Citrus Sinensis ID: 008620

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI
cccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccc
cccEEEccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccHHHHHHHHHHHHcccccc
mslevsasPAKVIQNagkdstrgsanfppsiwgdhffqytcdsqetddqNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHktyrdcdlcdnendELYYISLQFRLFRQngyrisadvfntfegsdgkfkaSLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLearhyipiyqgesshnEALLTFAKLDFNGLQKLHQKELGDISRWWKELdfahklpfVRDRIAEVYFWAvgvhfepqysFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKwyhqnyiptvDEYMTVALIssghpnlsaisfvgmgdivtKESFEWLFSNPRSIRASCAVGRLMNDMAshkfeqsrghvaSSVECYinqygateEEAYSEFRKQVSNAWKDIneeclrptvvpvPLLIRILNLTRAADVIYKykdgytdseELKDFIVSLLINPVPI
MSLEVSASPAKVIqnagkdstrgsANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAvnktshtleLIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVfntfegsdgkfKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYkdgytdseelKDFIVSLLINPVPI
MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI
****************************PSIWGDHFFQYTCDS*******VKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKF***RGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLIN****
****************************PSIWGDHFFQYTCDS****D****HLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLES************VKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQ**GHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI
**********************GSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHK********ASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI
********************TRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI
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MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query559 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.991 0.994 0.620 0.0
F6M8H7562 Probable sesquiterpene sy N/A no 0.962 0.957 0.578 0.0
F6M8H4559 Probable sesquiterpene sy N/A no 0.967 0.967 0.578 0.0
F6M8H5562 Probable sesquiterpene sy N/A no 0.962 0.957 0.576 0.0
B5A435559 Sesquiterpene synthase OS N/A no 0.992 0.992 0.556 0.0
E3W207559 Sesquiterpene synthase OS N/A no 0.994 0.994 0.548 0.0
E3W208562 Sesquiterpene synthase OS N/A no 0.958 0.953 0.565 0.0
Q6Q3H2556 Valencene synthase OS=Vit no no 0.985 0.991 0.565 0.0
F6M8H6562 Probable sesquiterpene sy N/A no 0.962 0.957 0.561 0.0
O23945556 (-)-alpha-pinene synthase N/A no 0.987 0.992 0.506 1e-168
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/562 (62%), Positives = 429/562 (76%), Gaps = 8/562 (1%)

Query: 1   MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKE 59
           MS++ S       +N   +  R  ANF PSIWGDHF  Y  +   TDD   +H++ LK+E
Sbjct: 1   MSVQSSGVLLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEE 60

Query: 60  IRRMLKAVNKTS-HTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELY 118
           +R+ML A +  S   L LIDAIQRLGV+YHFESEIDE+L  M     D  +   E D +Y
Sbjct: 61  VRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMF----DGSVVSAEED-VY 115

Query: 119 YISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILD 178
             SL+FRL RQ GY +S D+FN F+ ++G FK SL+ DVRGMLSLYEATH RVHGE+ILD
Sbjct: 116 TASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILD 175

Query: 179 EALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALL 238
           EALAFTT+HL+S  K   +PLAEQV HAL QPI KGL RLEARHY  +YQ + SHN+ALL
Sbjct: 176 EALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKALL 235

Query: 239 TFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFA 298
             AKLDFN LQKLHQKEL DIS WWK+LDFAHKLPF RDR+ E YFW +GV+FEPQ+ FA
Sbjct: 236 KLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFA 295

Query: 299 RKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVY 358
           R++ TKVI MTSIIDDIYDVYG +EEL+LFT A+ERWDI+AIDQLPEYM++CY+AL+ VY
Sbjct: 296 RRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVY 355

Query: 359 SEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPN 418
           SE+E+++A + + YRL+YAKEAMKNQV+ Y+ EAKW     IPT++EYM VAL++S +  
Sbjct: 356 SEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSM 415

Query: 419 LSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECY 478
           L+  SFVGMGD VTKESF+W+FS P+ +RAS  V RLM+DM  HKFEQ RGHVAS+VECY
Sbjct: 416 LATTSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECY 475

Query: 479 INQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDG 538
           + Q+GA+E+E  +EF + V  AWKDINEECL PT VP+P+L+R+LNL R  DVIYK +DG
Sbjct: 476 MKQHGASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDG 535

Query: 539 YTD-SEELKDFIVSLLINPVPI 559
           YT     LKDF+ S+LI+PVPI
Sbjct: 536 YTHFGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|O23945|PINS_FRAVE (-)-alpha-pinene synthase OS=Fragaria vesca PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query559
322424205541 germacrene D synthase [Citrus hystrix] 0.966 0.998 0.957 0.0
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.991 0.994 0.628 0.0
147828675557 hypothetical protein VITISV_013313 [Viti 0.991 0.994 0.628 0.0
147856860557 hypothetical protein VITISV_030783 [Viti 0.991 0.994 0.624 0.0
75223414557 RecName: Full=(-)-germacrene D synthase 0.991 0.994 0.620 0.0
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.991 0.994 0.612 0.0
347664489557 (E)-beta-caryophyllene synthase [Vitis v 0.991 0.994 0.615 0.0
41058926561 (-)-germacrene D synthase [Populus trich 0.991 0.987 0.593 0.0
336318889561 terpene synthase 1 [Populus trichocarpa] 0.991 0.987 0.586 0.0
224126255561 predicted protein [Populus trichocarpa] 0.991 0.987 0.586 0.0
>gi|322424205|gb|ADX01384.1| germacrene D synthase [Citrus hystrix] Back     alignment and taxonomy information
 Score = 1078 bits (2789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/540 (95%), Positives = 523/540 (96%)

Query: 20  STRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDA 79
           S  GSANF PSIWGDHF QYT D QET D++VKHLELKKEIRRMLKAVNKTSHTLELIDA
Sbjct: 2   SVEGSANFHPSIWGDHFLQYTRDFQETGDRSVKHLELKKEIRRMLKAVNKTSHTLELIDA 61

Query: 80  IQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVF 139
           IQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVF
Sbjct: 62  IQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVF 121

Query: 140 NTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPL 199
           NTF+GSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPL
Sbjct: 122 NTFKGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPL 181

Query: 200 AEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGDI 259
            EQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKL FNGLQKLHQKELGDI
Sbjct: 182 VEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLGFNGLQKLHQKELGDI 241

Query: 260 SRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVY 319
           SRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSF RKLFTKVIYMTSIIDDIYDVY
Sbjct: 242 SRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFTRKLFTKVIYMTSIIDDIYDVY 301

Query: 320 GKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKE 379
           GKIEELDLFTSAIERWDINAIDQLPEYMKLC RALINVYSEVEKDL SQ KLYRLHYAKE
Sbjct: 302 GKIEELDLFTSAIERWDINAIDQLPEYMKLCIRALINVYSEVEKDLVSQGKLYRLHYAKE 361

Query: 380 AMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWL 439
           AMKNQVKHYFFEAKW HQNY+PTVDEYMTVALISSGHPNLS ISFVG+GDIVTKESFEWL
Sbjct: 362 AMKNQVKHYFFEAKWCHQNYVPTVDEYMTVALISSGHPNLSTISFVGLGDIVTKESFEWL 421

Query: 440 FSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSN 499
           FSNPRSIRASCAVGRLMNDM SHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSN
Sbjct: 422 FSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSN 481

Query: 500 AWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVPI 559
           AWKDINEECLRPTVVPVPLL+RILNLTRAADVIYKYKDGYT SEELKDFIVSLLINPVPI
Sbjct: 482 AWKDINEECLRPTVVPVPLLMRILNLTRAADVIYKYKDGYTYSEELKDFIVSLLINPVPI 541

Source: Citrus hystrix

Species: Citrus hystrix

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|336318889|gb|AEI52901.1| terpene synthase 1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126255|ref|XP_002319795.1| predicted protein [Populus trichocarpa] gi|222858171|gb|EEE95718.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query559
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.989 0.989 0.558 1.5e-170
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.998 0.977 0.491 2.6e-141
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.971 0.987 0.477 2.1e-139
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.967 0.974 0.479 7.4e-137
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.973 0.962 0.460 7.4e-137
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.982 0.973 0.453 6.9e-134
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.966 0.974 0.446 2.5e-129
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.944 0.968 0.445 9.9e-126
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.973 0.980 0.425 3.4e-125
UNIPROTKB|Q8LSC3583 Q8LSC3 "Germacrene A synthase 0.980 0.939 0.413 2e-120
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1658 (588.7 bits), Expect = 1.5e-170, P = 1.5e-170
 Identities = 312/559 (55%), Positives = 413/559 (73%)

Query:     3 LEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIR 61
             +E    P   + N  K+ +R  ANFPPSIWGD F  Y C+ +    Q  + +E LK+++R
Sbjct:     1 MENQKVPISSVPNL-KELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVR 59

Query:    62 RMLKA-VNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMH-KTYRDCDLCDNENDELYY 119
             R L A V+K    L +IDA QRLG++YHFE+EI+E L  ++  TY + + C   + +LY 
Sbjct:    60 RELAATVDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVENN-CFQGSHDLYS 118

Query:   120 ISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDE 179
             ++L FRL RQ+GY++S DVF+ F   +  FK SL +D +G+L LYEATHL VHGE +LD+
Sbjct:   119 VALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDD 178

Query:   180 ALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLT 239
             AL F  + LES+   +  PLAEQV+HAL +P+ KGL RLEA ++  IY+   SHN+ALL 
Sbjct:   179 ALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLK 238

Query:   240 FAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFAR 299
              AKLDFN LQ LH+KEL D++RWWK LDFA K PF RDR+ E YFW +GV+FEPQYS AR
Sbjct:   239 LAKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLAR 298

Query:   300 KLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYS 359
             K+  KV  M S IDDIYD YG ++EL+LFT A++RWD+ ++DQLPEYMK CY+++++VY+
Sbjct:   299 KIIIKVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYN 358

Query:   360 EVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNL 419
             E+E+++ +Q  L+R+HYAKE MK  V+ Y  EAKW H+ Y+PT +EYM VAL++SG+  L
Sbjct:   359 EIEEEMDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFL 418

Query:   420 SAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYI 479
             + IS++GMG+I +KE+F+WLFS+P  I AS +V RLM+DM SHKFEQ RGHVAS +ECY+
Sbjct:   419 TTISYLGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYM 478

Query:   480 NQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGY 539
              QYG TEEEA+ EFRKQ+  AWKDINEECLRP  VP PLL+RILNLTR  DVIYK +DGY
Sbjct:   479 KQYGVTEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGY 538

Query:   540 TDSEE-LKDFIVSLLINPV 557
             T  ++ +KD I SLLI+P+
Sbjct:   539 THVKKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC3 Q8LSC3 "Germacrene A synthase long form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
J9R5V4TPS2_VALOF4, ., 2, ., 3, ., 1, 3, 90.50620.97490.9697N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.41390.97130.9926yesno
O23945PINS_FRAVE4, ., 2, ., 3, ., 1, 40.50620.98740.9928N/Ano
F6M8H5SAUST_SANAS4, ., 2, ., 3, ., -0.57640.96240.9572N/Ano
F6M8H4SAST_SANAL4, ., 2, ., 3, ., -0.57870.96770.9677N/Ano
F6M8H7SMST_SANMU4, ., 2, ., 3, ., -0.57820.96240.9572N/Ano
F6M8H6SPIST_SANSP4, ., 2, ., 3, ., -0.56160.96240.9572N/Ano
Q43714DCS3_GOSAR4, ., 2, ., 3, ., 1, 30.50800.97670.9837N/Ano
E3W207SAUSS_SANAS4, ., 2, ., 3, ., -0.54820.99460.9946N/Ano
E3W208SPISS_SANSP4, ., 2, ., 3, ., -0.56560.95880.9537N/Ano
B5A435STPS1_SANAL4, ., 2, ., 3, ., -0.55610.99280.9928N/Ano
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.62090.99100.9946yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.963
3rd Layer4.2.3.26LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query559
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-119
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-119
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 4e-75
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-48
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 5e-36
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-32
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 4e-21
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  741 bits (1915), Expect = 0.0
 Identities = 291/544 (53%), Positives = 376/544 (69%), Gaps = 11/544 (2%)

Query: 22  RGSANFPPSIWGDHFFQ-YTCDSQETDDQNVKHLELKKEIRRMLKA---VNKTSHTLELI 77
           R SANFPPS+WGD  F   + D  E D+   +  ELK+E+R+ML+           L LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 78  DAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISAD 137
           D +QRLG+SYHFE EI EIL  +++ +       NE+D LY  +L FRL RQ+GY +S+D
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYW-TERGESNEDD-LYTTALGFRLLRQHGYNVSSD 118

Query: 138 VFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVC- 196
           VF  F+  DGKFK SL +DV+GMLSLYEA+HL   GE+ILDEAL+FTT HLE   +    
Sbjct: 119 VFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWI 178

Query: 197 --SPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQK 254
               L+ ++++AL  P+H  L RLEAR YI  Y+ E  HNE LL  AKLDFN LQ LHQ+
Sbjct: 179 IDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE 238

Query: 255 ELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDD 314
           EL  +SRWWK+LD A KLPF RDR+ E YFWA G +FEPQYS AR    K I + ++IDD
Sbjct: 239 ELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDD 298

Query: 315 IYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRL 374
            YDVYG +EEL+LFT A+ERWDI+AIDQLPEYMK+ ++AL+N  +E+E++L  +   Y +
Sbjct: 299 TYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVV 358

Query: 375 HYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKE 434
            Y KEA K+ VK Y  EAKW H+ Y+PT +EYM  AL+S G   L   SF+GMGDI+T+E
Sbjct: 359 PYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEE 418

Query: 435 SFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFR 494
           +FEWL S P+ +RAS  +GRLMND+A+++ E  RG VASS+ECY+ +YG +EEEA  E +
Sbjct: 419 AFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIK 478

Query: 495 KQVSNAWKDINEECLRP-TVVPVPLLIRILNLTRAADVIYKYKDGYTDSE-ELKDFIVSL 552
           K + +AWK++NEE L+P + VP P+  R LNL R  DV YK  DG+T  E E+KD I SL
Sbjct: 479 KMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSL 538

Query: 553 LINP 556
           L  P
Sbjct: 539 LFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 559
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.84
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.8
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.73
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 90.97
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 89.46
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 88.06
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 85.86
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 84.7
PLN02890422 geranyl diphosphate synthase 80.13
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.4e-152  Score=1261.76  Aligned_cols=532  Identities=54%  Similarity=0.918  Sum_probs=506.3

Q ss_pred             CCCCCCCCCCCCc-CCccccCCCchhhHHHHHHHH-HHHHHHHHhhh---ccCcccchhHHHHHHHhCcccccHHHHHHH
Q 008620           22 RGSANFPPSIWGD-HFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKA---VNKTSHTLELIDAIQRLGVSYHFESEIDEI   96 (559)
Q Consensus        22 r~~~~~~ps~W~~-~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~~---~~~~~~~l~lID~lqrLGi~~hFe~EI~~~   96 (559)
                      ||+++||||+||| +|++++++... ...+.++++ ||++||+|+..   +.|++++|++||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            7899999999999 66665544322 226789999 99999999976   679999999999999999999999999999


Q ss_pred             HHHhHhcCCCCCCCCCCCCChhHHHHHHHHhhhcCccccccccccccccccccccccccChHHHHhHhhhcccCCCCccH
Q 008620           97 LGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENI  176 (559)
Q Consensus        97 L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~i  176 (559)
                      |++||++ ...... ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+|
T Consensus        80 L~~i~~~-~~~~~~-~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~i  157 (542)
T cd00684          80 LDYIYRY-WTERGE-SNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDI  157 (542)
T ss_pred             HHHHHHh-hccccc-ccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHH
Confidence            9999986 100000 02479999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh---cCCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCcCcHHHHHHHhhhhHHHhHhhH
Q 008620          177 LDEALAFTTSHLESVAKQ---VCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQ  253 (559)
Q Consensus       177 Ldea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq  253 (559)
                      ||||++||++||++.++.   ++++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||
T Consensus       158 LdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq  237 (542)
T cd00684         158 LDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ  237 (542)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHH
Confidence            999999999999999986   78899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHh
Q 008620          254 KELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIE  333 (559)
Q Consensus       254 ~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~  333 (559)
                      +||++++|||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||.+|++.||+||+
T Consensus       238 ~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~  317 (542)
T cd00684         238 EELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVE  317 (542)
T ss_pred             HHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHH
Confidence            99999999999999988889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhh
Q 008620          334 RWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALIS  413 (559)
Q Consensus       334 rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S  413 (559)
                      |||+++++.+|+|||+||.+|++++++++.++.+++++++++|++++|+++++||++||+|+++||+||++|||++|++|
T Consensus       318 rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S  397 (542)
T cd00684         318 RWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVS  397 (542)
T ss_pred             hccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHH
Confidence            99999999999999999999999999999998888888999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHHHH
Q 008620          414 SGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEF  493 (559)
Q Consensus       414 ~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~~i  493 (559)
                      +|++++++++++++|..+|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|++++
T Consensus       398 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i  477 (542)
T cd00684         398 IGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEI  477 (542)
T ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999999999997777999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHhhhhccccccCCCCCCChh-HHHHHHhhhccc
Q 008620          494 RKQVSNAWKDINEECLRP-TVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE-LKDFIVSLLINP  556 (559)
Q Consensus       494 ~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~p  556 (559)
                      +++|+++||++|++++++ +++|++|+++++|++|+++++|+++||||.|+. ||++|++||++|
T Consensus       478 ~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         478 KKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999999999999997 789999999999999999999999999999966 999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query559
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-161
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-146
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-146
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-145
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-145
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-145
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-144
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-144
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-144
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-144
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-98
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 4e-98
2j5c_A569 Rational Conversion Of Substrate And Product Specif 5e-90
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 4e-88
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-76
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 1e-71
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-67
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 4e-24
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  565 bits (1456), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/562 (50%), Positives = 379/562 (67%), Gaps = 11/562 (1%)
Query: 1   MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVK-HLELKKE 59
           M+ +VS  P+    ++ KD  R  A+F PSIWGD F    C  +  D +  K H +LK+E
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFL--NCPDKNIDAETEKRHQQLKEE 58
Query: 60  IRRMLKA-VNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELY 118
           +R+M+ A +  ++  L  ID++QRLGVSYHF  EI++ L  ++    D      END LY
Sbjct: 59  VRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-----END-LY 112
Query: 119 YISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILD 178
             S++FRL R++GY +S DVFN F+   G FK+S+  DVRG+L LY+A++LRVHGE+ILD
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172
Query: 179 EALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALL 238
           EA++FTT HL      +  PL+E+V HAL Q I +GL R+EARHY+ +YQ   SHN+ALL
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALL 232
Query: 239 TFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFA 298
            FAK+DFN LQ LH+KEL +I RWWK+LDF  KLP+ RDR+ E YFW  GV+FEPQYS  
Sbjct: 233 EFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLG 292
Query: 299 RKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVY 358
           RK+ TKVI M SI+DD YD Y   EEL  +T+AIERWDI  ID++PEYMK  Y+AL++VY
Sbjct: 293 RKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVY 352
Query: 359 SEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPN 418
            E+ + +A   + YR+ YAK AM    + Y  EAKW  QNY P+ +E+   AL + G+  
Sbjct: 353 EEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAM 412
Query: 419 LSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECY 478
           L+  SFVGMGDIVT E+F+W  S+P+ I+AS  + R M+D+A HKF+  R    S++ECY
Sbjct: 413 LAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECY 472
Query: 479 INQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDG 538
           + +YG T +EAY  F K V +AWKD+N+E L+PT +P  +L R LNL R  DV+Y+  DG
Sbjct: 473 MEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDG 532
Query: 539 YT-DSEELKDFIVSLLINPVPI 559
           YT   +  K  I SLLI P+ +
Sbjct: 533 YTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query559
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-170
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-170
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-169
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-113
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 8e-36
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 7e-34
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 5e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 2e-10
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 4e-07
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  597 bits (1540), Expect = 0.0
 Identities = 275/561 (49%), Positives = 376/561 (67%), Gaps = 9/561 (1%)

Query: 1   MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEI 60
           M+ +VS  P+    ++ KD  R  A+F PSIWGD F     D     +   +H +LK+E+
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCP-DKNIDAETEKRHQQLKEEV 59

Query: 61  RRM-LKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYY 119
           R+M +  +  ++  L  ID++QRLGVSYHF  EI++ L  ++    D +      ++LY 
Sbjct: 60  RKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE------NDLYT 113

Query: 120 ISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDE 179
            S++FRL R++GY +S DVFN F+   G FK+S+  DVRG+L LY+A++LRVHGE+ILDE
Sbjct: 114 TSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDE 173

Query: 180 ALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLT 239
           A++FTT HL      +  PL+E+V HAL Q I +GL R+EARHY+ +YQ   SHN+ALL 
Sbjct: 174 AISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLE 233

Query: 240 FAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFAR 299
           FAK+DFN LQ LH+KEL +I RWWK+LDF  KLP+ RDR+ E YFW  GV+FEPQYS  R
Sbjct: 234 FAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGR 293

Query: 300 KLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYS 359
           K+ TKVI M SI+DD YD Y   EEL  +T+AIERWDI  ID++PEYMK  Y+AL++VY 
Sbjct: 294 KMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYE 353

Query: 360 EVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNL 419
           E+ + +A   + YR+ YAK AM    + Y  EAKW  QNY P+ +E+   AL + G+  L
Sbjct: 354 EMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAML 413

Query: 420 SAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYI 479
           +  SFVGMGDIVT E+F+W  S+P+ I+AS  + R M+D+A HKF+  R    S++ECY+
Sbjct: 414 AITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYM 473

Query: 480 NQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGY 539
            +YG T +EAY  F K V +AWKD+N+E L+PT +P  +L R LNL R  DV+Y+  DGY
Sbjct: 474 EEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGY 533

Query: 540 TDS-EELKDFIVSLLINPVPI 559
           T   +  K  I SLLI P+ +
Sbjct: 534 TYVGKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query559
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.75
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.11
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 87.49
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 86.27
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 83.69
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 82.93
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-168  Score=1375.83  Aligned_cols=534  Identities=51%  Similarity=0.897  Sum_probs=497.2

Q ss_pred             CCccCCCCCCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhhh-ccCcccchhHHHHHHHhCcccccHHHHHH
Q 008620           18 KDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKA-VNKTSHTLELIDAIQRLGVSYHFESEIDE   95 (559)
Q Consensus        18 ~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~~-~~~~~~~l~lID~lqrLGi~~hFe~EI~~   95 (559)
                      .++.||+||||||+|||+||++ +. ++..+.+.+|++ ||++||+||.+ ..|++++|+|||+||||||+|||++||++
T Consensus        18 ~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~   95 (554)
T 3g4d_A           18 KDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIED   95 (554)
T ss_dssp             -------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred             CCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            4468999999999999999997 43 334677899999 99999999976 47899999999999999999999999999


Q ss_pred             HHHHhHhcCCCCCCCCCCCCChhHHHHHHHHhhhcCccccccccccccccccccccccccChHHHHhHhhhcccCCCCcc
Q 008620           96 ILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGEN  175 (559)
Q Consensus        96 ~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~  175 (559)
                      +|++||+. +    .. ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+
T Consensus        96 ~L~~i~~~-~----~~-~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~  169 (554)
T 3g4d_A           96 ELENIYHN-N----ND-AENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGED  169 (554)
T ss_dssp             HHHHHHHS-C----CC-TTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHhc-c----CC-CCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcH
Confidence            99999974 2    21 237999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCcCcHHHHHHHhhhhHHHhHhhHHH
Q 008620          176 ILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKE  255 (559)
Q Consensus       176 iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E  255 (559)
                      |||||++||++||++.+++++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+|
T Consensus       170 iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~E  249 (554)
T 3g4d_A          170 ILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKE  249 (554)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999988878888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhhh
Q 008620          256 LGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERW  335 (559)
Q Consensus       256 l~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~rW  335 (559)
                      |++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+||
T Consensus       250 l~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RW  329 (554)
T 3g4d_A          250 LSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERW  329 (554)
T ss_dssp             HHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhc
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcc
Q 008620          336 DINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSG  415 (559)
Q Consensus       336 d~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g  415 (559)
                      |++++++||+|||+||.+|+++++|++.++.++||.++++|++++|+++++||++||+|+++||+||+||||+||++|+|
T Consensus       330 D~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg  409 (554)
T 3g4d_A          330 DIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCG  409 (554)
T ss_dssp             CGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSC
T ss_pred             CccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeeh
Confidence            99999999999999999999999999998889998899999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHHHHHH
Q 008620          416 HPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRK  495 (559)
Q Consensus       416 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~  495 (559)
                      +++++++++++||+.+|+++++|++++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||++++++
T Consensus       410 ~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~  489 (554)
T 3g4d_A          410 YAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNK  489 (554)
T ss_dssp             HHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccCCCCCCChh-HHHHHHhhhccccCC
Q 008620          496 QVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE-LKDFIVSLLINPVPI  559 (559)
Q Consensus       496 ~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~~  559 (559)
                      +|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+. ||++|++||++|||+
T Consensus       490 ~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          490 HVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            9999999999999998899999999999999999999999999999965 999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 559
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-147
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-145
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 5e-72
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-71
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 7e-57
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-37
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  425 bits (1095), Expect = e-147
 Identities = 117/326 (35%), Positives = 185/326 (56%), Gaps = 2/326 (0%)

Query: 234 NEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEP 293
           N  +   AKL+FN +Q  HQ+EL D+SRWW  L F  KLPFVRDR+ E +FWAVG+    
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 294 QYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRA 353
           Q+ + RK+   +I + ++IDDIYDVYG ++EL+LFT   +RWD  +I +LP YM+LCY  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 354 LINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALIS 413
           + N  S+   D+  +   + L Y ++++ + V+ YF EAKWYH  Y P++DEY+ +A IS
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 414 SGHPNLSAISFVGMGDIVTKES-FEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVA 472
              P + + ++    +     +  + L+     +  +  + RL +D+ +  FE +RG V 
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 473 SSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVI 532
            +++CY+ +  A+EEEA    +  +  AWKD+N         P  ++    N+ R A  I
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFI 301

Query: 533 YKYKDGYTDSE-ELKDFIVSLLINPV 557
           Y + DG+     +  + I  LL  P 
Sbjct: 302 YLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query559
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.42
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.2e-98  Score=778.97  Aligned_cols=326  Identities=47%  Similarity=0.870  Sum_probs=310.8

Q ss_pred             CcHHHHHHHhhhhHHHhHhhHHHHHHHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhh
Q 008620          233 HNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSII  312 (559)
Q Consensus       233 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~ii  312 (559)
                      +|++||||||||||+||++||+||+.++|||+++|+.+++||||||++|||||++|++|||+||.+|+++||++++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hccccccCCHHHHHHHHHHHhhhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008620          313 DDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEA  392 (559)
Q Consensus       313 DD~yD~~gt~eEl~~ft~ai~rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA  392 (559)
                      ||+||.|||+||++.||+||+|||.++++.||+|||+||.++++++++++.++.++||.+++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA  160 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES  160 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             HHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCc
Q 008620          393 KWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVA  472 (559)
Q Consensus       393 kW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~  472 (559)
                      +|+++||+||+||||++|.+|+|++++++++++++|. ++++.++|++++|+|+++++.|+||+|||+|+++|+++|+++
T Consensus       161 ~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~~  239 (328)
T d5easa2         161 TWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA  239 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999997 578889999999999999999999999999999999999999


Q ss_pred             chhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccC-CCCCCChh-HHHHHH
Q 008620          473 SSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE-LKDFIV  550 (559)
Q Consensus       473 n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~-~k~~i~  550 (559)
                      |+|.|||+|+|+|+|||+++++++|+++||+||+++++++++|++|+++++|+||+++++|+++ ||||+|++ +|++|+
T Consensus       240 s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i~  319 (328)
T d5easa2         240 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHII  319 (328)
T ss_dssp             CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHHH
T ss_pred             eeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987 99999987 999999


Q ss_pred             hhhccccCC
Q 008620          551 SLLINPVPI  559 (559)
Q Consensus       551 ~ll~~pi~~  559 (559)
                      +||++|||+
T Consensus       320 ~ll~epi~~  328 (328)
T d5easa2         320 NLLVDSIKI  328 (328)
T ss_dssp             HHHTCCCCC
T ss_pred             HHhccCCcC
Confidence            999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure