFFQYTCDS****D**VKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQ**GHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI
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MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
(-)-germacrene D synthase Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.probableQ6Q3H3
Sesquiterpene synthase Sesquiterpene synthase producing the monocyclic sesquiterpene alcohol germacrene D-4-ol and helminthogermacrene and minor amounts of bicyclic compounds such as alpha-bulnesene, gamma-muurolene, alpha- and beta-selinenes, when incubated with farnesyl diphosphate.probableB5A435
(+)-delta-cadinene synthase isozyme A Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.probableQ43714

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
4.-.-.-Lyases.probable
4.2.-.-Carbon-oxygen lyases.probable
4.2.3.-Acting on phosphates.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3G4D, chain A
Confidence level:very confident
Coverage over the Query: 25-559
View the alignment between query and template
View the model in PyMOL